genome.fa.s9619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009619.1 Hibiscus syriacus cultivar Beakdansim tig00117008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55102

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3076--3116	8	5.2	8	82	5	57	34	0	29	36	1.58
3184--3788	126	4.8	126	99	0	1192	22	26	19	31	1.98
4176--4275	33	3.0	34	83	2	139	39	3	4	54	1.35
4795--4888	21	4.5	21	92	5	129	20	26	35	18	1.95
4892--4939	21	2.3	21	85	0	60	22	12	39	25	1.89
6659--6745	33	2.7	30	80	8	93	58	2	0	39	1.11
6659--6736	33	2.4	32	83	10	97	60	1	0	38	1.05
6694--6766	33	2.2	34	83	9	89	64	5	0	30	1.16
16756--17104	85	4.2	84	82	5	358	24	20	22	32	1.97
16758--17063	169	1.8	170	84	3	429	24	19	22	33	1.97
17285--17539	112	2.3	112	82	3	316	24	16	25	33	1.96
17657--17765	43	2.5	44	83	4	141	22	15	32	30	1.95
17878--17961	43	2.0	43	90	0	132	20	15	32	32	1.94
18119--18258	64	2.2	64	88	2	201	32	10	20	37	1.87
18517--18605	32	2.8	32	82	0	97	31	23	12	32	1.92
24983--25016	17	2.1	17	88	5	52	26	17	0	55	1.42
25059--25117	29	2.0	29	90	6	93	38	33	13	13	1.84
31020--31368	85	4.2	84	82	5	349	24	19	22	33	1.97
31022--31327	169	1.8	170	84	3	420	24	19	22	33	1.97
31553--31806	112	2.3	112	83	3	314	24	16	25	33	1.96
31925--32033	43	2.5	44	83	4	141	22	15	32	30	1.95
32146--32229	43	2.0	43	87	0	123	21	15	30	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32387--32526	64	2.2	64	85	2	192	32	10	19	37	1.86
32784--32872	32	2.8	32	82	0	97	31	23	12	32	1.92
34088--34121	2	17.0	2	93	0	59	50	2	0	47	1.16
38587--38632	21	2.1	21	84	4	56	15	13	4	67	1.38
39256--39289	17	2.1	17	88	5	52	26	17	0	55	1.42
39332--39390	29	2.0	29	90	6	93	38	33	13	13	1.84
43881--43932	21	2.5	21	81	3	61	38	19	25	17	1.93
43921--44035	20	5.7	19	72	14	79	34	24	16	24	1.95
44203--44246	22	2.0	22	90	0	70	20	43	15	20	1.88
44510--44547	20	1.9	20	88	0	58	13	15	21	50	1.78
45867--45911	18	2.5	18	88	0	72	26	44	15	13	1.83
46342--46395	19	2.8	19	82	2	63	40	24	22	12	1.89
46381--46500	32	3.7	32	95	1	213	47	22	18	11	1.80
46381--46505	14	7.5	19	64	28	79	46	22	19	12	1.82
46517--46574	14	3.9	14	79	16	71	8	17	25	48	1.75
46512--46590	32	2.4	33	95	2	142	10	18	24	46	1.80
46531--46648	20	6.4	19	77	11	86	13	19	24	42	1.87
48497--48532	14	2.6	14	90	0	54	30	0	22	47	1.52
48649--48716	19	3.8	19	85	14	101	47	17	22	13	1.82
48735--48792	20	2.9	20	92	0	89	18	22	20	37	1.94
49849--49902	24	2.2	24	90	0	81	24	16	20	38	1.92
52379--52509	19	7.7	18	64	23	70	42	19	22	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52379--52505	33	3.8	33	85	4	184	42	19	22	14	1.88
52380--52512	66	2.0	66	94	0	230	41	19	22	16	1.90
52505--52546	19	2.2	19	91	0	66	16	19	23	40	1.91
52514--52580	19	3.8	19	75	18	81	11	22	20	44	1.84
52686--52722	14	2.6	14	91	0	65	45	24	0	29	1.53
54051--54117	21	3.2	21	68	4	55	19	20	35	23	1.95
54051--54173	42	2.9	41	80	7	113	22	17	36	22	1.95

Tables:   1

The End!