Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009624.1 Hibiscus syriacus cultivar Beakdansim tig00117016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8249038
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 38
Found at i:4010314 original size:43 final size:44
Alignment explanation
Indices: 4010233--4010315 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 44
4010223 CCGTGCATCA
* * *
4010233 AACAAAACTTTTACATGTAGGGGATAACTTTCAGTCCTAATTTC
1 AACAAAACTTTTACATATAGAGGATAACTTTCACTCCTAATTTC
*
4010277 AACAAAAC-TTTACATATAGAGGATAACTTTCCCTCCTAA
1 AACAAAACTTTTACATATAGAGGATAACTTTCACTCCTAA
4010316 CTTCTCTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 27 0.77
44 8 0.23
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (44 bp):
AACAAAACTTTTACATATAGAGGATAACTTTCACTCCTAATTTC
Found at i:4010755 original size:36 final size:36
Alignment explanation
Indices: 4010695--4010766 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
4010685 TTTTACCGTA
* *
4010695 GAATGCTTTTGGTATCAATCTAACAGGATCTTTGTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
* *
4010731 GAATACTTTTGGTATTAATATAACATGATCTTTGTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
4010767 TGCATAGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (36 bp):
GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
Found at i:4011268 original size:17 final size:17
Alignment explanation
Indices: 4011246--4011280 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
4011236 TCTAGGTTTT
4011246 ATTATATACAGGATTTC
1 ATTATATACAGGATTTC
* *
4011263 ATTATATGCAGGGTTTC
1 ATTATATACAGGATTTC
4011280 A
1 A
4011281 ATTCTCACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (17 bp):
ATTATATACAGGATTTC
Found at i:4012339 original size:18 final size:18
Alignment explanation
Indices: 4012318--4012373 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
4012308 TATTAAAAAA
4012318 TAAATAAATAT-TATTATT
1 TAAATAAATATATA-TATT
*
4012336 TAAACAAATATATATATT
1 TAAATAAATATATATATT
* *
4012354 TATATAAA-ATA-ATAAT
1 TAAATAAATATATATATT
4012370 TAAA
1 TAAA
4012374 GTAATAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 7 0.22
17 3 0.09
18 20 0.62
19 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATAAATATATATATT
Found at i:4014946 original size:47 final size:48
Alignment explanation
Indices: 4014845--4014949 Score: 115
Period size: 47 Copynumber: 2.2 Consensus size: 48
4014835 TCGAGTATGT
* * ** *
4014845 TAAATAATTTTTAATTTAATTTTAAATATAATTTCATATATATAATCA
1 TAAATAATATTTAATTTAATTTAAAATATAAAATCATAAATATAATCA
* * *
4014893 TCAATAA-ATTTAATTTAATTTAAAATATTAAAATCTTAAAT-TAATTA
1 TAAATAATATTTAATTTAATTTAAAATA-TAAAATCATAAATATAATCA
4014940 TAAATAATAT
1 TAAATAATAT
4014950 ATTGGATTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
47 29 0.63
48 17 0.37
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.47
Consensus pattern (48 bp):
TAAATAATATTTAATTTAATTTAAAATATAAAATCATAAATATAATCA
Found at i:4015812 original size:16 final size:17
Alignment explanation
Indices: 4015764--4015814 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 17
4015754 AAAATGCTAA
4015764 AGTGTACCGATACACTCTG
1 AGTGTACCGATACA--CTG
4015783 CAGTGTATCC-ATACACTG
1 -AGTGTA-CCGATACACTG
4015801 -GTGTACCGATACAC
1 AGTGTACCGATACAC
4015815 CCTGCAATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.07
16 11 0.38
18 3 0.10
20 11 0.38
21 2 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (17 bp):
AGTGTACCGATACACTG
Found at i:4015812 original size:36 final size:36
Alignment explanation
Indices: 4015765--4015834 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
4015755 AAATGCTAAA
* *
4015765 GTGTACCGATACACTCTGCAGTGTATCCATACACTG
1 GTGTACCGATACACCCTGCAATGTATCCATACACTG
4015801 GTGTACCGATACACCCTGCAATGTATCCATACAC
1 GTGTACCGATACACCCTGCAATGTATCCATACAC
4015835 CCTATGGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (36 bp):
GTGTACCGATACACCCTGCAATGTATCCATACACTG
Found at i:4015836 original size:20 final size:20
Alignment explanation
Indices: 4015764--4015837 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
4015754 AAAATGCTAA
*
4015764 AGTGTA-CCGATACACTCTGC
1 AGTGTATCC-ATACACCCTGC
4015784 AGTGTATCCATACA--CTG-
1 AGTGTATCCATACACCCTGC
4015801 -GTGTA-CCGATACACCCTGC
1 AGTGTATCC-ATACACCCTGC
*
4015820 AATGTATCCATACACCCT
1 AGTGTATCCATACACCCT
4015838 ATGGCTACTC
Statistics
Matches: 46, Mismatches: 1, Indels: 14
0.75 0.02 0.23
Matches are distributed among these distances:
15 2 0.04
16 10 0.22
18 6 0.13
20 24 0.52
21 4 0.09
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (20 bp):
AGTGTATCCATACACCCTGC
Found at i:4016061 original size:20 final size:22
Alignment explanation
Indices: 4016023--4016062 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
4016013 TTTTTGTAGA
4016023 AAAATCATCCCCAAACGGCTCC
1 AAAATCATCCCCAAACGGCTCC
4016045 AAAA-CATCCCC-AACGGCT
1 AAAATCATCCCCAAACGGCT
4016063 AGATACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.38, C:0.40, G:0.10, T:0.12
Consensus pattern (22 bp):
AAAATCATCCCCAAACGGCTCC
Found at i:4018744 original size:45 final size:43
Alignment explanation
Indices: 4018688--4018806 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
4018678 GCTAAAGTTC
*
4018688 GCGGAGTTTGTTAACGAAAAACGCCGCAATAGGTGACGATATATA
1 GCGGCGTTTGTTAA--AAAAACGCCGCAATAGGTGACGATATATA
* ** *
4018733 GCGGCGTTTGTTGAAAAAACGCCGCAATAGGTGTTGATATTTA
1 GCGGCGTTTGTTAAAAAAACGCCGCAATAGGTGACGATATATA
*
4018776 GCGGCGTTTGTCT--TAAAACGCCGC-ATAGGTG
1 GCGGCGTTTGT-TAAAAAAACGCCGCAATAGGTG
4018807 TTCGTTTAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
41 7 0.10
42 10 0.15
43 37 0.55
44 1 0.01
45 12 0.18
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (43 bp):
GCGGCGTTTGTTAAAAAAACGCCGCAATAGGTGACGATATATA
Found at i:4018753 original size:43 final size:42
Alignment explanation
Indices: 4018704--4018806 Score: 138
Period size: 43 Copynumber: 2.5 Consensus size: 42
4018694 TTTGTTAACG
4018704 AAAAACGCCGCAATAGGTGACGATATATAGCGGCGTTTGT-T
1 AAAAACGCCGCAATAGGTGACGATATATAGCGGCGTTTGTCT
** *
4018745 GAAAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCT
1 --AAAAACGCCGCAATAGGTGACGATATATAGCGGCGTTTGTCT
*
4018789 TAAAACGCCGC-ATAGGTG
1 AAAAACGCCGCAATAGGTG
4018807 TTCGTTTAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
41 7 0.13
42 10 0.18
43 37 0.67
44 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (42 bp):
AAAAACGCCGCAATAGGTGACGATATATAGCGGCGTTTGTCT
Found at i:4018823 original size:39 final size:41
Alignment explanation
Indices: 4018704--4018823 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 41
4018694 TTTGTTAACG
*
4018704 AAAAACGCCGCAATAGGTG-ACGATATATAGCGGCGTTTGTTGA
1 AAAAACGCCGCAATAGGTGTTCGAT-T-TAGCGGCGTTTGTT-A
4018747 AAAAACGCCGCAATAGGTGTT-GATATTTAGCGGCGTTTGTCT-
1 AAAAACGCCGCAATAGGTGTTCG--ATTTAGCGGCGTTTGT-TA
*
4018789 TAAAACGCCGC-ATAGGTGTTCG-TTTAGCGGCGTTT
1 AAAAACGCCGCAATAGGTGTTCGATTTAGCGGCGTTT
4018824 TCCCCCCAAA
Statistics
Matches: 70, Mismatches: 2, Indels: 14
0.81 0.02 0.16
Matches are distributed among these distances:
39 13 0.19
41 9 0.13
42 11 0.16
43 33 0.47
44 2 0.03
45 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (41 bp):
AAAAACGCCGCAATAGGTGTTCGATTTAGCGGCGTTTGTTA
Found at i:4018867 original size:43 final size:40
Alignment explanation
Indices: 4018747--4018910 Score: 147
Period size: 43 Copynumber: 3.9 Consensus size: 40
4018737 CGTTTGTTGA
*
4018747 AAAAACGCCGCAATAGG-TGTTGATATTTAGCGGCGTTTGT--CT
1 AAAAACGCCGC-ATAGGTTGTTG---TTTAGCGGCGTTT-TCCCC
*
4018789 TAAAACGCCGCATAGG-TGTTCGTTTAGCGGCGTTTTCCCC
1 AAAAACGCCGCATAGGTTGTT-GTTTAGCGGCGTTTTCCCC
**
4018829 CCAAACGCCGCAGTAGGTATCGTTGTTTAGCGGCGTTTTCCCC
1 AAAAACGCCGCA-TAGGT-T-GTTGTTTAGCGGCGTTTTCCCC
*
4018872 AAAAACGCCGCAATAGGTGTTGTTGTTTAGCGGTGTTTT
1 AAAAACGCCGC-ATA-G-GTTGTTGTTTAGCGGCGTTTT
4018911 TCAAAAAAGC
Statistics
Matches: 105, Mismatches: 7, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 11 0.10
41 13 0.12
42 11 0.10
43 48 0.46
44 6 0.06
45 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (40 bp):
AAAAACGCCGCATAGGTTGTTGTTTAGCGGCGTTTTCCCC
Found at i:4020509 original size:22 final size:22
Alignment explanation
Indices: 4020481--4020527 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
4020471 GCTTTACAAA
4020481 AAGTAAACATTCAAGGATCAAG
1 AAGTAAACATTCAAGGATCAAG
4020503 AAGTAAACATTCAAGGATCAAG
1 AAGTAAACATTCAAGGATCAAG
4020525 AAG
1 AAG
4020528 CCAACAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.17
Consensus pattern (22 bp):
AAGTAAACATTCAAGGATCAAG
Found at i:4020533 original size:22 final size:22
Alignment explanation
Indices: 4020485--4020533 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
4020475 TACAAAAAGT
*
4020485 AAACATTCAAGGATCAAGAAGT
1 AAACATTCAAGGATCAAGAAGC
4020507 AAACATTCAAGGATCAAGAAGC
1 AAACATTCAAGGATCAAGAAGC
*
4020529 CAACA
1 AAACA
4020534 AGTATTCGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.16, T:0.14
Consensus pattern (22 bp):
AAACATTCAAGGATCAAGAAGC
Found at i:4022376 original size:42 final size:42
Alignment explanation
Indices: 4022324--4022609 Score: 345
Period size: 42 Copynumber: 6.9 Consensus size: 42
4022314 ACAATCAAAT
*
4022324 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
1 TACGTGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
* *
4022366 TACGTGTCTATAGCGGCGTTTGTGTA-AAAAACGCCACTAAAG
1 TACGTGTCTATAGCGGCGTTTG-GTATTAAAACGCCACAAAAG
** *
4022408 TACGAATCTATAGCGGCATTTGGTATTAAAACGCCACAAAAG
1 TACGTGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
* * *
4022450 TACGTGTCTATAGCGGCGTTTGTGTA--AAAATGTCACTAAAG
1 TACGTGTCTATAGCGGCGTTTG-GTATTAAAACGCCACAAAAG
*
4022491 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
1 TACGTGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
* *
4022533 TACATGTTTATAGCGGCGTTTGTGTA--AAAACGCCACTAAAA-
1 TACGTGTCTATAGCGGCGTTTG-GTATTAAAACGCCAC-AAAAG
* *
4022574 TAC-TAGTTTATAGCGGCGTTT-GTATAAAAACGCCAC
1 TACGT-GTCTATAGCGGCGTTTGGTATTAAAACGCCAC
4022610 TACATTACGA
Statistics
Matches: 213, Mismatches: 21, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
39 3 0.01
40 4 0.02
41 75 0.35
42 122 0.57
43 9 0.04
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (42 bp):
TACGTGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAG
Found at i:4022500 original size:41 final size:41
Alignment explanation
Indices: 4022324--4022688 Score: 373
Period size: 41 Copynumber: 8.8 Consensus size: 41
4022314 ACAATCAAAT
*
4022324 TACGAGTCTATAGCGGCGTTTG-GTATTAAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTTGTGTA--AAAACGCCACTAAAG
*
4022366 TACGTGTCTATAGCGGCGTTTGTGTAAAAAACGCCACTAAAG
1 TACGAGTCTATAGCGGCGTTTGTGT-AAAAACGCCACTAAAG
* * *
4022408 TACGAATCTATAGCGGCATTTG-GTATTAAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTTGTGTA--AAAACGCCACTAAAG
* * *
4022450 TACGTGTCTATAGCGGCGTTTGTGTAAAAATGTCACTAAAG
1 TACGAGTCTATAGCGGCGTTTGTGTAAAAACGCCACTAAAG
*
4022491 TACGAGTCTATAGCGGCGTTTG-GTATTAAAACGCCACAAAAG
1 TACGAGTCTATAGCGGCGTTTGTGTA--AAAACGCCACTAAAG
* *
4022533 TAC-ATGTTTATAGCGGCGTTTGTGTAAAAACGCCACTAAAA
1 TACGA-GTCTATAGCGGCGTTTGTGTAAAAACGCCACTAAAG
* * * * *
4022574 TACTAGTTTATAGCGGCGTTTGTATAAAAACGCCACTACAT
1 TACGAGTCTATAGCGGCGTTTGTGTAAAAACGCCACTAAAG
* * * * * *
4022615 TACGATTCTTTAGCGGCATTTTTATACAAACGCCACTAAAG
1 TACGAGTCTATAGCGGCGTTTGTGTAAAAACGCCACTAAAG
* * * *
4022656 TA-TAGTATTTTGCGGCGTTTGT-TCAAAAACGCC
1 TACGAGTCTATAGCGGCGTTTGTGT-AAAAACGCC
4022689 GCTATATATA
Statistics
Matches: 274, Mismatches: 38, Indels: 24
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.00
40 26 0.09
41 119 0.43
42 119 0.43
43 8 0.03
44 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (41 bp):
TACGAGTCTATAGCGGCGTTTGTGTAAAAACGCCACTAAAG
Found at i:4022531 original size:83 final size:83
Alignment explanation
Indices: 4022324--4022657 Score: 474
Period size: 83 Copynumber: 4.0 Consensus size: 83
4022314 ACAATCAAAT
4022324 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
1 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
4022389 GTAAAAAACGCCACTAAAG
66 GT-AAAAACGCCACTAAAG
* *
4022408 TACGAATCTATAGCGGCATTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
1 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
* *
4022473 GTAAAAATGTCACTAAAG
66 GTAAAAACGCCACTAAAG
* *
4022491 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACATGTTTATAGCGGCGTTTGT
1 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
*
4022556 GTAAAAACGCCACTAAAA
66 GTAAAAACGCCACTAAAG
* * * * * * * * *
4022574 TACTAGTTTATAGCGGCGTTT-GTATAAAAACGCCACTACATTACGAT-TCTTTAGCGGCATTTT
1 TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACG-TGTCTATAGCGGCGTTTG
* *
4022637 TATACAAACGCCACTAAAG
65 TGTAAAAACGCCACTAAAG
4022656 TA
1 TA
4022658 TAGTATTTTG
Statistics
Matches: 224, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
82 49 0.22
83 110 0.49
84 65 0.29
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (83 bp):
TACGAGTCTATAGCGGCGTTTGGTATTAAAACGCCACAAAAGTACGTGTCTATAGCGGCGTTTGT
GTAAAAACGCCACTAAAG
Found at i:4026325 original size:33 final size:33
Alignment explanation
Indices: 4026288--4026357 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
4026278 AATGGTTGTT
4026288 TCGTGTGAAGAAAAATTAAGATGGATCGGTAGC
1 TCGTGTGAAGAAAAATTAAGATGGATCGGTAGC
4026321 TCGTGTGAAGAAAAATTAAGATGGATCGGTAGC
1 TCGTGTGAAGAAAAATTAAGATGGATCGGTAGC
4026354 TCGT
1 TCGT
4026358 TATAAGGCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (33 bp):
TCGTGTGAAGAAAAATTAAGATGGATCGGTAGC
Found at i:4030794 original size:15 final size:15
Alignment explanation
Indices: 4030774--4030802 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
4030764 ACGACCACGA
4030774 GCTGAGCCGAGCCGT
1 GCTGAGCCGAGCCGT
4030789 GCTGAGCCGAGCCG
1 GCTGAGCCGAGCCG
4030803 AGACAAGACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.41, T:0.10
Consensus pattern (15 bp):
GCTGAGCCGAGCCGT
Found at i:4031175 original size:40 final size:40
Alignment explanation
Indices: 4031120--4031201 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
4031110 TAAGATGGGG
*
4031120 GTAAACTCATAACACACAACTAACCCCTTCATCCACCTGA
1 GTAAACTCATAACACACAACTAAACCCTTCATCCACCTGA
4031160 GTAAACTCATAACACACAACTAAACCCTTCATCCACCTGA
1 GTAAACTCATAACACACAACTAAACCCTTCATCCACCTGA
4031200 GT
1 GT
4031202 CCTCGATGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.38, C:0.35, G:0.06, T:0.21
Consensus pattern (40 bp):
GTAAACTCATAACACACAACTAAACCCTTCATCCACCTGA
Found at i:4037846 original size:21 final size:21
Alignment explanation
Indices: 4037820--4037910 Score: 62
Period size: 21 Copynumber: 4.4 Consensus size: 21
4037810 TATATATATA
4037820 TATATATATTTAAAAAACATT
1 TATATATATTTAAAAAACATT
* ** *
4037841 TATATATTTTTTTAAAATATAT
1 TATATATATTTAAAAAACAT-T
**
4037863 TATATAT-TTTGGAAAACA--
1 TATATATATTTAAAAAACATT
* * * *
4037881 TATATATTTTTAAAATATATA
1 TATATATATTTAAAAAACATT
4037902 TATATATAT
1 TATATATAT
4037911 ATATTATATT
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
18 7 0.13
19 7 0.13
21 32 0.59
22 8 0.15
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATATATATTTAAAAAACATT
Found at i:4037847 original size:2 final size:2
Alignment explanation
Indices: 4037793--4037828 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4037783 TAGTTTTGTA
4037793 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4037829 TTAAAAAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4037886 original size:18 final size:17
Alignment explanation
Indices: 4037863--4037904 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
4037853 TAAAATATAT
4037863 TATATATTTTGGAAAACA
1 TATATATTTT-GAAAACA
* *
4037881 TATATATTTTTAAAATA
1 TATATATTTTGAAAACA
4037898 TATATAT
1 TATATAT
4037905 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (17 bp):
TATATATTTTGAAAACA
Found at i:4037906 original size:23 final size:23
Alignment explanation
Indices: 4037793--4037988 Score: 101
Period size: 23 Copynumber: 8.7 Consensus size: 23
4037783 TAGTTTTGTA
* *
4037793 ATATATATATATATAT-ATATAT
1 ATATATATATATATTTAAAATAT
* *
4037815 ATATATATATATATTTAAAAAAC
1 ATATATATATATATTTAAAATAT
* * *
4037838 ATTTATATATTTTTTTAAAATAT
1 ATATATATATATATTTAAAATAT
* *
4037861 AT-TATATAT-T-TTGGAAAACAT
1 ATATATATATATATT-TAAAATAT
* * ** *
4037882 ATATATTTTTA-AAATATATATAT
1 ATATATATATATATTTA-AAATAT
4037905 ATATATATATTATATTTAAAA-AT
1 ATATATATA-TATATTTAAAATAT
*
4037928 ATATATATATAATTTTATTAAAAT-T
1 ATATATATAT-A-TAT-TTAAAATAT
*
4037953 ATATAT-TATAT-TTTGAACATAT
1 ATATATATATATATTT-AAAATAT
4037975 AT-TATA-AT-TATTTA
1 ATATATATATATATTTA
4037989 TTTATTTTTA
Statistics
Matches: 133, Mismatches: 25, Indels: 34
0.69 0.13 0.18
Matches are distributed among these distances:
20 6 0.05
21 22 0.17
22 33 0.25
23 47 0.35
24 9 0.07
25 16 0.12
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATATATATATATTTAAAATAT
Found at i:4037927 original size:31 final size:29
Alignment explanation
Indices: 4037880--4037938 Score: 91
Period size: 31 Copynumber: 2.0 Consensus size: 29
4037870 TTTGGAAAAC
*
4037880 ATATATATTTTTAAAATATATATATATAT
1 ATATATATTTTAAAAATATATATATATAT
4037909 ATATATTATATTTAAAAATATATATATATA
1 ATATA-TAT-TTTAAAAATATATATATATA
4037939 ATTTTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 5 0.19
30 3 0.11
31 19 0.70
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
ATATATATTTTAAAAATATATATATATAT
Found at i:4037957 original size:2 final size:2
Alignment explanation
Indices: 4037895--4037938 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
4037885 TATTTTTAAA
* * *
4037895 AT AT AT AT AT AT AT AT AT AT -T AT AT TT AA AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4037936 AT A
1 AT A
4037939 ATTTTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4037998 original size:6 final size:6
Alignment explanation
Indices: 4037989--4038014 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
4037979 TAATTATTTA
4037989 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
4038015 AAGTCCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:4041272 original size:22 final size:22
Alignment explanation
Indices: 4041247--4041292 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
4041237 ATTAGTTATT
*
4041247 ATATATATGATTTTTATCATGA
1 ATATATATGATGTTTATCATGA
*
4041269 ATATATATGATGTTTATTATGA
1 ATATATATGATGTTTATCATGA
4041291 AT
1 AT
4041293 GTTACTTCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.50
Consensus pattern (22 bp):
ATATATATGATGTTTATCATGA
Found at i:4041551 original size:61 final size:61
Alignment explanation
Indices: 4041472--4041645 Score: 251
Period size: 61 Copynumber: 2.9 Consensus size: 61
4041462 CACCAGGTGC
* * *
4041472 AGGTGGTGGGCACAACCTTATGTGTCATATCCAGATCAACACTAGAGTGTAAACCTAGTGT
1 AGGTGGTGGGCACGACCTTATGTGTCATATCCGGATCAGCACTAGAGTGTAAACCTAGTGT
* *
4041533 AGGTGGTGGGCATGACCTTATGTGTCATATCCGGATCAGCACTA-ATATGTAAACCTAGTGT
1 AGGTGGTGGGCACGACCTTATGTGTCATATCCGGATCAGCACTAGA-GTGTAAACCTAGTGT
* * * *
4041594 AGGTGGTGAGAACGACCTTATGTGTCATATCCGGATTAGCACTAGAGCGTAA
1 AGGTGGTGGGCACGACCTTATGTGTCATATCCGGATCAGCACTAGAGTGTAA
4041646 GCTTAGTATA
Statistics
Matches: 100, Mismatches: 11, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 1 0.01
61 98 0.98
62 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (61 bp):
AGGTGGTGGGCACGACCTTATGTGTCATATCCGGATCAGCACTAGAGTGTAAACCTAGTGT
Found at i:4043459 original size:44 final size:42
Alignment explanation
Indices: 4043376--4043459 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 42
4043366 CAACTCGTAA
*
4043376 TTTGCACAAGTGCCACACAATTATCCCGAAGGAGCACATAGG
1 TTTGCACAAGTGCCACACAATTATCCCGAAGGAGAACATAGG
* * * *
4043418 TTTGCACCGAAGTGCCACATATTTGTCCCGAAGGATAACATA
1 TTTGCA-C-AAGTGCCACACAATTATCCCGAAGGAGAACATA
4043460 AAACCCTCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 6 0.17
43 1 0.03
44 28 0.80
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (42 bp):
TTTGCACAAGTGCCACACAATTATCCCGAAGGAGAACATAGG
Found at i:4044090 original size:53 final size:54
Alignment explanation
Indices: 4044008--4044151 Score: 157
Period size: 53 Copynumber: 2.7 Consensus size: 54
4043998 GATACTACCC
* * * ** *
4044008 TTCAAGGGTATCGATACCTTCTCATGGTACTGATATGAA-ATAATATTCGATGT
1 TTCAAGGGTATCGATACCTCCTCAAGGTACCGATACCAATATAACATTCGATGT
* **
4044061 TTCAAGGGTATCGATACCTCCTCAAGGTACCGATACCAATCTGGCATTCGATGT
1 TTCAAGGGTATCGATACCTCCTCAAGGTACCGATACCAATATAACATTCGATGT
* *
4044115 TTTAAGGGTATCGATACCATCCTTC-AGGTATCGATAC
1 TTCAAGGGTATCGATACC-TCC-TCAAGGTACCGATAC
4044152 TACATTTACA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 34 0.44
54 27 0.35
55 14 0.18
56 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (54 bp):
TTCAAGGGTATCGATACCTCCTCAAGGTACCGATACCAATATAACATTCGATGT
Found at i:4044181 original size:20 final size:20
Alignment explanation
Indices: 4044143--4044191 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
4044133 ATCCTTCAGG
**
4044143 TATCGATACTACATTTACAA
1 TATCGATACTACACATACAA
* *
4044163 TATCGATACTACCCATACAG
1 TATCGATACTACACATACAA
4044183 TATCGATAC
1 TATCGATAC
4044192 CACTATCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (20 bp):
TATCGATACTACACATACAA
Found at i:4050536 original size:21 final size:21
Alignment explanation
Indices: 4050510--4050581 Score: 144
Period size: 21 Copynumber: 3.4 Consensus size: 21
4050500 CATATAGTTT
4050510 GTTCACATTCACTTATTCAAA
1 GTTCACATTCACTTATTCAAA
4050531 GTTCACATTCACTTATTCAAA
1 GTTCACATTCACTTATTCAAA
4050552 GTTCACATTCACTTATTCAAA
1 GTTCACATTCACTTATTCAAA
4050573 GTTCACATT
1 GTTCACATT
4050582 TCCATAACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.39
Consensus pattern (21 bp):
GTTCACATTCACTTATTCAAA
Found at i:4051026 original size:54 final size:54
Alignment explanation
Indices: 4050967--4051097 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
4050957 GATACTACCC
* *
4050967 TTCAAGGGTATCAATACCTCTTAATGGTACCGATACCAAAATAACATTCGATAT
1 TTCAAGGGTATCGATACCTCCTAATGGTACCGATACCAAAATAACATTCGATAT
* * ** *
4051021 TTCAAGGGTATCGATACCTCCTCATGGTACCGATACCAATATGGCATTCGATGT
1 TTCAAGGGTATCGATACCTCCTAATGGTACCGATACCAAAATAACATTCGATAT
*
4051075 TTTAAGGGTATCGATACCATCCT
1 TTCAAGGGTATCGATACC-TCCT
4051098 TCAGCTATCG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
54 64 0.94
55 4 0.06
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (54 bp):
TTCAAGGGTATCGATACCTCCTAATGGTACCGATACCAAAATAACATTCGATAT
Found at i:4051108 original size:20 final size:20
Alignment explanation
Indices: 4051082--4051131 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
4051072 TGTTTTAAGG
*
4051082 GTATCGATACCATCCTT-CA
1 GTATCGATACCACCCTTACA
*
4051101 GCTATCGATACTACCCTTACA
1 G-TATCGATACCACCCTTACA
4051122 GTATCGATAC
1 GTATCGATAC
4051132 AACTATCAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 1 0.04
20 23 0.85
21 3 0.11
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (20 bp):
GTATCGATACCACCCTTACA
Found at i:4067314 original size:20 final size:20
Alignment explanation
Indices: 4067289--4067329 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
4067279 TAAGAGCAAT
*
4067289 TTTAGGATCATATAGATGCA
1 TTTAGGAGCATATAGATGCA
*
4067309 TTTAGGAGCATATAGTTGCA
1 TTTAGGAGCATATAGATGCA
4067329 T
1 T
4067330 GTGGTGGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (20 bp):
TTTAGGAGCATATAGATGCA
Found at i:4071121 original size:85 final size:85
Alignment explanation
Indices: 4070978--4071146 Score: 302
Period size: 85 Copynumber: 2.0 Consensus size: 85
4070968 TAATCAACTA
4070978 TATCCACATTGTTAACCTAGGAGTAACCATACTAACCCTAACACTACCATCTAAGATCATTATAA
1 TATCCACATTGTTAACCTAGGAGTAACCATACTAACCCTAACACTACCATCTAAGATCATTATAA
*
4071043 ATACCCCTCATTCACGACTC
66 ATACACCTCATTCACGACTC
* *
4071063 TATCCACATTGTTAACCTAGGAGTAGCCATACTAACCCTAACATTACCATCTAAGATCATTATAA
1 TATCCACATTGTTAACCTAGGAGTAACCATACTAACCCTAACACTACCATCTAAGATCATTATAA
*
4071128 GTACACCTCATTCACGACT
66 ATACACCTCATTCACGACT
4071147 GAAGAGGGGA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.28
Consensus pattern (85 bp):
TATCCACATTGTTAACCTAGGAGTAACCATACTAACCCTAACACTACCATCTAAGATCATTATAA
ATACACCTCATTCACGACTC
Found at i:4071489 original size:14 final size:14
Alignment explanation
Indices: 4071470--4071506 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4071460 ATAGGATACC
4071470 TATATATTATAATA
1 TATATATTATAATA
*
4071484 TATATAGTATAATA
1 TATATATTATAATA
4071498 TATTATATT
1 TA-TATATT
4071507 GTTATATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (14 bp):
TATATATTATAATA
Found at i:4071651 original size:26 final size:24
Alignment explanation
Indices: 4071615--4071669 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
4071605 TAATAAATAA
* *
4071615 ATATTAGTTATTTTATACAT-TATT
1 ATATTAGTTATATTA-AAATATATT
4071639 ATATATAGTTTATATTAAAATATATT
1 ATAT-TAG-TTATATTAAAATATATT
4071665 ATATT
1 ATATT
4071670 TTTTAAAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 7 0.27
26 15 0.58
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (24 bp):
ATATTAGTTATATTAAAATATATT
Found at i:4071721 original size:18 final size:18
Alignment explanation
Indices: 4071698--4071750 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
4071688 GAATATCAGT
4071698 GTATATATATTTTATAAA
1 GTATATATATTTTATAAA
4071716 GTATATAT-TTTTAATAAA
1 GTATATATATTTT-ATAAA
*
4071734 -TATTATATATTTAATAA
1 GTA-TATATATTTTATAA
4071751 TAGCATTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 6 0.19
18 22 0.71
19 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
GTATATATATTTTATAAA
Found at i:4076553 original size:18 final size:18
Alignment explanation
Indices: 4076530--4076571 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
4076520 AAATAGGTAT
4076530 TGATACCCAAAGGAGTAC
1 TGATACCCAAAGGAGTAC
4076548 TGATACCCAAAGGAGTAC
1 TGATACCCAAAGGAGTAC
*
4076566 CGATAC
1 TGATAC
4076572 TACTTCACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (18 bp):
TGATACCCAAAGGAGTAC
Found at i:4079817 original size:9 final size:9
Alignment explanation
Indices: 4079803--4079828 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4079793 TAATTGAATT
4079803 TTTTCAAAG
1 TTTTCAAAG
4079812 TTTTCAAAG
1 TTTTCAAAG
4079821 TTTTCAAA
1 TTTTCAAA
4079829 AATAATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (9 bp):
TTTTCAAAG
Found at i:4080261 original size:20 final size:20
Alignment explanation
Indices: 4080224--4080262 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4080214 TTTGCAGAGA
*
4080224 AAATATCCCCAAATGGCTAG
1 AAATATCCCCAAACGGCTAG
4080244 AAATCATCCCC-AACGGCTA
1 AAAT-ATCCCCAAACGGCTA
4080263 TAAACGACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (20 bp):
AAATATCCCCAAACGGCTAG
Found at i:4080854 original size:2 final size:2
Alignment explanation
Indices: 4080845--4081109 Score: 226
Period size: 2 Copynumber: 135.0 Consensus size: 2
4080835 CACACTTATT
* * * * * * *
4080845 TA TA -A TA TA TA TA TA CA TA TA TG TA TG TG TA TA TA TC TG CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
4080886 TA -A GTA TA TA -A GTA CA TA TA TG TA TG TA TA TA TA TA T- TA -A
1 TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
4080926 AA T- TA TA TG TA TA TA CA TA TA TA -A GTA TA TA TA TG CA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * * *
4080967 TGA TG CA TA TT TA TA -A GTA TA TA TA TA TA TA TA TC TA TA TA TA
1 T-A TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
4081010 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4081052 TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4081093 TA TA TA TC TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA
4081110 CTTATACATT
Statistics
Matches: 210, Mismatches: 38, Indels: 30
0.76 0.14 0.11
Matches are distributed among these distances:
1 10 0.05
2 194 0.92
3 6 0.03
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (2 bp):
TA
Found at i:4080902 original size:40 final size:39
Alignment explanation
Indices: 4080846--4081109 Score: 144
Period size: 37 Copynumber: 6.8 Consensus size: 39
4080836 ACACTTATTT
*
4080846 ATAATATATATATACATATATGTATGTGTATATATCTGC
1 ATAATATATATATACATATATGTATGTATATATATCTGC
* *
4080885 ATAAGTATATA-AGTACATATATGTATGTATATATATAT-T
1 ATAA-TATATATA-TACATATATGTATGTATATATATCTGC
* * *
4080924 AAAATTATATGTATATACATATA--TAAGTATATATATGCATGT
1 ATAA-TATA--TATATACATATATGTATGTATATATAT-C-TGC
* * *
4080966 ATGATGCATATTTATA-AGTATA--TATATATATATATCT--
1 ATAAT--ATATATATACA-TATATGTATGTATATATATCTGC
* * * *
4081003 ATATATATATATATATATATATATATATATATATATAT--
1 ATA-ATATATATATACATATATGTATGTATATATATCTGC
* * *
4081041 ATATATATATATATATATATAT-TATATATATATATAT--
1 ATA-ATATATATATACATATATGTATGTATATATATCTGC
* *
4081078 ATATATATATATATATATATATCTAT-TATATA
1 ATA-ATATATATATACATATATGTATGTATATA
4081110 CTTATACATT
Statistics
Matches: 194, Mismatches: 15, Indels: 34
0.80 0.06 0.14
Matches are distributed among these distances:
36 12 0.06
37 46 0.24
38 41 0.21
39 25 0.13
40 31 0.16
41 32 0.16
42 4 0.02
43 3 0.02
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (39 bp):
ATAATATATATATACATATATGTATGTATATATATCTGC
Found at i:4081252 original size:16 final size:15
Alignment explanation
Indices: 4081231--4081262 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
4081221 TACATAGGAC
4081231 TAATCAAATTATAATT
1 TAATCAAATT-TAATT
4081247 TAATCAAATTTAATT
1 TAATCAAATTTAATT
4081262 T
1 T
4081263 TTAAAAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATCAAATTTAATT
Found at i:4081299 original size:16 final size:16
Alignment explanation
Indices: 4081252--4081310 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
4081242 TAATTTAATC
*
4081252 AAATT-TAATTTTTAA
1 AAATTATAATTATTAA
* * * *
4081267 AAAGTAAAAATAATAA
1 AAATTATAATTATTAA
4081283 AAATTATAATTATTAA
1 AAATTATAATTATTAA
4081299 AAACTTA-AATTA
1 AAA-TTATAATTA
4081311 AAAAAATATT
Statistics
Matches: 33, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
15 4 0.12
16 26 0.79
17 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (16 bp):
AAATTATAATTATTAA
Found at i:4081316 original size:31 final size:31
Alignment explanation
Indices: 4081252--4081317 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
4081242 TAATTTAATC
* *
4081252 AAATTTAATTTTTAAAAAGTAAAAATAATAA
1 AAATTTAATTATTAAAAACTAAAAATAATAA
* *
4081283 AAATTATAATTATTAAAAACTTAAATTAA-AA
1 AAATT-TAATTATTAAAAACTAAAAATAATAA
4081314 AAAT
1 AAAT
4081318 ATTATACATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 11 0.37
32 19 0.63
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (31 bp):
AAATTTAATTATTAAAAACTAAAAATAATAA
Found at i:4081933 original size:25 final size:25
Alignment explanation
Indices: 4081881--4081948 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
4081871 TGTTGCTAGA
4081881 CTCGTTGCTTGTTAAG-TCGTTAAG
1 CTCGTTGCTTGTTAAGCTCGTTAAG
* *
4081905 CTCGTTGCTTGTCAAGCTTGTTAAG
1 CTCGTTGCTTGTTAAGCTCGTTAAG
*
4081930 CTCGTTGCTCGTTAAGCTC
1 CTCGTTGCTTGTTAAGCTC
4081949 ACCAAAGATT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
24 15 0.39
25 23 0.61
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.40
Consensus pattern (25 bp):
CTCGTTGCTTGTTAAGCTCGTTAAG
Found at i:4081948 original size:9 final size:9
Alignment explanation
Indices: 4081891--4081948 Score: 54
Period size: 9 Copynumber: 7.0 Consensus size: 9
4081881 CTCGTTGCTT
4081891 GTTAAG-TC
1 GTTAAGCTC
4081899 GTTAAGCTC
1 GTTAAGCTC
*
4081908 GTT--GCTT
1 GTTAAGCTC
* *
4081915 GTCAAGCTT
1 GTTAAGCTC
4081924 GTTAAGCTC
1 GTTAAGCTC
4081933 GTT--GCTC
1 GTTAAGCTC
4081940 GTTAAGCTC
1 GTTAAGCTC
4081949 ACCAAAGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
7 12 0.29
8 6 0.15
9 23 0.56
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (9 bp):
GTTAAGCTC
Found at i:4082195 original size:27 final size:28
Alignment explanation
Indices: 4082147--4082201 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
4082137 GTAGTAAAAA
* * *
4082147 TAATTATTAATTAGTAATTTAATATATT
1 TAATCATTAATTAGAAAATTAATATATT
4082175 TAATCATT-ATTAGAAAATTAATATATT
1 TAATCATTAATTAGAAAATTAATATATT
4082202 ATTAATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (28 bp):
TAATCATTAATTAGAAAATTAATATATT
Found at i:4082517 original size:77 final size:77
Alignment explanation
Indices: 4082368--4082525 Score: 219
Period size: 77 Copynumber: 2.1 Consensus size: 77
4082358 TAGACATTAA
* ** *
4082368 AAGAGTTTAAATAAACGTTAAAGAATGTAATTTTGATTACAACTCTTTTAATCGATATTTAGTTA
1 AAGAGTTTAAATAAACGTTAAAGAATATAATTCAGATTACAACTCTTTTAATCGATATTTAATTA
4082433 GAATAATTAAAT
66 GAATAATTAAAT
* * * * *
4082445 AAGAGTTTAAATAAACGTTAAAGATTATAATTCAGATTATAAGTC-TTTAATGGATATTTAATTT
1 AAGAGTTTAAATAAACGTTAAAGAATATAATTCAGATTACAACTCTTTTAATCGATATTTAATTA
4082509 GAATTAATTAAAT
66 GAA-TAATTAAAT
4082522 AAGA
1 AAGA
4082526 TTTTTTATTG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
76 19 0.27
77 52 0.73
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (77 bp):
AAGAGTTTAAATAAACGTTAAAGAATATAATTCAGATTACAACTCTTTTAATCGATATTTAATTA
GAATAATTAAAT
Found at i:4091360 original size:195 final size:195
Alignment explanation
Indices: 4091028--4091417 Score: 780
Period size: 195 Copynumber: 2.0 Consensus size: 195
4091018 AGTTTAGGTG
4091028 GAGTTACTTTATAGAGGTTTTTGACTATAGCCTCATGCTTTCTTTTTATGGATGATACTCGACAT
1 GAGTTACTTTATAGAGGTTTTTGACTATAGCCTCATGCTTTCTTTTTATGGATGATACTCGACAT
4091093 TTTTTAGATGCTTGAATAAGCTCGGGGGATATGATTTCCCGATATATGTATATATTTTCTGTGGA
66 TTTTTAGATGCTTGAATAAGCTCGGGGGATATGATTTCCCGATATATGTATATATTTTCTGTGGA
4091158 GGATACTTAATGTTTTATTAAGGCCTTGGACGAATTTTCTTATTTTTTACATATGTATCTTTATC
131 GGATACTTAATGTTTTATTAAGGCCTTGGACGAATTTTCTTATTTTTTACATATGTATCTTTATC
4091223 GAGTTACTTTATAGAGGTTTTTGACTATAGCCTCATGCTTTCTTTTTATGGATGATACTCGACAT
1 GAGTTACTTTATAGAGGTTTTTGACTATAGCCTCATGCTTTCTTTTTATGGATGATACTCGACAT
4091288 TTTTTAGATGCTTGAATAAGCTCGGGGGATATGATTTCCCGATATATGTATATATTTTCTGTGGA
66 TTTTTAGATGCTTGAATAAGCTCGGGGGATATGATTTCCCGATATATGTATATATTTTCTGTGGA
4091353 GGATACTTAATGTTTTATTAAGGCCTTGGACGAATTTTCTTATTTTTTACATATGTATCTTTATC
131 GGATACTTAATGTTTTATTAAGGCCTTGGACGAATTTTCTTATTTTTTACATATGTATCTTTATC
4091418 TATTTTGGTT
Statistics
Matches: 195, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
195 195 1.00
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (195 bp):
GAGTTACTTTATAGAGGTTTTTGACTATAGCCTCATGCTTTCTTTTTATGGATGATACTCGACAT
TTTTTAGATGCTTGAATAAGCTCGGGGGATATGATTTCCCGATATATGTATATATTTTCTGTGGA
GGATACTTAATGTTTTATTAAGGCCTTGGACGAATTTTCTTATTTTTTACATATGTATCTTTATC
Found at i:4092437 original size:114 final size:114
Alignment explanation
Indices: 4092237--4092464 Score: 456
Period size: 114 Copynumber: 2.0 Consensus size: 114
4092227 TTCAGCTGCT
4092237 GCCATGTAGTCAGCTTCAGTTGCAGCTGATGCCACAATAGATTGAATAGTAGACTTCCAATAAAT
1 GCCATGTAGTCAGCTTCAGTTGCAGCTGATGCCACAATAGATTGAATAGTAGACTTCCAATAAAT
4092302 AGGCCCTCTATCAAGAGTAAAGATATACCCTATCGTAGATCTTCTATTA
66 AGGCCCTCTATCAAGAGTAAAGATATACCCTATCGTAGATCTTCTATTA
4092351 GCCATGTAGTCAGCTTCAGTTGCAGCTGATGCCACAATAGATTGAATAGTAGACTTCCAATAAAT
1 GCCATGTAGTCAGCTTCAGTTGCAGCTGATGCCACAATAGATTGAATAGTAGACTTCCAATAAAT
4092416 AGGCCCTCTATCAAGAGTAAAGATATACCCTATCGTAGATCTTCTATTA
66 AGGCCCTCTATCAAGAGTAAAGATATACCCTATCGTAGATCTTCTATTA
4092465 TCCAAGTCAC
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (114 bp):
GCCATGTAGTCAGCTTCAGTTGCAGCTGATGCCACAATAGATTGAATAGTAGACTTCCAATAAAT
AGGCCCTCTATCAAGAGTAAAGATATACCCTATCGTAGATCTTCTATTA
Found at i:4097398 original size:21 final size:21
Alignment explanation
Indices: 4097372--4097411 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4097362 TAGAACCCCA
*
4097372 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
4097393 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
4097412 TCAAAGGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:4100109 original size:22 final size:22
Alignment explanation
Indices: 4100081--4100131 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
4100071 TTAGTACTTA
4100081 AGAATAGAACCCAAATATATCT
1 AGAATAGAACCCAAATATATCT
* *
4100103 AGAATAGAACTCAAGTATATCT
1 AGAATAGAACCCAAATATATCT
4100125 AGAATAG
1 AGAATAG
4100132 TCATCTACCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (22 bp):
AGAATAGAACCCAAATATATCT
Found at i:4101712 original size:6 final size:6
Alignment explanation
Indices: 4101701--4101732 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
4101691 TGTCATTTCC
*
4101701 TCGTCA TCGTCA TCGTCA TCGTCA TCTTCA TC
1 TCGTCA TCGTCA TCGTCA TCGTCA TCGTCA TC
4101733 CGAATCACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.34, G:0.12, T:0.38
Consensus pattern (6 bp):
TCGTCA
Found at i:4108448 original size:12 final size:12
Alignment explanation
Indices: 4108431--4108496 Score: 84
Period size: 12 Copynumber: 5.8 Consensus size: 12
4108421 GCTCAATTGA
4108431 AGCTCGATTTTG
1 AGCTCGATTTTG
**
4108443 AGCTCGA-TTCA
1 AGCTCGATTTTG
4108454 AGCTCGATTTTG
1 AGCTCGATTTTG
*
4108466 AGCTC-A-TTCG
1 AGCTCGATTTTG
4108476 AGCTCGATTTTG
1 AGCTCGATTTTG
4108488 AGCTCGATT
1 AGCTCGATT
4108497 CAAGCTCGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
10 8 0.18
11 11 0.24
12 26 0.58
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (12 bp):
AGCTCGATTTTG
Found at i:4108456 original size:23 final size:23
Alignment explanation
Indices: 4108395--4108507 Score: 147
Period size: 23 Copynumber: 4.9 Consensus size: 23
4108385 AAAAATTCAA
* ** *
4108395 GAGCTCGATTGAAGCTCGAGACTC
1 GAGCTCGATTCAAGCTCGA-TTTT
* *
4108419 GAGCTCAATTGAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
4108442 GAGCTCGATTCAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
*
4108465 GAGCTC-ATTCGAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
4108487 GAGCTCGATTCAAGCTCGATT
1 GAGCTCGATTCAAGCTCGATT
4108508 CAAGCTCGAA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.26
23 41 0.51
24 18 0.22
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGATTTT
Found at i:4108493 original size:45 final size:46
Alignment explanation
Indices: 4108395--4108507 Score: 158
Period size: 45 Copynumber: 2.5 Consensus size: 46
4108385 AAAAATTCAA
* **
4108395 GAGCTCGATTGAAGCTCGAGACTCGAGCTCAATTGAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGA-TTTCGAGCTCAATTGAAGCTCGATTTT
*
4108442 GAGCTCGATTCAAGCTCGATTTTGAGCTC-ATTCG-AGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTCGAGCTCAATT-GAAGCTCGATTTT
4108487 GAGCTCGATTCAAGCTCGATT
1 GAGCTCGATTCAAGCTCGATT
4108508 CAAGCTCGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
45 35 0.57
46 8 0.13
47 18 0.30
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (46 bp):
GAGCTCGATTCAAGCTCGATTTCGAGCTCAATTGAAGCTCGATTTT
Found at i:4108508 original size:11 final size:11
Alignment explanation
Indices: 4108396--4108516 Score: 82
Period size: 11 Copynumber: 10.6 Consensus size: 11
4108386 AAAATTCAAG
*
4108396 AGCTCGATTGA
1 AGCTCGATTCA
* *
4108407 AGCTCGAGACTCG
1 AGCTC--GATTCA
* *
4108420 AGCTCAATTGA
1 AGCTCGATTCA
**
4108431 AGCTCGATTTTG
1 AGCTCGA-TTCA
4108443 AGCTCGATTCA
1 AGCTCGATTCA
**
4108454 AGCTCGATTTTG
1 AGCTCGA-TTCA
*
4108466 AGCTC-ATTCG
1 AGCTCGATTCA
**
4108476 AGCTCGATTTTG
1 AGCTCGA-TTCA
4108488 AGCTCGATTCA
1 AGCTCGATTCA
4108499 AGCTCGATTCA
1 AGCTCGATTCA
4108510 AGCTCGA
1 AGCTCGA
4108517 ACTCGATTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
10 8 0.09
11 44 0.51
12 26 0.30
13 8 0.09
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (11 bp):
AGCTCGATTCA
Found at i:4108523 original size:17 final size:17
Alignment explanation
Indices: 4108501--4108537 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
4108491 TCGATTCAAG
* *
4108501 CTCGATTCAAGCTCGAA
1 CTCGATTAAAACTCGAA
4108518 CTCGATTAAAACTCGAA
1 CTCGATTAAAACTCGAA
4108535 CTC
1 CTC
4108538 AAACTCGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (17 bp):
CTCGATTAAAACTCGAA
Found at i:4108886 original size:23 final size:24
Alignment explanation
Indices: 4108841--4108909 Score: 90
Period size: 23 Copynumber: 3.0 Consensus size: 24
4108831 TCCTGACACA
4108841 CACAAA-AAGGGACAGAGCACCAAG
1 CACAAACAAGGGACA-AGCACCAAG
4108865 CACAAACAAGGGAC-AGCACCAAG
1 CACAAACAAGGGACAAGCACCAAG
* *
4108888 CAAAAACAA-GGACAAGAACCAA
1 CACAAACAAGGGACAAGCACCAA
4108910 ACACCGAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
22 4 0.10
23 24 0.59
24 6 0.15
25 7 0.17
ACGTcount: A:0.54, C:0.26, G:0.20, T:0.00
Consensus pattern (24 bp):
CACAAACAAGGGACAAGCACCAAG
Found at i:4109333 original size:16 final size:16
Alignment explanation
Indices: 4109312--4109343 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4109302 GTATTTGTCC
4109312 ACTCACCTTAAATCAA
1 ACTCACCTTAAATCAA
4109328 ACTCACCTTAAATCAA
1 ACTCACCTTAAATCAA
4109344 TCAAAGGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (16 bp):
ACTCACCTTAAATCAA
Found at i:4110617 original size:21 final size:21
Alignment explanation
Indices: 4110592--4110664 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
4110582 TGGCATAACT
4110592 TAAACCCTAACACATAAACCC
1 TAAACCCTAACACATAAACCC
* * *
4110613 TAAACTCTAA-ACTTTAAACCT
1 TAAACCCTAACAC-ATAAACCC
* * *
4110634 TAAATCCTATCACATAAACTC
1 TAAACCCTAACACATAAACCC
*
4110655 TAAATCCTAA
1 TAAACCCTAA
4110665 ACCCTAAACC
Statistics
Matches: 40, Mismatches: 10, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
20 2 0.05
21 36 0.90
22 2 0.05
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAACCCTAACACATAAACCC
Found at i:4110623 original size:14 final size:13
Alignment explanation
Indices: 4110588--4110673 Score: 55
Period size: 14 Copynumber: 6.2 Consensus size: 13
4110578 TTCATGGCAT
4110588 AACTTAAACCCTA
1 AACTTAAACCCTA
*
4110601 ACACATAAACCCTA
1 A-ACTTAAACCCTA
**
4110615 AACTCTAAACTTTA
1 AACT-TAAACCCTA
*
4110629 AACCTTAAATCCTA
1 AA-CTTAAACCCTA
* * *
4110643 TCACATAAACTCTA
1 -AACTTAAACCCTA
*
4110657 AATCCTAAACCCTA
1 AA-CTTAAACCCTA
4110671 AAC
1 AAC
4110674 CTTATCACAT
Statistics
Matches: 54, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
13 5 0.09
14 46 0.85
15 3 0.06
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (13 bp):
AACTTAAACCCTA
Found at i:4110637 original size:42 final size:42
Alignment explanation
Indices: 4110590--4110677 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
4110580 CATGGCATAA
**
4110590 CTTAAACCCTAACACATAAACCCTAAA-CTCTAAACTTTAAAC
1 CTTAAACCCTAACACATAAACCCTAAATC-CTAAACCCTAAAC
* * *
4110632 CTTAAATCCTATCACATAAACTCTAAATCCTAAACCCTAAAC
1 CTTAAACCCTAACACATAAACCCTAAATCCTAAACCCTAAAC
4110674 CTTA
1 CTTA
4110678 TCACATAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.26
Consensus pattern (42 bp):
CTTAAACCCTAACACATAAACCCTAAATCCTAAACCCTAAAC
Found at i:4110652 original size:35 final size:35
Alignment explanation
Indices: 4110613--4110685 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
4110603 ACATAAACCC
* *
4110613 TAAACTCTAAA-CTTTAAACCTTAAATCC-TATCACA
1 TAAACTCTAAATC-CTAAACCCTAAA-CCTTATCACA
4110648 TAAACTCTAAATCCTAAACCCTAAACCTTATCACA
1 TAAACTCTAAATCCTAAACCCTAAACCTTATCACA
4110683 TAA
1 TAA
4110686 TTAGTTATGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 2 0.06
35 31 0.91
36 1 0.03
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (35 bp):
TAAACTCTAAATCCTAAACCCTAAACCTTATCACA
Found at i:4110949 original size:14 final size:14
Alignment explanation
Indices: 4110932--4110972 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
4110922 TTTATTCATC
4110932 AATAATGTATTTTT
1 AATAATGTATTTTT
4110946 AAT-A--TATTTTT
1 AATAATGTATTTTT
*
4110957 AATAATGTAATTTT
1 AATAATGTATTTTT
4110971 AA
1 AA
4110973 AAAATATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 1 0.04
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (14 bp):
AATAATGTATTTTT
Found at i:4111074 original size:5 final size:5
Alignment explanation
Indices: 4111064--4111097 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
4111054 CGTTAAGAAA
4111064 TCGAG TCGAG TTCGAG CTCGAG TCGAG TCGAG TC
1 TCGAG TCGAG -TCGAG -TCGAG TCGAG TCGAG TC
4111098 CATTCAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
5 17 0.63
6 10 0.37
ACGTcount: A:0.18, C:0.24, G:0.35, T:0.24
Consensus pattern (5 bp):
TCGAG
Found at i:4111086 original size:17 final size:16
Alignment explanation
Indices: 4111064--4111095 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
4111054 CGTTAAGAAA
4111064 TCGAGTCGAGTTCGAGC
1 TCGAGTCGAG-TCGAGC
4111081 TCGAGTCGAGTCGAG
1 TCGAGTCGAGTCGAG
4111096 TCCATTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.22, G:0.38, T:0.22
Consensus pattern (16 bp):
TCGAGTCGAGTCGAGC
Found at i:4116339 original size:16 final size:16
Alignment explanation
Indices: 4116320--4116360 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
4116310 TACCGATCCA
* *
4116320 ATATTGATCAGTCCCG
1 ATATTGACCAGACCCG
*
4116336 ATATTGACCCGACCCG
1 ATATTGACCAGACCCG
4116352 ATATTGACC
1 ATATTGACC
4116361 CAACCCAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (16 bp):
ATATTGACCAGACCCG
Found at i:4116361 original size:16 final size:16
Alignment explanation
Indices: 4116332--4116366 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
4116322 ATTGATCAGT
*
4116332 CCCGATATTGACCCGA
1 CCCGATATTGACCCAA
4116348 CCCGATATTGACCCAA
1 CCCGATATTGACCCAA
4116364 CCC
1 CCC
4116367 AAAAATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.43, G:0.14, T:0.17
Consensus pattern (16 bp):
CCCGATATTGACCCAA
Found at i:4116385 original size:32 final size:31
Alignment explanation
Indices: 4116349--4116426 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 31
4116339 TTGACCCGAC
4116349 CCGATATTGACCCAACCCAAAAATCAACCAAT
1 CCGATATTGACCCAACCCAAAAA-CAACCAAT
* * **
4116381 CCGATATTGATCCGAACCGAAAAACAACTGAT
1 CCGATATTGA-CCCAACCCAAAAACAACCAAT
*
4116413 CTGATACTTGACCC
1 CCGATA-TTGACCC
4116427 GATTTACCGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
32 23 0.61
33 15 0.39
ACGTcount: A:0.38, C:0.31, G:0.12, T:0.19
Consensus pattern (31 bp):
CCGATATTGACCCAACCCAAAAACAACCAAT
Found at i:4117546 original size:36 final size:38
Alignment explanation
Indices: 4117479--4117591 Score: 151
Period size: 36 Copynumber: 3.0 Consensus size: 38
4117469 ACTGAAACTA
** *
4117479 CTTGATGAATTCGCGTAAAAAAATATGTAATAATCTTT
1 CTTGATGAATTCATGTAAAAAAATATTTAATAATCTTT
4117517 -TTGATGAATTCATGT-AAAAAATATTTAATAAT-TTT
1 CTTGATGAATTCATGTAAAAAAATATTTAATAATCTTT
*
4117552 CTTGATGAGTTCATGTTAAAAAATATATTTAATAATCTTT
1 CTTGATGAATTCATG-TAAAAAA-ATATTTAATAATCTTT
4117592 GTAAGTGACA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
35 3 0.05
36 29 0.44
37 14 0.21
38 5 0.08
39 12 0.18
40 3 0.05
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (38 bp):
CTTGATGAATTCATGTAAAAAAATATTTAATAATCTTT
Found at i:4118520 original size:13 final size:13
Alignment explanation
Indices: 4118502--4118527 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4118492 TATGTTTCAG
4118502 AACATTGAATGTC
1 AACATTGAATGTC
4118515 AACATTGAATGTC
1 AACATTGAATGTC
4118528 TATCTCCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AACATTGAATGTC
Found at i:4119751 original size:45 final size:45
Alignment explanation
Indices: 4119696--4119842 Score: 258
Period size: 45 Copynumber: 3.3 Consensus size: 45
4119686 ATTATTCATT
* * *
4119696 ATTTCTTTTATGGCATCCTTTCATGTCTTTAGTGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACTGTTATGC
4119741 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACTGTTATGC
*
4119786 ATTTCATTTATGGCATTCTTTCATGCCTTTAATGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACTGTTATGC
4119831 ATTTCATTTATG
1 ATTTCATTTATG
4119843 CAATGAAAAC
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 98 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.48
Consensus pattern (45 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACTGTTATGC
Found at i:4120311 original size:20 final size:20
Alignment explanation
Indices: 4120282--4120330 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
4120272 TAATTCATGG
4120282 TATCGATACCTTTCTCTCAA
1 TATCGATACCTTTCTCTCAA
* *
4120302 TATTGATACCTTTCTCTCAG
1 TATCGATACCTTTCTCTCAA
4120322 TATCGATAC
1 TATCGATAC
4120331 TACTATACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (20 bp):
TATCGATACCTTTCTCTCAA
Found at i:4126525 original size:45 final size:45
Alignment explanation
Indices: 4126457--4126783 Score: 485
Period size: 45 Copynumber: 7.3 Consensus size: 45
4126447 ATTATTCATT
* *
4126457 ATTTCCATTTATGGCATCCTTTCATGCATTTAATGCACTGTTATGC
1 ATTT-CATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* ** * *
4126503 ATTTCATTTATGACATAATTTCATACATTTAATGCACCGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* *
4126548 ATTTTATTTATGGCATCCTTTTATGCCTTTAATGCACCGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* *
4126593 ATTTCATTTATGACATCCTTTCATGCCTTTAATGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* * *
4126638 ATTTCATTTATGGCATCCTTTTATGCCTTTTATGCACCGTTATGA
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
*
4126683 ATTTTATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
* *
4126728 ATTTCATTTATGGCA-CATTTCATGCCTTTAATGCACTGTTATGC
1 ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
4126772 ATTTCATTTATG
1 ATTTCATTTATG
4126784 TAATGAAAAC
Statistics
Matches: 253, Mismatches: 28, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 39 0.15
45 210 0.83
46 4 0.02
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (45 bp):
ATTTCATTTATGGCATCCTTTCATGCCTTTAATGCACCGTTATGC
Found at i:4127339 original size:94 final size:94
Alignment explanation
Indices: 4127160--4127329 Score: 215
Period size: 94 Copynumber: 1.8 Consensus size: 94
4127150 TCGATACTTT
**
4127160 TATACTATGGTACCGATACCCCATTTCAGTGTCGATACCATTTCTACATTCTGTAATTCATGGTA
1 TATACTATGGTACCGATACCCCATTTCAGCATCGATACCATTTCTACATTCTGTAATTCATGGTA
4127225 TCGATACCTTTCTCTCAGTATGATACTAC
66 TCGATACCTTTCTCTCAGTATGATACTAC
* * * *
4127254 TATATTATGGTATCGATACTCCC-TTTCAGCATTGATACCATTT-TGGCATTCTAG-AA-TCTAT
1 TATACTATGGTACCGATAC-CCCATTTCAGCATCGATACCATTTCT-ACATTCT-GTAATTC-AT
4127315 GGTATCGATA-CTTTC
62 GGTATCGATACCTTTC
4127330 CTTTTAGTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
93 8 0.12
94 54 0.82
95 4 0.06
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (94 bp):
TATACTATGGTACCGATACCCCATTTCAGCATCGATACCATTTCTACATTCTGTAATTCATGGTA
TCGATACCTTTCTCTCAGTATGATACTAC
Found at i:4133286 original size:31 final size:32
Alignment explanation
Indices: 4133229--4133289 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
4133219 GTTGAAGCAT
*
4133229 CCTCTAGTCCCCATGTTACAATACTCTTGGGG
1 CCTCTAGTCCCCATGTTACAACACTCTTGGGG
*
4133261 CCTCTAGT-CCCATGTTGGC-ACACTCTTGG
1 CCTCTAGTCCCCATGTT-ACAACACTCTTGG
4133290 ATGACTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 17 0.65
32 9 0.35
ACGTcount: A:0.16, C:0.33, G:0.20, T:0.31
Consensus pattern (32 bp):
CCTCTAGTCCCCATGTTACAACACTCTTGGGG
Found at i:4138354 original size:297 final size:298
Alignment explanation
Indices: 4137820--4138414 Score: 1183
Period size: 297 Copynumber: 2.0 Consensus size: 298
4137810 CAGTTATCTA
4137820 GCAATAGTATGTCGACGGTGCATATGTCTCACTTATCATTATATATTACATTTTGTGCTCTATCA
1 GCAATAGTATGTCGACGGTGCATATGTCTCACTTATCATTATATATTACATTTTGTGCTCTATCA
4137885 ATAATTGTTTGGTTATCACAATATATACATATTATGGACACAAACTTTGACCATTCGAGAATATA
66 ATAATTGTTTGGTTATCACAATATATACATATTATGGACACAAACTTTGACCATTCGAGAATATA
4137950 CTGTAAGAAGTTTCGTAGTCATTTTGTCTTTTTCCTAGAATTGTCTAGAGTTATAAACTCATATT
131 CTGTAAGAAGTTTCGTAGTCATTTTGTCTTTTTCCTAGAATTGTCTAGAGTTATAAACTCATATT
4138015 CTATTATGGATTTGGTTATAATCGTTTGTCTTGAGGATTTTCATGACACAATTCCTCTCAAAGTG
196 CTATTATGGATTTGGTTATAATCGTTTGTCTTGAGGATTTTCATGACACAATTCCTCTCAAAGTG
4138080 AAAATATACCAACTTATACCTTTAGTG-TTTGAATATT
261 AAAATATACCAACTTATACCTTTAGTGTTTTGAATATT
4138117 GCAATAGTATGTCGACGGTGCATATGTCTCACTTATCATTATATATTACATTTTGTGCTCTATCA
1 GCAATAGTATGTCGACGGTGCATATGTCTCACTTATCATTATATATTACATTTTGTGCTCTATCA
4138182 ATAATTGTTTGGTTATCACAATATATACATATTATGGACACAAACTTTGACCATTCGAGAATATA
66 ATAATTGTTTGGTTATCACAATATATACATATTATGGACACAAACTTTGACCATTCGAGAATATA
4138247 CTGTAAGAAGTTTCGTAGTCATTTTGTCTTTTTCCTAGAATTGTCTAGAGTTATAAACTCATATT
131 CTGTAAGAAGTTTCGTAGTCATTTTGTCTTTTTCCTAGAATTGTCTAGAGTTATAAACTCATATT
4138312 CTATTATGGATTTGGTTATAATCGTTTGTCTTGAGGATTTTCATGACACAATTCCTCTCAAAGTG
196 CTATTATGGATTTGGTTATAATCGTTTGTCTTGAGGATTTTCATGACACAATTCCTCTCAAAGTG
4138377 AAAATATACCAACTTATACCTTTAGTGTTTTGAATATT
261 AAAATATACCAACTTATACCTTTAGTGTTTTGAATATT
4138415 AGATATACAA
Statistics
Matches: 297, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
297 287 0.97
298 10 0.03
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (298 bp):
GCAATAGTATGTCGACGGTGCATATGTCTCACTTATCATTATATATTACATTTTGTGCTCTATCA
ATAATTGTTTGGTTATCACAATATATACATATTATGGACACAAACTTTGACCATTCGAGAATATA
CTGTAAGAAGTTTCGTAGTCATTTTGTCTTTTTCCTAGAATTGTCTAGAGTTATAAACTCATATT
CTATTATGGATTTGGTTATAATCGTTTGTCTTGAGGATTTTCATGACACAATTCCTCTCAAAGTG
AAAATATACCAACTTATACCTTTAGTGTTTTGAATATT
Found at i:4140979 original size:24 final size:24
Alignment explanation
Indices: 4140952--4141020 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
4140942 CCCATTGACT
*
4140952 GACTCGTTTATAATTTGTTTTATC
1 GACTTGTTTATAATTTGTTTTATC
** ** *
4140976 GACTTGTTTATAAGCTCATTTATT
1 GACTTGTTTATAATTTGTTTTATC
4141000 GACTTGTTTATAAATTTGTTT
1 GACTTGTTTAT-AATTTGTTT
4141021 ACTTAATTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
24 29 0.85
25 5 0.15
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.54
Consensus pattern (24 bp):
GACTTGTTTATAATTTGTTTTATC
Found at i:4141240 original size:23 final size:23
Alignment explanation
Indices: 4141209--4141383 Score: 170
Period size: 23 Copynumber: 7.6 Consensus size: 23
4141199 GACATTAAAT
* *
4141209 AAACGTTAAACGAATATGTTCGC
1 AAACGTTAAACAAATATATTCGC
* *
4141232 GAACGTTAAACAAATATATTTGC
1 AAACGTTAAACAAATATATTCGC
* * *
4141255 AAATGTTAAACGAATATGTTCGC
1 AAACGTTAAACAAATATATTCGC
* *
4141278 GAACGTTAAACAAATATATTTGC
1 AAACGTTAAACAAATATATTCGC
* * **
4141301 AAATGTTAAACAAATATACTCAT
1 AAACGTTAAACAAATATATTCGC
* * **
4141324 AAACCTTAAACAAATATACTCAT
1 AAACGTTAAACAAATATATTCGC
* **
4141347 AAACGTTAAACAAATATACTCAT
1 AAACGTTAAACAAATATATTCGC
4141370 AAACGTTAAACAAA
1 AAACGTTAAACAAA
4141384 CATGTTTACG
Statistics
Matches: 129, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 129 1.00
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.27
Consensus pattern (23 bp):
AAACGTTAAACAAATATATTCGC
Found at i:4141280 original size:46 final size:46
Alignment explanation
Indices: 4141213--4141317 Score: 201
Period size: 46 Copynumber: 2.3 Consensus size: 46
4141203 TTAAATAAAC
4141213 GTTAAACGAATATGTTCGCGAACGTTAAACAAATATATTTGCAAAT
1 GTTAAACGAATATGTTCGCGAACGTTAAACAAATATATTTGCAAAT
4141259 GTTAAACGAATATGTTCGCGAACGTTAAACAAATATATTTGCAAAT
1 GTTAAACGAATATGTTCGCGAACGTTAAACAAATATATTTGCAAAT
*
4141305 GTTAAACAAATAT
1 GTTAAACGAATAT
4141318 ACTCATAAAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 58 1.00
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.30
Consensus pattern (46 bp):
GTTAAACGAATATGTTCGCGAACGTTAAACAAATATATTTGCAAAT
Found at i:4141333 original size:46 final size:46
Alignment explanation
Indices: 4141233--4141383 Score: 194
Period size: 46 Copynumber: 3.3 Consensus size: 46
4141223 TATGTTCGCG
* ** ***
4141233 AACGTTAAACAAATATATTTGCAAATGTTAAACGAATATGTTCGCG
1 AACGTTAAACAAATATATTTGCAAATGTTAAACAAATATACTCATA
4141279 AACGTTAAACAAATATATTTGCAAATGTTAAACAAATATACTCATA
1 AACGTTAAACAAATATATTTGCAAATGTTAAACAAATATACTCATA
* * *** *
4141325 AACCTTAAACAAATATACTCATAAACGTTAAACAAATATACTCATA
1 AACGTTAAACAAATATATTTGCAAATGTTAAACAAATATACTCATA
4141371 AACGTTAAACAAA
1 AACGTTAAACAAA
4141384 CATGTTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (46 bp):
AACGTTAAACAAATATATTTGCAAATGTTAAACAAATATACTCATA
Found at i:4144104 original size:13 final size:13
Alignment explanation
Indices: 4144085--4144213 Score: 62
Period size: 11 Copynumber: 10.2 Consensus size: 13
4144075 AAATTGAAAA
4144085 AATATA-ATATAT
1 AATATATATATAT
4144097 -ATATATA-ATAT
1 AATATATATATAT
*
4144108 AAGTTTATATATAT
1 AA-TATATATATAT
*
4144122 AA-ACTATATTTAT
1 AATA-TATATATAT
* *
4144135 ATTATAAACTATAT
1 AATATATA-TATAT
4144149 AAT-TAT-TATA-
1 AATATATATATAT
*
4144159 AGT-TATATATAT
1 AATATATATATAT
* *
4144171 AAATTATGTTTATAT
1 -AA-TATATATATAT
4144186 GAACTATATATAT-T
1 -AA-TATATATATAT
4144200 AA-ATATATATAT
1 AATATATATATAT
4144212 AA
1 AA
4144214 ACTATACATG
Statistics
Matches: 88, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
10 5 0.06
11 25 0.28
12 5 0.06
13 22 0.25
14 15 0.17
15 16 0.18
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (13 bp):
AATATATATATAT
Found at i:4144129 original size:21 final size:20
Alignment explanation
Indices: 4144087--4144147 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
4144077 ATTGAAAAAA
*
4144087 TATAATATATATATAT-AA-
1 TATAATTTATATATATAAAC
4144105 TATAAGTTTATATATATAAAC
1 TATAA-TTTATATATATAAAC
4144126 TAT-ATTTATAT-TATAAAC
1 TATAATTTATATATATAAAC
4144144 TATA
1 TATA
4144148 TAATTATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 15 0.39
19 17 0.45
20 3 0.08
21 3 0.08
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (20 bp):
TATAATTTATATATATAAAC
Found at i:4144149 original size:20 final size:19
Alignment explanation
Indices: 4144092--4144148 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 19
4144082 AAAAATATAA
4144092 TATATATATATAA-TATAAGTT
1 TATATATATA-AACTAT-A-TT
4144113 TATATATATAAACTATATT
1 TATATATATAAACTATATT
4144132 TATAT-TATAAACTATAT
1 TATATATATAAACTATAT
4144149 AATTATTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.34
19 7 0.20
20 3 0.09
21 13 0.37
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (19 bp):
TATATATATAAACTATATT
Found at i:4144155 original size:18 final size:18
Alignment explanation
Indices: 4144092--4144171 Score: 69
Period size: 18 Copynumber: 4.6 Consensus size: 18
4144082 AAAAATATAA
* *
4144092 TATATATATATAATATAAG
1 TATATATATATTATA-AAC
4144111 T-T-TATATA-TATAAAC
1 TATATATATATTATAAAC
*
4144126 TATATTTATATTATAAAC
1 TATATATATATTATAAAC
**
4144144 TATATA-ATTATTATAAGT
1 TATATATA-TATTATAAAC
4144162 TATATATATA
1 TATATATATA
4144172 AATTATGTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
15 3 0.06
16 4 0.08
17 12 0.24
18 29 0.58
19 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TATATATATATTATAAAC
Found at i:4144175 original size:23 final size:23
Alignment explanation
Indices: 4144091--4144177 Score: 72
Period size: 23 Copynumber: 3.7 Consensus size: 23
4144081 AAAAAATATA
* *
4144091 ATATATATATA-TAATATAAGTTT
1 ATATATATAAATTATTATAAG-TT
4144114 ATATATATAAACTATATT-TATA-TT
1 ATATATATAAA-T-TATTATA-AGTT
*
4144138 ATAAACTATATAATTATTATAAGTT
1 ATATA-TATA-AATTATTATAAGTT
4144163 ATATATATAAATTAT
1 ATATATATAAATTAT
4144178 GTTTATATGA
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
23 16 0.31
24 15 0.29
25 15 0.29
26 6 0.12
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATATATAAATTATTATAAGTT
Found at i:4144242 original size:15 final size:13
Alignment explanation
Indices: 4144162--4144247 Score: 75
Period size: 13 Copynumber: 6.3 Consensus size: 13
4144152 TATTATAAGT
*
4144162 TATATATATAAAT
1 TATATATATAAAC
* *
4144175 TATGTTTATATGAAC
1 TA--TATATATAAAC
4144190 TATATATATTAAA-
1 TATATATA-TAAAC
4144203 TATATATATAAAC
1 TATATATATAAAC
* *
4144216 TATACATGTAAAC
1 TATATATATAAAC
4144229 TATATATGGATAAAC
1 TATATAT--ATAAAC
4144244 TATA
1 TATA
4144248 AAAAGTATAT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
12 4 0.07
13 32 0.55
14 3 0.05
15 19 0.33
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:4144405 original size:19 final size:19
Alignment explanation
Indices: 4144381--4144441 Score: 79
Period size: 19 Copynumber: 3.3 Consensus size: 19
4144371 TTTTATTTGG
4144381 GAATTTAGAGGGAAATTGA
1 GAATTTAGAGGGAAATTGA
**
4144400 GAATTTAGAGGG-AATAAA
1 GAATTTAGAGGGAAATTGA
* *
4144418 AAATTTGGAGGGAAATTGA
1 GAATTTAGAGGGAAATTGA
4144437 GAATT
1 GAATT
4144442 GAGATTTATT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 14 0.41
19 20 0.59
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (19 bp):
GAATTTAGAGGGAAATTGA
Found at i:4144641 original size:4 final size:4
Alignment explanation
Indices: 4144632--4149157 Score: 7184
Period size: 4 Copynumber: 1165.8 Consensus size: 4
4144622 TATATATGTA
4144632 TATG TATG TATG TATG TAT- TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4144679 TATG TATG TATG TATG T-TG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4144726 T-TG TATG TATG TATG TATG TATG TATG TATG TATG TAGG T-TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4144772 TAT- TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4144819 TATG TA-- TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4144865 --TG TATG TATG TATG TATG TATG TATG TATG TATG TCTG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4144911 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4144958 TATG TATG -ATG T-TG TATG TATG TATG TATG TA-G -ATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145002 TATG TATG TATG TATG TATG TATGG T-TG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG TATG
*
4145050 TATG TA-G GATG TATG TATG TATG TATG TATG TATG TATG TATG TATGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G
* *
4145098 TATG TATG GATG TATG TATG --TG TATG TATG TA-G TATG TATG GATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145143 TATG TATG TA-- TATG TATG TATG TATG TATTG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TA-TG TATG TATG TATG TATG
4145188 TATG TATG TATG TATG TATG TATG TATG --TG TATG T-TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145233 TATG TATG TATGG TATG TATG TATG TATG TATG TATG TATG TATGG TATG
1 TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TAT-G TATG
*
4145283 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG GATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4145331 TATG TATG TATG TATG TATG TATG TATG TATG TAGG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4145379 TA-- TATG TATG TATG TAT- T-TG TAGG TATG TATG TATG -ATG TAT-
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145421 TATG TATG TATG -ATG TATG TATG TAT- TATG TA-- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4145465 TATG TATG TATG TATG TATG TATG TATG TATG -AGG TATG TCTG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145512 TATG TATG TATG TATG TATG -ATG TATG TATG TATG TATG TATG T-TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145558 T-TG TATG T-TG TATG TATG TATG TATG TATG TATGG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG
*
4145604 TATG TATG TATG TATG TATG GATG TATG TATG TATG TA-G TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145651 TATG T-T- TATG TATG TATGG TATG TATG TATG TATG TATG TATG -ATG
1 TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG
4145697 TA-- TATG TATG -ATG T-TG TATG TATG TATG TATG TA-G TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145740 TATG TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4145787 -ATG TCTG TATG TATG TATG TATG TAT- T-TG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4145832 TATG TATG TATG TATGG TATG TATG TATG TATG TATG TATG TATG TA-G
1 TATG TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TATG
4145880 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4145928 TAGG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG T-TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4145974 GATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146022 TTATTG TATG TATG TATTG TATG TATG TAT- TATG TATG TATG TATG TATG
1 -TA-TG TATG TATG TA-TG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4146072 TA-G TATG T-TG TATG TTTG TATG -ATG TATG TATG TAGG TATG --TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146115 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146163 TATG TAGG TATG TATG TATG TA-G T-TG TATG TATG --TG TAT- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146206 TATG TATG TATG TATG TATG TATG TATG TATG TA-- TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146252 TA-G TAT- TCATG TATG TATG TATG TATG TAATG TATG TATG TATG TATG
1 TATG TATG T-ATG TATG TATG TATG TATG T-ATG TATG TATG TATG TATG
*
4146300 TATG T-TG TATG TATG TATG TATG TATG GATG TTATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG -TATG TATG TATG TATG
4146348 TA-G TATG TATG TATG TATG TATG TATG TAT- TATG TATG TATG TAATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T-ATG
4146395 TATG TATG TA-G T-TG TATG TATG TATG TATG TATG TA-G TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146440 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT- TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146487 TATG TATG TATG TATG T-TG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
4146534 TA-G TATG T-CG TATG TATG TATG TATG TATG TATG TATGG TGTC TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG
4146581 TATG TATG TATG TATG TATG TATG TATG TATG --TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146627 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146675 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146723 --TG TAT- TATG TATG TATG TATG TATG TATG TATG TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4146768 TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146815 TATG TATGG TATG TATG TATG TATG TATG TATG TAGG TATG TATG TATG
1 TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146864 TATG TATG TATG TATG TCTG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146911 TATG TATG TAT- TATG TATG TATG TATG TATG T-CG TATG TAT- TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4146956 TATG TATG T-TG TATG TATG TCTG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147003 TATG TA-G TATG TATG TA-- TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4147048 TATG TATG TATG TATG GATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4147096 TATG TATG TGT- TATG TATG TATG TATG TAGG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4147143 TATG TATG TATG TATT TATG TATG TATT TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4147191 TATG TATG TATG TATG TA-G TCTG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4147238 T-TG TATG TATG TATG TATG TCTG TA-G TATG TA-G TCTG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147283 TATG TATAG TATG TATG TATG TATG --TG TATG TATG TATG TATG T-TG
1 TATG TAT-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4147329 TATG TATG TATG TAT- TATG TATG GATG TATG TATG TAGG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147376 TATG TATG TATG TATG TATG T-TG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4147423 TATG TATG TATG TATG TAGG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147471 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATTG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-TG TATG
4147520 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA--
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147566 TATG TATG TATG TATG TATG T-T- TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4147612 TCTG TATG TATG TATG TA-G TTATG TAGG TATG TATG TAT- TATG TATG
1 TATG TATG TATG TATG TATG -TATG TATG TATG TATG TATG TATG TATG
4147659 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TA--
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147704 TATG TATG TA-- TATG TATG TATG TATG TATG T-TG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147749 TATG T-TG TATG TATG TATG TATG TATG TAT- TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147795 TATG TATG TATG TATG TATG TATG TAT- TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147842 TATG TATG TATG TATG TATG TA-- TATG TATG TATG TAT- TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4147887 TATG T-CG TATG TATG T-TG TATG TATG TATG -AT- TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4147931 TAATG GATG --TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 T-ATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4147978 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148026 TATG TATG TATG TATG -ATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148073 TATG TATG TATG TATG TATG TATG TATG TA-G TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148120 TATG TAT- TATG TATG TAT- TATG T-TG TA-G TATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148163 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4148211 TATG TATG TATG TATG TATG TATG TCTG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4148259 TAT- TCTG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4148305 TATG TATG TA-G TATG TATG TATG TATGG TATG TATG TATG TATG TAGG
1 TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG
4148353 TATG TATG --TG TATG TATG TATG TATG T-TG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148398 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T-TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4148445 TATG TATG TCT- T-TG TATG TATG TATG TATG TATG GATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148491 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA--
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148537 TATG TATG TATG TATG TATGG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG TATG TATG
4148586 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATTG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA-TG
*
4148635 TATG TA-G TATG TATG TATG TATG TCTG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148682 TATG TATG TATG TATG TAT- TATG TATG TATG TATG TATG TATG T-TG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148728 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4148776 TATG TATG TATG TAATG TATG TATG TATG TATG TATG TATG TA-G TATG
1 TATG TATG TATG T-ATG TATG TATG TATG TATG TATG TATG TATG TATG
4148824 TATG TATG TATG TATG TATG TATG TATG TATG TATG --TG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
4148870 --TG TATG TATG TATG TATG TATG TATG TAGG TATG TATG TATG GATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4148916 TATG TATG TATG TTATG TATG TAGG TATG T-TG TATG TATG TATG T-TG
1 TATG TATG TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4148963 TATG TCTG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4149010 TATG --TG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
4149055 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4149103 TATG TAGG TATG TATG TAT- TATG TATG TATG TATGG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG
4149151 TATG TAT
1 TATG TAT
4149158 ATAATTATAT
Statistics
Matches: 4229, Mismatches: 103, Indels: 380
0.90 0.02 0.08
Matches are distributed among these distances:
2 58 0.01
3 290 0.07
4 3786 0.90
5 93 0.02
6 2 0.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:4149189 original size:2 final size:2
Alignment explanation
Indices: 4149155--4149458 Score: 140
Period size: 2 Copynumber: 161.0 Consensus size: 2
4149145 TGTATGTATG
4149155 TA TA TA -A T- TA TA T- TA TA -A T- TA TA T- TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
4149190 TA TA -A TA TA TA TA TA GA TA TA TA T- TA TA -A CTA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
4149229 TA TA TA TA TA TA TC TA TA TA TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
4149270 T- TA TA -A CA CA CTA TG CA TA AA CTA TA TA AA GTA -A TA AA CTA
1 TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA -TA TA TA TA -TA
* * * * * * * *
4149311 TA TA GA CA CA CTA TG CA TA -A AA TA TA TA GTT TA TA AA T- TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
4149353 -A TT TA TA T- TA -A TA TA -A TA TA TA TA TA TA TG TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
4149391 -A CTA -A TA TA -A GTA -A TC TA TA AA T- TA TA TA TA TA TA TA TA
1 TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4149430 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4149459 GACACACTAT
Statistics
Matches: 229, Mismatches: 37, Indels: 72
0.68 0.11 0.21
Matches are distributed among these distances:
1 27 0.12
2 193 0.84
3 9 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (2 bp):
TA
Found at i:4149218 original size:57 final size:57
Alignment explanation
Indices: 4149163--4149458 Score: 106
Period size: 57 Copynumber: 5.2 Consensus size: 57
4149153 TGTATATAAT
* * * *
4149163 TATATTATAATTATATTAT-TATATATATATA-ATATATATATAGATA-TATAT-TA
1 TATATTATAACTATAATATATATATATATATATCTATATATATATATATTATATATA
*
4149216 TA-ACTAT-A--AT-ATATATATATATAT--ATCTATATATATATATATTATATATA
1 TATATTATAACTATAATATATATATATATATATCTATATATATATATATTATATATA
* * * * * * * *
4149266 TATATTATAACACACTATGCATAAACTATATAAAGTAATAAACTATATAGACACACTATGCATAA
1 TATATTAT---A-ACTAT-AATATA-TATATATA-T-AT-ATCTATATATATATA-TAT-TAT-A
*
4149331 AATA
54 TATA
* * * *
4149335 TATAGTTTATAAATTATAATTTATAT-TA-ATATAATATATATATATATGTATGTATA-ACTA
1 TATA--TTAT-AACTATAATATATATATATATAT-ATCTATATATATATATAT-TATATA-TA
* *
4149395 -ATATAAGTAATCTATAA-AT-TATATATATATATATATATATATATATA-TATATATA
1 TATATTA-TAA-CTATAATATATATATATATATATCTATATATATATATATTATATATA
4149450 TATATTATA
1 TATATTATA
4149459 GACACACTAT
Statistics
Matches: 181, Mismatches: 30, Indels: 62
0.66 0.11 0.23
Matches are distributed among these distances:
47 1 0.01
48 16 0.09
49 16 0.09
50 4 0.02
51 5 0.03
52 4 0.02
53 2 0.01
55 8 0.04
56 10 0.06
57 23 0.13
58 12 0.07
59 4 0.02
60 7 0.04
61 13 0.07
62 13 0.07
63 1 0.01
64 1 0.01
65 2 0.01
66 14 0.08
67 6 0.03
68 6 0.03
69 9 0.05
71 4 0.02
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (57 bp):
TATATTATAACTATAATATATATATATATATATCTATATATATATATATTATATATA
Found at i:4149473 original size:185 final size:181
Alignment explanation
Indices: 4149166--4149496 Score: 510
Period size: 185 Copynumber: 1.8 Consensus size: 181
4149156 ATATAATTAT
*
4149166 ATTATAATTATATTATTATATATATATAATATATATATAGATATATATTATAACTATAATATATA
1 ATTATAATTATATTATTATATATATATAATATATATATAGATATATATAATAACTATAATATATA
*
4149231 TATATATATATCTATATATATATATATTATATATATATATTATAACACACTATGCATAAACTATA
66 TATATATATATATATATATATATATATTATATATATATATTATAACACACTATGCATAAACTATA
4149296 TAAAGTAATAAACTATATAGACACACTATGCATAAAATATATAGTTTATAA
131 TAAAGTAATAAACTATATAGACACACTATGCATAAAATATATAGTTTATAA
* *
4149347 ATTATAATTTATATTAATATA-ATATAT-ATATATATGTATGTATAACTAATATAAGTAATCTAT
1 ATTATAA-TTATATTATTATATATATATAATATATATATA-G-AT-A-T-ATATAA-TAA-CTAT
4149410 AA-AT-TATATATATATATATATATATATATATA-TATATATATATATTATAGACACACTATGCA
58 AATATATATATATATATATATATATATATATATATTATATATATATATTATA-ACACACTATGCA
4149472 TAAACTATATAAAGTAATAAACTAT
122 TAAACTATATAAAGTAATAAACTAT
4149497 GTATGTATGT
Statistics
Matches: 137, Mismatches: 4, Indels: 14
0.88 0.03 0.09
Matches are distributed among these distances:
180 10 0.07
181 14 0.10
182 14 0.10
183 1 0.01
184 18 0.13
185 69 0.50
186 5 0.04
187 6 0.04
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.42
Consensus pattern (181 bp):
ATTATAATTATATTATTATATATATATAATATATATATAGATATATATAATAACTATAATATATA
TATATATATATATATATATATATATATTATATATATATATTATAACACACTATGCATAAACTATA
TAAAGTAATAAACTATATAGACACACTATGCATAAAATATATAGTTTATAA
Found at i:4149503 original size:4 final size:4
Alignment explanation
Indices: 4149494--4149685 Score: 260
Period size: 4 Copynumber: 47.8 Consensus size: 4
4149484 AGTAATAAAC
4149494 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
4149542 TATG TATG TATG TATG TATG TATG TATG TATG TATG GATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* ** * *
4149590 TATG TATG TATG TATG TATG TATG TATG TATA TAAAC TATA TATG TATA
1 TATG TATG TATG TATG TATG TATG TATG TATG T-ATG TATG TATG TATG
* * * * *
4149639 AACTA TAT- TATA CATA TATG TATG TATG TATG TATG TATG TATG TAT
1 TA-TG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
4149686 ATAAACTATA
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
3 3 0.02
4 163 0.95
5 5 0.03
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:4149701 original size:13 final size:14
Alignment explanation
Indices: 4149683--4149711 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4149673 TGTATGTATG
4149683 TATAT-AAACTATA
1 TATATAAAACTATA
4149696 TATATAAAACTATA
1 TATATAAAACTATA
4149710 TA
1 TA
4149712 AAATATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
TATATAAAACTATA
Found at i:4149724 original size:23 final size:23
Alignment explanation
Indices: 4149683--4149726 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
4149673 TGTATGTATG
*
4149683 TATATAAACTATATATATAAAAC
1 TATATAAAATATATATATAAAAC
* *
4149706 TATATAAAATATGTTTATAAA
1 TATATAAAATATATATATAAA
4149727 TTATAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (23 bp):
TATATAAAATATATATATAAAAC
Found at i:4149748 original size:2 final size:2
Alignment explanation
Indices: 4149741--4149823 Score: 65
Period size: 2 Copynumber: 44.5 Consensus size: 2
4149731 AATTTAATTA
*
4149741 AT AT AT AT AT AT AT -T AT AT AT GT AT A- ACT A- AT AT A- AGT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A-T AT
* *
4149780 AT CT AT AA AT -T AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4149820 -T AT A
1 AT AT A
4149824 GAACACCTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
1 8 0.12
2 55 0.85
3 2 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:4150207 original size:23 final size:22
Alignment explanation
Indices: 4150158--4150231 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 22
4150148 ATAATTTATT
*
4150158 AATATAATATATATATATGTAT-
1 AATATAA-AAATATATATGTATA
*
4150180 -GTATAAAAACTATATATGTATA
1 AATATAAAAA-TATATATGTATA
*
4150202 ACTATATAAAATATATA-GTTATA
1 AATATA-AAAATATATATG-TATA
4150225 AATATAA
1 AATATAA
4150232 TTTATTAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.05
21 16 0.37
22 2 0.05
23 19 0.44
24 4 0.09
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (22 bp):
AATATAAAAATATATATGTATA
Found at i:4150412 original size:33 final size:32
Alignment explanation
Indices: 4150361--4150452 Score: 80
Period size: 33 Copynumber: 2.8 Consensus size: 32
4150351 TAAACCCTAA
* *
4150361 AGTATATGTATATGTAAAC-TATATGTAATTTAT
1 AGTACATGTATATATAAACTTATA-GT-ATTTAT
* *
4150394 AGTACATGTATGTATAAACTTATAGTATTTGT
1 AGTACATGTATATATAAACTTATAGTATTTAT
4150426 A-TACATGTAACTATATAGTAACTTATA
1 AGTACATGT-A-TATATA--AACTTATA
4150453 CATGTTATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
31 7 0.14
32 7 0.14
33 23 0.47
34 4 0.08
35 8 0.16
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (32 bp):
AGTACATGTATATATAAACTTATAGTATTTAT
Found at i:4150501 original size:21 final size:23
Alignment explanation
Indices: 4150477--4150527 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
4150467 TAGTGTACTA
* *
4150477 TATATTTTTTATAACA-TATAG-
1 TATATTATTTATAAAACTATAGT
*
4150498 TATATAATTTATAAAACTATAGT
1 TATATTATTTATAAAACTATAGT
4150521 TATATTA
1 TATATTA
4150528 ATGTGCTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 13 0.54
22 5 0.21
23 6 0.25
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
TATATTATTTATAAAACTATAGT
Found at i:4150501 original size:23 final size:22
Alignment explanation
Indices: 4150475--4150526 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
4150465 ATTAGTGTAC
* *
4150475 TATATATTTTTTATAACATATAG
1 TATATATTTTATAAAAC-TATAG
*
4150498 TATATAATTTATAAAACTATAG
1 TATATATTTTATAAAACTATAG
4150520 T-TATATT
1 TATATATT
4150527 AATGTGCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 5 0.20
22 6 0.24
23 14 0.56
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (22 bp):
TATATATTTTATAAAACTATAG
Found at i:4150604 original size:14 final size:14
Alignment explanation
Indices: 4150587--4150645 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
4150577 TAATATAGTA
4150587 TATAGTTTATAAAC
1 TATAGTTTATAAAC
* * *
4150601 TATACTATATTAA-
1 TATAGTTTATAAAC
* *
4150614 T-TAATTATATTAAC
1 TATAGTT-TATAAAC
4150628 TATAGTTTATAAAC
1 TATAGTTTATAAAC
4150642 TATA
1 TATA
4150646 CTATATAATT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
12 3 0.09
13 7 0.20
14 21 0.60
15 4 0.11
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (14 bp):
TATAGTTTATAAAC
Found at i:4150627 original size:62 final size:64
Alignment explanation
Indices: 4150543--4150705 Score: 174
Period size: 62 Copynumber: 2.5 Consensus size: 64
4150533 CTATATAGTT
* * * *
4150543 TATATTAAGTTAATTATCTTAACTATAATTTATTTAA-TATAGTATATAGTTTATAA-ACTATA-
1 TATATTAA-TTAATTATATTAACTATAATTTATTAAACTATACTATATAATTTATAACA-TATAG
4150605 C
64 C
* *
4150606 TATATTAATTAATTATATTAACTATAGTTTA-TAAACTATACTATATAATTTATAACATATAGTT
1 TATATTAATTAATTATATTAACTATAATTTATTAAACTATACTATATAATTTATAACATATAG-C
* *
4150670 TATATTAATATAATTTTA-TATACTATATTTTATTAA
1 TATATTAAT-TAATTATATTA-ACTATAATTTATTAA
4150706 TTTTAATTAC
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
61 3 0.04
62 42 0.49
63 9 0.11
64 11 0.13
65 17 0.20
66 3 0.04
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (64 bp):
TATATTAATTAATTATATTAACTATAATTTATTAAACTATACTATATAATTTATAACATATAGC
Found at i:4150701 original size:14 final size:14
Alignment explanation
Indices: 4150642--4150702 Score: 52
Period size: 16 Copynumber: 4.1 Consensus size: 14
4150632 GTTTATAAAC
4150642 TATACTATATAATTTA
1 TATACTATAT--TTTA
*
4150658 TA-ACATATAGTTTA
1 TATAC-TATATTTTA
*
4150672 TATTAATATAATTTTA
1 TA-TACTAT-ATTTTA
4150688 TATACTATATTTTA
1 TATACTATATTTTA
4150702 T
1 T
4150703 TAATTTTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
14 13 0.35
15 10 0.27
16 14 0.38
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (14 bp):
TATACTATATTTTA
Found at i:4150875 original size:2 final size:2
Alignment explanation
Indices: 4150863--4150941 Score: 59
Period size: 2 Copynumber: 37.0 Consensus size: 2
4150853 ATAAACTATG
* * *
4150863 TA TA GTA TA TA TA AA CTA TG TA TA GTA TA TA TA AA CTA TA TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA -TA TA TA TA
** *
4150907 TA TA TA GCC TA TA TA TA TA TA TG TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4150942 ACCATATAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 54 0.90
3 6 0.10
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (2 bp):
TA
Found at i:4150877 original size:20 final size:20
Alignment explanation
Indices: 4150852--4150912 Score: 106
Period size: 20 Copynumber: 3.1 Consensus size: 20
4150842 AGTACATATG
4150852 TATAAACTATGTATAGTATA
1 TATAAACTATGTATAGTATA
4150872 TATAAACTATGTATAGTATA
1 TATAAACTATGTATAGTATA
*
4150892 TATAAACTATATATA-TATA
1 TATAAACTATGTATAGTATA
4150911 TA
1 TA
4150913 GCCTATATAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
19 6 0.15
20 34 0.85
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.41
Consensus pattern (20 bp):
TATAAACTATGTATAGTATA
Found at i:4150948 original size:20 final size:21
Alignment explanation
Indices: 4150852--4150948 Score: 85
Period size: 20 Copynumber: 4.5 Consensus size: 21
4150842 AGTACATATG
4150852 TATAAAC-TATGTATAGTATA
1 TATAAACATATGTATAGTATA
4150872 TATAAAC-TATGTATAGTATA
1 TATAAACATATGTATAGTATA
*
4150892 TATAAACTATATATATA-TATA
1 TATAAAC-ATATGTATAGTATA
*
4150913 GCCTATATATATATATGTATA-TATA
1 ---TATA-A-ACATATGTATAGTATA
*
4150938 TATAACCATAT
1 TATAAACATAT
4150949 AAAGTAAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
20 31 0.48
21 5 0.08
22 11 0.17
24 4 0.06
25 13 0.20
26 1 0.02
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.41
Consensus pattern (21 bp):
TATAAACATATGTATAGTATA
Found at i:4151197 original size:39 final size:40
Alignment explanation
Indices: 4151121--4151221 Score: 107
Period size: 39 Copynumber: 2.5 Consensus size: 40
4151111 GTTAATTATC
* * * *
4151121 TTAACTATAATTTATATTATATATCGTTTTTAAACTATATTA
1 TTAACTATAA-TTATATAAT-TATAGTTTATAAACTATACTA
4151163 TTAA-TATAATTATATAATTATAGTTTATAAACTATACTA
1 TTAACTATAATTATATAATTATAGTTTATAAACTATACTA
* *
4151202 TATAATTATAA-CATATAATT
1 T-TAACTATAATTATATAATT
4151222 TATATTAATA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
39 19 0.37
40 19 0.37
41 10 0.19
42 4 0.08
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.49
Consensus pattern (40 bp):
TTAACTATAATTATATAATTATAGTTTATAAACTATACTA
Found at i:4152006 original size:18 final size:17
Alignment explanation
Indices: 4151965--4152021 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
4151955 TATGAATTGT
* **
4151965 AATTAACATAAAAACCA
1 AATTAATATAAAAATTA
*
4151982 AATTTAATATACAAATTA
1 AA-TTAATATAAAAATTA
4152000 TAATTAATATAAAAATTA
1 -AATTAATATAAAAATTA
4152018 AATT
1 AATT
4152022 TCAAAAGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 6 0.18
18 25 0.76
19 2 0.06
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTAATATAAAAATTA
Found at i:4152177 original size:16 final size:16
Alignment explanation
Indices: 4152158--4152196 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4152148 TGAGTCAATT
*
4152158 ACAGGTCAAGTTCATA
1 ACAGGTCAAGTTCAAA
* *
4152174 ACAGGTCAGGTTGAAA
1 ACAGGTCAAGTTCAAA
4152190 ACAGGTC
1 ACAGGTC
4152197 GGGTAATACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (16 bp):
ACAGGTCAAGTTCAAA
Found at i:4153071 original size:147 final size:147
Alignment explanation
Indices: 4152804--4153097 Score: 588
Period size: 147 Copynumber: 2.0 Consensus size: 147
4152794 TTGACTTAAA
4152804 CAATATATAATATCGATACCAAACTAAGGGTATTGATACACTGTAGTATCAACATTCTTGGTCAA
1 CAATATATAATATCGATACCAAACTAAGGGTATTGATACACTGTAGTATCAACATTCTTGGTCAA
4152869 TATTAATAATAAAAATTGTTTCAAAGTCCCTTGGCATCAAAGTCCCATCTGGCTTTGACTGGCTG
66 TATTAATAATAAAAATTGTTTCAAAGTCCCTTGGCATCAAAGTCCCATCTGGCTTTGACTGGCTG
4152934 AAGACGGTGTATGATTT
131 AAGACGGTGTATGATTT
4152951 CAATATATAATATCGATACCAAACTAAGGGTATTGATACACTGTAGTATCAACATTCTTGGTCAA
1 CAATATATAATATCGATACCAAACTAAGGGTATTGATACACTGTAGTATCAACATTCTTGGTCAA
4153016 TATTAATAATAAAAATTGTTTCAAAGTCCCTTGGCATCAAAGTCCCATCTGGCTTTGACTGGCTG
66 TATTAATAATAAAAATTGTTTCAAAGTCCCTTGGCATCAAAGTCCCATCTGGCTTTGACTGGCTG
4153081 AAGACGGTGTATGATTT
131 AAGACGGTGTATGATTT
4153098 TGATGATTTT
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
147 147 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (147 bp):
CAATATATAATATCGATACCAAACTAAGGGTATTGATACACTGTAGTATCAACATTCTTGGTCAA
TATTAATAATAAAAATTGTTTCAAAGTCCCTTGGCATCAAAGTCCCATCTGGCTTTGACTGGCTG
AAGACGGTGTATGATTT
Found at i:4156192 original size:16 final size:16
Alignment explanation
Indices: 4156173--4156212 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
4156163 CTGATCTAGA
* *
4156173 AAATATCCAAAATTTT
1 AAATATCAAAAAATTT
4156189 AAATATTCAAAAAATTT
1 AAATA-TCAAAAAATTT
4156206 AAATATC
1 AAATATC
4156213 TAAGTTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (16 bp):
AAATATCAAAAAATTT
Found at i:4156209 original size:68 final size:68
Alignment explanation
Indices: 4156130--4156260 Score: 208
Period size: 68 Copynumber: 1.9 Consensus size: 68
4156120 GACCCGATCC
* * * * *
4156130 AAAATTTTAAATATCTAAGATATTTATCTATATCTGATCTAGAAAATATCCAAAATTTTAAATAT
1 AAAAATTTAAATATCTAAGATACTAATCTATATCTGATCTAAAAAATATCCAAAATTTCAAATAT
4156195 TCA
66 TCA
*
4156198 AAAAATTTAAATATCTAAGTTACTAATCTATATCTGATCTAAAAAATATCCAAAATTTCAAAT
1 AAAAATTTAAATATCTAAGATACTAATCTATATCTGATCTAAAAAATATCCAAAATTTCAAAT
4156261 CAAATATCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.37
Consensus pattern (68 bp):
AAAAATTTAAATATCTAAGATACTAATCTATATCTGATCTAAAAAATATCCAAAATTTCAAATAT
TCA
Found at i:4156267 original size:21 final size:22
Alignment explanation
Indices: 4156241--4156296 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
4156231 CTGATCTAAA
4156241 AAATATCCAAAATTTCAAAT-C
1 AAATATCCAAAATTTCAAATCC
4156262 AAATATCC-AAATATTCAAATCC
1 AAATATCCAAAAT-TTCAAATCC
4156284 AAATAT--AAAATTT
1 AAATATCCAAAATTT
4156297 AATTCAACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 6 0.19
21 19 0.59
22 7 0.22
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (22 bp):
AAATATCCAAAATTTCAAATCC
Found at i:4157441 original size:23 final size:24
Alignment explanation
Indices: 4157410--4157459 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4157400 TCAAATGAAG
*
4157410 TAATAAACATAAA-AACCAGATTT
1 TAATAAACAAAAATAACCAGATTT
* *
4157433 TAATTAACAAAAATAACTAGATTT
1 TAATAAACAAAAATAACCAGATTT
4157457 TAA
1 TAA
4157460 AGCACGATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.30
Consensus pattern (24 bp):
TAATAAACAAAAATAACCAGATTT
Done.