genome.fa.s962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000962.1 Hibiscus syriacus cultivar Beakdansim tig00001923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76412

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6161--6241	41	2.0	42	90	2	128	24	22	18	34	1.96
6161--6260	41	2.4	41	83	3	121	26	23	18	33	1.97
8460--8771	138	2.3	138	84	3	380	27	11	13	48	1.76
12922--12967	20	2.3	20	96	0	83	15	30	0	54	1.41
21060--21097	12	3.0	13	84	7	51	18	5	18	57	1.58
35132--35180	2	24.5	2	100	0	98	48	0	0	51	1.00
38361--38418	23	2.5	24	85	5	82	34	32	18	13	1.91
44363--44392	15	1.9	16	93	6	53	33	3	20	43	1.68
44381--44476	31	3.0	34	72	17	96	33	6	15	44	1.72
44566--44634	28	2.6	26	81	6	77	36	21	7	34	1.81
48671--49003	137	2.4	137	87	3	490	33	26	15	25	1.95
49121--49243	56	2.2	56	85	4	160	37	25	13	23	1.92
49512--49545	3	11.0	3	93	6	59	32	0	0	67	0.91
51268--51341	2	37.5	2	97	2	141	51	0	0	48	1.00
53017--53072	27	2.2	26	80	6	60	42	25	8	23	1.82
53608--53655	25	1.9	25	83	8	62	64	18	14	2	1.38
54668--54712	23	2.0	23	95	0	81	46	2	4	46	1.35
56622--56670	20	2.5	20	90	6	73	48	22	8	20	1.75
58237--58372	72	1.9	72	85	0	191	25	18	20	35	1.95
60047--60208	54	3.0	54	88	0	234	33	11	27	27	1.91
60994--61937	123	7.8	123	87	4	1224	39	16	18	25	1.91
60994--61937	245	3.9	246	86	4	1231	39	16	18	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60994--61937	368	2.6	363	85	5	1221	39	16	18	25	1.91
63814--63893	2	40.5	2	97	2	153	48	0	0	51	1.00

Tables:   1

The End!