Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009624.1 Hibiscus syriacus cultivar Beakdansim tig00117016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8249038
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 25 of 38
Found at i:4777919 original size:14 final size:14
Alignment explanation
Indices: 4777900--4777927 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
4777890 GGAATTAGAG
4777900 AAAGAAAAAGAAAA
1 AAAGAAAAAGAAAA
4777914 AAAGAAAAAGAAAA
1 AAAGAAAAAGAAAA
4777928 TATGGACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAGAAAA
Found at i:4785988 original size:8 final size:8
Alignment explanation
Indices: 4785975--4786011 Score: 65
Period size: 8 Copynumber: 4.5 Consensus size: 8
4785965 GCTTGAAGAA
4785975 AAAAAATG
1 AAAAAATG
4785983 AAAAAATG
1 AAAAAATG
4785991 AAAAAAATG
1 -AAAAAATG
4786000 AAAAAATG
1 AAAAAATG
4786008 AAAA
1 AAAA
4786012 GAGAAAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:4785996 original size:17 final size:17
Alignment explanation
Indices: 4785974--4786011 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
4785964 TGCTTGAAGA
4785974 AAAAAAATGAAAAAATG
1 AAAAAAATGAAAAAATG
4785991 AAAAAAATGAAAAAATG
1 AAAAAAATGAAAAAATG
4786008 AAAA
1 AAAA
4786012 GAGAAAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAAAAATGAAAAAATG
Found at i:4787313 original size:240 final size:240
Alignment explanation
Indices: 4786886--4787444 Score: 910
Period size: 240 Copynumber: 2.3 Consensus size: 240
4786876 AGGAGGTGAA
* * *
4786886 CAACATTTCTAATGGAGAGTTCATAATGAGAAGAACTCATCTGATA-GAGGGAGAAGAAGTTTAT
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATC-CA-ACGAGGGAGAAGAAGTTCAT
*
4786950 AATAAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
64 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTT
* * *
4787015 GAGGGATTGACATTTTCAAAAGAGTTCATAATAAGAAGAACTCATCCTAAATGAGAAAGTTCATA
129 GAGGGATTGACAATTTCAAAAGAGTTCATAATAAGAAAAACTCATCCTAAAGGAGAAAGTTCATA
* * *
4787080 ATGAGAAGAACTTGTTCCTTTCAAGTTCATCACAGAAAGAGATGGAT
194 ATAAGAAGAACTTGTTCCTTTCAAGTCCATCACAGAAAGAGATAGAT
*
4787127 CAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
*
4787192 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTTGAATCAGTGACACCTCGCTTGA
66 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTTGA
* * *
4787257 GGGATTGACAATTTCAAAAGAGTTCATAATGAGAAAAACTCGTCCTAAAGGAGAAAGTTCATGAT
131 GGGATTGACAATTTCAAAAGAGTTCATAATAAGAAAAACTCATCCTAAAGGAGAAAGTTCATAAT
*
4787322 AAGAAGAACTTGTTCCTTTCAAGTCCATCACATAAAGAGATAGAT
196 AAGAAGAACTTGTTCCTTTCAAGTCCATCACAGAAAGAGATAGAT
*
4787367 CAACATTTCCAATGGAGAGTTCATAATGAGAATAACTCATCCAACGA--G-GAAGAAGTTCATAA
1 CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
*
4787429 TGAGAAGAACTTGTTC
66 TGAGAAGAGCTTGTTC
4787445 AACTTCGCAT
Statistics
Matches: 298, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
237 29 0.10
238 1 0.00
239 1 0.00
240 228 0.77
241 39 0.13
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (240 bp):
CAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAA
TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTCGAATCAGTGACACCTCGCTTGA
GGGATTGACAATTTCAAAAGAGTTCATAATAAGAAAAACTCATCCTAAAGGAGAAAGTTCATAAT
AAGAAGAACTTGTTCCTTTCAAGTCCATCACAGAAAGAGATAGAT
Found at i:4787735 original size:329 final size:329
Alignment explanation
Indices: 4787125--4787777 Score: 1010
Period size: 329 Copynumber: 2.0 Consensus size: 329
4787115 AAAGAGATGG
* * *
4787125 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAAAGAGAGAGAAGAAGTTCAT
* *
4787190 AATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGCATTTTGAATCAGTGACACCTCGCTT
66 AATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTCGCTT
* *
4787255 GAGGGATTGACAATTTCAAAAGAGTTCATAATGAGAAAAACTCGTCCTAAAGGAGAAAGTTCATG
131 GAGGGATTAACAATTTCAAAAGAGTTCATAATGAGAAAAACTCGTCCTAAAGGAGAAAGTTCATA
* * * *
4787320 ATAAGAAGAACTTGTTCCTTTCAAGTCCATCACATAAAGAGATAGATCAACATTTCCAATGGAGA
196 ATAAAAAGAACTTGTTCCTTTCAAGTCCACCACAGAAAGAGATAGATCAACATTTCCAATGAAGA
* *
4787385 GTTCATAATGAGAATAACTCATCCA-ACGAG-GAAGAAGTTCATAATGAGAAGAACTTGTTCAAC
261 GTTCATAAAGAGAAAAACTCATCCAGA-GAGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAC
4787448 TTCGC
325 TTCGC
* *
4787453 ATCAACATTTTCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAAAGAGAGAGAATAAGTTCA
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCC-AAAGAGAGAGAAGAAGTTCA
* *
4787518 TAATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATTAGTGACACCTTG-T
65 TAATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTCGCT
* *
4787582 TAGAGGGATTAAC-ATTTCCAAAAGAGTTCATAATGAGAAGAACTCGTCTTAAAGGAGAAAGTTC
130 T-GAGGGATTAACAATTT-CAAAAGAGTTCATAATGAGAAAAACTCGTCCTAAAGGAGAAAGTTC
* * * *
4787646 ATAATAAAAAGAACTTGTTCCTTTCAAGTCCACCACAGAAATAGGT-GACTCAACATTTTCAGTG
193 ATAATAAAAAGAACTTGTTCCTTTCAAGTCCACCACAGAAAGAGATAGA-TCAACATTTCCAATG
4787710 AAGAGTTCATAAAGAGAAAAACTCATCCATGAGAGAGAAGAAGTTCATAATGAGAAGAACTTGTT
257 AAGAGTTCATAAAGAGAAAAACTCATCCA-GAGAGAGAAGAAGTTCATAATGAGAAGAACTTGTT
4787775 CAA
321 CAA
4787778 TCCAACGACG
Statistics
Matches: 295, Mismatches: 23, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
328 50 0.17
329 209 0.71
330 3 0.01
331 33 0.11
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (329 bp):
ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCAAAGAGAGAGAAGAAGTTCAT
AATGAGAAGACCTTGTTCGACCTATCACTCGATTCACGACATTTTGAATCAGTGACACCTCGCTT
GAGGGATTAACAATTTCAAAAGAGTTCATAATGAGAAAAACTCGTCCTAAAGGAGAAAGTTCATA
ATAAAAAGAACTTGTTCCTTTCAAGTCCACCACAGAAAGAGATAGATCAACATTTCCAATGAAGA
GTTCATAAAGAGAAAAACTCATCCAGAGAGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACT
TCGC
Found at i:4787919 original size:3 final size:3
Alignment explanation
Indices: 4787904--4787999 Score: 169
Period size: 3 Copynumber: 32.7 Consensus size: 3
4787894 GGTTAAAGAA
*
4787904 TAT TAT TA- AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4787951 TAT TAT TAT TAT TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4787998 TA
1 TA
4788000 AGTGTGTTTA
Statistics
Matches: 89, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
2 3 0.03
3 86 0.97
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4791199 original size:19 final size:19
Alignment explanation
Indices: 4791171--4791209 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
4791161 TTCTCAAATT
* *
4791171 ATATTCTTCAGTTTATTTA
1 ATATTATTCAATTTATTTA
4791190 ATATTATTCAATTTATTTA
1 ATATTATTCAATTTATTTA
4791209 A
1 A
4791210 AATTCTTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (19 bp):
ATATTATTCAATTTATTTA
Found at i:4791940 original size:24 final size:24
Alignment explanation
Indices: 4791913--4791981 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
4791903 GAGCATGTTG
4791913 ATGTTGATAATGTTGATATTAATA
1 ATGTTGATAATGTTGATATTAATA
* * * *
4791937 ATGTTAATAATGTTAATTTTGATA
1 ATGTTGATAATGTTGATATTAATA
* * *
4791961 ATATTGATATTGATGATATTA
1 ATGTTGATAATGTTGATATTA
4791982 GGTATCATAA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (24 bp):
ATGTTGATAATGTTGATATTAATA
Found at i:4791953 original size:15 final size:15
Alignment explanation
Indices: 4791907--4791941 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
4791897 AATGCTGAGC
* *
4791907 ATGTTGATGTTGATA
1 ATGTTGATATTAATA
4791922 ATGTTGATATTAATA
1 ATGTTGATATTAATA
4791937 ATGTT
1 ATGTT
4791942 AATAATGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (15 bp):
ATGTTGATATTAATA
Found at i:4793583 original size:17 final size:17
Alignment explanation
Indices: 4793563--4793685 Score: 88
Period size: 17 Copynumber: 7.1 Consensus size: 17
4793553 TTTAACTAAG
4793563 TAGTTCATTGATTAAAC
1 TAGTTCATTGATTAAAC
* *
4793580 TAGTTCATTCATCAAAC
1 TAGTTCATTGATTAAAC
*
4793597 TAGTTCATTCAAGATTAGA-
1 TAGTTCATT---GATTAAAC
* *
4793616 -AGTTCATTGAATAAAGT
1 TAGTTCATTGATTAAA-C
* * * *
4793633 TAATTCATTAACTAAAT
1 TAGTTCATTGATTAAAC
* *
4793650 TAGTTCATTCATCAAAC
1 TAGTTCATTGATTAAAC
*
4793667 TAGTTCATTTATTAAAC
1 TAGTTCATTGATTAAAC
4793684 TA
1 TA
4793686 ACTCTTAATT
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
15 5 0.06
17 54 0.65
18 20 0.24
20 4 0.05
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (17 bp):
TAGTTCATTGATTAAAC
Found at i:4798871 original size:23 final size:21
Alignment explanation
Indices: 4798845--4798898 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 21
4798835 AGAATGTTAA
4798845 TTTTTTAAATATATTAATTTATT
1 TTTTTTAAATATA-T-ATTTATT
4798868 TTTTTTAAA-A-ATATTTATT
1 TTTTTTAAATATATATTTATT
*
4798887 TTTATTAAATAT
1 TTTTTTAAATAT
4798899 TAGGCTTAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 15 0.54
20 2 0.07
21 1 0.04
22 1 0.04
23 9 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTTAAATATATATTTATT
Found at i:4800875 original size:11 final size:11
Alignment explanation
Indices: 4800859--4800898 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
4800849 GGAAAACTAC
4800859 ATTGTCTAACT
1 ATTGTCTAACT
4800870 ATTGTCTAA--
1 ATTGTCTAACT
4800879 ATTGTCTAACT
1 ATTGTCTAACT
4800890 ATTGTCTAA
1 ATTGTCTAA
4800899 ATATCAACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.33
11 18 0.67
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (11 bp):
ATTGTCTAACT
Found at i:4800884 original size:20 final size:20
Alignment explanation
Indices: 4800859--4800900 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
4800849 GGAAAACTAC
4800859 ATTGTCTAACTATTGTCTAA
1 ATTGTCTAACTATTGTCTAA
4800879 ATTGTCTAACTATTGTCTAA
1 ATTGTCTAACTATTGTCTAA
4800899 AT
1 AT
4800901 ATCAACTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.45
Consensus pattern (20 bp):
ATTGTCTAACTATTGTCTAA
Found at i:4801846 original size:21 final size:20
Alignment explanation
Indices: 4801822--4801865 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
4801812 TTTTATTGAA
4801822 TTTTATT-CATTTTTAATTCTT
1 TTTTATTGCATTTTT-ATT-TT
4801843 TTTTATTGCATTTTTATTTT
1 TTTTATTGCATTTTTATTTT
4801863 TTT
1 TTT
4801866 AAAAAAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 7 0.32
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTATTGCATTTTTATTTT
Found at i:4801859 original size:11 final size:10
Alignment explanation
Indices: 4801810--4801860 Score: 57
Period size: 11 Copynumber: 4.9 Consensus size: 10
4801800 TTTACATTAT
*
4801810 ATTTTTATTG
1 ATTTTTATTC
*
4801820 AATTTTATTC
1 ATTTTTATTC
4801830 ATTTTTAATTC
1 ATTTTT-ATTC
*
4801841 TTTTTTATTGC
1 ATTTTTATT-C
4801852 ATTTTTATT
1 ATTTTTATT
4801861 TTTTTAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
10 16 0.47
11 18 0.53
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (10 bp):
ATTTTTATTC
Found at i:4804079 original size:212 final size:210
Alignment explanation
Indices: 4803657--4804081 Score: 775
Period size: 212 Copynumber: 2.0 Consensus size: 210
4803647 GTTTGCCAAA
4803657 CGGTTCAGAAAAATGATGAGACCTTACCAAGGAAGAAAATTCAAACGAAACGAAGGCCTCAAAAA
1 CGGTTCAGAAAAATGATGAGACCTTACCAAGGAAGAAAATTCAAACGAAACGAAGGCCTCAAAAA
4803722 TGAACCAAAAGAGAGGACCCAATCATTTGCTATGAATGCAAAAGCCGGGGCATGTCAAATATGAT
66 TGAACCAAAAGAGAGGACCCAATCATTTGCTATGAATGCAAAAGCCGGGGCATGTCAAATATGAT
4803787 GCCCACAATTGAAGAAAAAGGGTCAATCAAAGAATAAGCACAAGGCTCATTGGGCTACATGGAGC
131 GCCCACAATTGAAGAAAAAGGGTCAATCAAAGAATAAGCACAAGGCTCATTGGGCTACATGGAGC
4803852 GATGAAGACAAATTTC
196 GATGAAGA-AAATTTC
4803868 CGGTTCAGAAAAAATGATGAGACCTTACCAAGGAAGAAAATTCAAACGAAACGAAGGCCTCAAAA
1 CGGTTCAG-AAAAATGATGAGACCTTACCAAGGAAGAAAATTCAAACGAAACGAAGGCCTCAAAA
4803933 ATGAACCAAAAGAGAAGGACCCAATCA-TTGCTATGAATGCAAAAAGCCGGGGCATGTCAAATAT
65 ATGAACCAAAAGAG-AGGACCCAATCATTTGCTATGAATGC-AAAAGCCGGGGCATGTCAAATAT
4803997 GATTGCCCACAATTGAAGAAAAAGGGTCAATCAAAGAATAAGCACAAGGCTCA-TGTGGCTACAT
128 GA-TGCCCACAATTGAAGAAAAAGGGTCAATCAAAGAATAAGCACAAGGCTCATTG-GGCTACAT
4804061 GGAGCGATGAAG-AAATTTC
191 GGAGCGATGAAGAAAATTTC
4804080 CG
1 CG
4804082 ATGAAGAGGA
Statistics
Matches: 209, Mismatches: 0, Indels: 9
0.96 0.00 0.04
Matches are distributed among these distances:
211 8 0.04
212 92 0.44
213 39 0.19
214 70 0.33
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.17
Consensus pattern (210 bp):
CGGTTCAGAAAAATGATGAGACCTTACCAAGGAAGAAAATTCAAACGAAACGAAGGCCTCAAAAA
TGAACCAAAAGAGAGGACCCAATCATTTGCTATGAATGCAAAAGCCGGGGCATGTCAAATATGAT
GCCCACAATTGAAGAAAAAGGGTCAATCAAAGAATAAGCACAAGGCTCATTGGGCTACATGGAGC
GATGAAGAAAATTTC
Found at i:4807908 original size:19 final size:21
Alignment explanation
Indices: 4807884--4807962 Score: 74
Period size: 20 Copynumber: 3.9 Consensus size: 21
4807874 TTTTGGTGCA
*
4807884 GAGGGAATCGA-TCCCCC-CT
1 GAGGGAACCGATTCCCCCACT
**
4807903 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCACT
*
4807924 GAAGGGAACCGATTCCCCCACA
1 G-AGGGAACCGATTCCCCCACT
* *
4807946 G-GGGAATCGATACCCCC
1 GAGGGAACCGATTCCCCC
4807963 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
19 10 0.20
20 20 0.40
21 2 0.04
22 18 0.36
ACGTcount: A:0.24, C:0.35, G:0.25, T:0.15
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCACT
Found at i:4810154 original size:59 final size:59
Alignment explanation
Indices: 4810086--4810212 Score: 245
Period size: 59 Copynumber: 2.2 Consensus size: 59
4810076 GATTTACAAA
4810086 AAGGGGGAGAAGAATAGGTGTTAAATGTTTTACATAATAAATTGAAGAAGTGATAAAGT
1 AAGGGGGAGAAGAATAGGTGTTAAATGTTTTACATAATAAATTGAAGAAGTGATAAAGT
*
4810145 AAGGGGGAGAAGAATAGGTGTTAAATGTTTTACATAATAAATTGAAGAAGTGTTAAAGT
1 AAGGGGGAGAAGAATAGGTGTTAAATGTTTTACATAATAAATTGAAGAAGTGATAAAGT
4810204 AAGGGGGAG
1 AAGGGGGAG
4810213 TAATTTCAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 67 1.00
ACGTcount: A:0.43, C:0.02, G:0.30, T:0.26
Consensus pattern (59 bp):
AAGGGGGAGAAGAATAGGTGTTAAATGTTTTACATAATAAATTGAAGAAGTGATAAAGT
Found at i:4812975 original size:21 final size:20
Alignment explanation
Indices: 4812942--4812982 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
4812932 ATTAAGCTCT
*
4812942 ATCAAAATTGTAAGGTGTAG
1 ATCAAAAGTGTAAGGTGTAG
4812962 ATCAATAAGTGTAAGGTGTAG
1 ATCAA-AAGTGTAAGGTGTAG
4812983 TGTTAAGACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (20 bp):
ATCAAAAGTGTAAGGTGTAG
Found at i:4819718 original size:21 final size:21
Alignment explanation
Indices: 4819688--4819729 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4819678 AACAAAACAT
* *
4819688 TTCAACCAAGTATTCAATCAA
1 TTCAACCAAGCATACAATCAA
*
4819709 TTCAATCAAGCATACAATCAA
1 TTCAACCAAGCATACAATCAA
4819730 ACAATTCCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (21 bp):
TTCAACCAAGCATACAATCAA
Found at i:4822762 original size:18 final size:18
Alignment explanation
Indices: 4822738--4822788 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
4822728 ACCGGTTACA
4822738 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
*
4822756 GCCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
4822774 ACCCGACCCGTTGAC
1 ACCCGACCCGTTGAC
4822789 AGTTGACCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.16, C:0.49, G:0.24, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:4828488 original size:16 final size:16
Alignment explanation
Indices: 4828467--4828497 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4828457 AAACTCGGGT
4828467 ACACTTAGAGAACCGA
1 ACACTTAGAGAACCGA
*
4828483 ACACTTAGCGAACCG
1 ACACTTAGAGAACCG
4828498 TTCATGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.29, G:0.19, T:0.13
Consensus pattern (16 bp):
ACACTTAGAGAACCGA
Found at i:4828678 original size:24 final size:24
Alignment explanation
Indices: 4828651--4828743 Score: 109
Period size: 24 Copynumber: 3.9 Consensus size: 24
4828641 GTAATCCATT
4828651 CGTTTATGTT-ATTTCATTTAT-TCC
1 CGTTTATGTTCA-TTCATTTATGT-C
4828675 CGTTTATGTTCATTCATTTATGTC
1 CGTTTATGTTCATTCATTTATGTC
* *
4828699 CGTGTATGTTCATTCATTTATATC
1 CGTTTATGTTCATTCATTTATGTC
* * *
4828723 AGTGTATGTTCATTCGTTTAT
1 CGTTTATGTTCATTCATTTAT
4828744 ATTCAACCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
24 61 0.97
25 2 0.03
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.54
Consensus pattern (24 bp):
CGTTTATGTTCATTCATTTATGTC
Found at i:4831985 original size:9 final size:9
Alignment explanation
Indices: 4831971--4832007 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
4831961 ATCTTTGTCT
4831971 AGTGAGAGA
1 AGTGAGAGA
4831980 AGTGAGAGA
1 AGTGAGAGA
4831989 AGTGAGAGA
1 AGTGAGAGA
4831998 AGTGAGAGA
1 AGTGAGAGA
4832007 A
1 A
4832008 AGTTCCAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.11
Consensus pattern (9 bp):
AGTGAGAGA
Found at i:4845013 original size:24 final size:24
Alignment explanation
Indices: 4844953--4845013 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 24
4844943 TAATCAGAAT
4844953 AAAAAGGG-C-AAAAAAAAAAAGC
1 AAAAAGGGACAAAAAAAAAAAAGC
** *
4844975 AAAAAAAGA-ACAAAAAGAAAAAG-
1 AAAAAGGGACA-AAAAAAAAAAAGC
4844998 AAAAAGGGACAAAAAA
1 AAAAAGGGACAAAAAA
4845014 CACATGCAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
22 6 0.20
23 12 0.40
24 12 0.40
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (24 bp):
AAAAAGGGACAAAAAAAAAAAAGC
Found at i:4845629 original size:22 final size:22
Alignment explanation
Indices: 4845601--4845644 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4845591 AGCTACCCCA
4845601 TCAAACC-TTTGAGCATCAAATG
1 TCAAACCATTT-AGCATCAAATG
4845623 TCAAACCATTTAGCATCAAATG
1 TCAAACCATTTAGCATCAAATG
4845645 AACAAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (22 bp):
TCAAACCATTTAGCATCAAATG
Found at i:4846717 original size:36 final size:35
Alignment explanation
Indices: 4846609--4846732 Score: 149
Period size: 36 Copynumber: 3.4 Consensus size: 35
4846599 ATTGAAAACA
* * *
4846609 TTTCCCTTGAAATAAATTTAGTCTCTCTTGAGATAG
1 TTTCCCTTGAAA-CAATTTTGTCTCTCTTGAGACAG
* *
4846645 TTTCCCTTGGAACTAAGTTTTGTCTCTCTTAAGACAG
1 TTTCCCTTGAAAC-AA-TTTTGTCTCTCTTGAGACAG
* *
4846682 TTTCTCTTGAAACAATTTTCGTCTATCTTGAGACAG
1 TTTCCCTTGAAACAATTTT-GTCTCTCTTGAGACAG
4846718 TTTCCCTTGAAACAA
1 TTTCCCTTGAAACAA
4846733 AACCTTTGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
35 4 0.05
36 43 0.57
37 28 0.37
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (35 bp):
TTTCCCTTGAAACAATTTTGTCTCTCTTGAGACAG
Found at i:4846826 original size:67 final size:68
Alignment explanation
Indices: 4846708--4846864 Score: 205
Period size: 68 Copynumber: 2.4 Consensus size: 68
4846698 TTTCGTCTAT
* **
4846708 CTTGAGACAGTTTCCCTTG-AA-ACAAAACCTTTGAATTTATTTCCCCTAAAACA-AATTTT-TT
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTGTT
4846769 CTCC
66 -TCC
* * *
4846773 CTTGAGACAGTTACTCTTGAAACACAAAATCTTCAAATTTATTTCCCTTAAAACATAATTTTGTT
1 CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTGTT
4846838 TCC
66 TCC
* *
4846841 CTTGAGACCGTTTCTCATGAAACA
1 CTTGAGACAGTTTCTCTTGAAACA
4846865 ACAGATATCT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
65 17 0.22
66 2 0.03
67 28 0.35
68 30 0.38
69 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (68 bp):
CTTGAGACAGTTTCTCTTGAAACACAAAACCTTCAAATTTATTTCCCCTAAAACATAATTTTGTT
TCC
Found at i:4847691 original size:105 final size:105
Alignment explanation
Indices: 4847508--4848443 Score: 1436
Period size: 105 Copynumber: 9.0 Consensus size: 105
4847498 GCACTCGAGG
* * ** *
4847508 CAACACAAGTTCAACTTCACAACGAAGGGACAACTGGTTGTCAACAAACAACTTCTCAATTTCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAG
*
4847573 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
4847614 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTATCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* *
4847679 GCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
4847719 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGCCTGT---CAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
4847781 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
4847821 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* *
4847886 GCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* *
4847926 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGT---CAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* * *
4847988 ACCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
4848028 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
*
4848093 GCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * **
4848133 AAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCGCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
4848198 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * *
4848238 CAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAATAACTTCCCAATCTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
*
4848303 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * * * * ** *
4848343 CAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAA-TTTTCCGGTTCCA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCT-CAATTTCA
* *
4848407 GAGCCAATTTCAACTTCACGACGGAGGATATTGGACT
64 GAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
4848444 TGGAACAATG
Statistics
Matches: 775, Mismatches: 47, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
102 198 0.26
105 496 0.64
106 81 0.10
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (105 bp):
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
Found at i:4847872 original size:207 final size:207
Alignment explanation
Indices: 4847508--4848443 Score: 1433
Period size: 207 Copynumber: 4.5 Consensus size: 207
4847498 GCACTCGAGG
* ** **
4847508 CAACACAAGTTCAACTTCACAACGAAGGGACAACTGGTTGTCAACAAACAACTTCTCAATTTCAG
1 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGT---C-AACAACTTCTCAATTTCAG
*
4847573 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
62 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
4847638 AAGGGACCGCTGCCTATCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAG
127 AAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAG
4847703 GATATTGGACTTCAGA
192 GATATTGGACTTCAGA
* *
4847719 CAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCC
1 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCC
4847784 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
66 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
4847849 GACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGGATA
131 GACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
4847914 TTGGACTTCAGA
196 TTGGACTTCAGA
*
4847926 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAACC
1 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCC
* *
4847991 AATTTCAACTTCACAATGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGG
66 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
4848056 GACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
131 GACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
4848121 TTGGACTTCAGA
196 TTGGACTTCAGA
* * * * **
4848133 AAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCGCAGA
1 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGT---CAACAACTTCTCAATTTCAGA
*
4848198 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGA
63 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
* * * *
4848263 AGGGACCGCTGCTTGTCAACAATAACTTCCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGG
128 AGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGG
4848328 ATATTGGAC-TCGAGA
193 ATATTGGACTTC-AGA
* * ** * ** *
4848343 CAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTCCGGTTCCAG
1 CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAAC-AAC--TTCT-CAATTTCAG
* *
4848408 AGCCAATTTCAACTTCACGACGGAGGATATTGGACT
62 AGCCAATTTCAACTTCACAACGAAGGATATTGGACT
4848444 TGGAACAATG
Statistics
Matches: 675, Mismatches: 42, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
207 405 0.60
208 4 0.01
209 2 0.00
210 191 0.28
211 73 0.11
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (207 bp):
CAACACAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCC
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
TTGGACTTCAGA
Found at i:4848119 original size:312 final size:312
Alignment explanation
Indices: 4847508--4848443 Score: 1441
Period size: 312 Copynumber: 3.0 Consensus size: 312
4847498 GCACTCGAGG
* * ** *
4847508 CAACACAAGTTCAACTTCACAACGAAGGGACAACTGGTTGTCAACAAACAACTTCTCAATTTCAG
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTCAATTTCAG
*
4847573 AGTCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
65 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
4847638 AAGGGACCGCTGCCTATCAACAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAG
130 AAGGGACCGCTGCCTGT---CAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAG
* *
4847703 GATATTGGACTTCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGCCTGT---CAACA
192 GATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACA
4847765 ACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
257 ACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
*
4847821 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCCTGTCAACAACAACTTCTCAATTTCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
* * *
4847886 GCCAATTTCAACTTCACAATGAAGGATATTGGACTTCAGACAACACAAGTTCAACTTCACGACGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
*
4847951 AGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAACCAATTTCAACTTCACAATGAAGGATA
131 AGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGGATA
4848016 TTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTT
196 TTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTT
*
4848081 CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGA
261 CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
* * **
4848133 AAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCAATCGCAGA
1 CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
*
4848198 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGA
66 GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
* * * *
4848263 AGGGACCGCTGCTTGTCAACAATAACTTCCCAATCTCAGAGCCAATTTCAACTTCACAACGAAGG
131 AGGGACCGCTGCCTGTCAAC---AACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGG
* * * *
4848328 ATATTGGAC-TCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAC
193 ATATTGGACTTC-AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AAC
* ** * * *
4848392 AA-TTTTCCGGTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACT
256 AACTTCT-CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
4848444 TGGAACAATG
Statistics
Matches: 575, Mismatches: 39, Indels: 15
0.91 0.06 0.02
Matches are distributed among these distances:
309 99 0.17
312 296 0.51
313 39 0.07
314 2 0.00
315 94 0.16
316 45 0.08
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (312 bp):
CAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGA
GCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGA
AGGGACCGCTGCCTGTCAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAATGAAGGATA
TTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTT
CTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGA
Found at i:4849466 original size:17 final size:18
Alignment explanation
Indices: 4849440--4849479 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
4849430 ATTATATAGA
4849440 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
4849456 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
4849474 TATTAT
1 TATTAT
4849480 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:4853899 original size:19 final size:19
Alignment explanation
Indices: 4853877--4853913 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4853867 TACACTTTGC
* *
4853877 TTTTACTTTGCTTCTTTCG
1 TTTTACTTAGCTTATTTCG
4853896 TTTTACTTAGCTTATTTC
1 TTTTACTTAGCTTATTTC
4853914 TTGGTTTGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.19, G:0.08, T:0.62
Consensus pattern (19 bp):
TTTTACTTAGCTTATTTCG
Found at i:4870912 original size:13 final size:12
Alignment explanation
Indices: 4870875--4870918 Score: 63
Period size: 11 Copynumber: 3.7 Consensus size: 12
4870865 TTATGCTTGA
*
4870875 AGAAAAAAATA-
1 AGAAAAAAAAAG
4870886 AGAAAAAAAAAG
1 AGAAAAAAAAAG
4870898 AGAAAAAAAAGAG
1 AGAAAAAAAA-AG
4870911 AGAAAAAA
1 AGAAAAAA
4870919 GGGGGTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 10 0.33
12 10 0.33
13 10 0.33
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (12 bp):
AGAAAAAAAAAG
Found at i:4872588 original size:113 final size:113
Alignment explanation
Indices: 4872413--4873281 Score: 1243
Period size: 113 Copynumber: 7.7 Consensus size: 113
4872403 ATCAACATTT
*
4872413 CCAGTTAGAGTTCATAATGAGAAGAACTCATATGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
*
4872478 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAATG
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
4872526 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
**
4872591 ACTTAATCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
*
4872639 CCAGTTATAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
4872704 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
4872752 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
4872817 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
*
4872865 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
* ** * * * *
4872930 ACTTGTTCAACTTTTTGCTTAAATTCATCATTCAATGGATCAGCATTA
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
* * *
4872978 CCAGTTCGAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGAAGACGTTCATAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
* * * * * * * * *
4873043 ATTTGTTCAACCTTTTGTTTAAGTTCATCATTTGATGGATCAACATTG
66 ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
4873091 CCAAG-TAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA-GAAG-A-AA-TTCATAATGAG
1 CC-AGTTAGAGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
* * * * * * * * * ** *
4873151 AAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTGATGTATCAGCTTTT
62 AAGAACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
** * * *
4873203 CCAGAGAAAGTTCATAATGAGAAAAACTCATCT---GAA-GAAGAAGAAGTTCACAATGAGAAGA
1 CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
* *
4873264 GCTTGTTCAACCTTTTGC
66 ACTTGTTCAACTTTTTGC
4873282 ATAATTTTAT
Statistics
Matches: 702, Mismatches: 46, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
106 7 0.01
107 1 0.00
108 2 0.00
109 36 0.05
110 1 0.00
111 2 0.00
112 74 0.11
113 559 0.80
114 3 0.00
115 5 0.01
116 12 0.02
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (113 bp):
CCAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGA
ACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAACAGTG
Found at i:4873420 original size:124 final size:124
Alignment explanation
Indices: 4873200--4873492 Score: 348
Period size: 124 Copynumber: 2.4 Consensus size: 124
4873190 TGTATCAGCT
4873200 TTTCCAGAGAAAGTTCATAATGAGAAAAACTCATCTG---AAG-AAGAAGAAGTTCACAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAAAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
* * * * * * * *
4873261 AGAGCTTGTTCAACCTTTTGCATAATTTTATCACAGAAGGAGATATATTAGCATCAACC
66 AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCAACATCAACC
* *
4873320 TTTCCAGAGAAAGTTCATAATGAGAATAACTCATCTGAAAAAGAAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAAAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
* * * * * *
4873385 AGAGTTTATTCAATCTTTTGAATGACTCTATCACAGATGGAAATAGGTCAACATCATCC
66 AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCAACATCAACC
* *
4873444 ---CCAGCGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAGAAGAA
1 TTTCCAG-AGAAAGTTCATAATGAGAAAAACTCATCTGAA-AAAGA-AAGAA
4873493 TTTATTCAAC
Statistics
Matches: 148, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
120 36 0.24
121 4 0.03
122 30 0.20
123 8 0.05
124 70 0.47
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (124 bp):
TTTCCAGAGAAAGTTCATAATGAGAAAAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCAACATCAACC
Found at i:4873636 original size:3 final size:3
Alignment explanation
Indices: 4873630--4873698 Score: 95
Period size: 3 Copynumber: 22.7 Consensus size: 3
4873620 TTCATTTAAA
*
4873630 TAT TAT T-T ATAT TAT TAT TAT TAT AAT TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
*
4873676 TAT TAT TAA TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
4873699 CAAGCCCAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
2 1 0.02
3 54 0.92
4 4 0.07
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:4880675 original size:35 final size:35
Alignment explanation
Indices: 4880636--4880708 Score: 92
Period size: 35 Copynumber: 2.1 Consensus size: 35
4880626 ATTGTGACTT
* * * * *
4880636 TTGGAGGCACCCTTTGAGATGAAAGAACATGTCTC
1 TTGGAAGCACACTTTGAAATAAAAGAACAGGTCTC
*
4880671 TTGGAAGCACATTTTGAAATAAAAGAACAGGTCTC
1 TTGGAAGCACACTTTGAAATAAAAGAACAGGTCTC
4880706 TTG
1 TTG
4880709 TATGAACCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (35 bp):
TTGGAAGCACACTTTGAAATAAAAGAACAGGTCTC
Found at i:4884597 original size:22 final size:22
Alignment explanation
Indices: 4884572--4884619 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
4884562 ATACTAATAT
*
4884572 AATA-TAAAAAAATAGAATAGAC
1 AATACTAAAAAAATAGAA-AGAA
* *
4884594 AATACTAATATAATAGAAAGAA
1 AATACTAAAAAAATAGAAAGAA
4884616 AATA
1 AATA
4884620 ATTATCTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (22 bp):
AATACTAAAAAAATAGAAAGAA
Found at i:4884608 original size:18 final size:17
Alignment explanation
Indices: 4884561--4884612 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
4884551 ATCACTAATT
*
4884561 AATACTAATATAATATA
1 AATACTAATATAATAGA
* *
4884578 AA-A-AAATAGAATAGA
1 AATACTAATATAATAGA
4884593 CAATACTAATATAATAGA
1 -AATACTAATATAATAGA
4884611 AA
1 AA
4884613 GAAAATAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
15 9 0.33
16 3 0.11
17 5 0.19
18 10 0.37
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.25
Consensus pattern (17 bp):
AATACTAATATAATAGA
Found at i:4887617 original size:18 final size:18
Alignment explanation
Indices: 4887586--4887625 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
4887576 GATGATATCA
* * *
4887586 ATATTGATGCTAGTGACG
1 ATATTAATGATAGTAACG
4887604 ATATTAATGATAGTAACG
1 ATATTAATGATAGTAACG
4887622 ATAT
1 ATAT
4887626 CAATCATGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (18 bp):
ATATTAATGATAGTAACG
Found at i:4889077 original size:24 final size:24
Alignment explanation
Indices: 4889045--4889092 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
4889035 CGTTGTATTA
4889045 AATTTGTTCATTGTCAACGAATCG
1 AATTTGTTCATTGTCAACGAATCG
*
4889069 AATTTGTTCATTGTCAATGAATCG
1 AATTTGTTCATTGTCAACGAATCG
4889093 CAAGTAACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (24 bp):
AATTTGTTCATTGTCAACGAATCG
Found at i:4889910 original size:5 final size:5
Alignment explanation
Indices: 4889900--4889944 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
4889890 AAACAAATTG
** *
4889900 AAAAT AAAAT AAAAT AAAAT AAACG GAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
4889945 GGGTTGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:4896707 original size:35 final size:35
Alignment explanation
Indices: 4896658--4896725 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
4896648 TTTGAAAAAC
*
4896658 ATCTTTTGATAAAGCAACATCTCATTTGGAAAGGT
1 ATCTTTTGAGAAAGCAACATCTCATTTGGAAAGGT
* * *
4896693 ATCTTTTGGGAAAGCAACATGTCTTTTGGAAAG
1 ATCTTTTGAGAAAGCAACATCTCATTTGGAAAG
4896726 ACATATCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (35 bp):
ATCTTTTGAGAAAGCAACATCTCATTTGGAAAGGT
Found at i:4896894 original size:37 final size:39
Alignment explanation
Indices: 4896853--4896926 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
4896843 TCATCATGGT
4896853 TGTTGGAA-TGAA-AGAAAACAACTATTTCCCTTGTAGC
1 TGTTGGAAGTGAAGAGAAAACAACTATTTCCCTTGTAGC
* * *
4896890 TGTTGGAAGTGAAGGGAAAACACCTCTTTCCCTTGTA
1 TGTTGGAAGTGAAGAGAAAACAACTATTTCCCTTGTA
4896927 TCCTTTGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 8 0.25
38 4 0.12
39 20 0.62
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (39 bp):
TGTTGGAAGTGAAGAGAAAACAACTATTTCCCTTGTAGC
Found at i:4904106 original size:39 final size:39
Alignment explanation
Indices: 4904052--4904136 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
4904042 TATTGAATGT
*
4904052 CATTTCTCCCTAGTTCTCCTCTAACTTTTGAGGCTGATA
1 CATTTTTCCCTAGTTCTCCTCTAACTTTTGAGGCTGATA
4904091 CATTTTTCCCTAGTTCTCCTCTAACTTTTGAGGCTGATA
1 CATTTTTCCCTAGTTCTCCTCTAACTTTTGAGGCTGATA
*
4904130 AATTTTT
1 CATTTTT
4904137 GATAAAGTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.45
Consensus pattern (39 bp):
CATTTTTCCCTAGTTCTCCTCTAACTTTTGAGGCTGATA
Found at i:4905358 original size:35 final size:35
Alignment explanation
Indices: 4905301--4905386 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
4905291 ATTGTGACTT
* * * * * *
4905301 TTGGATGCATCTTTAGAGATGAAATAACATGTCTC
1 TTGGAGGCACCTTTTGAAATGAAAGAAAATGTCTC
* *
4905336 TTGGAGGTACCTTTTGAAATGAACGAAAATGTCTC
1 TTGGAGGCACCTTTTGAAATGAAAGAAAATGTCTC
4905371 TTGGAGGCACCTTTTG
1 TTGGAGGCACCTTTTG
4905387 GTGAAGCATC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (35 bp):
TTGGAGGCACCTTTTGAAATGAAAGAAAATGTCTC
Found at i:4905420 original size:35 final size:33
Alignment explanation
Indices: 4905381--4905539 Score: 131
Period size: 35 Copynumber: 4.6 Consensus size: 33
4905371 TTGGAGGCAC
4905381 CTTTTGGTGAAGCATCATGTCGTTTGGAAAGAAAT
1 CTTTTGGTGAAGCATCATGTC-TTTGGAAAG-AAT
* *
4905416 CTTTTGATGAAGCAACATGTCTTTTGGAAAGGAAT
1 CTTTTGGTGAAGCATCATGTC-TTTGGAAA-GAAT
* * *
4905451 ATTTTGGTGAAGCAACATATCTCTTGGAAAGGCAAT
1 CTTTTGGTGAAGCATCATGTCT-TTGGAAA-G-AAT
* * *
4905487 -TCTTGGAGAAGCATCATGTACTTTGGAGAAGCAT
1 CTTTTGGTGAAGCATCATGT-CTTTGGA-AAGAAT
** *
4905521 CCCTTGATGAAGCATCATG
1 CTTTTGGTGAAGCATCATG
4905540 ACTCCTCATA
Statistics
Matches: 104, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
34 3 0.03
35 93 0.89
36 8 0.08
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (33 bp):
CTTTTGGTGAAGCATCATGTCTTTGGAAAGAAT
Found at i:4917508 original size:24 final size:24
Alignment explanation
Indices: 4917463--4917508 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
4917453 AACCCATTCT
* ***
4917463 ATTTAATTTTATTTTTGTTTTTTG
1 ATTTAATTGTATTTTCAATTTTTG
4917487 ATTTAATTGTATTTTCAATTTT
1 ATTTAATTGTATTTTCAATTTT
4917509 ATTCAATTCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.70
Consensus pattern (24 bp):
ATTTAATTGTATTTTCAATTTTTG
Found at i:4919705 original size:30 final size:31
Alignment explanation
Indices: 4919669--4919730 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
4919659 TAAAATTTTA
* * *
4919669 GGGACCATTTTGTAATTTTTG-AAAAGTTGG
1 GGGACCAATTCGTAATTTTAGAAAAAGTTGG
4919699 GGGACCAATTCGTAATTTTAGAAAAAGTTGG
1 GGGACCAATTCGTAATTTTAGAAAAAGTTGG
4919730 G
1 G
4919731 AATGGTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 18 0.64
31 10 0.36
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.34
Consensus pattern (31 bp):
GGGACCAATTCGTAATTTTAGAAAAAGTTGG
Found at i:4920997 original size:45 final size:45
Alignment explanation
Indices: 4920908--4921117 Score: 298
Period size: 45 Copynumber: 4.7 Consensus size: 45
4920898 GTGAGCATGC
* *
4920908 AAATAAGCTTACAAGCTTATGGAAT-AATGGCAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
4920952 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
* * *
4920997 AAATAAGCTTACGAGCTTATGAAACAAATGGTAAGTATATTGTTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
* * ** *
4921042 AAATAA-CTTACGAGTTTTTGGGTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
* *
4921086 AAATAAGCTTACAAGCTTATGGGATAAATGGT
1 AAATAAGCTTACGAGCTTATGGAATAAATGGT
4921118 GAGAAATTTT
Statistics
Matches: 147, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
44 60 0.41
45 87 0.59
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
Found at i:4921115 original size:89 final size:90
Alignment explanation
Indices: 4920908--4921117 Score: 307
Period size: 89 Copynumber: 2.4 Consensus size: 90
4920898 GTGAGCATGC
*
4920908 AAATAAGCTTACAAGCTTATGGAAT-AATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTAT
1 AAATAAGCTTACAAGCTTATGGAATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT
4920972 GGAATAAATGGTAAGTATATTGGTA
66 GGAATAAATGGTAAGTATATTGGTA
* * * * * *
4920997 AAATAAGCTTACGAGCTTATGAAACAAATGGTAAGTATATTGTTAAAATAA-CTTACGAGTTTTT
1 AAATAAGCTTACAAGCTTATGGAATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT
** *
4921061 GGGTTAAATGGTAAGTATTTTGGTA
66 GGAATAAATGGTAAGTATATTGGTA
*
4921086 AAATAAGCTTACAAGCTTATGGGATAAATGGT
1 AAATAAGCTTACAAGCTTATGGAATAAATGGT
4921118 GAGAAATTTT
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
89 83 0.78
90 23 0.22
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (90 bp):
AAATAAGCTTACAAGCTTATGGAATAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTAT
GGAATAAATGGTAAGTATATTGGTA
Found at i:4922970 original size:18 final size:18
Alignment explanation
Indices: 4922949--4922986 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
4922939 GATATCAACA
4922949 ATGGTTATGATTAAGATG
1 ATGGTTATGATTAAGATG
4922967 ATGGTTATGATTAAGATG
1 ATGGTTATGATTAAGATG
4922985 AT
1 AT
4922987 ATATGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (18 bp):
ATGGTTATGATTAAGATG
Found at i:4928471 original size:75 final size:75
Alignment explanation
Indices: 4928348--4928497 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
4928338 AAAGTCTATT
4928348 AAATCTCCCAGGTTTCGTCTAATCATAAAATAAAAAACAAAAACAAAATAGTAACTTGCCGAAGT
1 AAATCTCCCAGGTTTCGTCTAATCATAAAATAAAAAACAAAAACAAAATAGTAACTTGCCGAAGT
4928413 ACCTGACAAC
66 ACCTGACAAC
4928423 AAATCTCCCAGGTTTCGTCTAATCATAAAATAAAAAACAAAAACAAAATAGTAACTTGCCGAAGT
1 AAATCTCCCAGGTTTCGTCTAATCATAAAATAAAAAACAAAAACAAAATAGTAACTTGCCGAAGT
4928488 ACCTGACAAC
66 ACCTGACAAC
4928498 GACGCCAATT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.47, C:0.21, G:0.11, T:0.21
Consensus pattern (75 bp):
AAATCTCCCAGGTTTCGTCTAATCATAAAATAAAAAACAAAAACAAAATAGTAACTTGCCGAAGT
ACCTGACAAC
Found at i:4929978 original size:51 final size:51
Alignment explanation
Indices: 4929891--4929997 Score: 142
Period size: 51 Copynumber: 2.1 Consensus size: 51
4929881 AGATGTACAT
* * **
4929891 ACTTACAGTGGTGTAAGTTTGAGCTAAGTGGTACACTTTTTTATTTTAGTC
1 ACTTACACTGGTGTAAGTATGAGCTAAGTGCCACACTTTTTTATTTTAGTC
* * * *
4929942 ACTTACACTGGTGTAAGTATGTGTTAATTGCCACACTTTTTTATTTTATTC
1 ACTTACACTGGTGTAAGTATGAGCTAAGTGCCACACTTTTTTATTTTAGTC
4929993 ACTTA
1 ACTTA
4929998 GATTGTTGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (51 bp):
ACTTACACTGGTGTAAGTATGAGCTAAGTGCCACACTTTTTTATTTTAGTC
Found at i:4930922 original size:72 final size:73
Alignment explanation
Indices: 4930801--4930942 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 73
4930791 CTCAACCGGT
* * *
4930801 GAAATAGTCTATTAAGGACCTTAGCTCTGCCAAAGTATCAATGTAATCCATATTTT-GTAAATTT
1 GAAATAGTCCATTAAGGACCTTAGCGCTGCAAAAGTATCAATGTAATCCATATTTTCGTAAATTT
4930865 CTTCTAGA
66 CTTCTAGA
* * *
4930873 GAAATGGTCCATTAAGGGCCTTAGCGCTGCAAAAGTATCAATGTGATCCATATTTTCGTAAATTT
1 GAAATAGTCCATTAAGGACCTTAGCGCTGCAAAAGTATCAATGTAATCCATATTTTCGTAAATTT
4930938 CTTCT
66 CTTCT
4930943 TTTGTTCCGG
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 50 0.79
73 13 0.21
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (73 bp):
GAAATAGTCCATTAAGGACCTTAGCGCTGCAAAAGTATCAATGTAATCCATATTTTCGTAAATTT
CTTCTAGA
Found at i:4931204 original size:22 final size:22
Alignment explanation
Indices: 4931176--4931218 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
4931166 TGACCCTTGC
4931176 ATGATTTTCTACTAGCGCATAT
1 ATGATTTTCTACTAGCGCATAT
*
4931198 ATGATTTTCTACTTGCGCATA
1 ATGATTTTCTACTAGCGCATA
4931219 CTTCAGTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (22 bp):
ATGATTTTCTACTAGCGCATAT
Found at i:4932422 original size:11 final size:11
Alignment explanation
Indices: 4932377--4932415 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
4932367 ATATGATACT
4932377 AATAATATAA-A
1 AATAATA-AATA
*
4932388 AGTAATAAATA
1 AATAATAAATA
4932399 AATAATAAATA
1 AATAATAAATA
4932410 AATAAT
1 AATAAT
4932416 GATTAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 2 0.08
11 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
AATAATAAATA
Found at i:4933702 original size:3 final size:3
Alignment explanation
Indices: 4933694--4933756 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
4933684 TGTAATTATT
* *
4933694 TAA TAA TAA TATA TAA TAA TAAA TAA -AA TTA TAA TAA T-A TAT TAA
1 TAA TAA TAA TA-A TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
* *
4933739 TAA TAA TAT TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA
4933757 ATGGGTAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
2 4 0.08
3 38 0.79
4 6 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:4933709 original size:10 final size:10
Alignment explanation
Indices: 4933696--4933743 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
4933686 TAATTATTTA
4933696 ATAATAATAT
1 ATAATAATAT
*
4933706 ATAATAATAA
1 ATAATAATAT
4933716 ATAA-AAT-T
1 ATAATAATAT
4933724 ATAATAATAT
1 ATAATAATAT
4933734 ATTAATAATA
1 A-TAATAATA
4933744 ATATTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
8 4 0.12
9 6 0.18
10 15 0.45
11 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAATAATAT
Found at i:4933727 original size:25 final size:25
Alignment explanation
Indices: 4933699--4933749 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
4933689 TTATTTAATA
4933699 ATAAT-ATATAATAATAAATAAAATT
1 ATAATAATATAATAAT-AATAAAATT
* *
4933724 ATAATAATATATTAATAATAATATT
1 ATAATAATATAATAATAATAAAATT
4933749 A
1 A
4933750 AAAATAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATAATAATATAATAATAATAAAATT
Found at i:4934301 original size:98 final size:100
Alignment explanation
Indices: 4934180--4934706 Score: 335
Period size: 114 Copynumber: 4.9 Consensus size: 100
4934170 ATCCATTAAG
* *
4934180 TGATGAATTTAAGCAAAAGGTTGAGCAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGA
1 TGATGAATTTAA-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGA
4934245 TGAGTTCTTATCATTATGAACTCTAACTGGTATTGC
65 TGAGTTCTTATCATTATGAACTCTAACTGGTATTGC
* *
4934281 TGATGAATTTAA-AAAA-GTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGAT
1 TGATGAATTTAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGAT
* * *
4934344 GAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAG-
66 GAGTTCTTATCATTATGAA----CTCT-----AA-CTGGT--AT--TGC
* * * * * *
4934392 TGATGGATTTGAGCAAAAGGTTGATCAAATTCTTCTCATTATGAATTTCTTATTCCTTCTTCAGA
1 TGATGAATTT-AACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGA
* * *
4934457 TAAGTTCTTCTCATTATGAACTTTAACTGGAAAAAGCTGATCCAT-C
65 TGAGTTCTTATCATTATGAACTCTAACT-G-----G-T-AT---TGC
* * * * *
4934503 AAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATTAATTTCTTCTTCCTTCTTC
1 ---TGATGAATTT-AACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTC
* * **
4934568 AGATGAGTTCTTCTCATTATAAACTTTCTCTGGAAAAGGCTGATCCAT-C
62 AGATGAGTTCTTATCATTATGAA----CTCT--AACTGG-T-AT---TGC
* * * *
4934617 AAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC
1 ---TGATGAATTT-AACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTC
*
4934682 AGATGAGTTCTTCTCATTATGAACT
62 AGATGAGTTCTTATCATTATGAACT
4934707 TTCTCTGGAA
Statistics
Matches: 361, Mismatches: 30, Indels: 61
0.80 0.07 0.13
Matches are distributed among these distances:
98 61 0.17
99 4 0.01
101 12 0.03
102 4 0.01
104 2 0.01
105 3 0.01
107 2 0.01
108 4 0.01
110 9 0.02
111 12 0.03
112 2 0.01
113 4 0.01
114 236 0.65
118 3 0.01
119 1 0.00
120 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (100 bp):
TGATGAATTTAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGAT
GAGTTCTTATCATTATGAACTCTAACTGGTATTGC
Found at i:4934411 original size:212 final size:219
Alignment explanation
Indices: 4934137--4934706 Score: 789
Period size: 228 Copynumber: 2.6 Consensus size: 219
4934127 CTTCTTCTTC
* * * * *
4934137 CTTCTTCATTATGAACTTTCTTTGG-AAAAGTTGATCCATTAAGTGATGAATTTAAGCAAAAGGT
1 CTTC-TCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGT
* * *
4934201 TGAGCAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTCTTATCATTATGAAC
65 TGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
* *
4934266 TCTAACT-G-G-T-AT-TGC-TGATGAATTT-A-AAAAAGTTGAATAAGTTCTTCTCATTATGAA
130 TCTAACTGGAGCTGATCT-CATGATGAATTTGACAAAAAGTTGAACAAATTCTTCTCATTATGAA
*
4934323 CTTCTTCTTTCTTCTTCAGATGAGTT
194 CTTCTTCTTCCTTCTTCAGATGAGTT
4934349 CTTCTCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
1 CTTCTCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
* * *
4934414 GATCAAATTCTTCTCATTATGAATTTCTTATTCCTTCTTCAGATAAGTTCTTCTCATTATGAACT
66 GAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * *
4934479 TTAACTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCA
131 CTAACTGG----AGCTGAT-C-TC-A-TGATGAATTTGA-CAAAAAGTTGAACAAATTCTTCTCA
* *
4934544 TTATTAATTTCTTCTTCCTTCTTCAGATGAGTT
187 TTATGAACTTCTTCTTCCTTCTTCAGATGAGTT
* *
4934577 CTTCTCATTATAAACTTTCTCTGGAAAAGGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
1 CTTCTCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
4934642 GAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
66 GAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
4934707 TTCTCTGGAA
Statistics
Matches: 317, Mismatches: 23, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
211 19 0.06
212 105 0.33
213 1 0.00
218 1 0.00
219 1 0.00
220 2 0.01
222 1 0.00
223 1 0.00
225 9 0.03
226 1 0.00
228 176 0.56
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (219 bp):
CTTCTCATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
GAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
CTAACTGGAGCTGATCTCATGATGAATTTGACAAAAAGTTGAACAAATTCTTCTCATTATGAACT
TCTTCTTCCTTCTTCAGATGAGTT
Found at i:4934415 original size:114 final size:114
Alignment explanation
Indices: 4934292--4934742 Score: 737
Period size: 114 Copynumber: 4.0 Consensus size: 114
4934282 GATGAATTTA
* * * * *
4934292 AAAAAGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
4934357 TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
66 TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
* * *
4934406 AAAAGGTTGATCAAATTCTTCTCATTATGAATTTCTTATTCCTTCTTCAGATAAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
**
4934471 TATGAACTTTAACTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
66 TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
*
4934520 AAAAGGTTGAACAAATTCTTCTCATTATTAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
4934585 TATAAACTTTCTCTGGAAAAGGCTGATCCATCAAGTGATGGATTTGAGC
66 TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
4934634 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
4934699 TATGAACTTTCTCTGG-AAAAGTTAATCCAT--TGTGATGGATTTGA
66 TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
4934743 ATCTTTGCTA
Statistics
Matches: 313, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
111 13 0.04
113 11 0.04
114 289 0.92
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (114 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGC
Found at i:4935903 original size:19 final size:17
Alignment explanation
Indices: 4935879--4935927 Score: 64
Period size: 16 Copynumber: 2.8 Consensus size: 17
4935869 AAAATAAAAG
4935879 AATAAATTGAATTTTCGAA
1 AATAAATTGAATTTTC--A
*
4935898 AATAAATTGAA-TCTCA
1 AATAAATTGAATTTTCA
4935914 AATAAATTGAATTT
1 AATAAATTGAATTT
4935928 AGAGAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 1 0.04
18 3 0.11
19 11 0.41
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (17 bp):
AATAAATTGAATTTTCA
Found at i:4936294 original size:18 final size:17
Alignment explanation
Indices: 4936273--4936338 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 17
4936263 CATCTTGACC
4936273 CTCTTTTTTTATTTTCTT
1 CTCTTTTTTTATTTT-TT
*
4936291 CTCTTTTTTTCTTTTTT
1 CTCTTTTTTTATTTTTT
*
4936308 -TCTTTTTCTCTTTTTTTT
1 CTCTTTTT-T-TATTTTTT
4936326 CT-TTTTTTTATTT
1 CTCTTTTTTTATTT
4936339 CATTTTTTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
16 11 0.26
17 4 0.10
18 26 0.62
19 1 0.02
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
CTCTTTTTTTATTTTTT
Found at i:4936303 original size:8 final size:8
Alignment explanation
Indices: 4936274--4936333 Score: 75
Period size: 8 Copynumber: 7.1 Consensus size: 8
4936264 ATCTTGACCC
4936274 TCTTTTTT
1 TCTTTTTT
*
4936282 TATTTTCTT
1 TCTTTT-TT
4936291 CTCTTTTTT
1 -TCTTTTTT
4936300 TCTTTTTT
1 TCTTTTTT
*
4936308 TCTTTTTC
1 TCTTTTTT
4936316 TCTTTTTTT
1 TC-TTTTTT
4936325 TCTTTTTT
1 TCTTTTTT
4936333 T
1 T
4936334 TATTTCATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
8 29 0.64
9 11 0.24
10 5 0.11
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (8 bp):
TCTTTTTT
Found at i:4936304 original size:26 final size:26
Alignment explanation
Indices: 4936274--4936338 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
4936264 ATCTTGACCC
4936274 TCTTTTTTTATTTTCTTCTC-TTTTTT
1 TCTTTTTTTATTTT-TTCTCTTTTTTT
*
4936300 TCTTTTTTT-CTTTTTCTCTTTTTTT
1 TCTTTTTTTATTTTTTCTCTTTTTTT
4936325 TCTTTTTTTTATTT
1 TC-TTTTTTTATTT
4936339 CATTTTTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 5 0.15
25 11 0.32
26 16 0.47
27 2 0.06
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (26 bp):
TCTTTTTTTATTTTTTCTCTTTTTTT
Found at i:4936305 original size:25 final size:25
Alignment explanation
Indices: 4936274--4936333 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
4936264 ATCTTGACCC
*
4936274 TCTTTTTTT-ATTTTCTTCTCTTTTTT
1 TCTTTTTTTCTTTTTC-TCT-TTTTTT
4936300 TCTTTTTTTCTTTTTCTCTTTTTTT
1 TCTTTTTTTCTTTTTCTCTTTTTTT
4936325 TCTTTTTTT
1 TCTTTTTTT
4936334 TATTTCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 15 0.47
26 12 0.38
27 5 0.16
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (25 bp):
TCTTTTTTTCTTTTTCTCTTTTTTT
Found at i:4936347 original size:8 final size:7
Alignment explanation
Indices: 4936274--4936349 Score: 50
Period size: 7 Copynumber: 10.6 Consensus size: 7
4936264 ATCTTGACCC
4936274 TCTTTTT
1 TCTTTTT
*
4936281 T-TATTT
1 TCTTTTT
* *
4936287 TCTTCTC
1 TCTTTTT
4936294 T-TTTTT
1 TCTTTTT
4936300 TCTTTTTT
1 TC-TTTTT
4936308 TCTTTTT
1 TCTTTTT
4936315 CTCTTTTTTT
1 -TC--TTTTT
4936325 TCTTTTT
1 TCTTTTT
*
4936332 T-TTATT
1 TCTTTTT
4936338 TCATTTTT
1 TC-TTTTT
4936346 TCTT
1 TCTT
4936350 CAAGCATAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 16
0.69 0.10 0.21
Matches are distributed among these distances:
6 14 0.26
7 17 0.32
8 15 0.28
9 2 0.04
10 5 0.09
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (7 bp):
TCTTTTT
Found at i:4939899 original size:9 final size:9
Alignment explanation
Indices: 4939876--4939905 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
4939866 GAAAAACAAT
4939876 GAATGTAAA
1 GAATGTAAA
4939885 -AATGTAAA
1 GAATGTAAA
4939893 GAATGTAAA
1 GAATGTAAA
4939902 GAAT
1 GAAT
4939906 TATTGCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (9 bp):
GAATGTAAA
Found at i:4949132 original size:10 final size:10
Alignment explanation
Indices: 4949119--4949156 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
4949109 TAATTATTTA
4949119 ATAATAATAT
1 ATAATAATAT
*
4949129 ATAATAATAA
1 ATAATAATAT
4949139 ATAA-AAT-T
1 ATAATAATAT
4949147 ATAATAATAT
1 ATAATAATAT
4949157 TAAAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
8 4 0.17
9 6 0.25
10 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATAATAATAT
Found at i:4949162 original size:18 final size:18
Alignment explanation
Indices: 4949118--4949155 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
4949108 ATAATTATTT
4949118 AATAATAATATATAATAATA
1 AATAA-AAT-TATAATAATA
4949138 AATAAAATTATAATAATA
1 AATAAAATTATAATAATA
4949156 TTAAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AATAAAATTATAATAATA
Found at i:4952582 original size:51 final size:51
Alignment explanation
Indices: 4952527--4952630 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
4952517 AATCGTTTTT
*
4952527 ATTAATATGTCACTTCATCATAGTAACATTAGTTAAATGCTTGTAACTAAA
1 ATTAATATGTCACTTCATCAAAGTAACATTAGTTAAATGCTTGTAACTAAA
4952578 ATTAATATGTCACTTCATCAAAGTAACATTAGTTAAATGCTTGTAACTAAA
1 ATTAATATGTCACTTCATCAAAGTAACATTAGTTAAATGCTTGTAACTAAA
4952629 AT
1 AT
4952631 AAGATAAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (51 bp):
ATTAATATGTCACTTCATCAAAGTAACATTAGTTAAATGCTTGTAACTAAA
Found at i:4957034 original size:3 final size:3
Alignment explanation
Indices: 4957026--4957055 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
4957016 CACACGGCTG
4957026 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
4957056 TAATAATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:4957250 original size:2 final size:2
Alignment explanation
Indices: 4957243--4957269 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4957233 TTTTATTTAA
4957243 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4957270 AAAGAACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4960152 original size:55 final size:55
Alignment explanation
Indices: 4960037--4960194 Score: 219
Period size: 55 Copynumber: 2.9 Consensus size: 55
4960027 TATATAGTAG
* * * *
4960037 TTCATCAACTCATGATGAATTCCGTGG-GTTGCACATATCGTGCTTGTAAAATTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTAAAATTA
** * * *
4960091 TTCATCAACTCATGATGAATTATGTGGATTTGCACACATAATGCATGTACAGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTAAAATTA
*
4960146 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCCTGTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTA
4960195 GTACACTTAG
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 25 0.28
55 65 0.72
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (55 bp):
TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATGTAAAATTA
Found at i:4963913 original size:20 final size:20
Alignment explanation
Indices: 4963888--4963935 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
4963878 ACTAAAAATG
4963888 AGTTCTAAAGGAATTCCTCT
1 AGTTCTAAAGGAATTCCTCT
4963908 AGTTCTAAAGGAATTCCTCT
1 AGTTCTAAAGGAATTCCTCT
4963928 AGTTCTAA
1 AGTTCTAA
4963936 CCAACTCTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (20 bp):
AGTTCTAAAGGAATTCCTCT
Found at i:4965737 original size:55 final size:54
Alignment explanation
Indices: 4965613--4965943 Score: 353
Period size: 55 Copynumber: 6.0 Consensus size: 54
4965603 GCAATACTTA
* * * * * *
4965613 TACGG-TAGTTCATTAACTCATGATGAATTTCGTGG-GTTGTACATATCGTGCATG
1 TACGGTTA-TTCATCAACTCATGATG-ATTTCGTGGATTTGCACACATAGTGCGTG
* * * *
4965667 TACGGTTATTTATCAACCCATGATGATTTCCGTGGATTTGCACACATAATGCTTG
1 TACGGTTATTCATCAACTCATGATGATTT-CGTGGATTTGCACACATAGTGCGTG
*
4965722 TACGGTTATTCATCAAATCATGATGAATTAT-GTGGATTTGCACACATAGTGCGTG
1 TACGGTTATTCATCAACTCATGATG-ATT-TCGTGGATTTGCACACATAGTGCGTG
* * * * *
4965777 TACGGTTAATCATCAACTCATGATGAATTTCATGGATTTGTACACATAGTTCCTG
1 TACGGTTATTCATCAACTCATGATG-ATTTCGTGGATTTGCACACATAGTGCGTG
* * * * *
4965832 TATGGTTATTGATCAACTTATGATGAATTTCGTGGATTTGTACACATAGTGCTTG
1 TACGGTTATTCATCAACTCATGATG-ATTTCGTGGATTTGCACACATAGTGCGTG
* * *
4965887 TACAGTTATTCATCAACTCATGATGAATTCCATGGATTTGCACACATAGTGCGTG
1 TACGGTTATTCATCAACTCATGATG-ATTTCGTGGATTTGCACACATAGTGCGTG
4965942 TA
1 TA
4965944 GTACACTTAG
Statistics
Matches: 236, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
53 4 0.02
54 25 0.11
55 203 0.86
56 3 0.01
57 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (54 bp):
TACGGTTATTCATCAACTCATGATGATTTCGTGGATTTGCACACATAGTGCGTG
Found at i:4965814 original size:110 final size:110
Alignment explanation
Indices: 4965613--4965943 Score: 409
Period size: 110 Copynumber: 3.0 Consensus size: 110
4965603 GCAATACTTA
* * * *
4965613 TACGG-TAGTTCATTAACTCATGATGAATTTCGTGG-GTTGTACATATCGTGCATGTACGGTTAT
1 TACGGTTA-TTCATCAACTCATGATGAATTTCGTGGATTTGTACACATAGTGCATGTACGGTTAT
* * * * *
4965676 TTATCAACCCATGATG-ATTTCCGTGGATTTGCACACATAATGCTTG
65 TCATCAACTCATGATGAATTT-CATGGATTTGCACACATAGTGCCTG
* * * *
4965722 TACGGTTATTCATCAAATCATGATGAATTAT-GTGGATTTGCACACATAGTGCGTGTACGGTTAA
1 TACGGTTATTCATCAACTCATGATGAATT-TCGTGGATTTGTACACATAGTGCATGTACGGTTAT
* *
4965786 TCATCAACTCATGATGAATTTCATGGATTTGTACACATAGTTCCTG
65 TCATCAACTCATGATGAATTTCATGGATTTGCACACATAGTGCCTG
* * * * *
4965832 TATGGTTATTGATCAACTTATGATGAATTTCGTGGATTTGTACACATAGTGCTTGTACAGTTATT
1 TACGGTTATTCATCAACTCATGATGAATTTCGTGGATTTGTACACATAGTGCATGTACGGTTATT
* *
4965897 CATCAACTCATGATGAATTCCATGGATTTGCACACATAGTGCGTG
66 CATCAACTCATGATGAATTTCATGGATTTGCACACATAGTGCCTG
4965942 TA
1 TA
4965944 GTACACTTAG
Statistics
Matches: 190, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
109 29 0.15
110 157 0.83
111 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (110 bp):
TACGGTTATTCATCAACTCATGATGAATTTCGTGGATTTGTACACATAGTGCATGTACGGTTATT
CATCAACTCATGATGAATTTCATGGATTTGCACACATAGTGCCTG
Found at i:4965868 original size:165 final size:164
Alignment explanation
Indices: 4965622--4965943 Score: 457
Period size: 165 Copynumber: 2.0 Consensus size: 164
4965612 ATACGGTAGT
* * * * *
4965622 TCATTAACTCATGATGAATTTCGTGGGTTGTACATATCGTGCATGTACGGTTATTTATCAACCCA
1 TCATCAACTCATGATGAATTTCATGGGTTGTACACATAGTGCATGTACGGTTATTGATCAACCCA
*
4965687 TGATGATTTCCGTGGATTTGCACACATAATGCTTGTACGGTTATTCATCAAATCATGATGAATTA
66 TGATGATTTCCGTGGATTTGCACACATAATGCTTGTACAGTTATTCATCAAATCATGATGAATTA
**
4965752 TGTGGATTTGCACACATAGTGCGTGTACGGTTAA
131 CATGGATTTGCACACATAGTGCGTGTACGGTTAA
* * * * **
4965786 TCATCAACTCATGATGAATTTCATGGATTTGTACACATAGTTCCTGTATGGTTATTGATCAACTT
1 TCATCAACTCATGATGAATTTCATGG-GTTGTACACATAGTGCATGTACGGTTATTGATCAACCC
* * *
4965851 ATGATGAATTT-CGTGGATTTGTACACATAGTGCTTGTACAGTTATTCATCAACTCATGATGAAT
65 ATGATG-ATTTCCGTGGATTTGCACACATAATGCTTGTACAGTTATTCATCAAATCATGATGAAT
*
4965915 TCCATGGATTTGCACACATAGTGCGTGTA
129 TACATGGATTTGCACACATAGTGCGTGTA
4965944 GTACACTTAG
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
164 24 0.17
165 110 0.80
166 4 0.03
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (164 bp):
TCATCAACTCATGATGAATTTCATGGGTTGTACACATAGTGCATGTACGGTTATTGATCAACCCA
TGATGATTTCCGTGGATTTGCACACATAATGCTTGTACAGTTATTCATCAAATCATGATGAATTA
CATGGATTTGCACACATAGTGCGTGTACGGTTAA
Found at i:4967480 original size:22 final size:22
Alignment explanation
Indices: 4967455--4967513 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 22
4967445 TTTTTAAATG
*
4967455 GAGTATCGATACTACTAGGGGA
1 GAGTATCAATACTACTAGGGGA
*
4967477 GAGTATCAATATAGTACTAGGGGA
1 GAGTATC-A-ATACTACTAGGGGA
4967501 GAGTATCAATACT
1 GAGTATCAATACT
4967514 TCCCATCAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 11 0.34
23 1 0.03
24 20 0.62
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (22 bp):
GAGTATCAATACTACTAGGGGA
Found at i:4968278 original size:13 final size:12
Alignment explanation
Indices: 4968242--4968275 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
4968232 ATTTACTTTT
4968242 TTTATTTTTTAA
1 TTTATTTTTTAA
4968254 TTTATTTTTTAA
1 TTTATTTTTTAA
4968266 TTTATTTTTT
1 TTTATTTTTT
4968276 TAAAAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTATTTTTTAA
Found at i:4968605 original size:22 final size:23
Alignment explanation
Indices: 4968580--4968625 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
4968570 GAGGAATATA
*
4968580 AAATAAAAATATA-ATTTAAACT
1 AAATAAAAATATATATTAAAACT
* *
4968602 AAATATATATATATATTAAAACT
1 AAATAAAAATATATATTAAAACT
4968625 A
1 A
4968626 TTGGATCGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
AAATAAAAATATATATTAAAACT
Found at i:4971233 original size:21 final size:21
Alignment explanation
Indices: 4971204--4971257 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
4971194 TTTTAAAGGG
*
4971204 GATCAATCCTTTGGTCAAAGA
1 GATCGATCCTTTGGTCAAAGA
* * *
4971225 GATCGATCCTTT-TTCTATGA
1 GATCGATCCTTTGGTCAAAGA
4971245 GATCGATCCTTTG
1 GATCGATCCTTTG
4971258 AGCTAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (21 bp):
GATCGATCCTTTGGTCAAAGA
Found at i:4979909 original size:2 final size:2
Alignment explanation
Indices: 4979902--4979948 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
4979892 CAAAGCCCAA
*
4979902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4979943 AT AT AT
1 AT AT AT
4979949 GTTATTATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:4981726 original size:55 final size:55
Alignment explanation
Indices: 4981606--4981819 Score: 272
Period size: 55 Copynumber: 3.9 Consensus size: 55
4981596 TATACAACAG
* * * * *
4981606 TTCATCATCTCATGATGAATTCTGTGGGTTT-CACATATCGTGCTTGTA-GGATTA
1 TTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCCTGTACGG-TTA
* * *
4981660 TTCATCAAACTCATGATGAATT-TCGTGGATTTGCACACATAATGCATGTACGGTAA
1 TTCATC-AACTCATGATGAATTCT-GTGGATTTGCACACATAGTGCCTGTACGGTTA
* * *
4981716 TTCATCAACTCATGATGAATTCCGTGGATTTGCACATATAGTGCCTGTACCGTTA
1 TTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCCTGTACGGTTA
*
4981771 TTCATCAACTCATGATGAATTCTGTGGATTTACACACATAGTGCCTGTA
1 TTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCCTGTA
4981820 GTACACTTAG
Statistics
Matches: 139, Mismatches: 16, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
54 7 0.05
55 109 0.78
56 21 0.15
57 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (55 bp):
TTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCCTGTACGGTTA
Found at i:4984274 original size:7 final size:7
Alignment explanation
Indices: 4984252--4984291 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
4984242 GTCAAAGGAA
4984252 GTCAACG
1 GTCAACG
*
4984259 GTC-ATG
1 GTCAACG
4984265 GTCAACG
1 GTCAACG
4984272 GTCAACG
1 GTCAACG
4984279 GTCAACG
1 GTCAACG
*
4984286 ATCAAC
1 GTCAAC
4984292 AGTCGGGTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:4984347 original size:29 final size:28
Alignment explanation
Indices: 4984315--4984375 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
4984305 CGGGTCAGAT
* * *
4984315 CGGTCAAACCAGTTCGAATCGGTCAAAAC
1 CGGTCAAACCAGTTAGAACCGATC-AAAC
* *
4984344 CGGTCTAACCGGTTAGAACCGATCAAAC
1 CGGTCAAACCAGTTAGAACCGATCAAAC
4984372 CGGT
1 CGGT
4984376 TTCCAGCCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.31, C:0.28, G:0.23, T:0.18
Consensus pattern (28 bp):
CGGTCAAACCAGTTAGAACCGATCAAAC
Found at i:4991470 original size:19 final size:19
Alignment explanation
Indices: 4991446--4991524 Score: 88
Period size: 19 Copynumber: 4.1 Consensus size: 19
4991436 TCGGGTAGGG
4991446 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
4991465 TCAGACCGGTCAAATCGGT
1 TCAGACCGGTCAAACCGGT
*
4991484 TC-GAACCGGCCAGAACCGGT
1 TCAG-ACCGGTCA-AACCGGT
* *
4991504 TGAAAACCGGTCAAACCGGT
1 T-CAGACCGGTCAAACCGGT
4991524 T
1 T
4991525 TCCAGCCCTC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
18 1 0.02
19 27 0.54
20 15 0.30
21 7 0.14
ACGTcount: A:0.28, C:0.29, G:0.27, T:0.16
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:4991483 original size:9 final size:9
Alignment explanation
Indices: 4991444--4991523 Score: 61
Period size: 9 Copynumber: 8.3 Consensus size: 9
4991434 AGTCGGGTAG
*
4991444 GGTCAGACC
1 GGTCAAACC
4991453 GGTCAAACC
1 GGTCAAACC
*
4991462 GGTTCAGACC
1 GG-TCAAACC
*
4991472 GGTCAAATC
1 GGTCAAACC
*
4991481 GGTTCGAACC
1 GG-TCAAACC
*
4991491 GGCCAGAACC
1 GGTCA-AACC
*
4991501 GGTTGAAAACC
1 GG-T-CAAACC
4991512 GGTCAAACC
1 GGTCAAACC
4991521 GGT
1 GGT
4991524 TTCCAGCCCT
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
9 26 0.47
10 22 0.40
11 6 0.11
12 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.29, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:4995509 original size:54 final size:55
Alignment explanation
Indices: 4995451--4995719 Score: 301
Period size: 54 Copynumber: 4.9 Consensus size: 55
4995441 TATATGGTAG
* * *
4995451 TTCATCAACTCATGATGAATTCCGTGG-GTTGCACATATCGTGCTTGTATGACTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATATAGTGCTTGTACGATTA
* * * * * * *
4995505 TTCATCAACTTATGATGAATTCCATGGATTTGCACACATAGTGCCTATACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATATAGTGCTTGTACGATTA
* * * *
4995560 TTTATCAGCTCATGATGAATTCCGTGGAGTTGTACACATAGT-GTGCATGTACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTG--CACATA-TAGTGCTTGTACGATTA
*
4995617 TTCATCAACTCATGATGACTTCCGTGGA-TTGCACATATAGTGCTTGTACGATTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATATAGTGCTTGTACGATTA
* * * * * *
4995671 TTCATCAACTCGTAATGAATTACGTGGATTTGCACACATAGTGCCTGTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATATAGTGCTTGTA
4995720 GTACACTTAG
Statistics
Matches: 180, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 68 0.38
55 64 0.36
56 3 0.02
57 43 0.24
58 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (55 bp):
TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATATAGTGCTTGTACGATTA
Found at i:4995581 original size:109 final size:109
Alignment explanation
Indices: 4995426--4995706 Score: 316
Period size: 109 Copynumber: 2.6 Consensus size: 109
4995416 TTTATTAAGA
* * *
4995426 TGCACACGTAGTCCCTATATGG-TAGTTCATCAACTCATGATGAATTCCGTGG-GTTGCACATA-
1 TGCACACATAGTGCCTATACGGTTA-TTCATCAACTCATGATGAATTCCGTGGAGTTGCACATAG
* * *
4995488 TCGTGCTTGTATGACTATTCATCAACTTATGATGAATTCCATGGATT
65 T-GTGCATGTACGACTATTCATCAACTCATGATGAATTCCATGGA-T
* *
4995535 TGCACACATAGTGCCTATACGGTTATTTATCAGCTCATGATGAATTCCGTGGAGTTGTACACATA
1 TGCACACATAGTGCCTATACGGTTATTCATCAACTCATGATGAATTCCGTGGAGTTG--CACATA
** * *
4995600 GTGTGCATGTACGGTTATTCATCAACTCATGATGACTTCCGTGGAT
64 GTGTGCATGTACGACTATTCATCAACTCATGATGAATTCCATGGAT
* * * * * * * *
4995646 TGCACATATAGTGCTTGTACGATTATTCATCAACTCGTAATGAATTACGTGGATTTGCACA
1 TGCACACATAGTGCCTATACGGTTATTCATCAACTCATGATGAATTCCGTGGAGTTGCACA
4995707 CATAGTGCCT
Statistics
Matches: 145, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
109 48 0.33
110 6 0.04
111 48 0.33
112 42 0.29
113 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (109 bp):
TGCACACATAGTGCCTATACGGTTATTCATCAACTCATGATGAATTCCGTGGAGTTGCACATAGT
GTGCATGTACGACTATTCATCAACTCATGATGAATTCCATGGAT
Found at i:5001131 original size:55 final size:54
Alignment explanation
Indices: 5000986--5001333 Score: 360
Period size: 55 Copynumber: 6.4 Consensus size: 54
5000976 TTTATTAAGA
* * * * *
5000986 TGCACACGTAGTGCCTATACGG-TAGTTCATCAACTCATAATGAATTCCATGG-GT
1 TGCACACATAGTGCCTGTACGGTTA-TTCATCAACTCATGATGAATT-CGTGGATT
* * * * **
5001040 TGAAAATATCGTGCCTGTACGGTTATTCATCAACTCATGATGAATTC-TATATTTT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCGTGGA--TT
* * * *
5001095 TCCCCACATAGTGCGTGTATGGTTATTCATCAACTCATGATGAATTACGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATT-CGTGGATT
* * *
5001150 TGCACACATAGTGTCTATACGGTTATTCATCAACTCATGATGAATTATGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATT-CGTGGATT
* * * * *
5001205 TGTACACATAGTGCTTGTACAGTTATTCATGAACTCATGATAAATTTCGTGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAA-TTCGTGGATT
* *
5001260 TGCACACATAGTGCCTGTATGGTTATTCATCAACTCATGATGAATTCCATGGATT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATT-CGTGGATT
* *
5001315 TTCGCACATAGTGCCTGTA
1 TGCACACATAGTGCCTGTA
5001334 GTACACTTAA
Statistics
Matches: 242, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
52 1 0.00
53 1 0.00
54 38 0.16
55 197 0.81
56 3 0.01
57 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCGTGGATT
Found at i:5001281 original size:165 final size:162
Alignment explanation
Indices: 5000986--5001330 Score: 417
Period size: 165 Copynumber: 2.1 Consensus size: 162
5000976 TTTATTAAGA
* * *
5000986 TGCACACGTAGTGCCTATACGGTAGTTCATCAACTCATAATGAATTCCATGGGTTGAAAATATCG
1 TGCACACATAGTGCCTATACGGTAGTTCATCAACTCATAATGAATT-CATGGGTTGAAAACATAG
* * * * *
5001051 TGCCTGTACGGTTATTCATCAACTCATGATGAATTCTATATTTTTCCCCACATAGTGCGTGTATG
65 TGCCTGTACAGTTATTCATCAACTCATGATAAATTCTAGA-TTTTCCACACATAGTGCCTGTATG
*
5001116 GTTATTCATCAACTCATGATGAATTACGTGGATT
129 GTTATTCATCAACTCATGATGAATTACATGGATT
* * * *
5001150 TGCACACATAGTGTCTATACGGTTA-TTCATCAACTCATGATGAATT-ATGTGGATTTGTACACA
1 TGCACACATAGTGCCTATACGG-TAGTTCATCAACTCATAATGAATTCATG-GG--TTGAAAACA
* * * *
5001213 TAGTGCTTGTACAGTTATTCATGAACTCATGATAAATTTCGTGGA-TTTGCACACATAGTGCCTG
62 TAGTGCCTGTACAGTTATTCATCAACTCATGATAAA-TTC-TAGATTTTCCACACATAGTGCCTG
*
5001277 TATGGTTATTCATCAACTCATGATGAATTCCATGGATT
125 TATGGTTATTCATCAACTCATGATGAATTACATGGATT
* *
5001315 TTCGCACATAGTGCCT
1 TGCACACATAGTGCCT
5001331 GTAGTACACT
Statistics
Matches: 154, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
162 3 0.02
163 2 0.01
164 40 0.26
165 104 0.68
166 3 0.02
167 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (162 bp):
TGCACACATAGTGCCTATACGGTAGTTCATCAACTCATAATGAATTCATGGGTTGAAAACATAGT
GCCTGTACAGTTATTCATCAACTCATGATAAATTCTAGATTTTCCACACATAGTGCCTGTATGGT
TATTCATCAACTCATGATGAATTACATGGATT
Found at i:5003127 original size:22 final size:22
Alignment explanation
Indices: 5003088--5003142 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
5003078 CAGAGGGAAT
*
5003088 CGATTCTCCCC-AAGGGGGTAC
1 CGATTCCCCCCTAAGGGGGTAC
5003109 CGATTCCCCCCTAAGGGGGTAC
1 CGATTCCCCCCTAAGGGGGTAC
5003131 CGATTCCCCCCT
1 CGATTCCCCCCT
5003143 TAACGGTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 10 0.31
22 22 0.69
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (22 bp):
CGATTCCCCCCTAAGGGGGTAC
Found at i:5008998 original size:20 final size:20
Alignment explanation
Indices: 5008973--5009010 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5008963 TTTTGGTGTA
5008973 GAGGGAATCGATACCCCCAT
1 GAGGGAATCGATACCCCCAT
*
5008993 GAGGGAATCGATTCCCCC
1 GAGGGAATCGATACCCCC
5009011 TTTGAAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (20 bp):
GAGGGAATCGATACCCCCAT
Found at i:5011691 original size:21 final size:21
Alignment explanation
Indices: 5011667--5011720 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
5011657 CTCAGAGGGA
5011667 ACCGATTTCCCCCAAGGGGGT
1 ACCGATTTCCCCCAAGGGGGT
*
5011688 ACCGATTCCCCCCAAGGGGGT
1 ACCGATTTCCCCCAAGGGGGT
5011709 ACCGA-TTCCCCC
1 ACCGATTTCCCCC
5011721 TTAATGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.19, C:0.41, G:0.24, T:0.17
Consensus pattern (21 bp):
ACCGATTTCCCCCAAGGGGGT
Found at i:5012557 original size:20 final size:20
Alignment explanation
Indices: 5012528--5012566 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
5012518 TATGGGTTAG
5012528 AATATCGATATTGGATGAAC
1 AATATCGATATTGGATGAAC
*
5012548 AATATTGATATTGGATGAA
1 AATATCGATATTGGATGAA
5012567 TTGGATCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (20 bp):
AATATCGATATTGGATGAAC
Found at i:5017333 original size:92 final size:92
Alignment explanation
Indices: 5017166--5017341 Score: 244
Period size: 92 Copynumber: 1.9 Consensus size: 92
5017156 TATTAAAAGG
* **
5017166 GATCGATCATTTTTCAAACATTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAATTGAT
1 GATCGATCATTTTTCAAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
*
5017231 CGATCATAAACTCACTGTTTTCCAATA
66 CAATCATAAACTCACTGTTTTCCAATA
* ** * * * *
5017258 GATCGATCGTTTTTTGAACACTTTGACCGTTTTAACAAAGGTATTAATCCTTTAAGGGAAGGGAT
1 GATCGATCATTTTTCAAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
*
5017323 CAATCCTAAACTCACTGTT
66 CAATCATAAACTCACTGTT
5017342 GTTTAATGGA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (92 bp):
GATCGATCATTTTTCAAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
CAATCATAAACTCACTGTTTTCCAATA
Found at i:5017363 original size:92 final size:92
Alignment explanation
Indices: 5017166--5017363 Score: 236
Period size: 92 Copynumber: 2.2 Consensus size: 92
5017156 TATTAAAAGG
* ** * **
5017166 GATCGATCATTTTTCAAACATTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAATTGAT
1 GATCGATCCTTTTTTGAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
*
5017231 CGATCATAAACTCACTGTTTTCCAATA
66 CAATCATAAACTCACTGTTTTCCAATA
* * * * *
5017258 GATCGATCGTTTTTTGAACACTTTGACCGTTTTAACAAAGGTATTAATCCTTTAAGGGAAGGGAT
1 GATCGATCCTTTTTTGAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
* * *
5017323 CAATCCTAAACTCACTGTTGTT-TAATG
66 CAATCATAAACTCACTGTT-TTCCAATA
*
5017350 GATTGATCCTTTTT
1 GATCGATCCTTTTT
5017364 AAAGGGGATC
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
92 87 0.98
93 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (92 bp):
GATCGATCCTTTTTTGAACACTTTGACCGTTGTAACAAAGGGATCAATCATTTAAGGGAAGGGAT
CAATCATAAACTCACTGTTTTCCAATA
Found at i:5034295 original size:2 final size:2
Alignment explanation
Indices: 5034284--5034338 Score: 89
Period size: 2 Copynumber: 29.0 Consensus size: 2
5034274 TTTGTCAATT
5034284 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5034323 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
5034339 ATTTACAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 3 0.06
2 47 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5034513 original size:13 final size:13
Alignment explanation
Indices: 5034495--5034546 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
5034485 AATGACGCTC
5034495 AATGCGCATCATA
1 AATGCGCATCATA
*
5034508 AATGCGCGTCATA
1 AATGCGCATCATA
** *
5034521 AATGCGTGTCATC
1 AATGCGCATCATA
*
5034534 AATGAGCATCATA
1 AATGCGCATCATA
5034547 GATTTATGAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (13 bp):
AATGCGCATCATA
Found at i:5046551 original size:20 final size:20
Alignment explanation
Indices: 5046526--5046563 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
5046516 AACTTGAGAA
5046526 AATAAAGTAGGTGAAATAGG
1 AATAAAGTAGGTGAAATAGG
5046546 AATAAAGTAGGTGAAATA
1 AATAAAGTAGGTGAAATA
5046564 AGACGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (20 bp):
AATAAAGTAGGTGAAATAGG
Found at i:5058497 original size:17 final size:17
Alignment explanation
Indices: 5058472--5058504 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5058462 GAACAAGTTC
*
5058472 TTCTGATTATGAACTTA
1 TTCTCATTATGAACTTA
5058489 TTCTCATTATGAACTT
1 TTCTCATTATGAACTT
5058505 TTTCCCTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.48
Consensus pattern (17 bp):
TTCTCATTATGAACTTA
Found at i:5058739 original size:80 final size:79
Alignment explanation
Indices: 5058626--5058774 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 79
5058616 CGAACCCTTC
* *
5058626 CATTAGAAATGTTGATTCACCTCCTTCTATGATGAAATCGAGTGAAATGTTGAACAAGTTCTTCT
1 CATTAGAAATGTTGATTCACCTCCTTCTATGATGAAATCGAG-CAAAGGTTGAACAAGTTCTTCT
5058691 CATTAGAAATTTCTT
65 CATTAGAAATTTCTT
* * * *
5058706 CATTGGAAATGTTG-TTCCACCTCCTTCTGTGATGGAATTGAGCAAAGGTTGAACAAGTTCTTCT
1 CATTAGAAATGTTGATT-CACCTCCTTCTATGATGAAATCGAGCAAAGGTTGAACAAGTTCTTCT
5058770 CATTA
65 CATTA
5058775 TGAACTTGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
79 27 0.44
80 35 0.56
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (79 bp):
CATTAGAAATGTTGATTCACCTCCTTCTATGATGAAATCGAGCAAAGGTTGAACAAGTTCTTCTC
ATTAGAAATTTCTT
Found at i:5058827 original size:198 final size:198
Alignment explanation
Indices: 5058489--5058950 Score: 640
Period size: 198 Copynumber: 2.3 Consensus size: 198
5058479 TATGAACTTA
* ** * * *
5058489 TTCTCATTATGAACTTT-TTCCCTGGAAATGTTGATCCACCTCCTTTTGCGATGGAATCGAACCA
1 TTCTCATTA-GAAATTTCTTCATTGGAAATGTTGATCCACCTCCTTCTGTGATGGAATCGAACAA
* *
5058553 AGGTTTAACAAGTTCTTATCATTATGAACTTCTTCTCCCTCATCAGATGAGTTCTTCTCATTACG
65 AGGTTGAACAAGTTCTTATCATTATGAACTTCTTCTCCCTCATCAGATGAGTTCTTCTCATTACA
* *
5058618 AACCCTTCCATTAGAAATGTTGATTCACCTCCTTCTATGATGAAATCGAGTGAAATGTTGAACAA
130 AACCCTTCCATTAGAAATGTTAATCCACCTCCTTCTATGATGAAATCGAGTGAAATGTTGAACAA
5058683 GTTC
195 GTTC
* * *
5058687 TTCTCATTAGAAATTTCTTCATTGGAAATGTTGTTCCACCTCCTTCTGTGATGGAATTGAGCAAA
1 TTCTCATTAGAAATTTCTTCATTGGAAATGTTGATCCACCTCCTTCTGTGATGGAATCGAACAAA
* *
5058752 GGTTGAACAAGTTCTTCTCATTATGAACTTGTTCTCCCTCATC-GAATGAGTTCTTCTCATTACA
66 GGTTGAACAAGTTCTTATCATTATGAACTTCTTCTCCCTCATCAG-ATGAGTTCTTCTCATTACA
* * * * * *
5058816 AACCCTTCCATTGGAAATGTTAATCCACCTCTTTCTGTGATGGAATCGAGTGAAATTTTGATCAA
130 AACCCTTCCATTAGAAATGTTAATCCACCTCCTTCTATGATGAAATCGAGTGAAATGTTGAACAA
5058881 GTTC
195 GTTC
* * ** * * *
5058885 TTCTCATTGGGAGCTTCTTCATTGGAAGTGTTGATCCACCTTCTTCTTTGATGGAATCGAACAAA
1 TTCTCATTAGAAATTTCTTCATTGGAAATGTTGATCCACCTCCTTCTGTGATGGAATCGAACAAA
5058950 G
66 G
5058951 TGAAGATGCC
Statistics
Matches: 231, Mismatches: 31, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
197 7 0.03
198 224 0.97
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (198 bp):
TTCTCATTAGAAATTTCTTCATTGGAAATGTTGATCCACCTCCTTCTGTGATGGAATCGAACAAA
GGTTGAACAAGTTCTTATCATTATGAACTTCTTCTCCCTCATCAGATGAGTTCTTCTCATTACAA
ACCCTTCCATTAGAAATGTTAATCCACCTCCTTCTATGATGAAATCGAGTGAAATGTTGAACAAG
TTC
Found at i:5060693 original size:54 final size:54
Alignment explanation
Indices: 5060608--5060994 Score: 416
Period size: 54 Copynumber: 7.1 Consensus size: 54
5060598 TTACAGTTTT
* * * * *
5060608 CATCAATAAACACCTAAATATTAGGCTTAGCTTCTTTAAAAATTCATTTGAAAA
1 CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
* * ** * *
5060662 CATCAAGAAACCCCTGAAACTCAGGCTTAGCTCCTTTCCAAATCCATTTGTAAA
1 CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
* * * *
5060716 CATCAATAAACCCCTGAAAATCAGTCTTAGCTCCTTTAAAAATTCATTTGAAAT
1 CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
* * ** * *
5060770 CATCAAGAAACCTCTAAAAATTTA-GCTTAGCTCCTTTCCAAATCCATTTGTAAA
1 CATCAAGAAACCCCTAAAAA-TCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
* * *
5060824 CATCAAGAAACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATTTATTTGAAAA
1 CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
* * * * *
5060878 CATCAAGAAACCCCTAAAAAAACATGTTTAGCTTCTTTTAAAATTCATTTGAATTAA
1 CATCAAGAAACCCCT-AAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAA--AA
* * * * *
5060935 TCATTAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTAAAAAATTCATTTGAAAG
1 -CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
5060990 CATCA
1 CATCA
5060995 TATTATTTGG
Statistics
Matches: 272, Mismatches: 55, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.01
54 191 0.70
55 32 0.12
57 33 0.12
58 14 0.05
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
CATCAAGAAACCCCTAAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAA
Found at i:5060746 original size:108 final size:108
Alignment explanation
Indices: 5060608--5060994 Score: 463
Period size: 108 Copynumber: 3.5 Consensus size: 108
5060598 TTACAGTTTT
* * * *
5060608 CATCAATAAACACCT-AAATATTAGGCTTAGCTTCTTTAAAAATTCATTTGAAAACATCAAGAAA
1 CATCAAGAAACCCCTGAAA-ATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAACATCAAGAAA
* *
5060672 CCCCT-GAAACTCAGGCTTAGCTCCTTTCCAAATCCATTTGTAAA
65 CCCCTAAAAAATCA-GCTTAGCTCCTTTCCAAATCCATTTGTAAA
* * *
5060716 CATCAATAAACCCCTGAAAATCAGTCTTAGCTCCTTTAAAAATTCATTTGAAATCATCAAGAAAC
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAACATCAAGAAAC
* * *
5060781 CTCTAAAAATTTAGCTTAGCTCCTTTCCAAATCCATTTGTAAA
66 CCCTAAAAAATCAGCTTAGCTCCTTTCCAAATCCATTTGTAAA
* *
5060824 CATCAAGAAACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATTTATTTGAAAACATCAAGAAAC
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAACATCAAGAAAC
* * * ** * *
5060889 CCCTAAAAAAACATGTTTAGCTTCTTTTAAAATTCATTTGAATTAAT
66 CCCTAAAAAATCA-GCTTAGCTCCTTTCCAAATCCATTTG---TAAA
* * * * * *
5060936 CATTAAGAAACCCCTAAAAATTAGGCTTAGCTTCTTAAAAAATTCATTTGAAAGCATCA
1 CATCAAGAAACCCCTGAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAACATCA
5060995 TATTATTTGG
Statistics
Matches: 241, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
108 158 0.66
109 29 0.12
112 54 0.22
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (108 bp):
CATCAAGAAACCCCTGAAAATCAGGCTTAGCTCCTTTAAAAATTCATTTGAAAACATCAAGAAAC
CCCTAAAAAATCAGCTTAGCTCCTTTCCAAATCCATTTGTAAA
Found at i:5060835 original size:162 final size:166
Alignment explanation
Indices: 5060607--5060994 Score: 475
Period size: 162 Copynumber: 2.4 Consensus size: 166
5060597 TTTACAGTTT
* * * * *
5060607 TCATCAATAAACACCTAAATA-TTAGGCTTAGCTTCTTTAAAAATTCATTTGAAAACATCAAGAA
1 TCATCAAGAAACCCCTAAAAATTTAGGCTTAGCTCCTTTAAAAATCCATTTGAAAACATCAAGAA
* * ** * * *
5060671 ACCCCTGAAACTCAGGCTTAGCTCCTTTCCAAATCCATTTGTAAACATCAATAAACCCCT-GAAA
66 ACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATCCATTTGAAAACATCAAGAAACCCCTAAAAA
*
5060735 ATCA-GTCTTAGCTCCTTTAAAAATTCATTTG-A-AA
131 AACATGT-TTAGCTCCTTTAAAAATTCATTTGAATAA
* ** *
5060769 TCATCAAGAAACCTCTAAAAATTTA-GCTTAGCTCCTTTCCAAATCCATTTGTAAACATCAAGAA
1 TCATCAAGAAACCCCTAAAAATTTAGGCTTAGCTCCTTTAAAAATCCATTTGAAAACATCAAGAA
**
5060833 ACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATTTATTTGAAAACATCAAGAAACCCCTAAAAA
66 ACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATCCATTTGAAAACATCAAGAAACCCCTAAAAA
* *
5060898 AACATGTTTAGCTTCTTTTAAAATTCATTTGAATTAA
131 AACATGTTTAGCTCCTTTAAAAATTCATTTGAA-TAA
* * * * *
5060935 TCATTAAGAAACCCCTAAAAA-TTAGGCTTAGCTTCTTAAAAAATTCATTTGAAAGCATCA
1 TCATCAAGAAACCCCTAAAAATTTAGGCTTAGCTCCTTTAAAAATCCATTTGAAAACATCA
5060995 TATTATTTGG
Statistics
Matches: 189, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
162 103 0.54
163 31 0.16
164 3 0.02
165 3 0.02
166 49 0.26
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (166 bp):
TCATCAAGAAACCCCTAAAAATTTAGGCTTAGCTCCTTTAAAAATCCATTTGAAAACATCAAGAA
ACCCCTGAAAATCAGGCTTAGATCCTTTAAAAATCCATTTGAAAACATCAAGAAACCCCTAAAAA
AACATGTTTAGCTCCTTTAAAAATTCATTTGAATAA
Found at i:5068735 original size:2 final size:2
Alignment explanation
Indices: 5068724--5068756 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
5068714 TAAATGTGAT
5068724 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5068757 CACACACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:5070959 original size:245 final size:247
Alignment explanation
Indices: 5070479--5071546 Score: 1175
Period size: 257 Copynumber: 4.2 Consensus size: 247
5070469 AAACTATTTC
* * * *
5070479 AGTAAGTCCTTCGGTCCATCAGTAAGTCTTTCGAGCGTGAT--TTAACTCCTT-TGAATCATCTG
1 AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCTG-GTCATCTG
* * *
5070541 TAAGTCTTTCGAGCAAGATAATAAGTCCTTCA-ACCAATCCGTAAGACCTTCGGGTAGGATATTT
65 TAAGTCTTTCGAGCAAGATGATAAGTCCTTCAGGCC-ATCCGTAAGACCTTCGGGTAGGATGTTT
* * ** * *
5070605 TCATATGAATTTGAAAAATGAGAAAGTGATTTCCAAAGTTTCTTGTTTAATATTTTCAGAAAATG
129 TCGTATGAATTTGAAAAATAAGAAAGCAATTTCCAAA-------G-TT--TATCTTCAAAAAATG
* *
5070670 AAATTTTTGAAAAGTCAGAAAGTAATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
184 AAATTTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
* * *
5070734 AGTAAGTTCTTCAGGCCATTAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCTGGTCAAT-TG
1 AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCTGGTC-ATCTG
* * ** * *
5070798 TAAGTCTTTCGAGTAAGGTGATAAGTTATTCAGGCCATCCGTAAAACCTTCAGGTAGGATGTTTT
65 TAAGTCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTT
* * * *
5070863 CGTATGAACTTGAAAAATAAGAAAGCGATTTCCAAAG-TT-TCTTCAGAAAATAAAATTTTTGAA
130 CGTATGAATTTGAAAAATAAGAAAGCAATTTCCAAAGTTTATCTTCAAAAAATGAAATTTTTGAA
* * *
5070926 AAGTAAGAAAGTGATTTCCAAATTTTCTTACCCAGTAAACTATTTCCCAAATT
195 AAGTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
* * *
5070979 GGTAAGTCCTTCGAGCCATCAGTAATTCTTTCGAGCATGATGATTAAATCC-TCTGGGTCATCTG
1 AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCT-GGTCATCTG
* * * * *
5071043 TAAGTTTTTTGAGCAATATGATAACTCCTTCAGGCCATCTGTAAGACCTTCGGGTAGGATGTTTT
65 TAAGTCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTT
*
5071108 CGTATGAATTTGAAAAATAAGAAAG-ATATTTCTAAAGTTTCTCGTTTAGTATCTTCAAAAAATG
130 CGTATGAATTTGAAAAATAAGAAAGCA-ATTTCCAAA-------G-TT--TATCTTCAAAAAATG
* *
5071172 AAATTTTTGAAAAGTAATAAAGCGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
184 AAATTTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
** * * *
5071236 AGTAACACCTTCGGGCCATCAGTAAGTCTTTTGAGCATGATGCTTAAATCCTT-TGGGCCATCTG
1 AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCT-GGTCATCTG
* * *
5071300 TAAGTCTTTCGAACAAGATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTGGGATGTTTT
65 TAAGTCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTT
* * * * * * *
5071365 CGCATTATTTTCAAAAAATGAGAATGCAATTTCCAAAGTTTCTCATTTAGTATTTTCAAAAAATG
130 CGTATGAATTT-GAAAAATAAGAAAGCAATTTCCAAAG--------TT--TATCTTCAAAAAATG
*
5071430 AAATTTTTGAAAAGTAAGAAAGTGACTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
184 AAATTTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
* * * *
5071494 GGTAAGTCTTTCGGGCCATCAGTAAGTCTTTTGAGCCTGATGATTAAATCCTT
1 AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTT
5071547 TGGGTTATCT
Statistics
Matches: 696, Mismatches: 87, Indels: 57
0.83 0.10 0.07
Matches are distributed among these distances:
244 5 0.01
245 207 0.30
246 1 0.00
248 1 0.00
250 1 0.00
251 1 0.00
252 1 0.00
254 1 0.00
255 36 0.05
256 1 0.00
257 287 0.41
258 153 0.22
259 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (247 bp):
AGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCTGGTCATCTGT
AAGTCTTTCGAGCAAGATGATAAGTCCTTCAGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTC
GTATGAATTTGAAAAATAAGAAAGCAATTTCCAAAGTTTATCTTCAAAAAATGAAATTTTTGAAA
AGTAAGAAAGTGATTTCCAAAGTTTCTTACCCAGTAAATTATTTCCAAAATT
Found at i:5071344 original size:41 final size:42
Alignment explanation
Indices: 5071243--5071344 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 42
5071233 ATTAGTAACA
* * * *
5071243 CCTTCGGGCCATCAGTAAGTCTTTTGAGCATGATGCTTAAAT
1 CCTTCGGGCCATCAGTAAGTCTTTCGAACAAGATGCATAAAT
* * *
5071285 CCTTTGGGCCATCTGTAAGTCTTTCGAACAAGATG-ATAAGT
1 CCTTCGGGCCATCAGTAAGTCTTTCGAACAAGATGCATAAAT
*
5071326 CCTTCGGGCCATCCGTAAG
1 CCTTCGGGCCATCAGTAAG
5071345 ACCTTCGGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
41 21 0.41
42 30 0.59
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (42 bp):
CCTTCGGGCCATCAGTAAGTCTTTCGAACAAGATGCATAAAT
Found at i:5071714 original size:3 final size:3
Alignment explanation
Indices: 5071708--5071748 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
5071698 AATTTAATAA
*
5071708 TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TATT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT T
5071749 TTTTATAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:5074258 original size:17 final size:17
Alignment explanation
Indices: 5074238--5074271 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5074228 TCTCTCTCTA
*
5074238 TTTTTTATTTTTTTTCT
1 TTTTTTATTTCTTTTCT
*
5074255 TTTTTTCTTTCTTTTCT
1 TTTTTTATTTCTTTTCT
5074272 CTATTATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTATTTCTTTTCT
Found at i:5074281 original size:20 final size:20
Alignment explanation
Indices: 5074220--5074289 Score: 76
Period size: 19 Copynumber: 3.7 Consensus size: 20
5074210 TCTTGAAGTA
*
5074220 TTTTTCTTTC-TCTCTCTAT
1 TTTTTCTTTCTTTTCTCTAT
*
5074239 TTTTTATTT-TTTT-TCT-T
1 TTTTTCTTTCTTTTCTCTAT
5074256 TTTTTCTTTCTTTTCTCTAT
1 TTTTTCTTTCTTTTCTCTAT
* *
5074276 TATTTCTTCCTTTT
1 TTTTTCTTTCTTTT
5074290 ATCTCTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
17 9 0.21
18 7 0.17
19 13 0.31
20 13 0.31
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTCTTTCTTTTCTCTAT
Found at i:5074334 original size:20 final size:20
Alignment explanation
Indices: 5074297--5074334 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
5074287 TTTATCTCTT
*
5074297 TTATATTTTTCTTCTTTTTA
1 TTATATTTCTCTTCTTTTTA
5074317 TTATATATTCTCTT-TTTT
1 TTATAT-TTCTCTTCTTTT
5074335 CTCTCTGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.74
Consensus pattern (20 bp):
TTATATTTCTCTTCTTTTTA
Found at i:5075762 original size:22 final size:21
Alignment explanation
Indices: 5075737--5075800 Score: 60
Period size: 20 Copynumber: 3.0 Consensus size: 21
5075727 AGACACACAT
5075737 GTAAATATGTAAAGATGCGAAA
1 GTAAA-ATGTAAAGATGCGAAA
* *
5075759 GT-AAATGTAAAGATGTGAAT
1 GTAAAATGTAAAGATGCGAAA
* *
5075779 GCAAAGATGTAAAAATGC-AAA
1 GTAAA-ATGTAAAGATGCGAAA
5075800 G
1 G
5075801 ATGAGAGTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
20 15 0.44
21 7 0.21
22 12 0.35
ACGTcount: A:0.50, C:0.05, G:0.23, T:0.22
Consensus pattern (21 bp):
GTAAAATGTAAAGATGCGAAA
Found at i:5078264 original size:319 final size:310
Alignment explanation
Indices: 5077685--5078305 Score: 985
Period size: 319 Copynumber: 2.0 Consensus size: 310
5077675 AAGGTTTAGA
*
5077685 CCTAAAAATGGAGTGTCTAATATTAACCCTGATTGATTTTAACCAATTATTTAGTCGAATAATCG
1 CCTAAAAATGGAGTGTCTAATATTAACCCTGACTGATTTTAACCAATTATTTAGTCGAATAATCG
* *
5077750 AACTAGTCCTCCGAACATATTAAATACGGAAGCCAATACATATTATTTCCTAATTTTAAAGGACT
66 AACTAGTCCTCCGAACATATTAAATACGGAAGCCAATACAGATTATTTACTAATTTTAAAGGACT
* * *
5077815 AAAGTGAAATTAAACTTAAAGTGGAGGCTCTAATTAACCTAATTAATCATGTCAAATAAATATCT
131 AAAGTGAAATTAAACATAAAATGGAGACTCTAATTAACCTAATTAATCATGTCAAATAAATATCT
* * *
5077880 AATTAAATAGTTCAAGGACTAAAGTGTGAAAAATCTAAATCTAAAGGCTCGATTTACAACTAAAT
196 AATTAAAAAGTTCAAGGACTAAAGTGTGAAAAATCTAAATCTAAAGGCTCGATGTAAAACT-AA-
5077945 AGTTAATTCTATACTAAACTACAAAGCATGTAAAATTACCAACAAAATAATCGACTAGT
259 A--T-A----ATACTAAACTACAAAGCATGTAAAATTACCAACAAAATAATCGACTAGT
5078004 CCTAAAAATGGAGTGTCTAATATTAACCCTGACTGATTTTAACCAATTATTTAGTCGAATAATCG
1 CCTAAAAATGGAGTGTCTAATATTAACCCTGACTGATTTTAACCAATTATTTAGTCGAATAATCG
* *
5078069 AAGTAGTCCTCC-AAGCATATTAAATACTGAAGCCAATACAGATTATTTACTAATTTTAAAGGAC
66 AACTAGTCCTCCGAA-CATATTAAATACGGAAGCCAATACAGATTATTTACTAATTTTAAAGGAC
* * * * *
5078133 TGAGGTGAAATTGAACATAAAATGGAGACTCTAATTAACTTAATTAATCGTGTCAAATAAATATC
130 TAAAGTGAAATTAAACATAAAATGGAGACTCTAATTAACCTAATTAATCATGTCAAATAAATATC
5078198 TAATTAAAAAGTTCAAGGACTAAAGTGTGAAAAATCTAAATCTAAAGGCTC-AGTGTAAAACTAA
195 TAATTAAAAAGTTCAAGGACTAAAGTGTGAAAAATCTAAATCTAAAGGCTCGA-TGTAAAACTAA
5078262 ATAATACTAAACTACAAAGCATGTAAAATTACCAACAAAATAAT
259 ATAATACTAAACTACAAAGCATGTAAAATTACCAACAAAATAAT
5078306 AATAGCAGTA
Statistics
Matches: 284, Mismatches: 16, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
310 41 0.14
314 1 0.00
315 1 0.00
317 1 0.00
318 5 0.02
319 235 0.83
ACGTcount: A:0.43, C:0.15, G:0.12, T:0.30
Consensus pattern (310 bp):
CCTAAAAATGGAGTGTCTAATATTAACCCTGACTGATTTTAACCAATTATTTAGTCGAATAATCG
AACTAGTCCTCCGAACATATTAAATACGGAAGCCAATACAGATTATTTACTAATTTTAAAGGACT
AAAGTGAAATTAAACATAAAATGGAGACTCTAATTAACCTAATTAATCATGTCAAATAAATATCT
AATTAAAAAGTTCAAGGACTAAAGTGTGAAAAATCTAAATCTAAAGGCTCGATGTAAAACTAAAT
AATACTAAACTACAAAGCATGTAAAATTACCAACAAAATAATCGACTAGT
Found at i:5081386 original size:20 final size:20
Alignment explanation
Indices: 5081327--5081392 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
5081317 TAGGTTAGGG
* *
5081327 TATCGATACTGGATGAGCAG
1 TATCGATACTGGATGAACAA
*
5081347 TATTGATACTGGATGAACAA
1 TATCGATACTGGATGAACAA
*
5081367 TATCGATACTAGATGAACAA
1 TATCGATACTGGATGAACAA
*
5081387 GATCGA
1 TATCGA
5081393 ATTTTGGGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (20 bp):
TATCGATACTGGATGAACAA
Done.