Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009624.1 Hibiscus syriacus cultivar Beakdansim tig00117016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8249038
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 26 of 38
Found at i:5084964 original size:19 final size:20
Alignment explanation
Indices: 5084937--5084974 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
5084927 GAGGGCAACC
5084937 AAAAAAATTATAAT-TTATT
1 AAAAAAATTATAATATTATT
* *
5084956 AAAATAATTTTAATATTAT
1 AAAAAAATTATAATATTAT
5084975 ATTTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAAAAATTATAATATTATT
Found at i:5084986 original size:27 final size:27
Alignment explanation
Indices: 5084943--5084996 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
5084933 AACCAAAAAA
* *
5084943 ATTATAATTTATTAAAATAATTTTAAT
1 ATTATAATTTATTAAAAAAATTATAAT
*
5084970 ATTAT-ATTTTTTAAAAAAAATTATAAT
1 ATTATAATTTATT-AAAAAAATTATAAT
5084997 CAAATTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
ATTATAATTTATTAAAAAAATTATAAT
Found at i:5085669 original size:91 final size:96
Alignment explanation
Indices: 5085496--5085762 Score: 278
Period size: 91 Copynumber: 2.8 Consensus size: 96
5085486 AAATAATTCT
* * * *
5085496 ATATTTTATAATTTATTGTAATATTATAATATTTATATTGTATTCAATCCCTCAAAAATTGATAT
1 ATATTTTATAATTTATTATAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTT
*
5085561 GAA-CAAAAATGACCCC-T-T-TTCT-TT-A
66 AAATCAAAAATGACCCCTTATATTCTGTTAA
* * * * * * *
5085586 ATAATTTTTTAATTTATTCTAATATTATTATATTTACATTTTATTTAGTTCCTCAAAAATTAATT
1 AT-ATTTTATAATTTATTATAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATT
** * * *
5085651 TAAATTGAAATTTA-CCCTTATATTTTGTTAA
65 TAAATCAAAAATGACCCCTTATATTCTGTTAA
* * *
5085682 ATATTATATAATTTATTAAAAATATTATAATATTTATATTGTATTCAGTCCCTTAAAAATTAATT
1 ATATTTTATAATTTATT-ATAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATT
*
5085747 TAAATCAAAATTGACC
65 TAAATCAAAAATGACC
5085763 TCTAATGTTG
Statistics
Matches: 139, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
90 2 0.01
91 58 0.42
92 6 0.04
93 1 0.01
94 3 0.02
95 15 0.11
96 53 0.38
97 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (96 bp):
ATATTTTATAATTTATTATAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTT
AAATCAAAAATGACCCCTTATATTCTGTTAA
Found at i:5085806 original size:96 final size:91
Alignment explanation
Indices: 5085499--5085811 Score: 247
Period size: 96 Copynumber: 3.3 Consensus size: 91
5085489 TAATTCTATA
* * * * *
5085499 TTTTATAATTTATTGTAATATTATAATATTTATATTGTATTCAATCCCTCAAAAATTGATATGAA
1 TTTTA-AATTT-TTTTAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTTAAA
* *
5085564 -CAAAAATGACCCCT--TTTCTTTAATAAT
64 TCAAAATTGA-CCCTAATTTGTTTAAT-AT
* * * * * * *
5085591 TTTTTAATTTATTCTAATATTATTATATTTACATTTTATTTAGTTCCTCAAAAATTAATTTAAAT
1 TTTTAAATTT-TTTTAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTTAAAT
** * *
5085656 TGAAATTTACCCTTATATTTTGTTAAATA-
65 CAAAATTGACCC-TA-A-TTTGTTTAATAT
* ** *
5085685 TTATATAATTTATTAAAAATATTATAATATTTATATTGTATTCAGTCCCTTAAAAATTAATTTAA
1 TTTTA-AATTT-TT-TTAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTTAA
*
5085750 ATCAAAATTGACCTCTAATGTTGTTTACTAT
63 ATCAAAATTGACC-CTAAT-TTGTTTAATAT
5085781 TTTTAAATTTTTTTATTATATTTATAATATT
1 TTTTAAATTTTTTTA--ATA-TTATAATATT
5085812 ATAATATATT
Statistics
Matches: 172, Mismatches: 35, Indels: 24
0.74 0.15 0.10
Matches are distributed among these distances:
91 52 0.30
92 10 0.06
93 1 0.01
94 6 0.03
95 26 0.15
96 76 0.44
97 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (91 bp):
TTTTAAATTTTTTTAATATTATAATATTTATATTGTATTCAGTCCCTCAAAAATTAATTTAAATC
AAAATTGACCCTAATTTGTTTAATAT
Found at i:5085898 original size:17 final size:17
Alignment explanation
Indices: 5085876--5085910 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
5085866 CTATATTATT
5085876 TAATATTATAATATTTA
1 TAATATTATAATATTTA
5085893 TAATATTATAATATTTA
1 TAATATTATAATATTTA
5085910 T
1 T
5085911 GTTGTATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAATATTATAATATTTA
Found at i:5085910 original size:9 final size:8
Alignment explanation
Indices: 5085867--5085907 Score: 57
Period size: 8 Copynumber: 5.1 Consensus size: 8
5085857 AACTGACCCC
*
5085867 TATATTAT
1 TATAATAT
5085875 T-TAATAT
1 TATAATAT
5085882 TATAATATT
1 TATAATA-T
5085891 TATAATAT
1 TATAATAT
5085899 TATAATAT
1 TATAATAT
5085907 T
1 T
5085908 TATGTTGTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 6 0.20
8 16 0.53
9 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TATAATAT
Found at i:5086118 original size:16 final size:16
Alignment explanation
Indices: 5086097--5086127 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5086087 CAGTCCCTTA
5086097 AAAATTAATTTAAACC
1 AAAATTAATTTAAACC
*
5086113 AAAATTAGTTTAAAC
1 AAAATTAATTTAAAC
5086128 TCACGTCAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.03, T:0.32
Consensus pattern (16 bp):
AAAATTAATTTAAACC
Found at i:5087769 original size:3 final size:3
Alignment explanation
Indices: 5087763--5087806 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
5087753 AATAATAATA
5087763 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
5087807 CTACCCTACC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:5087834 original size:17 final size:17
Alignment explanation
Indices: 5087812--5087844 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5087802 ATTATCTACC
*
5087812 CTACCCACTATCCACCA
1 CTACCCACTAACCACCA
5087829 CTACCCACTAACCACC
1 CTACCCACTAACCACC
5087845 TAATCCACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.55, G:0.00, T:0.15
Consensus pattern (17 bp):
CTACCCACTAACCACCA
Found at i:5087857 original size:19 final size:19
Alignment explanation
Indices: 5087833--5087890 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
5087823 CCACCACTAC
5087833 CCACTAACCACCTAATCCA
1 CCACTAACCACCTAATCCA
*
5087852 CCACTACCCA-CTAA-CCA
1 CCACTAACCACCTAATCCA
5087869 -CA-TAATCCATCCTAATCCA
1 CCACTAA-CCA-CCTAATCCA
5087888 CCA
1 CCA
5087891 TCATCATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 2 0.06
16 5 0.16
17 3 0.09
18 8 0.25
19 12 0.38
20 2 0.06
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.17
Consensus pattern (19 bp):
CCACTAACCACCTAATCCA
Found at i:5087888 original size:26 final size:26
Alignment explanation
Indices: 5087821--5087877 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
5087811 CCTACCCACT
*
5087821 ATCCACCACTACCCACTAACCACCTA
1 ATCCACCACTACCCACTAACCACATA
5087847 ATCCACCACTACCCACTAACCACATA
1 ATCCACCACTACCCACTAACCACATA
5087873 ATCCA
1 ATCCA
5087878 TCCTAATCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (26 bp):
ATCCACCACTACCCACTAACCACATA
Found at i:5091795 original size:15 final size:15
Alignment explanation
Indices: 5091741--5091812 Score: 51
Period size: 15 Copynumber: 4.8 Consensus size: 15
5091731 AAGATCAAAT
*
5091741 CAAAGCAGAAAGAAAAA
1 CAAAG-AGAAA-AGAAA
*
5091758 CAAAGA-ACAAA-AAT
1 CAAAGAGA-AAAGAAA
* *
5091772 CAAAAAGAAAAGAAG
1 CAAAGAGAAAAGAAA
*
5091787 CAAAGAGAAAATAAA
1 CAAAGAGAAAAGAAA
5091802 CAAAGA-AAAAG
1 CAAAGAGAAAAG
5091813 GGAAAAGAAG
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
14 14 0.31
15 23 0.51
16 3 0.07
17 5 0.11
ACGTcount: A:0.72, C:0.10, G:0.15, T:0.03
Consensus pattern (15 bp):
CAAAGAGAAAAGAAA
Found at i:5092888 original size:32 final size:32
Alignment explanation
Indices: 5092812--5092900 Score: 133
Period size: 32 Copynumber: 2.8 Consensus size: 32
5092802 AGGAATAATG
* * *
5092812 GGGGCATCTTTGAAGATTAAACATCAAATGTT
1 GGGGCATCTTTGGAGATTCAACATCAAATATT
*
5092844 GGGGCATCTTTGGAGATTCAACATCGAATATT
1 GGGGCATCTTTGGAGATTCAACATCAAATATT
*
5092876 GGGGCATCTTTGGGGATTCAACATC
1 GGGGCATCTTTGGAGATTCAACATC
5092901 CTGATGTGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (32 bp):
GGGGCATCTTTGGAGATTCAACATCAAATATT
Found at i:5094173 original size:85 final size:82
Alignment explanation
Indices: 5094003--5094258 Score: 293
Period size: 85 Copynumber: 3.0 Consensus size: 82
5093993 ATCTCCCAAC
* *
5094003 CAAATTTACAGCATAGCTCAAGGT-GAGAAGGGTTATCTATAAAAAAAACCTTCGAGTTCGATTC
1 CAAATTAACAGCATAGCTCAA-GTCGAGAAGGGTTATCT-TTAAAAAAACCTTCGAGTTCGATTC
5094067 CATTACACTCAAAGGCATAT
64 CATT-CACTCAAAGGCATAT
* *
5094087 CAAATTAACAGCATAGCTCAAGTCGATAAGGGTTATCTGTTAACAAAATCCTTCGAGTTCGATTC
1 CAAATTAACAGCATAGCTCAAGTCGAGAAGGGTTATCT-TTAA-AAAAACCTTCGAGTTCGATTC
*
5094152 CATTCATCTCAAAGGCGTAT
64 CATTCA-CTCAAAGGCATAT
* * * * * *
5094172 CAAATTAACAGCATACCTCAAGGCGGGAAGGGTTATCTATCAATGAAAA-CTTTGAGTTCGATTC
1 CAAATTAACAGCATAGCTCAAGTCGAGAAGGGTTATCT-TTAA-AAAAACCTTCGAGTTCGATTC
*
5094236 CATTCAGCTC-GAGTGCATAT
64 CATTCA-CTCAAAG-GCATAT
5094256 CAA
1 CAA
5094259 CCGCATGGTA
Statistics
Matches: 149, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
83 4 0.03
84 69 0.46
85 76 0.51
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (82 bp):
CAAATTAACAGCATAGCTCAAGTCGAGAAGGGTTATCTTTAAAAAAACCTTCGAGTTCGATTCCA
TTCACTCAAAGGCATAT
Found at i:5094826 original size:26 final size:26
Alignment explanation
Indices: 5094797--5094861 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
5094787 CCCACTATCT
5094797 ACCACTACCCACCAACCACCTAATCC
1 ACCACTACCCACCAACCACCTAATCC
* *
5094823 ACCACTAACCACTAACCACCTAATCC
1 ACCACTACCCACCAACCACCTAATCC
5094849 ACCACTACCCACC
1 ACCACTACCCACC
5094862 TAATTATCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.35, C:0.52, G:0.00, T:0.12
Consensus pattern (26 bp):
ACCACTACCCACCAACCACCTAATCC
Found at i:5095643 original size:20 final size:20
Alignment explanation
Indices: 5095620--5095671 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
5095610 CTTTTTTTGT
*
5095620 TTTTTTAATTTAAAATTTAA
1 TTTTTTATTTTAAAATTTAA
*
5095640 TTTTTTATTTTAAATTTTAA
1 TTTTTTATTTTAAAATTTAA
*
5095660 ATTTTTATTTTA
1 TTTTTTATTTTA
5095672 TTTTTCCCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTTATTTTAAAATTTAA
Found at i:5095643 original size:26 final size:26
Alignment explanation
Indices: 5095621--5095675 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
5095611 TTTTTTTGTT
*
5095621 TTTTTAATTTAAAATTTAATTTTTTA
1 TTTTAAATTTAAAATTTAATTTTTTA
*
5095647 TTTTAAATTTTAAATTT--TTATTTTA
1 TTTTAAATTTAAAATTTAATT-TTTTA
5095672 TTTT
1 TTTT
5095676 TCCCTTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 9 0.35
26 15 0.58
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTAAATTTAAAATTTAATTTTTTA
Found at i:5121688 original size:26 final size:26
Alignment explanation
Indices: 5121659--5121719 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
5121649 TACAAAGTAC
5121659 ATTACATTAGAAACATTAAC-CTATAA
1 ATTACATTAGAAACATTAACTCT-TAA
* * * *
5121685 ATTATATTTGAAGCATTAACTCTTAC
1 ATTACATTAGAAACATTAACTCTTAA
5121711 ATTACATTA
1 ATTACATTA
5121720 CAATACAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.38
Consensus pattern (26 bp):
ATTACATTAGAAACATTAACTCTTAA
Found at i:5122560 original size:20 final size:21
Alignment explanation
Indices: 5122537--5122581 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
5122527 GGTCAAGAAC
* *
5122537 ATCATTTAATGGTA-TGATAT
1 ATCATTGAATGGAAGTGATAT
*
5122557 ATCATTGAATTGAAGTGATAT
1 ATCATTGAATGGAAGTGATAT
5122578 ATCA
1 ATCA
5122582 CTAACAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.40
Consensus pattern (21 bp):
ATCATTGAATGGAAGTGATAT
Found at i:5122754 original size:148 final size:148
Alignment explanation
Indices: 5122398--5122812 Score: 383
Period size: 148 Copynumber: 2.8 Consensus size: 148
5122388 TGATAAGGTC
* * * * * * * ****
5122398 TGATATGTCACAGAATTGAGGTGATATATCACTGAAAAAGTTCAGAAATGAAGTGATTGGGCACT
1 TGATATATCACTGAATTGAAGTGATATATCACT-AACAAGTTAAAAAATGCAGTGATCAAACACT
* * * * * *
5122463 GAAAAGTTT-TTATCATTGTTCATTAAATGGTCACTGATAAAATGACATTTTTTTTATTAAAAAT
65 GAAAAGTTTATGA-CATTGTTAATTCAATGGTCACTGA-AAAATGGC---GTTTTCATTAAAAAT
* *
5122527 GGTCAAGAACATCATTTAATGGTA
125 GGTCAAAAACATCATTAAATGGTA
* * *
5122551 TGATATATCATTGAATTGAAGTGATATATCACTAACAAGTTCATAAATGCAGTGATCAAACACAT
1 TGATATATCACTGAATTGAAGTGATATATCACTAACAAGTTAAAAAATGCAGTGATCAAACAC-T
* *
5122616 -AAAGGTTTATGACATTGTTAATTCAATGGTCACT-AAGAAATGGCGTTTTCATTAAAATTGGTC
65 GAAAAGTTTATGACATTGTTAATTCAATGGTCACTGAA-AAATGGCGTTTTCATTAAAAATGGTC
5122679 AAAAATC-TCATTAAATGGTA
129 AAAAA-CATCATTAAATGGTA
* * * ***
5122699 TGATATATCACTGAATTGAAGTGATATATCACTGAA-AATTTAAAAAAT-TATGTGATTAGGTAC
1 TGATATATCACTGAATTGAAGTGATATATCACT-AACAAGTTAAAAAATGCA-GTGATCAAACAC
* ** *
5122762 TGAAAAGTTTCTTCCATTGTTAATTCATTGGTCACTGAAAAATGGCGTTTT
64 TGAAAAGTTTATGACATTGTTAATTCAATGGTCACTGAAAAATGGCGTTTT
5122813 TCTTTTAAAT
Statistics
Matches: 219, Mismatches: 35, Indels: 21
0.80 0.13 0.08
Matches are distributed among these distances:
147 2 0.01
148 122 0.56
149 5 0.02
150 1 0.00
151 7 0.03
152 50 0.23
153 32 0.15
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (148 bp):
TGATATATCACTGAATTGAAGTGATATATCACTAACAAGTTAAAAAATGCAGTGATCAAACACTG
AAAAGTTTATGACATTGTTAATTCAATGGTCACTGAAAAATGGCGTTTTCATTAAAAATGGTCAA
AAACATCATTAAATGGTA
Found at i:5125434 original size:3 final size:3
Alignment explanation
Indices: 5125426--5125477 Score: 95
Period size: 3 Copynumber: 17.3 Consensus size: 3
5125416 AAATAAACTT
*
5125426 TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
5125474 TTC T
1 TTC T
5125478 CGATTTTCAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:5127814 original size:6 final size:6
Alignment explanation
Indices: 5127805--5127851 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
5127795 AAGAGAGAAA
* *
5127805 AAAAAT AAAAAT AAAAAT ACAAAT ATAACAT -AAAAT AATAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AA-AAAT AAAA
5127852 TAGTAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
5 4 0.12
6 21 0.62
7 9 0.26
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:5127936 original size:10 final size:9
Alignment explanation
Indices: 5127907--5127981 Score: 53
Period size: 10 Copynumber: 7.8 Consensus size: 9
5127897 GAACATCAAG
*
5127907 TAAATAAAA
1 TAAAAAAAA
5127916 T-AAAAAAA
1 TAAAAAAAA
5127924 TAAAAACAAA
1 TAAAAA-AAA
5127934 TAAAAGAAAA
1 TAAAA-AAAA
*
5127944 AAACAAAAAA
1 TAA-AAAAAA
*
5127954 TAATGTAAAAAG
1 TAA---AAAAAA
*
5127966 TGAAAAAAA
1 TAAAAAAAA
5127975 TAAAAAA
1 TAAAAAA
5127982 TAAAATATGC
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
8 7 0.13
9 16 0.31
10 19 0.37
11 3 0.06
12 7 0.13
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:5127936 original size:18 final size:17
Alignment explanation
Indices: 5127913--5127950 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
5127903 CAAGTAAATA
5127913 AAATAAAAAAATAAAAAC
1 AAATAAAAAAA-AAAAAC
*
5127931 AAATAAAAGAAAAAAAC
1 AAATAAAAAAAAAAAAC
5127948 AAA
1 AAA
5127951 AAATAATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (17 bp):
AAATAAAAAAAAAAAAC
Found at i:5127937 original size:23 final size:23
Alignment explanation
Indices: 5127908--5127952 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
5127898 AACATCAAGT
* *
5127908 AAATAAAATAAAAAAATAAAAAC
1 AAATAAAAGAAAAAAACAAAAAC
5127931 AAATAAAAGAAAAAAACAAAAA
1 AAATAAAAGAAAAAAACAAAAA
5127953 ATAATGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.84, C:0.04, G:0.02, T:0.09
Consensus pattern (23 bp):
AAATAAAAGAAAAAAACAAAAAC
Found at i:5128201 original size:44 final size:43
Alignment explanation
Indices: 5128134--5128223 Score: 155
Period size: 44 Copynumber: 2.1 Consensus size: 43
5128124 ATAACTATAT
5128134 ATATTAAATAAAAAAGGGAATAATAATAAATTCAAA-AATAATA
1 ATATTAAATAAAAAAGGGAATAATAATAAATT-AAAGAATAATA
5128177 ATATTAAATAAAAAAAGGGAATAATAATAAATTAAAGAATAATA
1 ATATTAAAT-AAAAAAGGGAATAATAATAAATTAAAGAATAATA
5128221 ATA
1 ATA
5128224 AAAAATATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
43 12 0.27
44 33 0.73
ACGTcount: A:0.66, C:0.01, G:0.08, T:0.26
Consensus pattern (43 bp):
ATATTAAATAAAAAAGGGAATAATAATAAATTAAAGAATAATA
Found at i:5128219 original size:15 final size:15
Alignment explanation
Indices: 5128152--5128221 Score: 65
Period size: 15 Copynumber: 4.7 Consensus size: 15
5128142 TAAAAAAGGG
5128152 AATAATAATAAATTCA
1 AATAATAATAAATT-A
5128168 AA-AATAATAATATTA
1 AATAATAATAA-ATTA
***
5128183 AATAA-AA-AAAGGG
1 AATAATAATAAATTA
5128196 AATAATAATAAATTA
1 AATAATAATAAATTA
*
5128211 AAGAATAATAA
1 AATAATAATAA
5128222 TAAAAAATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
13 6 0.14
14 4 0.09
15 26 0.60
16 7 0.16
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (15 bp):
AATAATAATAAATTA
Found at i:5131334 original size:17 final size:17
Alignment explanation
Indices: 5131305--5131355 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
5131295 TGAACCCACC
*
5131305 TTAT-TTTTTTTCTCTTT
1 TTATCTTTTGTTCT-TTT
5131322 TT-TCTTTTGTTCTTTT
1 TTATCTTTTGTTCTTTT
*
5131338 TTATCTTTT-ATCTTTT
1 TTATCTTTTGTTCTTTT
5131354 TT
1 TT
5131356 TTTAATTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 14 0.47
17 16 0.53
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (17 bp):
TTATCTTTTGTTCTTTT
Found at i:5141333 original size:6 final size:6
Alignment explanation
Indices: 5141324--5141410 Score: 56
Period size: 6 Copynumber: 14.5 Consensus size: 6
5141314 AGAAAGTGAA
* * * *
5141324 AAAAAT AAAAA- AAATAAA AAAAAT -AAAAT ACAAAT ACAAAT ACAAAT
1 AAAAAT AAAAAT AAA-AAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
5141371 AAAACAT AAAACAT AAAACA- ATAAAT -AAAAT AATAAT AAA
1 AAAA-AT AAAA-AT AAAA-AT AAAAAT AAAAAT AAAAAT AAA
5141411 CTATATACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
5 13 0.19
6 37 0.54
7 18 0.26
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:5141333 original size:8 final size:9
Alignment explanation
Indices: 5141322--5141374 Score: 61
Period size: 9 Copynumber: 5.3 Consensus size: 9
5141312 AAAGAAAGTG
5141322 AAAAAAATA
1 AAAAAAATA
5141331 AAAAAAATA
1 AAAAAAATA
5141340 AAAAAAATA
1 AAAAAAATA
5141349 AAATACAAATA
1 AAA-A-AAATA
5141360 CAAATACAAATA
1 -AAA-A-AAATA
5141372 AAA
1 AAA
5141375 CATAAAACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
9 21 0.51
10 1 0.02
11 8 0.20
12 11 0.27
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAAATA
Found at i:5141538 original size:18 final size:20
Alignment explanation
Indices: 5141498--5141543 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
5141488 AGAAAAAACG
* *
5141498 AAAAATAATGTAAAAAGTGA
1 AAAAATAATGAAAAAAATGA
5141518 AAAAATAAT-AAAAAAAT-A
1 AAAAATAATGAAAAAAATGA
5141536 AAAAATAA
1 AAAAATAA
5141544 AATATGCGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 6 0.25
20 9 0.38
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (20 bp):
AAAAATAATGAAAAAAATGA
Found at i:5141720 original size:18 final size:17
Alignment explanation
Indices: 5141699--5141743 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
5141689 TATAGATTAA
* *
5141699 AATAAAAAAGGGAATACT
1 AATAAAAAA-AGAATAAT
5141717 AATAAATAAAAGAATAAT
1 AATAAA-AAAAGAATAAT
5141735 AATAAAAAA
1 AATAAAAAA
5141744 TAATAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (17 bp):
AATAAAAAAAGAATAAT
Found at i:5141735 original size:21 final size:20
Alignment explanation
Indices: 5141711--5141796 Score: 68
Period size: 21 Copynumber: 4.1 Consensus size: 20
5141701 TAAAAAAGGG
5141711 AATACTAATAAATAAAAGAAT
1 AATACTAATAAATAAAA-AAT
* * *
5141732 AATAATAAAAAATAATAAAT
1 AATACTAATAAATAAAAAAT
5141752 AAATA-TAGATAAATAAAAAA-
1 -AATACTA-ATAAATAAAAAAT
*
5141772 AATACACTATTTAAATAAAAAAT
1 AAT--ACTA-ATAAATAAAAAAT
5141795 AA
1 AA
5141797 GAAATAAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
19 3 0.06
20 5 0.10
21 29 0.56
22 13 0.25
23 2 0.04
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.24
Consensus pattern (20 bp):
AATACTAATAAATAAAAAAT
Found at i:5141803 original size:14 final size:14
Alignment explanation
Indices: 5141784--5141810 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5141774 TACACTATTT
5141784 AAATAAAAAATAAG
1 AAATAAAAAATAAG
5141798 AAATAAAAAATAA
1 AAATAAAAAATAA
5141811 TAATGAAACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (14 bp):
AAATAAAAAATAAG
Found at i:5150502 original size:37 final size:38
Alignment explanation
Indices: 5150461--5150533 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
5150451 AAAATGTTTA
5150461 TTAATTTTTATATGAA-AAAATATTTTATTTAATAAAC
1 TTAATTTTTATATGAATAAAATATTTTATTTAATAAAC
* * * *
5150498 TTAATTTTTATTTGAATTAACTCTTTTATTTAATAA
1 TTAATTTTTATATGAATAAAATATTTTATTTAATAA
5150534 TTTTTTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 15 0.48
38 16 0.52
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (38 bp):
TTAATTTTTATATGAATAAAATATTTTATTTAATAAAC
Found at i:5150555 original size:15 final size:15
Alignment explanation
Indices: 5150537--5150587 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
5150527 TTAATAATTT
*
5150537 TTTATATAATTTATA
1 TTTAAATAATTTATA
* *
5150552 TTTAAATTATTAATA
1 TTTAAATAATTTATA
5150567 TTTTAAATAATTTATA
1 -TTTAAATAATTTATA
5150583 TTTAA
1 TTTAA
5150588 GTAACTGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 17 0.57
16 13 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAAATAATTTATA
Found at i:5150573 original size:16 final size:16
Alignment explanation
Indices: 5150531--5150585 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
5150521 TTTTATTTAA
* *
5150531 TAATTTTTTATATAAT
1 TAATATTTTAAATAAT
* *
5150547 TTATA-TTTAAATTAT
1 TAATATTTTAAATAAT
5150562 TAATATTTTAAATAAT
1 TAATATTTTAAATAAT
*
5150578 TTATATTT
1 TAATATTT
5150586 AAGTAACTGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
15 12 0.39
16 19 0.61
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TAATATTTTAAATAAT
Found at i:5151450 original size:19 final size:19
Alignment explanation
Indices: 5151426--5151464 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
5151416 AGTCACGTGA
5151426 AATTTACTATAATAAAACC
1 AATTTACTATAATAAAACC
5151445 AATTTACTATAATAAAACC
1 AATTTACTATAATAAAACC
5151464 A
1 A
5151465 TCCATGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (19 bp):
AATTTACTATAATAAAACC
Found at i:5155305 original size:40 final size:40
Alignment explanation
Indices: 5155221--5155341 Score: 181
Period size: 40 Copynumber: 3.0 Consensus size: 40
5155211 TGCAGGTTTA
*
5155221 TAATACACTTCGGTGTATATGGT-GGCACAACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
5155260 TAATACACTTCGGTGTATATGGTGGGCATGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
* * * *
5155300 TAATACACTTCAGTGTATCTGGTGGGAAGGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
5155340 TA
1 TA
5155342 GCACTACGGT
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
39 23 0.31
40 52 0.69
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:5155535 original size:45 final size:45
Alignment explanation
Indices: 5155446--5155621 Score: 327
Period size: 45 Copynumber: 3.9 Consensus size: 45
5155436 GTTAGCATGC
*
5155446 AAATAAGCTTACGAGCTTATGGAAT-AATGGCAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
5155490 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
*
5155535 AAATAAGCTTACGAACTTATGGAATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
5155580 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTG
5155622 ATAAGAAATT
Statistics
Matches: 128, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
44 25 0.20
45 103 0.80
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
Found at i:5156114 original size:22 final size:22
Alignment explanation
Indices: 5156073--5156115 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
5156063 TACACTATTC
* *
5156073 ACTGTTCACGGTATTGTTCATT
1 ACTGTTCACGGTACTATTCATT
*
5156095 ACTGTTCATGGTACTATTCAT
1 ACTGTTCACGGTACTATTCAT
5156116 AAAAAATCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (22 bp):
ACTGTTCACGGTACTATTCATT
Found at i:5159436 original size:23 final size:23
Alignment explanation
Indices: 5159392--5159438 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
5159382 TGGTGCTTGG
*
5159392 TTTAATGGATGTTTAGACTTTAT
1 TTTAATGGATATTTAGACTTTAT
*
5159415 TTTAATGGTATATTTA-AGTTTAT
1 TTTAATGG-ATATTTAGACTTTAT
5159438 T
1 T
5159439 GTGGTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.55
Consensus pattern (23 bp):
TTTAATGGATATTTAGACTTTAT
Found at i:5159946 original size:11 final size:11
Alignment explanation
Indices: 5159932--5159956 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5159922 TTATTTTCAT
5159932 TTTATTTACTG
1 TTTATTTACTG
5159943 TTTATTTACTG
1 TTTATTTACTG
5159954 TTT
1 TTT
5159957 TTACCATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTATTTACTG
Found at i:5166189 original size:20 final size:20
Alignment explanation
Indices: 5166164--5166202 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
5166154 TCCCTCTTAA
5166164 ACTTTTAACATTTT-CTTTTC
1 ACTTTTAAC-TTTTACTTTTC
5166184 ACTTTTAACTTTTACTTTT
1 ACTTTTAACTTTTACTTTT
5166203 TATCTCTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.62
Consensus pattern (20 bp):
ACTTTTAACTTTTACTTTTC
Found at i:5170723 original size:7 final size:7
Alignment explanation
Indices: 5170711--5170737 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
5170701 GTCAAAGAAA
5170711 GTCAACG
1 GTCAACG
5170718 GTCAACG
1 GTCAACG
5170725 GTCAACG
1 GTCAACG
5170732 GTCAAC
1 GTCAAC
5170738 AGTCGGGTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.15
Consensus pattern (7 bp):
GTCAACG
Found at i:5170749 original size:5 final size:5
Alignment explanation
Indices: 5170739--5170792 Score: 54
Period size: 5 Copynumber: 10.0 Consensus size: 5
5170729 ACGGTCAACA
* *
5170739 GTCGG GTCGG GTCGG GTCAACG GTCGG GTCGG GTCGG GTCAACG GTCGG
1 GTCGG GTCGG GTCGG GTC--GG GTCGG GTCGG GTCGG GTC--GG GTCGG
5170788 GTCGG
1 GTCGG
5170793 TCAGACCGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 33 0.80
7 8 0.20
ACGTcount: A:0.07, C:0.22, G:0.52, T:0.19
Consensus pattern (5 bp):
GTCGG
Found at i:5170758 original size:22 final size:22
Alignment explanation
Indices: 5170731--5170792 Score: 115
Period size: 22 Copynumber: 2.8 Consensus size: 22
5170721 AACGGTCAAC
*
5170731 GGTCAACAGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
5170753 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
5170775 GGTCAACGGTCGGGTCGG
1 GGTCAACGGTCGGGTCGG
5170793 TCAGACCGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.11, C:0.23, G:0.48, T:0.18
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:5170802 original size:9 final size:9
Alignment explanation
Indices: 5170790--5170926 Score: 103
Period size: 10 Copynumber: 14.4 Consensus size: 9
5170780 ACGGTCGGGT
*
5170790 CGGTCAGAC
1 CGGTCAAAC
5170799 CGGTCAAAC
1 CGGTCAAAC
**
5170808 CGGTTCGGAC
1 CGG-TCAAAC
5170818 CGGTCAAAC
1 CGGTCAAAC
**
5170827 CGGTTCGGAC
1 CGG-TCAAAC
5170837 CGGTCAAAC
1 CGGTCAAAC
**
5170846 CGGTTCGGAC
1 CGG-TCAAAC
5170856 CGGTCAAAC
1 CGGTCAAAC
*
5170865 CGGTTCGAAC
1 CGG-TCAAAC
*
5170875 CGGTTGAAAC
1 CGG-TCAAAC
**
5170885 CTTTCAAAC
1 CGGTCAAAC
5170894 CGGTTCAAAC
1 CGG-TCAAAC
*
5170904 CGGTTGAAAC
1 CGG-TCAAAC
5170914 CGGTCAAAC
1 CGGTCAAAC
5170923 CGGT
1 CGGT
5170927 TTCCAGCAGC
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
9 47 0.47
10 53 0.53
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (9 bp):
CGGTCAAAC
Found at i:5170820 original size:19 final size:19
Alignment explanation
Indices: 5170796--5170927 Score: 169
Period size: 19 Copynumber: 6.9 Consensus size: 19
5170786 GGGTCGGTCA
5170796 GACCGGTCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
5170815 GACCGGTCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
5170834 GACCGGTCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
5170853 GACCGGTCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
* * * *
5170872 AACCGGTTGAAACC-TTTCA
1 GACCGG-TCAAACCGGTTCG
*
5170891 AACCGGTTCAAACCGGTT-G
1 GACCGG-TCAAACCGGTTCG
*
5170910 AAACCGGTCAAACCGGTT
1 -GACCGGTCAAACCGGTT
5170928 TCCAGCAGCC
Statistics
Matches: 103, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
19 89 0.86
20 14 0.14
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (19 bp):
GACCGGTCAAACCGGTTCG
Found at i:5170875 original size:29 final size:29
Alignment explanation
Indices: 5170797--5170927 Score: 142
Period size: 29 Copynumber: 4.6 Consensus size: 29
5170787 GGTCGGTCAG
** *
5170797 ACCGGTCAAACCGGTTCGGACCGG-TCAA
1 ACCGGTCAAACCGGTTCAAACCGGTTGAA
** *
5170825 ACCGGTTCGGACCGG-TCAAACCGGTTCG-G
1 ACCGG-TCAAACCGGTTCAAACCGGTT-GAA
*
5170854 ACCGGTCAAACCGGTTCGAACCGGTTGAA
1 ACCGGTCAAACCGGTTCAAACCGGTTGAA
**
5170883 ACCTTTCAAACCGGTTCAAACCGGTTGAA
1 ACCGGTCAAACCGGTTCAAACCGGTTGAA
5170912 ACCGGTCAAACCGGTT
1 ACCGGTCAAACCGGTT
5170928 TCCAGCAGCC
Statistics
Matches: 83, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
28 20 0.24
29 63 0.76
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (29 bp):
ACCGGTCAAACCGGTTCAAACCGGTTGAA
Found at i:5178114 original size:5 final size:5
Alignment explanation
Indices: 5178104--5178171 Score: 82
Period size: 5 Copynumber: 12.8 Consensus size: 5
5178094 AACGGTCAAC
* *
5178104 GGTCG GGTCG GGTCG GGTCG GGTCG GGTCAAC GGTCG GGTCG GGTCG GGTCAAC
1 GGTCG GGTCG GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTC--G
5178158 GGTCG GGTCG GGTC
1 GGTCG GGTCG GGTC
5178172 AGACCGGTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
5 47 0.85
7 8 0.15
ACGTcount: A:0.06, C:0.22, G:0.53, T:0.19
Consensus pattern (5 bp):
GGTCG
Found at i:5178127 original size:27 final size:27
Alignment explanation
Indices: 5178097--5178171 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
5178087 GAAAGTCAAC
5178097 GGTCAACGGTCGGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCGGGTCG
* *
5178124 GGTC--GGGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTC--GGGTCGGGTCGGGTCG
5178151 GGTCAACGGTCGGGTCGGGTC
1 GGTCAACGGTCGGGTCGGGTC
5178172 AGACCGGTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
25 4 0.10
27 32 0.80
29 4 0.10
ACGTcount: A:0.08, C:0.23, G:0.51, T:0.19
Consensus pattern (27 bp):
GGTCAACGGTCGGGTCGGGTCGGGTCG
Found at i:5178139 original size:22 final size:22
Alignment explanation
Indices: 5178114--5178171 Score: 116
Period size: 22 Copynumber: 2.6 Consensus size: 22
5178104 GGTCGGGTCG
5178114 GGTCGGGTCGGGTCGGGTCAAC
1 GGTCGGGTCGGGTCGGGTCAAC
5178136 GGTCGGGTCGGGTCGGGTCAAC
1 GGTCGGGTCGGGTCGGGTCAAC
5178158 GGTCGGGTCGGGTC
1 GGTCGGGTCGGGTC
5178172 AGACCGGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.07, C:0.22, G:0.52, T:0.19
Consensus pattern (22 bp):
GGTCGGGTCGGGTCGGGTCAAC
Found at i:5178186 original size:9 final size:9
Alignment explanation
Indices: 5178168--5178266 Score: 54
Period size: 9 Copynumber: 10.3 Consensus size: 9
5178158 GGTCGGGTCG
*
5178168 GGTCAGACC
1 GGTCAAACC
5178177 GGTCAAACC
1 GGTCAAACC
*
5178186 GGTTCAGACC
1 GG-TCAAACC
5178196 GGTCAAACC
1 GGTCAAACC
** *
5178205 GGTTTGAACT
1 GG-TCAAACC
*
5178215 GGTTGAAACC
1 GG-TCAAACC
*
5178225 GGTCAAATC
1 GGTCAAACC
*
5178234 GATCAGAACC
1 GGTCA-AACC
*
5178244 GGTTGAAAACC
1 GG-T-CAAACC
*
5178255 GGTTAAACC
1 GGTCAAACC
5178264 GGT
1 GGT
5178267 TTCCAGCAGC
Statistics
Matches: 69, Mismatches: 16, Indels: 10
0.73 0.17 0.11
Matches are distributed among these distances:
9 35 0.51
10 26 0.38
11 7 0.10
12 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.19
Consensus pattern (9 bp):
GGTCAAACC
Found at i:5178192 original size:19 final size:19
Alignment explanation
Indices: 5178170--5178208 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
5178160 TCGGGTCGGG
5178170 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
5178189 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
5178208 T
1 T
5178209 TGAACTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.18
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:5178228 original size:29 final size:30
Alignment explanation
Indices: 5178193--5178268 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 30
5178183 ACCGGTTCAG
*
5178193 ACCGGTCAAACCGGTTTGAACTGGTTG-AA
1 ACCGGTCAAACCGGTTTGAACCGGTTGAAA
* * **
5178222 ACCGGTCAAATCGATCAGAACCGGTTGAAA
1 ACCGGTCAAACCGGTTTGAACCGGTTGAAA
*
5178252 ACCGGTTAAACCGGTTT
1 ACCGGTCAAACCGGTTT
5178269 CCAGCAGCCA
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 22 0.61
30 14 0.39
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (30 bp):
ACCGGTCAAACCGGTTTGAACCGGTTGAAA
Found at i:5179195 original size:23 final size:23
Alignment explanation
Indices: 5179151--5179197 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
5179141 TGGTGGTGGG
*
5179151 TTTAATGGATGTTTAGACTTTAT
1 TTTAATGGATATTTAGACTTTAT
*
5179174 TTTAATGGTATATTTA-AGTTTAT
1 TTTAATGG-ATATTTAGACTTTAT
5179197 T
1 T
5179198 GTGGTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.55
Consensus pattern (23 bp):
TTTAATGGATATTTAGACTTTAT
Found at i:5179707 original size:11 final size:11
Alignment explanation
Indices: 5179691--5179715 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5179681 TTCTTTTAAT
5179691 TTTATTTACTG
1 TTTATTTACTG
5179702 TTTATTTACTG
1 TTTATTTACTG
5179713 TTT
1 TTT
5179716 TTACCATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTATTTACTG
Found at i:5199550 original size:26 final size:27
Alignment explanation
Indices: 5199500--5199553 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
5199490 TTCGTTTTGG
*
5199500 TTTATATATATATATTATAATTAGTTA
1 TTTATATATATATATTATAACTAGTTA
* *
5199527 TTTATATGT-TATATTATTACTAGTTA
1 TTTATATATATATATTATAACTAGTTA
5199553 T
1 T
5199554 ATAAGGATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (27 bp):
TTTATATATATATATTATAACTAGTTA
Found at i:5199689 original size:33 final size:33
Alignment explanation
Indices: 5199627--5199692 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
5199617 CATTACTTAG
5199627 GTATATTATTAGTTATTAATATTAATTATGTGA
1 GTATATTATTAGTTATTAATATTAATTATGTGA
* *
5199660 GTATATATATATA-TTATTTATATT-CTTATGTGA
1 GTATAT-TAT-TAGTTATTAATATTAATTATGTGA
5199693 TTCGTCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 14 0.48
34 13 0.45
35 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (33 bp):
GTATATTATTAGTTATTAATATTAATTATGTGA
Found at i:5200219 original size:32 final size:32
Alignment explanation
Indices: 5200182--5200364 Score: 215
Period size: 32 Copynumber: 5.7 Consensus size: 32
5200172 ACAAAGAAAT
* * * *
5200182 GAGATAGGAACCAGAAAAAGGGAACCAAAGAG
1 GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
* *
5200214 GAGATAGCAACTAGAAAAGGGGTACTAGAGAG
1 GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
* * *
5200246 GGGATAACAACTA-AGAAAGGGGAACCATAGAG
1 GAGATAGCAACTAGA-AAAGGGGAACCAGAGAG
5200278 GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
1 GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
* * * * *
5200310 GGGATAACAACCATAAAAGGGGAACTAGAGAG
1 GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
*
5200342 GAGATAACAACTAGAAAAGGGGA
1 GAGATAGCAACTAGAAAAGGGGA
5200365 GGGAAATTTT
Statistics
Matches: 127, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
31 1 0.01
32 125 0.98
33 1 0.01
ACGTcount: A:0.48, C:0.11, G:0.32, T:0.08
Consensus pattern (32 bp):
GAGATAGCAACTAGAAAAGGGGAACCAGAGAG
Found at i:5200308 original size:64 final size:64
Alignment explanation
Indices: 5200190--5200364 Score: 253
Period size: 64 Copynumber: 2.7 Consensus size: 64
5200180 ATGAGATAGG
* * * *
5200190 AACCAGAAAAAGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGTACTAGAGAGGGGATAAC
1 AACCATAAAAGGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGAACCAGAGAGGGGATAAC
* *
5200254 AACTA-AGAAAGGGGAACCATAGAGGAGATAGCAACTAGAAAAGGGGAACCAGAGAGGGGATAAC
1 AACCATA-AAAGGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGAACCAGAGAGGGGATAAC
* * *
5200318 AACCATAAAAGGGGAACTAGAGAGGAGATAACAACTAGAAAAGGGGA
1 AACCATAAAAGGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGA
5200365 GGGAAATTTT
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
63 1 0.01
64 98 0.98
65 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.31, T:0.08
Consensus pattern (64 bp):
AACCATAAAAGGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGAACCAGAGAGGGGATAAC
Found at i:5200348 original size:96 final size:96
Alignment explanation
Indices: 5200182--5200364 Score: 260
Period size: 96 Copynumber: 1.9 Consensus size: 96
5200172 ACAAAGAAAT
* * * *
5200182 GAGATAGGAACCAGAAAAAGGGAACCAAAGAGGAGATAGCAACTAGAAAAGGGGTACTAGAGAGG
1 GAGATAGCAACCAGAAAAAGGGAACCAAAGAGGAGATAACAACCAGAAAAGGGGAACTAGAGAGG
*
5200247 GGATAACAACTA-AGAAAGGGGAACCATAGAG
66 AGATAACAACTAGA-AAAGGGGAACCATAGAG
* * * * *
5200278 GAGATAGCAACTAGAAAAGGGGAACCAGAGAGGGGATAACAACCATAAAAGGGGAACTAGAGAGG
1 GAGATAGCAACCAGAAAAAGGGAACCAAAGAGGAGATAACAACCAGAAAAGGGGAACTAGAGAGG
5200343 AGATAACAACTAGAAAAGGGGA
66 AGATAACAACTAGAAAAGGGGA
5200365 GGGAAATTTT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
96 75 0.99
97 1 0.01
ACGTcount: A:0.48, C:0.11, G:0.32, T:0.08
Consensus pattern (96 bp):
GAGATAGCAACCAGAAAAAGGGAACCAAAGAGGAGATAACAACCAGAAAAGGGGAACTAGAGAGG
AGATAACAACTAGAAAAGGGGAACCATAGAG
Found at i:5201796 original size:19 final size:20
Alignment explanation
Indices: 5201766--5201816 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
5201756 CGGCCAAGAG
*
5201766 CATGTATCTTCATT-AAAAT
1 CATGTATTTTCATTAAAAAT
*
5201785 CATGTGTTTTCATTAAAAAT
1 CATGTATTTTCATTAAAAAT
5201805 CATGTATTTTCA
1 CATGTATTTTCA
5201817 AAGGGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (20 bp):
CATGTATTTTCATTAAAAAT
Found at i:5202401 original size:33 final size:33
Alignment explanation
Indices: 5202362--5202440 Score: 131
Period size: 33 Copynumber: 2.4 Consensus size: 33
5202352 TTTCTTATCA
5202362 ATTCATTTCTTTCATAATTTCATAATTCCATTT
1 ATTCATTTCTTTCATAATTTCATAATTCCATTT
* *
5202395 ATTCATTTCTTTCATTATTTCTTAATTCCATTT
1 ATTCATTTCTTTCATAATTTCATAATTCCATTT
*
5202428 AATCATTTCTTTC
1 ATTCATTTCTTTC
5202441 TTTATATTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (33 bp):
ATTCATTTCTTTCATAATTTCATAATTCCATTT
Found at i:5215707 original size:17 final size:17
Alignment explanation
Indices: 5215685--5215717 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5215675 TACTGATTGG
*
5215685 TGACAAAGAGTTGTCAT
1 TGACAAAGAGATGTCAT
5215702 TGACAAAGAGATGTCA
1 TGACAAAGAGATGTCA
5215718 GAATTGATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
TGACAAAGAGATGTCAT
Found at i:5221836 original size:14 final size:14
Alignment explanation
Indices: 5221817--5221850 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
5221807 ATTCGGACAG
5221817 CAGATTATGCAAAA
1 CAGATTATGCAAAA
*
5221831 CAGATTATGTAAAA
1 CAGATTATGCAAAA
5221845 CAGATT
1 CAGATT
5221851 CTGTTGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (14 bp):
CAGATTATGCAAAA
Found at i:5223044 original size:46 final size:46
Alignment explanation
Indices: 5222987--5223106 Score: 215
Period size: 46 Copynumber: 2.6 Consensus size: 46
5222977 TAAACGATAA
*
5222987 ATTGG-AAAATAAGCTTAAGAGCTTATGGTATTAAATGGCAAGTAT
1 ATTGGTAAAATAAGCTTACGAGCTTATGGTATTAAATGGCAAGTAT
*
5223032 ATTGGTAAAATAAGCTTACGAGCTTATGGTATTAAATGGTAAGTAT
1 ATTGGTAAAATAAGCTTACGAGCTTATGGTATTAAATGGCAAGTAT
5223078 ATTGGTAAAATAAGCTTACGAGCTTATGG
1 ATTGGTAAAATAAGCTTACGAGCTTATGG
5223107 GAAAATGGTA
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
45 5 0.07
46 67 0.93
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.33
Consensus pattern (46 bp):
ATTGGTAAAATAAGCTTACGAGCTTATGGTATTAAATGGCAAGTAT
Found at i:5223632 original size:13 final size:13
Alignment explanation
Indices: 5223611--5223643 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
5223601 CAATGTTCAA
5223611 TGTTCACGGGCAC
1 TGTTCACGGGCAC
*
5223624 TGTTTACGGGCAC
1 TGTTCACGGGCAC
5223637 TGTTCAC
1 TGTTCAC
5223644 TATTCAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.30
Consensus pattern (13 bp):
TGTTCACGGGCAC
Found at i:5224324 original size:9 final size:9
Alignment explanation
Indices: 5224310--5224359 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
5224300 CCTACACTTT
5224310 TTCTTATTC
1 TTCTTATTC
5224319 TTCTTATTC
1 TTCTTATTC
5224328 TTCTTATTC
1 TTCTTATTC
*
5224337 TTCTTCTTC
1 TTCTTATTC
*
5224346 TTCTTCTTC
1 TTCTTATTC
5224355 TTCTT
1 TTCTT
5224360 TACTTTGGTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (9 bp):
TTCTTATTC
Found at i:5224331 original size:3 final size:3
Alignment explanation
Indices: 5224310--5224359 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
5224300 CCTACACTTT
* * *
5224310 TTC TTA TTC TTC TTA TTC TTC TTA TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
5224358 TT
1 TT
5224360 TACTTTGGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:5225027 original size:17 final size:18
Alignment explanation
Indices: 5225005--5225046 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
5224995 ATACCATAGT
5225005 ATGGTA-GTATCGATACC
1 ATGGTAGGTATCGATACC
5225022 ATGGTAAGGGTATCGATACC
1 ATGGT-A-GGTATCGATACC
5225042 A-GGTA
1 ATGGTA
5225047 ACATCGAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.23
18 2 0.09
19 3 0.14
20 12 0.55
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (18 bp):
ATGGTAGGTATCGATACC
Found at i:5225036 original size:20 final size:20
Alignment explanation
Indices: 5224987--5225047 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 20
5224977 TACCGGAAGG
* * *
5224987 GGGTATCAATACCATAGTAT
1 GGGTATCGATACCATGGTAA
5225007 GGTAGTATCGATACCATGGTAA
1 GG--GTATCGATACCATGGTAA
5225029 GGGTATCGATACCA-GGTAA
1 GGGTATCGATACCATGGTAA
5225048 CATCGAAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.14
20 14 0.39
22 17 0.47
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (20 bp):
GGGTATCGATACCATGGTAA
Found at i:5225621 original size:34 final size:34
Alignment explanation
Indices: 5225556--5225623 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
5225546 CAATAGTTGA
*
5225556 AATACATATAGGTGCATTATCAGCATAAAAGAAT
1 AATACATATAGGTGCATTATCAGAATAAAAGAAT
* ** *
5225590 AATACATATGGGTGCATTATTGGAATGAAAGAAT
1 AATACATATAGGTGCATTATCAGAATAAAAGAAT
5225624 GCCATAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (34 bp):
AATACATATAGGTGCATTATCAGAATAAAAGAAT
Found at i:5225651 original size:26 final size:26
Alignment explanation
Indices: 5225614--5225664 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
5225604 CATTATTGGA
5225614 ATGAAAGAATGCCATAAATAAAATGC
1 ATGAAAGAATGCCATAAATAAAATGC
5225640 ATGAAATG-ATGCCATAAATAAAATG
1 ATGAAA-GAATGCCATAAATAAAATG
5225665 AAAGTTAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.53, C:0.10, G:0.16, T:0.22
Consensus pattern (26 bp):
ATGAAAGAATGCCATAAATAAAATGC
Found at i:5229260 original size:3 final size:3
Alignment explanation
Indices: 5229252--5229278 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
5229242 ATTCTTACAT
5229252 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
5229279 ACGTTGGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:5229933 original size:95 final size:95
Alignment explanation
Indices: 5229769--5229959 Score: 262
Period size: 95 Copynumber: 2.0 Consensus size: 95
5229759 TATACCGATG
* * *
5229769 TGGTAGTATCGATATCATGGTAATGGTATCGATACCAGACAACATTGAATCAAAAATTGATATCA
1 TGGTAGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCAAAAATTGATATCA
*
5229834 ATACC-AGAAGGGGGTATCAG-TACTATAGTA
66 ATACCGA-AAGGGGGTATC-GTTACCATAGTA
* * *
5229864 TGGTAGTATCGATACCATGGTAAGGGTATCGATACCAGTCAACATCGAA-GATAAAATTGGTATC
1 TGGTAGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCA-AAAATTGATATC
*
5229928 GATACCGAAAGGGGGTATCGTTACCATAGTA
65 AATACCGAAAGGGGGTATCGTTACCATAGTA
5229959 T
1 T
5229960 AAAAGTATCG
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
94 2 0.02
95 82 0.96
96 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (95 bp):
TGGTAGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCAAAAATTGATATCA
ATACCGAAAGGGGGTATCGTTACCATAGTA
Found at i:5229967 original size:95 final size:95
Alignment explanation
Indices: 5229773--5229980 Score: 251
Period size: 95 Copynumber: 2.2 Consensus size: 95
5229763 CCGATGTGGT
* * *
5229773 AGTATCGATATCATGGTAATGGTATCGATACCAGACAACATTGAATCAAAAATTGATATCAATAC
1 AGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCAAAAATTGATATCAATAC
* ***
5229838 CAGAAGGGGGTATCAGTACTATAGTATGGT
66 CAGAAGGGGGTATCAGTACCATAGTATAAA
* * * *
5229868 AGTATCGATACCATGGTAAGGGTATCGATACCAGTCAACATCGAA-GATAAAATTGGTATCGATA
1 AGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCA-AAAATTGATATCAATA
5229932 CC-GAAAGGGGGTATC-GTTACCATAGTATAAA
65 CCAG-AAGGGGGTATCAG-TACCATAGTATAAA
* *
5229963 AGTATCGGTACCAGGGTA
1 AGTATCGATACCATGGTA
5229981 GTAGTATCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
94 3 0.03
95 94 0.97
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (95 bp):
AGTATCGATACCATGGTAAGGGTATCGATACCAGACAACATCGAATCAAAAATTGATATCAATAC
CAGAAGGGGGTATCAGTACCATAGTATAAA
Found at i:5233743 original size:24 final size:24
Alignment explanation
Indices: 5233716--5233767 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
5233706 GAGTTTTGAA
5233716 ATACTAAAGAGGATTGTAAGAGAG
1 ATACTAAAGAGGATTGTAAGAGAG
5233740 ATACTAAAGAGGATTGTAAGAGAG
1 ATACTAAAGAGGATTGTAAGAGAG
5233764 ATAC
1 ATAC
5233768 CATCATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.06, G:0.27, T:0.21
Consensus pattern (24 bp):
ATACTAAAGAGGATTGTAAGAGAG
Found at i:5240039 original size:24 final size:24
Alignment explanation
Indices: 5240007--5240058 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
5239997 CAATGGAAAA
5240007 GGCGGTGGCACGTCATAAGGAGAT
1 GGCGGTGGCACGTCATAAGGAGAT
5240031 GGCGGTGGCACGTCATAAGGAGAT
1 GGCGGTGGCACGTCATAAGGAGAT
5240055 GGCG
1 GGCG
5240059 TCGGCTCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.17, G:0.44, T:0.15
Consensus pattern (24 bp):
GGCGGTGGCACGTCATAAGGAGAT
Found at i:5254351 original size:22 final size:21
Alignment explanation
Indices: 5254326--5254393 Score: 50
Period size: 22 Copynumber: 3.2 Consensus size: 21
5254316 CAGTAAGTCT
5254326 TTCGAGCATCATAATTAAATCA
1 TTCGAGCATCAT-ATTAAATCA
* * *
5254348 TTCGGGTCATC-TA-TAAGTCT
1 TTCGAG-CATCATATTAAATCA
* *
5254368 TTTGAGCATGATGATTAAATCA
1 TTCGAGCATCAT-ATTAAATCA
5254390 TTCG
1 TTCG
5254394 GGCCATTTAT
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 3 0.09
20 10 0.30
21 2 0.06
22 14 0.42
23 4 0.12
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (21 bp):
TTCGAGCATCATATTAAATCA
Found at i:5254358 original size:42 final size:41
Alignment explanation
Indices: 5254306--5254417 Score: 143
Period size: 42 Copynumber: 2.7 Consensus size: 41
5254296 TGGTAAGTCC
*
5254306 TTCGTGTCATCAGTAAGTCTTTCGAGCATCATAATTAAATCA
1 TTCGGGTCATCA-TAAGTCTTTCGAGCATCATAATTAAATCA
* * *
5254348 TTCGGGTCATCTATAAGTCTTTTGAGCATGATGATTAAATCA
1 TTCGGGTCATC-ATAAGTCTTTCGAGCATCATAATTAAATCA
* *
5254390 TTCGGGCCATTTATAAGTCTTTCGAGCA
1 TTCGGGTCA-TCATAAGTCTTTCGAGCA
5254418 ATATGATATG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
42 59 0.97
43 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (41 bp):
TTCGGGTCATCATAAGTCTTTCGAGCATCATAATTAAATCA
Found at i:5254424 original size:42 final size:42
Alignment explanation
Indices: 5254319--5254417 Score: 153
Period size: 42 Copynumber: 2.4 Consensus size: 42
5254309 GTGTCATCAG
* *
5254319 TAAGTCTTTCGAGCATCATAATTAAATCATTCGGGTCATCTA
1 TAAGTCTTTCGAGCATCATGATTAAATCATTCGGGCCATCTA
* * *
5254361 TAAGTCTTTTGAGCATGATGATTAAATCATTCGGGCCATTTA
1 TAAGTCTTTCGAGCATCATGATTAAATCATTCGGGCCATCTA
5254403 TAAGTCTTTCGAGCA
1 TAAGTCTTTCGAGCA
5254418 ATATGATATG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (42 bp):
TAAGTCTTTCGAGCATCATGATTAAATCATTCGGGCCATCTA
Found at i:5254706 original size:19 final size:20
Alignment explanation
Indices: 5254662--5254716 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
5254652 GGGTCATCTG
* *
5254662 TAAGTATTTCGAGCAATATGA
1 TAAGTCTTTCGGGC-ATATGA
5254683 TAAGTCTTTCGGGCATAT-A
1 TAAGTCTTTCGGGCATATGA
5254702 TAAGTCCTTT-GGGCA
1 TAAGT-CTTTCGGGCA
5254717 AGATACTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 11 0.35
20 8 0.26
21 12 0.39
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (20 bp):
TAAGTCTTTCGGGCATATGA
Found at i:5254711 original size:20 final size:19
Alignment explanation
Indices: 5254677--5254716 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
5254667 ATTTCGAGCA
5254677 ATATGATAAGTCTTTCGGGC
1 ATATGATAAGTCTTT-GGGC
5254697 ATAT-ATAAGTCCTTTGGGC
1 ATATGATAAGT-CTTTGGGC
5254716 A
1 A
5254717 AGATACTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (19 bp):
ATATGATAAGTCTTTGGGC
Found at i:5254852 original size:260 final size:256
Alignment explanation
Indices: 5254361--5255222 Score: 914
Period size: 260 Copynumber: 3.3 Consensus size: 256
5254351 GGGTCATCTA
* * * * * *
5254361 TAAGTCTTTTGAGCATGATGATTAAATCATTCGGGCCATTTATAAGTCTTTCGAGCAATATGATA
1 TAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTATAAGTATTTCGAGCAATATGATA
* * * * *
5254426 TGTCCTTCGAGCTATTTATAAGACCTTTGGGCAAGATGCTTTCATGTGATAATTTGAAAAATGAG
66 AGTCTTTCGGGCCATATATAAGACCTTTGGGCAAGATGCTTTCAT-TGATAATTTGAAAAAT-AG
* * ** * * * *
5254491 AAGATG-ATTTTAAAAGTTTCTCATTTAATGTTTTGAGAAATTG-AAATATTTGAAAATTAAGAA
129 AA-AAGCATTTTCAAAGTTTCTCATTTGGTATTTTCAAAAAATGAAAAT-TTTGAAAATTAAGAA
*
5254554 AGCGATTTCCAAAGTTTTTAATCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCA
192 AGCGATTTCCAAAGTTTTT-ACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCA
5254619 G
256 G
** ** *
5254620 TAAGTCTTTTTAGCATGATGATTAAATCCTTTGGGTCATCTGTAAGTATTTCGAGCAATATGATA
1 TAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTATAAGTATTTCGAGCAATATGATA
* * **
5254685 AGTCTTTCGGG-CATATATAAGTCCTTTGGGCAAGATACTTTCATATGATGTTTATGAAAAATAA
66 AGTCTTTCGGGCCATATATAAGACCTTTGGGCAAGATGCTTTCAT-TGATAATT-TGAAAAAT-A
* * *
5254749 GAAAAGCAATTTTCAAAGTTTCTTATTTGGTATTTTTAAAAAATGAAAATTTTGAAAAGTAAGAA
128 GAAAAGC-ATTTTCAAAGTTTCTCATTTGGTATTTTCAAAAAATGAAAATTTTGAAAATTAAGAA
* * * * * *
5254814 AGTGATTTCCAAAGTTTCTTACCCACTAAACTATTTCCAAAATTGGTAAATCATTTGAGCCATCA
192 AGCGATTTCCAAAGTTT-TTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCA
5254879 G
256 G
* * * *
5254880 TAAGTCTTTCGAGCATGGTGATTAAATCCTTCAGGTCATCTATCAGTCA-TTAGAG-TATGATGA
1 TAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTATAAGT-ATTTCGAGCAAT-ATGA
* * * * *
5254943 CAAGTCTTTCGGGTCATCTATAAGGCCTTTGGGCAAGATGCTTTCATT--TAATTTGAAATATAG
64 TAAGTCTTTCGGGCCATATATAAGACCTTTGGGCAAGATGCTTTCATTGATAATTTGAAAAATAG
* * * * * * *
5255006 TATAGCGATTTTCAAAGTATCTCATTTGGAATTTCCAAAAAACGAAATTTTTGAAAATTAAGAAA
129 AAAAGC-ATTTTCAAAGTTTCTCATTTGGTATTTTCAAAAAATGAAAATTTTGAAAATTAAGAAA
* * *
5255071 GCGATTTCCAAAGTTTTTTTACCTAGTGAACTATTTCCAAAATTTGTATGTCCTTC-AGGCCATC
193 GCGATTTCCAAAG--TTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGA-GCCATC
*
5255135 AA
255 AG
* * * ** * *
5255137 TAAGTCTTTCGAGCATGATGATTAAATCCTTCATGTTATCTGTCAA-CCTTTCGAGAAAGATGAT
1 TAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTAT-AAGTATTTCGAGCAATATGAT
*
5255201 AAGTCATTCGGGCCATATATAA
65 AAGTCTTTCGGGCCATATATAA
5255223 TGGAACTAGC
Statistics
Matches: 503, Mismatches: 86, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
256 69 0.14
257 111 0.22
258 45 0.09
259 80 0.16
260 161 0.32
261 37 0.07
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (256 bp):
TAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCATCTATAAGTATTTCGAGCAATATGATA
AGTCTTTCGGGCCATATATAAGACCTTTGGGCAAGATGCTTTCATTGATAATTTGAAAAATAGAA
AAGCATTTTCAAAGTTTCTCATTTGGTATTTTCAAAAAATGAAAATTTTGAAAATTAAGAAAGCG
ATTTCCAAAGTTTTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCGAGCCATCAG
Found at i:5259501 original size:862 final size:863
Alignment explanation
Indices: 5255223--5265310 Score: 14672
Period size: 863 Copynumber: 11.7 Consensus size: 863
5255213 CCATATATAA
*
5255223 TGGAACTAGCATAAGTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* *
5255288 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAGTGAGAAAGTCATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* *
5255353 TCTATTTGGACATTGAGAAAGCCATTTAACATCTTCACTAACTTCCCTTCCACTCCAAACCTATT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
* *
5255418 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACTGCAAATCACTTATTTTTCTCCTGGG
196 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
* *
5255483 CA-GTATATTTGTAATAAAAAAACAACAATTTTAGTAAGAAAATAGTTTAATTAATGAATATATT
261 CATG-ATATCTGTAAT-AAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATT
* * *
5255547 GAATCACAACAAGTTATAAGTTATAATATTATAAATTAATACATGTGGATATAAAATCTTACTAC
324 GAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTAC
* * * * **
5255612 ATTCTTAT-TTATATCAATTTTCATAAATATCTTCATCAACCTCCTCCCGAACCCATAAAAATTG
389 ATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATTG
* * * *
5255676 TGTAGTATTAATGATAGTTTCATCTAAGTTTTATGCTACACAAGGTAAAGAGTCAGATCTTG-TT
454 TGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTT
* *
5255740 CAACGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGAGGTATTACAGAGCACAACAT
519 CAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACAT
* *
5255805 ACCAAACCTCATCCATTGGATTGTGACAAT-AAAAAACTTGTTTCACTTAAGAAGAAAATACATA
584 ACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATA
* * * *
5255869 TGACTCATTCATCAATCATTGACCACTGTGAATTAATCAAGAGAAATTCACCACTGTAAAACTGA
649 TGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACTGA
* * * * * *
5255934 ATTTATCTCTTTTTATGCCTCGAGTAGTTTTTACATCAGCCCAGTCACATCAAAAC-AGCACATC
714 ATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCACAAC
* ** * * *
5255998 CTTTCGTTTCCATAATAATCTTGCTTAATAATGT-CTTAAGAATCCCATAATAATCTACATCTCA
779 CTTTCATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCC
* * *
5256062 CTGCTAATCATGATTGTCCC
844 CTCCAAATGATGATTGTCCC
*
5256082 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGCGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* *
5256147 CTTTCACGAGATTTCATGTGGGACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* * *
5256212 TCTATTTGGACCTTGAGAAAGCCATTTAACACCTTCACAAACTTCTCTTCTACTCCAAACCTATT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
* * * * * *
5256277 ACGCATTAATGGTGAATTAATTTTCATTGATGTCGATACTGCAAATCACTTATTTTTCTCTTACG
196 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
* * * * * *
5256342 CATGATATCTGTAGTAAAAAGAAAATATTTTTATTAAGAAAACGGTTTAATTAATGAATATATTG
261 CATGATATCTGTAATAAAAA-ACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTG
* * * *
5256407 AATGACAACATGTTATAAGTTATAATTTTATAAATTAATATATATGAATATAAAACCTTACTACA
325 AATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACA
* * *
5256472 TTCTTATGTCATATCAATTGTAATAAATATATTCATCAACGTCCTCCCGAACCCATTGAAATTGT
390 TTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATTGT
* * *
5256537 GTAATATTAGTGATAGTTTCATCTAAGTTTTGTTCTACAAAAGGTAAAGATTCAAATCTTGTTTC
455 GTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTC
* *
5256602 AATGTGATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGTTATTACAGAGCACAACATA
520 AATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATA
* * * *
5256667 CCAACCCTCATCCATTGAATTATGACCGTAGAAAAACTTGTTTCACTTAAGAAGAAAATACATAT
585 CCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATAT
* * *
5256732 GACTCATTCATCAATCGTTGACTAGTATGAATTAATCGAGAGAAATTCACCATTTTAAAACTGAA
650 GACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACTGAA
* * * * *
5256797 TTTATCTCTTTTAATGCATCAAGTAGTCTTTACATCAGACCATTCACACCGAAA-AATCACAACC
715 TTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCACAACC
* * *
5256861 TTTCATTTGCATAATAATATAACCTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCC
780 TTTCATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCC
5256926 TCCAAATGATGATTGTCCC
845 TCCAAATGATGATTGTCCC
* * *
5256945 TGGAACTAGCATAACTTGTAGTTGAAGAATTAACTACTACTCCATAATTTTGCGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* * * ** * *
5257010 CGTTCATGAGATTTTGTGTAAAACCTGAAACCATTAATGAGAAAGACATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
5257075 TCTATTTGGACCTTGAGAAAGCCATTTAAC-TCCTTCACTAACTTCTCTTCCACTCCAAACCTAT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACAT-CTTCACTAACTTCTCTTCCACTCCAAACCTAT
* * * *
5257139 TACACATGAATGGTGAATTAATTTACATTGATCTCGA-ATCCGCATATCACTTA-TTTTCTCTTA
195 TACACATGAATGGTGAATTAATTTGCATTGATGTCGATA-CCGCAAATCACTTATTTTTCTCCTA
* * * * * *
5257202 GGCAAGATATTTGTAATAAAAAACAACAATTTTATTAAGAAAATGGCTTAATTAATTAATAAATT
259 GGCATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATT
* * * *
5257267 GAATAACAACAAGTTATAAGTTATAATTTTATAAATTAATACCA-ATGGATATAAAATTTTACTA
324 GAATGACAACATGTTATAAGTTATAATATTATAAATTAATA-CATATGGATATAAAATCTTACTA
5257331 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCT-CTCGAACCCATTGAAAT
388 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCT-GAACCCATTGAAAT
* * *
5257395 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTACTATAAAAGGTAAAGATTTAGATCTTGT
452 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGT
5257460 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGAGGGTATTACAGAGCACAA
517 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG-GGGTATTACAGAGCACAA
* * * * *
5257525 TATACCAATCCTCATCCATTAGATTGTGACAGTAAAAAAAATTGTTTCACTTAAGAATAAAATAC
581 CATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATAC
* *
5257590 ATGTGACTCATTCATCAATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTGTAAAAC
646 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC
* * * *
5257655 CGAATTTATCTCTTTTTATGCATCTAGTAGTGTTTACATCA-ACCCAGTCACACTGAAACAA-CA
711 TGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGA-CCAGTCACACCGAAACAATCA
* * *
5257718 CAAACTTTCCTTTTCCATAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACA
775 CAACCTTT-CATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACA
* *
5257783 TCTCCCTCCAGATGATGATTATCCC
839 TCTCCCTCCAAATGATGATTGTCCC
* * * * *
5257808 TGAAACTAGAATAACTTGTAGTTGAAGAAGTAACTACTACTCTATAATTTTTGTGTCCTCCGTAA
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTGTGTCCTCCTTAA
* * *
5257873 TCTTTCACGAGATTTTGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTAT-TCTTTTAATAA
65 TCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
* *
5257937 GTCTATTTGTACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
130 TTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
** * * *
5258002 TACACATGAATGGTGAATT-ATTTGGCATTGATAACGATACTGTAAATCAATTATTTTTCTCC-A
195 TACACATGAATGGTGAATTAATTT-GCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTA
* * * * *
5258065 GACCATGATATCTATAATAAAAAAACAACAATATTAGTAAAAAAAATGGTTTAAATAATGAATAT
259 G-GCATGATATCTGTAAT-AAAAAACAACAATTTTAGT-AAGAAAATGGTTTAATTAATGAATAT
* *
5258130 ATTGAATTACAACATGTTATAAGTTATAATATTATAAATTAATACATGTGGATATAAAATCTTAC
321 ATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTAC
* * *
5258195 TACATTCTTATTTCATATCAATTTTCATAAATATCTTCATCAAAGTCCTCCTGAACCCATTGAAA
386 TACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAA
*
5258260 TTGTGTAGTATTAGTGATAGTTTCACCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTG
451 TTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTG
*
5258325 TTTCAATGTCATCTCTACGTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTACAGAGCACAA
516 TTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAA
* * *
5258389 CATACCAACCCTCATCCATTAGATTGTGACAATAAAAAAACTTGTTTAACTTAAGAAGAAAATAC
581 CATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATAC
*
5258454 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCAGCATTGTAAAAC
646 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC
** * * * *
5258519 CAAATTTATCTCTTTTTATGCCTCGAGTGGTGTTTACATCAGCCCAGTCACACTGAAACAGT-AC
711 TGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCAC
* * * *
5258583 AACCTTTCATTTTGCATAATAATGTAACATAATAATGTCCGTAAGAATTTCATAATAATCTACAT
776 AACCTTTCA-TTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACAT
5258648 CTCCCTCCAAATGATGATTGTCCC
840 CTCCCTCCAAATGATGATTGTCCC
*
5258672 TGGAACTAGCTTAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* *
5258737 CTTTCACGAGATTTCATGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTCAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* * * *
5258802 TCTATTTGGACCCTGTGAAAGTCATTTAACATCTTCACTAGCTTCTCTTCCACTCCAAACCTATT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
* *
5258867 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTTCTGGG
196 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
* *
5258932 CATGATATCTGTAATAAAAAACAACAAGTTTT-GCAAGAAAATGATTTAATTAATGAATATATTG
261 CATGATATCTGTAATAAAAAACAACAA-TTTTAGTAAGAAAATGGTTTAATTAATGAATATATTG
* * * **
5258996 AATGACAACTTGTTATAAGTTATAATATTATAAATTAATACATATGAATATAAAATCTCACCGCA
325 AATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACA
* * *
5259061 TTCTAATGTCATATCAATTGTCATAAATATCTTTATCAACGTCCTCCTAAACCCATTGAAATTGT
390 TTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATTGT
* * * * *
5259126 GTAGAATTAGTGATA-TATTCATCTAAGTCTTGTGCTACAAAAGGTAAAGAATCAAATATTGTTT
455 GTAGTATTAGTGATAGT-TTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTT
* * * * * * *
5259190 CAATGTCATCTCGACTTCCATCACCGATGTCTATCAAGTCTATGGGGTTTTACAAAGTATAACAT
519 CAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACAT
* *
5259255 ACCAACCCTCATCTATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATA
584 ACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATA
* * *
5259320 TGACTCATTCATCAATCGTTGACTAGTATGAATTAATCGAGAGAAATTCACCATTTTAAAACTGA
649 TGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACTGA
* * * * *
5259385 ATTTATCTCTTTTAATGCATCAAGTAGTCTTTACATCAGACCATTCACACCGAAA-AATCACAAC
714 ATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCACAAC
* * *
5259449 CTTTCATTTGCATAATAATATAACCTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCC
779 CTTTCATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCC
5259514 CTCCAAATGATGATTGTCCC
844 CTCCAAATGATGATTGTCCC
* * *
5259534 TGGAACTAGCATAACTTGTAGTTGAAGAATTAACTACTACTCCATAATTTTGCGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* * ** * *
5259599 CGTTCACGAGATTTTGTGTAAAACCTGAAACCATTAATGAGAAAGACATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
5259664 TCTATTTGGACCTTGAGAAAGCCATTTAAC-TCCTTCACTAACTTCTCTTCCACTCCAAACCTAT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACAT-CTTCACTAACTTCTCTTCCACTCCAAACCTAT
* * * * *
5259728 TACACATGAATGGTGAATTAATTTACATTGATCTCGA-ATTCGCATATCACTTA-TTTTCTCTTA
195 TACACATGAATGGTGAATTAATTTGCATTGATGTCGATA-CCGCAAATCACTTATTTTTCTCCTA
* * * * * *
5259791 GGCAAGATATTTGTAATAAAAAACAACAATTTTATTAAGAAAATGGCTTAATTAATTAATAAATT
259 GGCATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATT
* * * *
5259856 GAATAACAACAAGTTATAAGTTATAATTTTATAAATTAATACCA-ATGGATATAAAATTTTACTA
324 GAATGACAACATGTTATAAGTTATAATATTATAAATTAATA-CATATGGATATAAAATCTTACTA
5259920 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCT-CTCGAACCCATTGAAAT
388 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCT-GAACCCATTGAAAT
* * *
5259984 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTACTATAAAAGGTAAAGATTTAGATCTTGT
452 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGT
5260049 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGAGGGTATTACAGAGCACAA
517 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG-GGGTATTACAGAGCACAA
* * * * *
5260114 TATACCAATCCTCATCCATTAGATTGTGACAGTAAAAAAAATTGTTTCACTTAAGAATAAAATAC
581 CATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATAC
* *
5260179 ATGTGACTCATTCATCAATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTGTAAAAC
646 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC
* * * *
5260244 CGAATTTATCTCTTTTTATGCATCTAGTAGTGTTTACATCA-ACCCAGTCACACTGAAACAA-CA
711 TGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGA-CCAGTCACACCGAAACAATCA
* * *
5260307 CAAACTTTCCTTTTCCATAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACA
775 CAACCTTT-CATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACA
* *
5260372 TCTCCCTCCAGATGATGATTATCCC
839 TCTCCCTCCAAATGATGATTGTCCC
* * * * *
5260397 TGAAACTAGAATAACTTGTAGTTGAAGAAGTAACTACTACTCTATAATTTTTGTGTCCTCCGTAA
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTGTGTCCTCCTTAA
* * *
5260462 TCTTTCACGAGATTTTGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTAT-TCTTTTAATAA
65 TCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
* *
5260526 GTCTATTTGTACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
130 TTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
** * * *
5260591 TACACATGAATGGTGAATT-ATTTGGCATTGATAACGATACTGTAAATCATTTATTTTTCTCC-A
195 TACACATGAATGGTGAATTAATTT-GCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTA
* * * *
5260654 GACCATGATATCTGTAATAAAAAAACAACAATATTAGTAAAAAAAATGGTTTAAATAATGAATAT
259 G-GCATGATATCTGTAAT-AAAAAACAACAATTTTAGT-AAGAAAATGGTTTAATTAATGAATAT
* *
5260719 ATTGAATTACAACATGTTATAAGTTATAATATTATAAATTAATACATGTGGATATAAAATCTTAC
321 ATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTAC
* * *
5260784 TACATTCTTATTTCATATCAATTTTCATAAATATCTTCATCAAAGTCCTCCTGAACCCATTGAAA
386 TACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAA
*
5260849 TTGTGTAGTATTAGTGATAGTTTCACCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTG
451 TTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTG
* *
5260914 TTTCAATGTCATCTCTACGTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTATAGAGCACAA
516 TTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAA
* * *
5260978 CATACCAACCCTCATCCATTAGATTGTGACAATAAAAAAACTTGTTTAACTTAAGAAGAAAATAC
581 CATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATAC
*
5261043 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCAGCATTGTAAAAC
646 ATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC
** * * * *
5261108 CAAATTTATCTCTTTTTATGCCTCGAGTGGTGTTTACATCAGCCCAGTCACACTGAAACAGT-AC
711 TGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCAC
* * * *
5261172 AACCTTTCATTTTGCATAATAATGTAACATAATAATGTCCGTAAG-ATTTCATAATAATCTACAT
776 AACCTTTCA-TTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACAT
5261236 CTCCCTCCAAATGATGATTGTCCC
840 CTCCCTCCAAATGATGATTGTCCC
*
5261260 TGGAACTAGCTTAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
*
5261325 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTCAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* * * * *
5261390 TCTATTTGGACCCTGTGAAAGTCATTTAACATCTTCACTAGCTTCGCTTCCACTCCAAACCTATT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
*
5261455 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTGGG
196 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
* *
5261520 CATGATATCTGTAATAAAAAACAACAAGTTTT-GCAAGAAAATGATTTAATTAATGAATATATTG
261 CATGATATCTGTAATAAAAAACAACAA-TTTTAGTAAGAAAATGGTTTAATTAATGAATATATTG
* * * **
5261584 AATGACAACTTGTTATAAGTTATAATATTATAAATTAATACATATGAATATAAAATCTCACCGCA
325 AATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACA
* * * *
5261649 TTCTAATGTCCTATCAATTGTCATAAATATCTTTATCAACGTCCTCCTAAACCCATTGAAATTGT
390 TTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATTGT
* * * * *
5261714 GTAGAATTAGTGATA-TATTCATCTAAGTCTTGTGCTACAAAAGGTAAAGAATCAAATATTGTTT
455 GTAGTATTAGTGATAGT-TTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTT
* * * * * * *
5261778 CAATGTCATCTCGACTTCCATCACCGATGTCTATCAAGTCTATGGGGTTTTACAAAGTATAACAT
519 CAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACAT
* *
5261843 ACCAACCCTCATCTATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATA
584 ACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATA
* *
5261908 TGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGGAATTCACTATTGTAAAACTGA
649 TGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACTGA
* * * *
5261973 ATTTATCTCTTTTTATACCTCGAGTAGTGTTTACATCAGCCCATTCACACC-AAA-ATAGCACAA
714 ATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACA-ATCACAA
*
5262036 CCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATTTACATCT
778 CCTTTCA-TTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCT
* *
5262101 CCCTCTAACTGATGATTGTCCC
842 CCCTCCAAATGATGATTGTCCC
* * *
5262123 TGGAACTAGCATAACTTGTAGTTAAAGAAGTAATTACTACTCCACAATTTAT-TGTCCTCCTTGA
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTT-TGTGTCCTCCTTAA
*
5262187 TCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
65 TCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
* * * *
5262252 TTCTATTTGGACCTTGAGAAAGCCATTTAACACCTTCACAAACTTCTCTTCTACTCTAAACCTAT
130 TTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
* * * *
5262317 TACGCATTAATGGTGAATTAATTTGCATTGATG-CTGATACTGCAAATCACTTATTTTTCTCTTA
195 TACACATGAATGGTGAATTAATTTGCATTGATGTC-GATACCGCAAATCACTTATTTTTCTCCTA
* * * * ***
5262381 GGCATGATATCTGTAGTAAAAAGATAATAATTTTATTAAGAAAACAATTTAATTAATGAATATAT
259 GGCATGATATCTGTAATAAAAA-ACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATAT
* * * * *
5262446 TGAATGACAACATGTTATAAGTTATAATTTTATAAATTAATATATATGGATAAAAAACCTTACTT
323 TGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTA
** * *
5262511 CATTCTTATGTCATATCAATTGAAATAAATATATTCATCAACGTCCTCCCGAACCCATTGAAATT
388 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATT
* *
5262576 GTGTAATATTAGTGATAGTTTCATCTAAGTTTTGTTCTACAAAAGGTAAAGATTCAGATCTTGTT
453 GTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTT
* *
5262641 TCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGCGTTATTACAGAGCACAACA
518 TCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACA
* ** * *
5262706 TACCAACCATCATTTATTGGATTATGATC-GTAGAAAAACTTGTTTCACTTAAGAAGAAAATACA
583 TACCAACCCTCATCCATTGGATTGTGA-CAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACA
* * *
5262770 TATGACTCATTCATCAATCGTGGACCAGTATGAATTAATCGAGAGAAATTCACCATTTTAAAACT
647 TATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACT
* * * * *
5262835 TAATTTATCTCTTTTAATGCATCGAGTAGTCTTTACATCAGACCAATCACACCGAAAC-ATCACA
712 GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCACA
*
5262899 ACCTTTCATTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCT
777 ACCTTTCATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCT
*
5262964 CCCTTCAAATGATGATTGTCCC
842 CCCTCCAAATGATGATTGTCCC
* * *
5262986 TGGAACTAGCAGAACTTGTAGTTGAAGAATTAACTACTACTCCATAATTTTGTGTCCTCCTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* * ** *
5263051 CGTTCACGAGATTTTGTGTAAAACCTGAACCCATAAATGAGAAAGGCATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* * *
5263116 TCTATTTGGACCTTGAGAAAGCCGTGTAAC-TCCTTCAGTAACTTCTCTTCCACTCCAAACCTAT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACAT-CTTCACTAACTTCTCTTCCACTCCAAACCTAT
*
5263180 TACACATGAATGGTGAATTAATTTGTATTGATGTCGA-ATCCGCAAATCACTTATTTTTCTCCTA
195 TACACATGAATGGTGAATTAATTTGCATTGATGTCGATA-CCGCAAATCACTTATTTTTCTCCTA
* * * * * * * * *
5263244 GGTAAGATATTTGTAATAAAAAACAATAATTTCATTAAGAAAACGATTTAATTAATGAAAATATT
259 GGCATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATT
* * * *
5263309 GAATGACAACATGTTATAAGTTATAATTTTATAAATTAATACCTATAGATATAAAATTTTACTAC
324 GAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTAC
*
5263374 ATTCTTATGTCATATCAATTGTCATATATATCTTCATCAACGTCCT-CTCGAACCCATTGAAATT
389 ATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCT-GAACCCATTGAAATT
* * * *
5263438 GTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTACTATAAAAGGTAAAGATTTAGATCTTATT
453 GTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTT
* *
5263503 TCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTGAGGGTATTACAGAGCACAGC
518 TCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG-GGGTATTACAGAGCACAAC
* * ** *
5263568 ATACCAACCCTTATCCATTAGATTGTGACAGTAAAAAAGGTTGTTTCACTTAAGAATAAAATACA
582 ATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACA
* * * *
5263633 TGTGACTCATTCTTCAATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTGTAAAACC
647 TATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACT
5263698 GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCA-ACCTAGTCACACCGAAACAA-CAC
712 GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACC-AGTCACACCGAAACAATCAC
* *
5263761 AACCTTTCTTTTTCCATAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACAT
776 AACCTTTC-ATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACAT
* *
5263826 CTCCATCCAGATGATGATTGTCCC
840 CTCCCTCCAAATGATGATTGTCCC
* * * * *
5263850 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCTATAATTTTTGTATCCTCTTTAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTGTGTCCTCCTTAA
* *
5263915 TCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATT-TTTCTTTTAATAA
65 TCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
* * * * *
5263979 GTCTATTTGTACCTTGAGAAAGCCATTTAAAACCTTGACTAACTTCTCTTCCACTCCAAACCTAT
130 TTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
* * ** * *
5264044 TACACATGAATGGTGAATT-ATTTGGCATTGACGACGATACCATAAATCAATTATATTTCTCCT-
195 TACACATGAATGGTGAATTAATTT-GCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTA
* *
5264107 GACCATGATATCTGTAATAAAAAAACAACAATTTTAGTAACAAAATGGTTTAATTAATGAATATA
259 G-GCATGATATCTGTAAT-AAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATA
* **
5264172 TTGAATGACAACATATTATAAGTTATAATATTATAAATTAATACACGTGGATATAAAATCTTACT
322 TTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACT
* * * *
5264237 ACATTCTGATTTCATATCAATTTTCATAAATATCTTCATCAACGTCCTCCAGAACCCATTGAAAT
387 ACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAAT
* * * *
5264302 TGTGTAGTATTAGTGATAGTTTCACCTAAGTTTTGTGCTACTATAGGTAAAGATTCAAATCTTGT
452 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGT
5264367 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTACAGAGCACAAC
517 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAAC
* * *
5264431 ATACCAACCCTCATCCATTGGATTATGACAGTAAATAAACTTGTTTTACTTAAGAAGAAAATACA
582 ATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACA
* * *
5264496 TATGACTCATTCATCAATCGTTGACCAGAGTAAACTAATCGAGAGAAATTCACCATTGTAAAACT
647 TATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACT
*
5264561 GAATTTATTTCTTTTTATGCCTCGAGTAGTGTTTACATCAG-CCAAGTCACACCGAAACAA-CAC
712 GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACC-AGTCACACCGAAACAATCAC
* * ** *
5264624 ATCCTTTCATTTTTCATAATAATCTAACTTAATAATGTCAATAAGATTTCCATAATAATCTACAT
776 AACCTTTCA-TTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACAT
* *
5264689 CTCCCTCCAAATCATGATTATCCC
840 CTCCCTCCAAATGATGATTGTCCC
* *
5264713 TGGAACTAGCATAAGTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTACTTAAT
1 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
* * *
5264778 ATTTCACGAGATTTCGTGTGGAACTTGAACCCATTAGTGAGAAAGGCATTATATCTTTTAACAAT
66 CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
*
5264843 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCCCTTCCACTCCAAACCTATT
131 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
* * * * *
5264908 ACACATTAATGATGAATTAATTTGCATTGATGGCGATACCGTAAATCACTTATTTTTCTCTTAGG
196 ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
* * * *
5264973 TA-GTATATCTGTAATAAAAAAATCGATAATTTTAGTAAGAAAAGGGTTTAATTAATGAATATAT
261 CATG-ATATCTGTAAT-AAAAAA-CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATAT
* ** *
5265037 TAAATGACAACATGTTATAAGTTATAATATTATAAATTAGCACATGTGGATATAAAATCTTACTA
323 TGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTA
* * * * *
5265102 CATTCTTATTTCATATCAATTTTCATAAATATCTTCATCAACGTTCTCCCGAACCCA-TAAGAAT
388 CATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGA-AAT
* * * *
5265166 TATGCAGTATTAATGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTTAGATCTTGT
452 TGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGT
* * *
5265231 TTCAATGTCATCTTTACTTCCATCCCCAATGTCTATCAAGTCTCTAGTGGTATTACAGAGCACAA
517 TTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAA
5265296 CATACCAACCCTCAT
581 CATACCAACCCTCAT
5265311 ACATATGAAT
Statistics
Matches: 8275, Mismatches: 852, Indels: 197
0.89 0.09 0.02
Matches are distributed among these distances:
858 5 0.00
859 357 0.04
860 114 0.01
861 858 0.10
862 1770 0.21
863 2488 0.30
864 1795 0.22
865 365 0.04
866 519 0.06
867 4 0.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (863 bp):
TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCCTCCTTAAT
CTTTCACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
ACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTAGG
CATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGA
ATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACAT
TCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCTGAACCCATTGAAATTGTG
TAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCA
ATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATAC
CAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATG
ACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACTGAAT
TTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGACCAGTCACACCGAAACAATCACAACCT
TTCATTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCT
CCAAATGATGATTGTCCC
Found at i:5267441 original size:863 final size:864
Alignment explanation
Indices: 5265309--5277144 Score: 16363
Period size: 863 Copynumber: 13.8 Consensus size: 864
5265299 ACCAACCCTC
*
5265309 ATACATATGAATCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * * * *
5265374 AAACCT-AATTTATCTCTTTTAATGCTTCGAGCAGTGTTTACAACATG-CCAGACACACCAAAAC
66 AAA-CTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCA-GCCCAGTCACACCGAAAC
* *
5265437 ATCACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTTCATAATAATC
129 AACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATC
* * ** *
5265502 TATATCTCCCTCCAAATTATGATTGTCCCTGGAACTATAATAACTTGTGGTTGAAGAAGTAACTA
194 TACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTA
* * * * **
5265567 CTACTCCATAATTTTGTATCCTCCTTAATCGTTCACGAGATTTTATGTGGATTC-GAACCCATTA
259 CTACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTA
* * *
5265631 ATGAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGACAAAGCCATTTATCATCTTC
324 ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTC
*
5265696 ACTAACTTCTCTTCCACTCC--A---A--AC-C--------T--ATTAATTTGCATTGATGTTGA
389 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
* * * * * *
5265743 TTCCACAAATCACTTATTTTTCTACTGGGCATGATATATGTAATAAAAAAACAACAATTTTAGTA
454 TACCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTA
* *
5265808 AGAAATCGGTTTAATTAATGAATATATTGAATGAAAACATGTTATAAGTTATAATATTATAAATT
519 AGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATT
* * * *
5265873 AATACTTATGGATATAAAATCATACTGCATTCTTATGTCATATCAATTGTCATAATTATCTTCAT
584 AATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCAT
* *
5265938 CAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAATGATAGTTTCATCTAAGTTTTATGCT
649 CAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCT
* * ** *
5266003 ATAAAAGTTAAAGATTTAGATCTTGTTTCAATGTTGTCTTTACTTCCATCCCC-AGTGTCTATCA
714 ACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGA-TGTCTATCA
* * *
5266067 AGTCTCTGGGGGTATTACAGAGAACAACATACCAACCCTCATCCATTAGATTATGACAATAAAAA
778 AGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAA
*
5266132 AACTTGTTTAACTTAAGAAGAAA
842 AACTTGTTTCACTTAAGAAGAAA
*
5266155 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCAGCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * *
5266220 AAACCGAATTTATCTCTTTTTATGCCTCGAGTGGTGTTTACATCAGCCCAGTCACACTGAAACAA
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
* * * * *
5266285 TACAACCTTTCATTTTCCATAATAATGT--C--CATAA-------AA-ATTTCC-GAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * * * *
5266337 GATCTCCCTACAAATGATGATTCTCCTTGGAACTAGCTTAACTTGTAGTTGAAGAAGTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
*
5266402 TCTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
*
5266467 GAGAAAGGCATTATATCTTTCAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
326 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
* *
5266532 TAGCTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATTTCGATA
391 TAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATA
* * * *
5266597 CCTCAAATCACTTATTTTTCTTCTGGGCATCATATTTGTAAT-AAAAAACAACAATTTTTGCAAG
456 CCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTAAG
** * *
5266661 AAAACAATTTAATTAATGAATATAATGAATGACAACTTGTTATAAGTTATAATATTATAAATTAA
521 AAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAA
* * ** * *
5266726 TACATATGAATATAAAATCTCACCGCATTCTAATGTCATATCTAA-TGTCATAAATATCTTTATC
586 TACATATGGATATAAAATCTTACTACATTCTTATGTCATATC-AATTGTCATAAATATCTTCATC
* * * ** *
5266790 AACGTCCTCCTAAACCCATTGAAATTATGTAGAATTAGTGATAAATTCATCTAAGTCTTGTGCTA
650 AACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTA
* * * * * *
5266855 CAAAAGGTAAAGAATCAAATATTGTTTCAATGTCATCTCGACTTCCATCACCGATGTCTATCAAG
715 CAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAG
* * * * *
5266920 TCTCTGGGGTTTTACAAAGTATAACATACCAACCCTCATCTATTGGATTATGACAGTAAAAAAAC
780 TCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAAC
5266985 TTGTTTCACTTAAGAAGAAA
845 TTGTTTCACTTAAGAAGAAA
* * * *
5267005 ATACGTATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGGACTTCACTATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * *
5267070 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCATTCACACCAAAATAG
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
*
5267135 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATTTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * * * *
5267200 CATCTCCCTCTAACTAATGATTGTCCCTGGAACTAGCATAACTTGTAGTTAAAGAAGTAATTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* *
5267265 ACTCCACAATTTAT-TGTCCTCCTTGATCTTTCACGAGATTTCATGTGTAACCTGAACCCATTAA
261 ACTCCACAATTT-TGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAA
*
5267329 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACACCTTCA
325 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
* * * * *
5267394 CAAACTTCTCTTCTACTCCAAACCTATTACGCATTAATGGTGAATTAATTTGCATTGATGTTGAT
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * * *
5267459 A-CTGCAAATCACTTATTTTTC-TCTTAGGCATGATATCTATAGTAAAAAGATAATAATTTTAT-
455 ACCT-CAAATCACTTATTTTTCTTC-TAGGCATGATATCTGTAATAAAAAAACAACAATTTT-TG
* *
5267521 AAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATTTTATAAA
517 TAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
* * * * * *
5267586 TTAATATATATGGATAAAAAACCTTACTTCATTCTTATGTCATATCAATTGTAATAAATATATTC
582 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
* * *
5267651 ATCAACGTCCTCCCGAACCCATTGAAATTGTGTAATATTAGTGATAGTTTCATCTAAGATTTGTT
647 ATCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTG-T
*
5267716 G-TACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
711 GCTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
* * * **
5267780 CAAGTCTCTGCGTTATTACAGAGCACAACATACCAACCATCATTTATTGGATTATGATC-GTAAA
776 CAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGA-CAGT-AA
5267844 AAAAACTTGTTTCACTTAAGAAGAAA
839 AAAAACTTGTTTCACTTAAGAAGAAA
* * * *
5267870 ATACATATGACTCATTCATCAATCGTGGACCATTATGAATTAATCGAGAGAAATTCACCATTTTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * * *
5267935 AAACTGAATTTATCTCTTTTAATGCATCGAGTAGTCTTTACATCAGACCAGTCACACCGAAACAT
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
*
5268000 CACAACCTTTCA-TTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * *
5268064 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCAGAACTTGTAGTTGAAAAATTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * ** **
5268129 ACTCCATAATTTTGTGTCCTCCTTAATCGTTCACGAGATTTTGTGTAAAACCTGAACCCATTAAT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
*
5268194 GAGAAAGGAATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAAC-TCCTTCA
326 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACAT-CTTCA
* * *
5268258 GTAACTTCTCTTCCACTCAAAACCTATTACACATGAATGGTGAATTAATTTGTATTGATGTCGA-
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * * * *
5268322 ATCCGCAAATAACTTATTTTTCTCCTAGGCAAGATATTTGTAAT-AAAAAACAATAATTTTAT-T
455 A-CCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTT-TGT
* * *
5268385 AAGAAAACGATTTAATTAATGAAAATATTGAATGACAACATGTTATAAGTTATAATTTTATAAAT
518 AAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * * *
5268450 TAATACCTATAGATATAAAATTTTACTACATTCTTATGTCATATCAATTGTCATATATATCTTCA
583 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCA
*
5268515 TCAACGTCCT-CTCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTA
648 TCAACGTCCTCCT-GAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
*
5268579 CTATAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
712 CTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
* * * * *
5268644 AAGTCTCTAAGGGTATTACAGAGCACAGCATACCAACCCTTATCCATTAGATTGTGACAGTAAAA
777 AAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAA
*
5268709 AAACTTGTTTCACTTAAGAATAAA
841 AAACTTGTTTCACTTAAGAAGAAA
* * * *
5268733 ATAAATGTGACTCATTCTTCAATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * *
5268798 AAA-TCGAATTTATCTCTTTTT-TGCCTCGAGTAGTGTTTATATCAACCTAGTCACACCGAAACA
66 AAACT-GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* *
5268861 ACACAACCTTTCTTTTTCCATAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCT
130 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * *
5268926 ACATCTCCCTCCAGATGATGATTGTCCCTAGAACTAGAATAACTTGTAGTTGAAGAAGTAACTAC
195 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
* * * * * * * *
5268991 AACTCTATACTTTTTGTGTCCTCTTTATTCTTTCACGAGATTTCGTGTGCAACCTGAACCCATTA
260 TACTCCACA-ATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTA
* * * *
5269056 ATGAGAAAGGCATT-TTTCTTTTAATAAGTCTATTTGTACCTTGAGAAAGCCATTTAACATCTTC
324 ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTC
* *
5269120 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATT-ATTTGGCATTGACGACG
389 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTT-GCATTGATGTCG
* * * * * *
5269184 ATACCGT-AAATGAATTATATTTCTCCT-GACCATGATATCTGTAATAAAAAAACAACAATTTTA
453 ATACC-TCAAATCACTTATTTTTCTTCTAG-GCATGATATCTGTAATAAAAAAACAACAATTTTT
*
5269247 GTAA-ACAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATA
516 GTAAGA-AAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATA
** * * * * *
5269311 AATTAATACACGTGGATATAAAATCTTACTACATTCTGATTTTATATCAGTTTTCATAAATATCT
580 AATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCT
* * *
5269376 TCATCAACGTCTTCCAGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCACCTAAGTTTTG
645 TCATCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTG
* * *
5269441 TGCTACAATAGGTAAAGATTCAAATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTA
710 TGCTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTA
*
5269506 TCAAGTCTCT-GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAA
775 TCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAA
*
5269570 TAAACTTGTTTCACTTAAGAAGAAA
840 AAAACTTGTTTCACTTAAGAAGAAA
* *
5269595 ATACATATGACTCATTCATCAATCGTTGACCAGAGTAAATTAATCGAGAGAAATTCACCA--GTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* *
5269658 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCAAGTCACACCGAAACAG
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
* * * *
5269723 CACATCCTTTCATTTTTCATAATAATCTAACTTAATAATGTCCATAAGATTTCCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * *
5269788 CATCTCCCTCCAAATCATGATTATCCCTGGAACTAGCATAAGTTGTAGTTGAAGAAGTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * *
5269853 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACTTGAACCCATTAGT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
5269918 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
326 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
* *
5269983 TAACTTC-CATTCCACTCCAAACCTATTACACATTAATGATGAATTAATTTGCATTGATGTCGAT
391 TAACTTCTC-TTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * *
5270047 ACCGT-AAATCACTTATTTTTC-TCTTAGGCAGGATATCTGTAATAAAAAAATCGATAATTTTAG
455 ACC-TCAAATCACTTATTTTTCTTC-TAGGCATGATATCTGTAATAAAAAAA-CAACAATTTTTG
* * *
5270110 TAAGAAAAGGGTTTAATTAATGAATATATTAAATGACAACATGTTATAAGTTATAATATTATAAT
517 TAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
** * * * *
5270175 TTAGCACATGTGGAAATAAAATCTTACTACATTCTTATTTCATATCAATTTTCATAAATATCTTC
582 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
* * * * * * *
5270240 ATCAACGTTCTCCCGAACCCA-TAAGAATTATGCAGTATTAATGATAGTTTGATCTAAGTTTTGT
647 ATCAACGTCCTCCTGAACCCATTGA-AATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGT
* * *
5270304 GCTAAAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTTTACTTCCATCCCCAATGTCTAT
711 GCTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
* *
5270369 CAAGTCTCTAGTGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAA
776 CAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAA
*
5270434 AAAACTTGTTTCACATAAGAAGAAA
840 AAAACTTGTTTCACTTAAGAAGAAA
*
5270459 ATACATATGAATCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
** * * * ** *
5270524 AAACCT-AATTTATCTCTTTCAATGCTTCGAGCAGTGTTTACATCAGGCCAAACACACCAAAACA
66 AAA-CTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* * *
5270588 TCACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTATGAATTTCATAATAATCT
130 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * *
5270653 ACATCTCCCTCCAAATTATGATTGTCCCTGGAACTAGCAAAACTTGTGGTTGAAGAAGTAACTAC
195 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
* * * * **
5270718 TACTCCATAATTTTGTATCCTCCTTAATCGTTCACGAGATTTTATGTGGATTC-GAACCCATTAA
260 TACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAA
* *
5270782 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGACAAAGCCATTTATCATCTTCA
325 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
*
5270847 CTAACTTCTCTTCCACTCC--A---A--AC-C--------T--ATTAATTTGCATTGATGTTGAT
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * * * * * *
5270894 TCCACAAATCACTTATTTTTTTTCCTGGGCATGATATATGTACTAAAAAAACAACAATATTAGTA
455 ACCTCAAATCACTTATTTTTCTT-CTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTA
* *
5270959 AGAAATCGGTTTAATTAATGAATATATTGAATGAAAACATGTTATAAGTTATAATATTATAAATT
519 AGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATT
* * *
5271024 AATACTTATGGATATAAAATCTTA-T---TGC--AT-TC-T-T--A-TGTCATAATTATCTTCAT
584 AATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCAT
** *
5271077 CAACGTTTTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTATGCT
649 CAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCT
* * * * *
5271142 ATAAAAGTTAAAGATTTAGATCTTGTTTCAATGTCGTCTTTACTTCCATCCCCAATGTCTATCAA
714 ACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAA
* * * * *
5271207 GTCTCTGGGTGTATTACAGAGAACAACATACCAACCCTCATTCATTAGATTGTGACAATAAAAAA
779 GTCTCTGGG-GTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAA
*
5271272 ACTTGTTTAACTTAAGAAGAAA
843 ACTTGTTTCACTTAAGAAGAAA
*
5271294 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCAGCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * *
5271359 AAACCGAATTTATCTCTTTTTATGCCTCGAGTGGTGTTTACATCAGCCCAGTCACACTGAAACAA
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
* *
5271424 TACAACCTTTCATTTT-C--------C--A--TAATAATGTCCGTAAGAATTTCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * * *
5271476 GATCTCCCTACAAATGATGATTGTCCTTGGAACTAGCTTAACTTGTAGTTGAAGAAGTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * *
5271541 TCTCCACAATTTTGTGTCCTCCTTAATCTTTCACGATATTTCATGTGGAACCTTAACCCATTAAT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
5271606 GAGAAAGGCATTATAT-TTTTCAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
326 GAGAAAGGCATTATATCTTTT-AACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
*
5271670 CTAGCTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * *
5271735 ACCTCAAATCA-TTAATTTTTCTTATAGGCATCATATATGTAAT-AAAAAACAACAATTTTTGCA
455 ACCTCAAATCACTT-ATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTA
** *
5271798 AGAAAACATTTTAATTAATGAATATATTGAATGACAACTTGTTATAAGTTATAATATTATAAATT
519 AGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATT
* * * * *
5271863 AATACATATGAATATAAAATCTCACTGCATTCTAATGTCATATCAATTGTCATAAATATCTTTAT
584 AATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCAT
* * * *
5271928 CAACGTCCTCCTAAACCCATTGAAATTGTGTAGAATTAGTGATAGATTCATCTAAGTCTTGTGCT
649 CAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCT
* * * * * *
5271993 ACAAAAGGTAAAGA-ATCGAATATTGTTTCAATGTCATCTCGACTTCCATCACCGATGTGTATCA
714 ACAAAAGGTAAAGATTTAG-ATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* * * * *
5272057 AGTCTCTGGGGTTTTACAAAGTATAACATACCAACCCTCATCTATTGGATTATGACAGTAAAAAA
778 AGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAA
5272122 ACTTGTTTCACTTAAGAAGAAA
843 ACTTGTTTCACTTAAGAAGAAA
* * * *
5272144 ATACATATGACTCATTCATAAATCGTTGACCAGTGTGAATTAATCGAGAGGACTTCACTATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * *
5272209 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCATTCACACCAAAATAG
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
*
5272274 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTTCGTAAGAATTCCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * * *
5272339 CATCTCCCTCTAACTGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTAAAGAAGTAATTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * **
5272404 ACTCCACAATTTTTTGTCCTCCTTGATCTTTCACGAGATTTCATGTCAAACCTGAACCCATTAAT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
* * ** * *
5272469 GAGAAAGCCATTATATCTTTTAAAAATT-TATTTAAACCTTGAGGAAGCCATTTAACACCTTCAC
326 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
* * * *
5272533 AAACTTCTCTTCTACTCCAAACCTATTACGCATTAATGGTGAATTAATTTGCATTGATGTCGATA
391 TAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATA
* * * *
5272598 -CTGCAAATCACTTATTTTTC-TCTTAGGCATGATATCTGTAGTAAAAAGATAATAATTTTAT-T
456 CCT-CAAATCACTTATTTTTCTTC-TAGGCATGATATCTGTAATAAAAAAACAACAATTTT-TGT
*
5272660 AAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATTTTATAAAT
518 AAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * * * * *
5272725 TAATATATATGGATAAAAAACCTTACTACATTCTTATGTTATATCAATTGTAATAAATATATTCA
583 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCA
* * * * *
5272790 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAATATTAGTGATAGTTTTATTTAAGTTTTGTTC
648 TCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* *
5272855 TAAAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
713 TACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* *
5272920 AGTCTCTGGGTTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACCA-TAGAAA
778 AGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGA-CAGTAAAAA
5272984 AACTTGTTTCACTTAAGAAGAAA
842 AACTTGTTTCACTTAAGAAGAAA
* * * *
5273007 ATACATATGACTCATTCATCAATCGTGGACCAGTATGAATTAATCGAGAGAAATTAACCATTTTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * *
5273072 AAACTGAATTTATCTCTTTTAATGCATCGAGTAGTCTTTACATCAG-ACATGTCACACCGAAACA
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA-GTCACACCGAAACA
* *
5273136 TCACAACCTTTCA-TTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
130 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * *
5273200 ACATCTCCCTCTAAATGATGATTGTCCCTGGAACTAGCAGAACTTGTAGTTGAAGAATTAACTAC
195 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
* * ** **
5273265 TACTCCATAATTTTGTGTCCTCCTTAATCGTTCACGAGATTTTGTGTAAAACCTGAACCCATTAA
260 TACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAA
*
5273330 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAAC-TCCTTC
325 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACAT-CTTC
* *
5273394 AGTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTAAATTAATTTGCATTGATGTCGA
389 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
* * * * *
5273459 -ATCCGCAAATCACTTATTTTTCTCCTAGGCAAGATATTTGTAAT-AAAAAACAACAATTCTAT-
454 TA-CCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATT-TTTG
* * * * *
5273521 TATGAAAACGATTTAATTAATGAATATATTGAATGACAACATGTTATAAGATATACTTTTATAAA
517 TAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
* * * * *
5273586 TTAATACCTATAGATATAAAATTTTACTACATTCTTATGTCATATCAATTTTCATATATATCTTC
582 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
*
5273651 ATTAACGTCCT-CTCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGT
647 ATCAACGTCCTCCT-GAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGT
* *
5273715 ACTATAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
711 GCTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
* * * *
5273780 CAAGTCTCTGAGGGTATTACAGAGCACAGCATATCAACCCTCATCCATTAGATTGTGACAGTAAA
776 CAAGTCTCTG-GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAA
*
5273845 AAAACTTGTTTCACTTAAGAATAAA
840 AAAACTTGTTTCACTTAAGAAGAAA
* * *
5273870 ATACATGTGACTCATTCATCAATTGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * * *
5273935 AAACCGAATTTATCTCTTTTTATACCTTGAGTAGTGTTTACATTAACCCAGTCACACCGAAACAA
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
* *
5274000 CACAACCTTTCCTTTTCCATAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
*
5274065 CATCTCCCTCCAGATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * ** *
5274130 ACTCTATAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTTGTGTGGAACCTGAACCCACTAA
261 ACTCCACAA-TTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAA
* * *
5274195 TGAGAAAGGCATTAT-TCTTTTAATAAGTCTATTTGTACCTTGAGAAAGCCATTTAACATCTTCA
325 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
* *
5274259 CTAACTTCTCTTCCACTCCAAACCTATTACACATTAATGGTGAATT-ATTTGGCATTGATGACGA
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTT-GCATTGATGTCGA
* * * * * *
5274323 TACCGT-AAATCAATTATTTTTCTCCT-GACCAAGATATCTGTAATAAAAAAACAATAATTTTAG
454 TACC-TCAAATCACTTATTTTTCTTCTAG-GCATGATATCTGTAATAAAAAAACAACAATTTTTG
* **
5274386 TAAAAAAATTGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
517 TAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
** * * *
5274451 TTAATACACGTGGATATAAAATCTTACTACATTCTGATTTCATATCAATTTTCATAAATATCTTC
582 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
*
5274516 ATCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCACCTAAGTTTTGTG
647 ATCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
* * *
5274581 CTACAATAGGTAAAGATTCAAATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
712 CTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
* *
5274646 AAGTCTCT-GGGTATTACAGAGCACAACATACCGACCCTCATCCATTGGATTATGACAGTAAATA
777 AAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAA
5274710 AACTTGTTTCACTTAAGAAGAAA
842 AACTTGTTTCACTTAAGAAGAAA
* *
5274733 ATACATATGACTCATTCATCAATCGTTGACCAGAGTAAATTAATCGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * *
5274798 AAACTAAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTATATCAGCCCAGTCACACCGAAATAG
66 AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
* ** * *
5274863 CACATCCTTTTGTTTTCCATAATAATCTAACTTAATAATGTCCATAAGATTTCCATAATAATCTA
131 CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
* * * *
5274928 CGTCTCACTCCAAATCATGATTATCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
196 CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
* * * *
5274993 ACTCCACAATTTTGTGTCCTCCTTAATCATTCACGAGATTTCGTGTGGAACTTGAACCCATTAGT
261 ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
* *
5275058 GAGAAAGGCATTATACCTTTTATCAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
326 GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
* * *
5275123 TAACTTCTCTTCCACTCTAAACCTATTACATATGAATGGTTAATTAATTTGCATTGATGTCGATA
391 TAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATA
* * *
5275188 CCGT-AAATCACTTATTTTTC-TCTTAGGCAGGATATCTGTAATAAAAAAATCGATAATTTTTGT
456 CC-TCAAATCACTTATTTTTCTTC-TAGGCATGATATCTGTAATAAAAAAA-CAACAATTTTTGT
* *
5275251 AAGAAAAGGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATCATAAAT
518 AAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * * *
5275316 TAGTACATGTGGATATAAAATCTTACTACATTCTTATTTCATATCAATTTTCATAAATATCTTCA
583 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCA
* ** *
5275381 TCAACGCCCTCCCCAACCCTTTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
648 TCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* *
5275446 TACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTTTACTTCCATCCCCAATGTCTATCA
713 TACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* * * *
5275511 TGTCTCTAGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATTGTGATAGTAAAAA
778 AGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAA
5275576 AACTTGTTTCACTTAAGAAGAAA
842 AACTTGTTTCACTTAAGAAGAAA
*
5275599 ATACATATGAATCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * * * *
5275664 AAACCT-AATTTATCTCTTTTAATGCTTCGAGCAGTGTTTACATCAGGCCAGACACACCAAAACA
66 AAA-CTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* * *
5275728 GCACAACCTTTCATTTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTTCATAATAATCT
130 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * * * *
5275793 ACATCTCCCTCCAAATTATGATTGTCCCTAGAACTAGAATAAGTTGTGGTTGAAGAAGTAACTAC
195 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
* * * * **
5275858 TACTCCATAATTTTGTATCCTCCTTAATCGTTCACGAGATTTTATGTGGATTC-GAACCCATTAA
260 TACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAA
* * *
5275922 TGAGAAAGGCATTATATCTTTTAATAATTCTATTTGGACCTTGACAAAGCCATTTATCATCTTCA
325 TGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCA
*
5275987 CTAACTTCTCTTCCACTCC--A---A--AC-C--------T--ATTAATTTGCATTGATGTTGAT
390 CTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGAT
* * * * * *
5276034 TCCACAAATCACTTATTTTTCTCCTAGACATGATATATGTAATAAAAAAAAAACAACAATTTTAG
455 ACCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAAT---AAAAAAACAACAATTTTTG
* *
5276099 TAAGAAATCGGTTTAATTAATGAATATATTGAATGAAAACATGTTATAAGTTATAATATTATAAA
517 TAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
* * * *
5276164 TTAATACTTATGGATATAAAATCTTACTGCATTCTTATGTCATATCAATTATCATAATTATCTTC
582 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
* *
5276229 ATCAACGTCCTCCTGAACCCATTAAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTATG
647 ATCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
* * * * *
5276294 CTATAAAAGTTAAAGATTTAGATCTTGTTTCAATGTCGTCTTTACTTCCATCCCCAATGTCTATC
712 CTACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
* * *
5276359 AAGTCTCTGGGGGTATTACAGAGTACAACATACCAACCCTCATCCATTAGATTATGACAATAAAA
777 AAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAA
*
5276424 AAACTTGTTTAACTTAAGAAGAAA
841 AAACTTGTTTCACTTAAGAAGAAA
* *
5276448 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCAGCATTTTA
1 ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
* * * * * *
5276513 ATA-TCGAATTTATCTCTTTTTATTCATCGAGTGGTGTTTACATCAACCCAGTCACACTGAAACA
66 AAACT-GAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* * * *
5276577 ATACAACCTTTAATTTTCC------A--TAA--TAAT--T-TCCTTAAGAATTTCATAATAATCT
130 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
*
5276629 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCTTAACTTGTAGTTGAAGAAGTAACTAC
195 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
*
5276694 TACTCCACAATTTTGTGTCCTCCTTAATCTTTC-CTGAGATTTCGTGTGGAACCTGAACCCATTA
260 TACTCCACAATTTTGTGTCCTCCTTAATCTTTCAC-GAGATTTCATGTGGAACCTGAACCCATTA
* *
5276758 ATGAGAAAGGCATTATATCTATCAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTC
324 ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTC
*
5276823 ACTAGCTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
389 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
* * *
5276888 TACCGCAAATCACTTATTTTTCTTCTGGGCATGATATTTGTAATAAAAAAACAACAATTTTTGTA
454 TACCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTA
* ** *
5276953 AAAAAACAATTTAATTAATGAATATATTGAATGACAACTTGTTATAAGTTATAATATTATAAATT
519 AGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATT
* * * *
5277018 AATACATATGAATATAAAATCTCACTACATTCTAATGTCATATCAATTGTCATAAATATCTTTAT
584 AATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCAT
* * * * *
5277083 CAACGTCCTCCTAAACCCATTGAAATTGTGTAGAATTAGTGATAGATCCATCTAAGTCTTGT
649 CAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGT
5277145 TGTTGAAACA
Statistics
Matches: 9755, Mismatches: 1036, Indels: 392
0.87 0.09 0.04
Matches are distributed among these distances:
822 138 0.01
823 86 0.01
824 1 0.00
825 1 0.00
826 1 0.00
828 1 0.00
830 2 0.00
831 1 0.00
833 110 0.01
834 98 0.01
835 341 0.03
836 130 0.01
837 90 0.01
838 1 0.00
839 106 0.01
840 21 0.00
841 45 0.00
842 6 0.00
843 5 0.00
844 3 0.00
845 5 0.00
846 143 0.01
847 185 0.02
848 25 0.00
849 462 0.05
850 427 0.04
851 381 0.04
852 253 0.03
853 1 0.00
854 4 0.00
855 58 0.01
857 1 0.00
858 4 0.00
859 1 0.00
860 89 0.01
861 313 0.03
862 1088 0.11
863 2272 0.23
864 1620 0.17
865 662 0.07
866 570 0.06
867 4 0.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (864 bp):
ATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTA
AAACTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAA
CACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTA
CATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACT
ACTCCACAATTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATTAAT
GAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCAC
TAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATA
CCTCAAATCACTTATTTTTCTTCTAGGCATGATATCTGTAATAAAAAAACAACAATTTTTGTAAG
AAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAA
TACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCA
ACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTAC
AAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGT
CTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACT
TGTTTCACTTAAGAAGAAA
Found at i:5277553 original size:74 final size:75
Alignment explanation
Indices: 5277372--5277576 Score: 254
Period size: 75 Copynumber: 2.7 Consensus size: 75
5277362 CAAAGCCAAA
* * * **
5277372 AATTCCAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACGGATT-CCCCCTGAATGGT
1 AATTCCAGA-TGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
5277436 TTGGCTCCGAG
65 TTGGCTCCGAG
* *
5277447 ATTTCCAGAATGCTCGGAGGGAACTGATT-CCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
* *
5277511 TTTGTTCCGAG
65 TTGGCTCCGAG
* * *
5277522 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCC
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCC
5277577 TTGTACAACA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
74 20 0.18
75 85 0.76
76 7 0.06
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (75 bp):
AATTCCAGATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
TGGCTCCGAG
Found at i:5280505 original size:21 final size:21
Alignment explanation
Indices: 5280479--5280518 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
5280469 GGAGACTTAT
*
5280479 TAAGAGGTTTGCCTAAGCTAG
1 TAAGAGGGTTGCCTAAGCTAG
5280500 TAAGAGGGTTGCCTAAGCT
1 TAAGAGGGTTGCCTAAGCT
5280519 TAAATTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (21 bp):
TAAGAGGGTTGCCTAAGCTAG
Found at i:5286070 original size:73 final size:73
Alignment explanation
Indices: 5285932--5286133 Score: 273
Period size: 73 Copynumber: 2.8 Consensus size: 73
5285922 AAAAGCCAAA
* * * **
5285932 AATTCCAGATTGCTCAGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTGAATGGTTT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
5285997 GGCTCCGAG
66 -GCTCCGAG
*
5286006 -ATTTCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
*
5286070 GTTCCGAG
66 GCTCCGAG
* * * *
5286078 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGAT-TCCCCCATAGGAGGAACCGATTCCCCCT
5286134 TGTACAACGG
Statistics
Matches: 114, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
72 7 0.06
73 101 0.89
74 6 0.05
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (73 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTTT
GCTCCGAG
Found at i:5289310 original size:866 final size:864
Alignment explanation
Indices: 5287427--5289770 Score: 3084
Period size: 846 Copynumber: 2.7 Consensus size: 864
5287417 AATGGTGAAT
* * * * * * *
5287427 TAATATAATAAATTAATATATATGGATATAAAACCTGAATATATTCTCATGTCATATCAATTGTC
1 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* *
5287492 ATTAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAATTTCAT
66 ATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
* *
5287557 CTAAGTTTTGTGCTATAAAAGGTAAAGATTCAGATCTTGTTTCAATGACATCTCTACTTCCATCC
131 CTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
* * ** * * * * * *
5287622 CCAATGTATATCAAGTCTCTGGGGGTATTGTATAGGATAACATACCAAACCTCATCCTTTTGATT
196 CCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATT
* * *
5287687 GTGACCGTAAAAAAACTTGTTTCACTTAAGAAGAAAAGATATATGACTCATTCATCAATCGTTGA
260 GTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGA
** * * * *
5287752 TGAGTGTGAATTAATCGAAAGAAATTCACCATTGTAAAACTGAATTAATCTCATTTT-ATGCCTT
325 CCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTC-TTTTCATGCCTC
** * ** * * * *
5287816 GAGTAGTAATTATATTTGGCCAGTCACACCGAAACATCACAATCTTTCATTTTCAATAATAATCT
389 GAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATCT
* * * *
5287881 AACTTAATAATGTCCGTAAGAACTCTATAATAATCTAAATCTCCCTCCAAATGATGATTGTCCCT
454 AACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCT
*
5287946 TGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTGTGTCCTCCTTAAT
519 GGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAAT
* * * *
5288010 CGTTCGCGAGATTTTGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATAGCTTTTAACAAT
584 CTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* * * **
5288075 TCTATTTGGACCTTAATAAAGCGATTTAACATCTTTGCTAACTTCTCTTCCACTCC--A---A--
648 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
* * *
5288133 AC-C--------T--ATTAATTTGCATTGATGTCGATACCGCAAATCACATATTTTTCTCCTGGG
713 ACACATGAATGGTGAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTTGG
* **
5288187 CATGACATCTGTAATAAAAAA-CAACAATTTTAGTAAGAAATCAGTTTAATTAATGAATATATTG
778 CATGATATCTGTAATAAAAAAGCAACAATTTTAGTAAGAAAAAAGTTTAATTAATGAATATATTG
* * *
5288251 AATAAAAACAAGTTATAAGTTA
843 AATGACAACATGTTATAAGTTA
*
5288273 TAATATTATAAATTAATACCTATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
1 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* *
5288338 ATAAATATCTTCATCAATGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAATGATAGTTTCAT
66 ATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
* *
5288403 CTAAGTTTTGTGCTACAAAAGGTAAAGATTCAAATCTTGTTTCAATGTCATCTCTACTTCCATCA
131 CTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
** * *
5288468 TTGAT-TCTATCAAGTCTCTGGGGGTATTACAGAGCACAACATACCGACCCTCATCAATTGGATT
196 CCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATT
* * *
5288532 GTGACAGTAAAAAAAACTTATTTCACATAAGAAGAAAATACATATGA-TTATTTCATCAATCGTT
260 GTGACAGT-AAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCA-TTCATCAATCGTT
* * * * *
5288596 GACTAGTGTGAATTAATCAAGAGAAATTCACCATTGTAAAACCAAATTTATCTCTTTTTATACCT
323 GACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCT
* * * * *
5288661 CAAGTAGTGTTTACATCAGCCTAGTCACACCGAAACAACACAACCTTTCGTTTTCCGTAATAATT
388 CGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATC
* *
5288726 TAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCC
453 TAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCC
* * * * * *
5288791 TGGAACTAGCATTACTTGTAGTTAAAGAAATAACTATTACACCACAATTTTTGTGCCCTCCTTAA
518 TGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAA
* * * *
5288856 TCTTTCACGAGAATTCGTGTGGAAACTGAACCCGTTAATGAGAAAGGCATTATATCTTTTAACTA
583 TCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTTTTAACAA
* *
5288921 TTCTATTTGGACTTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACATAT
647 TTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTAT
* *
5288986 TACACATGAATGGTGAATTAATTTGCATTGATTTCGATACCGCAAATCACTTATTTTTCTCCTTG
712 TACACATGAATGGTGAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTTG
* * * * * *
5289051 ACAAGATATATGTAATAAAAAAGAAATAATTTTAGTAGGAAAAAAGTTTAATTAATGAATATATT
777 GCATGATATCTGTAATAAAAAAGCAACAATTTTAGTAAGAAAAAAGTTTAATTAATGAATATATT
5289116 GAATGACAACATGTTATAAGTTA
842 GAATGACAACATGTTATAAGTTA
* ** * *
5289139 TAATTTTATAAATTAATACATATGGATATAAAATCACACCACATTCTTATGCCATATCAATTGTC
1 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* *
5289204 ATAAATATCTTGATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCAT
66 ATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
*
5289269 CTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
131 CTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
* * * * * *
5289334 CCGATGTCTATCAAGTCTCTTGGGTATTACAGAGCACAGA-AGACCAAACCTTATCTATTGAATT
196 CCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACA-ACATACCAACCCTCATCCATTGGATT
* *
5289398 ATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTTATCAATCGTTGA
260 GTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGA
* * * * *
5289462 CCAGTGCGAATTAATCGAGAGAAATTCATCTTTGTAAAACCGAATTTATCGCTTTTTATGCCTCG
325 CCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCG
* * ** * **
5289527 CGTAGTGTTTACATCAGCTCAGTCACACTAAAACCACACAACCCTTT-ATTTTCTGTAATAATCT
390 AGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAA-CCTTTCATTTTCCATAATAATCT
* * * * *
5289591 AACTTAATAATGTCCGTAAGAATTCCATAATAATATACGTCTCCTTCCAAATGATGATTGTCCTT
454 AACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCT
* * * *
5289656 GAAACTAACATAACTTGTAGTTAAAGATGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAAT
519 GGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAAT
* * * * *
5289721 CTTTCACGAGATTTCATGTGCAACTTCATCCCATTAATGAGAAAGCCATT
584 CTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATT
5289771 TAACATATTC
Statistics
Matches: 1305, Mismatches: 166, Indels: 36
0.87 0.11 0.02
Matches are distributed among these distances:
845 61 0.05
846 432 0.33
847 124 0.10
849 1 0.00
852 1 0.00
854 2 0.00
855 1 0.00
863 1 0.00
864 305 0.23
865 78 0.06
866 284 0.22
867 15 0.01
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (864 bp):
TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
ATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
CTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
CCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTG
TGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGAC
CAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGA
GTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATCTAA
CTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGG
AACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCT
TTCACGAGATTTCGTGTGGAACCTAACCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCT
ATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACA
CATGAATGGTGAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTTGGCAT
GATATCTGTAATAAAAAAGCAACAATTTTAGTAAGAAAAAAGTTTAATTAATGAATATATTGAAT
GACAACATGTTATAAGTTA
Found at i:5291783 original size:865 final size:860
Alignment explanation
Indices: 5289758--5295789 Score: 8551
Period size: 865 Copynumber: 7.0 Consensus size: 860
5289748 ATCCCATTAA
* *
5289758 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCTAACCTATTGCACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * * * * *
5289823 GAATTTATTTGCATTAATGTTGAGACCTCAAATCACTTATTTTTCTGCTAGGCATGATATATGTA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCT-GGCATGATATCTGTA
* * * * *
5289888 ATAAAAAACCAATACTTTTAGTAAGAAAATGGTTTAATTAATTAAAATATTGAATGACAACATGT
130 ATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGT
* * *
5289953 TATAAGTCATAATATTATAAATTAATACATATGGATATAAAATCTTACTATATTTTTATGTCATA
195 TATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATA
* * **
5290018 TCAATTGTCATAAATATCTTCATCAACATCCTCCCGATCCCATAAAAATTGTGTAGTATTAGTGA
260 TCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGA
* * * * *
5290083 TAGTTTCCTCTAACTTTTGTGATACAAAAGGTAAAGCTTCAGATCTTGTTTCAATGTCATCTCTA
325 TAGTTTCATCTAAGTTTTGTGCTACAAAA-GTAAAGATTAAGATCTTGTTTCAATGTCATCTCTA
*
5290148 CTTCCATCCCCGATGTCTATCAAGTCTTTGGGGGTATTATAGAGCACAACATACCAACCCTCATC
389 CTTCCATCCCCGATGTCTATCAAGTCTCT--GGGTATTATAGAGCACAACATACCAACCCTCATC
* * * *
5290213 CATTTGATTGAGATAGTAAAAAAACTTGTTTCACTTAAGTAGAAAATACATATGACTCATTCATC
452 CATTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* * **
5290278 AACCGTTGACCAGTGTGAATTAATCGAGATAAATTCATTATTGTAAAACCGAATTTATCTCTTTT
517 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGAATTTATCTCTTTT
* *
5290343 CACGCCTCGAGTAGTGTTTACATCCGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCAT
581 CATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCAT
* * * * *
5290408 AATAATCTAACTTAAAAATATCCGTTAGAATTCCATAATAATCCACATCTCTCTCCAAATGATGA
646 AATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGA
*
5290473 TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAATTACTACTCCACAATTTTTGTGTCC
711 TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-TGTCC
* * *
5290538 TCCTTAATCTTTCACGAGATTTCATGCGGAACCTAAGCCCATTAATG-GTAAAGGAATTATATCT
775 TCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAG-AAAGGCATTATATCT
5290602 TTTAACAATTCTATTTGGACCT
839 TTTAACAATTCTATTTGGACCT
* * * * * *
5290624 TGAGAAAGACATTTAACATTTTCACTAACTT-TTTTCTATTCCAAACCCATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * ** *
5290688 AAATTAATTTGCACTAATGTTAATACCGCAAATCACTTATTGTTCTCCTGGGCATGATATCTGTA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCT-GGCATGATATCTGTA
* ** * * *
5290753 ATAAAAAAACAACAATTTTAGTATGAAAACAATTTAATTAATGAATATATTGACTGATAACATGT
130 ATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGT
* *
5290818 TATAAGTTATAATATTTTAAATTAATACATATAGATATAAAATCTTACTACATTCTTATGTCATA
195 TATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATA
* * *
5290883 TCAATTGTAATAAATATCTTCATCAACATCCTCCCGAACCCATTGAAATTGTATAGTATTAGTGA
260 TCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGA
* *
5290948 TAGTTTCATCTAAGTTTTGTGCTAGAAAAGGTAAAGATTAATATCTTGTTTCAATGTCATCTCTA
325 TAGTTTCATCTAAGTTTTGTGCTACAAAA-GTAAAGATTAAGATCTTGTTTCAATGTCATCTCTA
*
5291013 CTTCCATCCCCGATGTCTATCAAGTATCTTGAGGTATTATAGAGCACAACATACCAACCCTCATC
389 CTTCCATCCCCGATGTCTATCAAGTCTC-TG-GGTATTATAGAGCACAACATACCAACCCTCATC
* *
5291078 CATTGGATTGTGATAGTAAAAAAAACTTGTTTCCCTTAAGAAGAAAATACATATGACTCATTCAT
452 CATTGGATTGTGATAGT-AAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * *
5291143 CAATCGTTGACCAATGTGAATTAATAGAGAGAAATTCACCATTGTAAAACAAAATTTATCTCTTT
516 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC-GAATTTATCTCTTT
* * * * * * *
5291208 TTATGCCTCAAGTATTGTTTACATCAGCCCAGTCACACCAAAACCACACAACCTTTCATTTTCCG
580 TCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCA
* *
5291273 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATATACATCTCCCTCCAAATGATT
645 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
* * * *
5291338 ATTTTCCTTGGAACTAGCATAACTTTTAGTTGAAGATGTAACTACTACACCACAATTTTTGTGTC
710 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-TGTC
* *
5291403 CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATACCT
774 CTCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCT
**
5291468 TTTAACAATTCTATTTGGATAT
839 TTTAACAATTCTATTTGGACCT
*
5291490 TGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * * *
5291555 GAATTAATTTTCATTGATGTCGATACCACAAATCACTT-TTTTTCTCCTGGTATGATATCTGTAA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTAA
* * * ***
5291619 TAAAAAAGCAACAATTATAGGAAGAAAACAAATTAATTAATTAATATATTGAATGACAACATGTT
131 TAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGTT
5291684 ATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
196 ATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
* *
5291749 CAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTTAT
261 CAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGAT
*
5291814 AGTTTCATCTTAGTTTTGTGCTACAAAAG----G--TAA-A----G-----ATGTCATCTCTACT
326 AGTTTCATCTAAGTTTTGTGCTACAAAAGTAAAGATTAAGATCTTGTTTCAATGTCATCTCTACT
* * * * * *
5291863 TCTATCCCCGATGTCTATCAAGTCTCTGGGTTATTACATAGCACAATATACAAACCCTCATCAAT
391 TCCATCCCCGATGTCTATCAAGTCTCTGGG-TATTATAGAGCACAACATACCAACCCTCATCCAT
* * *
5291928 TGGATTATGATAATAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACACATTCATCAAT
455 TGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAAT
* *
5291993 CATTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTATCTGTTTTCAT
520 CGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGAATTTATCTCTTTTCAT
*
5292058 GCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACATTTCGTTTTCCATAAT
584 GCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCATAAT
** * *
5292123 AATCTAACTTAATAATGTATGTAAGAATTCCATATTAATCTACATCTCCCTTCAAATGATGATTT
649 AATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTT
*
5292188 TCCCTAGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTGTTTTGTCCTCC
714 TCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATT-TTTTGTCCTCC
* *
5292253 TTAATCTTTCATGAGATTTCATGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTA
778 TTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCTTTTA
5292318 ACAATTCTATTTGGACCT
843 ACAATTCTATTTGGACCT
* *
5292336 TGAGAAAGCCATTTAAAATATTCTCTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * * * *
5292401 GAAATAATTTGCTTTAATGTCGATACCGCAAATTACTTATTTTTCTCCTAGCATGATATCTGAAA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTAA
* * **
5292466 TAAAAAAAAACAACAATTTTAGTAAGAAAATGGGTTAATTAACAAATATATTGAATGACAACATG
131 T--AAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATG
*
5292531 TTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATGTCAT
194 TTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCAT
* * *
5292596 AACAATTGTCATAAATATATTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTGGTATTAGTG
259 ATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTG
* * * * *
5292661 ATAGTTTCATCTACGTTTTGTGCTACAAAATGTAAAGATTCAGATCTAT-TTTTAATGTCGTCTA
324 ATAGTTTCATCTAAGTTTTGTGCTACAAAA-GTAAAGATTAAGATCT-TGTTTCAATGTCATCTC
* *
5292725 TACTTCCATCCACGATGTCTATCAAGTCTCTGGGGTGTTACT-GAGCACAACATACCAACCCTCA
387 TACTTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTA-TAGAGCACAACATACCAACCCTCA
* * *
5292789 TCCATTAGATTGTGACAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCACTCA
450 TCCATTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* * * * *
5292854 TCAATCGTTGACCAGAGTAAATTAATCGAGAGAAATTCGCCATTGTAAAACAAAATTAATCTCTT
515 TCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC-GAATTTATCTCTT
* * * **
5292919 TTCATGCCTCTAGTTA-TGTTTACATCAACCCGGTCACACCGAAACAACACAATATTTCGTTTTC
579 TTCATGCCTCGAG-TAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTC
* * **
5292983 CATAATAATTTAACTTATTAATGTCCCAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
643 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
* *
5293048 TGATTTTCCTTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACGACTCCACAATTTTTT-T
708 TGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT
* * * *
5293112 CCCTCCGTAATCTTTCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAATGCATTATAT
773 -CCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATAT
5293177 CTTTTAACAATTCTATTTGGACCT
837 CTTTTAACAATTCTATTTGGACCT
* *
5293201 TGAGAAAGCCATTTAATATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * *
5293266 GAATTAA-TTCCTATTAATGTCGATATCGCAAATCACTTATTTTTCTCCTGGCATGATATTTGTA
66 GAATTAATTTGC-ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTA
* * * * * *
5293330 ATAAAAAAGCAACAATTATAGGGAA-AAAATGGTTTAATTAATGAATATATTGAATGACAAAATG
130 ATAAAAAAACAACAATTTTA-GTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATG
** * *
5293394 TTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCACACCACATTCTTATGCCAT
194 TTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCAT
* *
5293459 ATCAATTGTCATAAATATCTTGATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTG
259 ATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTG
* *
5293524 ATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAATATTTAGATCTTGTTTCAATGTCATCTCT
324 ATAGTTTCATCTAAGTTTTGTGCTACAAAA-GTAAAGATTAAGATCTTGTTTCAATGTCATCTCT
* * * *
5293589 ACTTCCATCCCCGATGTCTATCAAGTCTCTTGGGTATTACATAGCACAGA-AGACCAACCATCAT
388 ACTTCCATCCCCGATGTCTATCAAGTCTC-TGGGTATTATAGAGCACA-ACATACCAACCCTCAT
* * * * * *
5293653 CTATTGAATTATGACAGTAAAAAA-ATTGTTTCACTTAAGAAGAAAATACATATGACTCATTTAT
451 CCATTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * * * *
5293717 CAATCGTTGACCAGTGCGAATTAATCGAGAGAAATTCATCTTTATAAAACTGAATTTATCGCTTT
516 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC-GAATTTATCTCTTT
* * * ** * * *
5293782 TTATGCCTCGCGTAGTGTTTACATCAGCTCAGTCACACTAAAACCACACAACCCTTT-ATTTTCT
580 TCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAA-CCTTTCGTTTTCC
* * *
5293846 GTAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATATACGTCTCCCTCCAAATGAT
644 ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
* * * *
5293911 TATTTTCCTTGGAACTAGCATAACTTTTAGTTGAAGATGTAACTACTACTCCACAATTTTTGTGT
709 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-TGT
* * * * *
5293976 CCTCCATAATCTTTCACGAGATTTCTTGTGGAACATAAACTCATTAATGAGAAAGGTATTATATC
773 CCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATC
* **
5294041 TTTTAAAAATTCTATTTGGATAT
838 TTTTAACAATTCTATTTGGACCT
*
5294064 TGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * * *
5294129 GAATTAATTTTCATTGATGTCGATACCGCAAATCACTTTTTTTTTCTCCTGCCATGATATCTGTA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCAC-TTATTTTTCTCCTGGCATGATATCTGTA
* * * ***
5294194 ATAAAAAAGCAACAATTATAGGAAGAAAACAAATTAATTAATTAATATATTGAATGACAACATGT
130 ATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGT
*
5294259 TATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATATCATA
195 TATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATA
* *
5294324 TCAATTGTTATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGA
260 TCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGA
*
5294389 TAGTTTCATCTTAGTTTTGTGCTACAAAAG----G--TAA-A----G-----ATGTCATCTCTAC
325 TAGTTTCATCTAAGTTTTGTGCTACAAAAGTAAAGATTAAGATCTTGTTTCAATGTCATCTCTAC
* * ** * * *
5294438 TTCTATCCCCGATGTCTATCAAGTCTCTGGGTTATTACATTGCACAATATACAAACCCTCATCAA
390 TTCCATCCCCGATGTCTATCAAGTCTCTGGG-TATTATAGAGCACAACATACCAACCCTCATCCA
* * *
5294503 TTGGATTGTGATAATAAAAAGCCTTGTTTCACTTAAGAAGAAAATACATATGACACATTCATCAA
454 TTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAA
*
5294568 TCATTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTATCTCTTTTCA
519 TCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGAATTTATCTCTTTTCA
* *
5294633 TGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACATTTCATTTTCCATAA
583 TGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCATAA
** * *
5294698 TAATCTAACTTAATAATGTATGTAAGAATTCCATATTAATCTACATCTCCCTCTAAATGATGATT
648 TAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATT
*
5294763 TTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTATTACTCCACAATTGTTTTGTCCTC
713 TTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATT-TTTTGTCCTC
* *
5294828 CTTAATCTTTCATGAGATTTCATGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTT
777 CTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCTTTT
5294893 AACAATTCTATTTGGACCT
842 AACAATTCTATTTGGACCT
* * * *
5294912 TGAGAAACCCATTTAAAATATTCTCTAAATTCTCTTCCACTCCAAACCTATTACACATGAATGGT
1 TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
* * ** *
5294977 GAAATAATTTGCTTTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAACATGATATCTGAAA
66 GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTAA
* * *
5295042 TAAAAAAACAACAATTTTAGTAAGAAAACGGGTTAATTAACTAATATATTGAATGAAAACATGTT
131 TAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGTT
* *
5295107 ATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATGTCATAA
196 ATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
* *
5295172 CAATTGTCATAAATATATTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTTGTATTAGTGAT
261 CAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGAT
* * * *
5295237 AGTTTCATCTAAGTTTTGTGCTACAAAACGTAAAGATTCAGATCTAT-TTTTAATGTCGTCTATA
326 AGTTTCATCTAAGTTTTGTGCTACAAAA-GTAAAGATTAAGATCT-TGTTTCAATGTCATCTCTA
* *
5295301 CTTCCATCCACGATGTCTATCAAGTCTCTGGGGTGTTACT-GAGCACAACATACCAACCCTCATC
389 CTTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTA-TAGAGCACAACATACCAACCCTCATC
* * *
5295365 CATTAGATTATGACAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
452 CATTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* * * * * * **
5295430 AATCGTTGACCAGAGTAAATTAATCGAGAGAATTTCGCCATTGTAAAACCAAATTAATAACTTTT
517 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGAATTTATCTCTTTT
* * * *
5295495 CATGCCTCGAGTTA-TGTTTACATCAGCCCGGTCACATCGAAACAACACAATCTTTCGTATTCCA
581 CATGCCTCGAG-TAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCA
* * **
5295559 TAATAATTTAACTTATTAATGTCCCAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
645 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
*
5295624 ATTTTCCCTGGAACTAGAATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTT-TCC
710 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT-C
* * * *
5295688 CTCCGTAATCTTTCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAATGCATTATATCT
774 CTCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCT
5295753 TTTAACAATTCTATTTGGACCT
839 TTTAACAATTCTATTTGGACCT
5295775 TGAGAAAGCCATTTA
1 TGAGAAAGCCATTTA
5295790 GGTGAATTAA
Statistics
Matches: 4612, Mismatches: 478, Indels: 155
0.88 0.09 0.03
Matches are distributed among these distances:
846 456 0.10
847 388 0.08
848 470 0.10
849 209 0.05
850 1 0.00
852 2 0.00
853 1 0.00
854 3 0.00
855 1 0.00
856 3 0.00
857 4 0.00
858 3 0.00
860 1 0.00
861 2 0.00
862 252 0.05
863 581 0.13
864 586 0.13
865 818 0.18
866 765 0.17
867 66 0.01
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (860 bp):
TGAGAAAGCCATTTAACATATTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGT
GAATTAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTAA
TAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAATTAATATATTGAATGACAACATGTT
ATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
CAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGAT
AGTTTCATCTAAGTTTTGTGCTACAAAAGTAAAGATTAAGATCTTGTTTCAATGTCATCTCTACT
TCCATCCCCGATGTCTATCAAGTCTCTGGGTATTATAGAGCACAACATACCAACCCTCATCCATT
GGATTGTGATAGTAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATC
GTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACGAATTTATCTCTTTTCATGC
CTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCATAATAA
TCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTC
CCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCCTCCTTA
ATCTTTCACGAGATTTCATGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCTTTTAACA
ATTCTATTTGGACCT
Found at i:5298250 original size:863 final size:863
Alignment explanation
Indices: 5295805--5303699 Score: 11462
Period size: 863 Copynumber: 9.2 Consensus size: 863
5295795 ATTAATTCCT
* * * *
5295805 ATTAATGTCGATATCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGTAATAAAAAGCAACA
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAACAACA
* ** *
5295870 ATTATAGGGA-AAAATGGTTTAATTAA-AGAATATATTGAATGACAACATGTTATAAGTTATAAT
66 ATTTTAGTAAGAAAACGGTTTAATTAACA-AATATATTGAATGACAACATGTTATAAGTTATAAT
** * *
5295933 ATTATAAATTAATACATATGGATATAAAATCACACCACATTCTTATGCCATATCAATTGTCATAA
130 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
*
5295998 ATATCTTGATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
195 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
5296063 GTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGA
260 GTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGA
* * * * *
5296128 TGTCTATCAAGTCTCTTGGGTATTACAGAGCACAGA-AGACCAACCCTCATCTATTGAATTATGA
325 TGTCTATCAAGTCTCTGGGGTATTACATAGCACA-ACATACCAACCCTCATCCATTGGATTATGA
*
5296192 CAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTTATCAATCGTTGACCAG
389 CAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAG
* * * * * * * *
5296256 TGCGAATTAATCGAGAGAAATTCATCTTTATAAAACTGAATTTATCGCTTTTTATGCCTCTCA-T
454 TGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTC-GAGT
* ** * * **
5296320 AGTGTTTACATCAGCTCAGTCACACTAAAACCACACAACCCTTT-ATTTTCTGTAATAATCTAAC
518 AGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAAC
* * * *
5296384 TTAATAATGTACGTAAGAATTCCATAATAATATACGTCTCCCTCCAAATGATTATTTTCCTTGGA
583 TTAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGA
* * * *
5296449 ACTAGCATAACTTGTAGTTGAAGATGTAACTACTAATCCACAATTTATGTGTCCTCCATAATCTT
648 ACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTT-TTTGTCCTCCTTAATCTT
* * *
5296514 TCACGAGATTTCTTGTGGAACCTAAACTCATTATTGAGAAAGGCATTATATCTTTTAAAAATTCT
712 TCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCT
** * * *
5296579 ATTTGGATATTGAGAAAGCCATTTAACATCTTCACTAACTTGTCTTCTACTCCAAAACTATTACA
777 ATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACA
* *
5296644 CATGAATGGTGAATTAATTTTC
842 CATGAATGGTGAAATAATTTGC
* * * *
5296666 ATTGATGTCGATACCGCAAATCACTTTTTTTTCTCCTGGCATGATATCTGTAATAAAAAAGCAAC
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAA-CAAC
* * *** ** *
5296731 AATTATAGGAAGAAAACAAATTAATTAATTAATATATTGAATGACAACAAGTTATAAGTTATAAT
65 AATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
5296796 ATTATAAATTAATACATATGGATAT-AAATCTT-CTACATTCTTATGTCATATCAATTGTCATAA
130 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
*
5296859 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTTA
195 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
* * *
5296924 GTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATATCTACTTCTATCCCCGA
260 GTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGA
* * * *
5296989 TGTCTATCAAGTCTCTGGGTTATTACATAGCACAATATACAAACCCTCATCCATTGGATTATGAT
325 TGTCTATCAAGTCTCTGGGGTATTACATAGCACAACATACCAACCCTCATCCATTGGATTATGAC
* * * *
5297054 AATAAAAAACCTTGTTTCACTTAAGAAGAAAATAC--ATGACACATTCATCAATCATTGACCAGT
390 AGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGT
**
5297117 GTGAA-T--TCGAGAGAAATTCACCATTGTAAAATTGAATTTATCTCTTTTCATGCCTCGAGTAG
455 GTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGTAG
* *
5297179 TGTTTACATCAGCCCAGTCACACCGAAACAACACAA-CATTTCGTTTTCCATAATAATCTAACTT
520 TGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAACTT
* * *
5297243 AATAATGAATGTAAGAATTCCATATTAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAAC
585 AATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAAC
5297308 TAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTATTTTGTCCTCCTTAATCTTTC
650 TAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATT-TTTTGTCCTCCTTAATCTTTC
* *
5297373 ATGAGATTTCATGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTAT
714 ACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTAT
* * *
5297438 TTGGACCTTGAGAAAGCCATTTAAAATATTCTCTAACTTCTCTTCCACTCCAAACCTATTACACA
779 TTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACA
5297503 TGAATGGTGAAATAATTTGC
844 TGAATGGTGAAATAATTTGC
*
5297523 TTTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAGAAAACAAC
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAA-AAAACAAC
*
5297588 AATTTTAGTAAGAAAACGGGTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
65 AATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
5297653 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
130 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
*
5297718 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTTA
195 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
* * *
5297783 GTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATATCTACTTCTATCCCCGA
260 GTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGA
* * * * * *
5297848 TGTCTATCAAGTCTCTGGGTTATTACATAGCACAATATACAAACTCTCATCCATTGGATTGTGAT
325 TGTCTATCAAGTCTCTGGGGTATTACATAGCACAACATACCAACCCTCATCCATTGGATTATGAC
* * * *
5297913 AATAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACACATTCATC-ATCATTGACCAGT
390 AGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGT
*
5297977 GTGAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTATCTCTTTTCATGCCTCGAGTAG
455 GTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGTAG
* * *
5298042 TGTTTACATCAGCACAGTCACACCGAAACAACACAA-CATTTCGTTTTCCATAATAATCTAACTT
520 TGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAACTT
* *
5298106 AATAATGTATGTAAGAATTCCATATTAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAAC
585 AATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAAC
5298171 TAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTGTTTTGTCCTCCTTAATCTTTC
650 TAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATT-TTTTGTCCTCCTTAATCTTTC
* *
5298236 ATGAGATTTCATGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTAT
714 ACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTAT
* * * *
5298301 TTGGACCTTGAGAAACCCATTTAAAATATTCTCTAACTTCTCTTCCACTCCAAACCTATTACACA
779 TTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACA
5298366 TGAATGGTGAAATAATTTGC
844 TGAATGGTGAAATAATTTGC
*
5298386 TTTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATTAAAAAACAAC
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAA-TAAAAAACAAC
* *
5298451 AATTTTAGTAAGAAAATGGGTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
65 AATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
* *
5298516 ATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATGTCATAACAATTGTCATAA
130 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
* * * *
5298581 ATATATTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTTGTATTAGTGATAGTTTCATCTAT
195 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
* * * *
5298646 GTTTTGTGCTAAAAAATGTAAAGATTCAGATCAATT-TTT-AATGTCGTCTATACTTCCATCCAC
260 GTTTTGTGCTACAAAATGTAAAGATTCAGATC--TTGTTTCAATGTCATCTCTACTTCCATCCCC
* * *
5298709 GATGTCTATCAAGTCTCTGGGGTGTTAC-TGAGCACAACATACCAACCCTCATCCATTAGATTGT
323 GATGTCTATCAAGTCTCTGGGGTATTACAT-AGCACAACATACCAACCCTCATCCATTGGATTAT
* *
5298773 GACAATAAAAAACCTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACC
387 GACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACC
* * * * *
5298838 AGAGTAAATTAATCGAGAGAAATTCGCCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAG
452 AGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAG
* * *
5298903 TTA-TGTTTACATCAGCCCGGTCACACCGAAACAACACAAT-CTTTCGTTTTCCATAATAATTTA
517 -TAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTA
* * **
5298966 ACTTATTAATGTCCCAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTT-CCTG
581 ACTTAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTG
* *
5299030 GAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTT-CCCTCCGTAATCT
646 GAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCCTCCTTAATCT
* * *
5299094 TTCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAATGCATTATATCTTTTAACAATTC
711 TTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTC
5299159 TA-TTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTAC
776 TATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTAC
* *
5299223 ACATGAATGGTGAATTAA-TTCC
841 ACATGAATGGTGAAATAATTTGC
* * * *
5299245 TATTAATGTCGATATCGCAAATCACTTATTTTTCTCTTGGCATGATATCTGTAATAAAAAAGCAA
1 -ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAA-CAA
* * * **
5299310 CAATTATAGGGAA-AAAATGGTTTAATTAA-TGATATA-TGAATG---ACATG-TATAAGTTATA
64 CAATTTTA-GTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATA
* *
5299368 A-ATAATAAATTAATACATATGGATATAAAATC--ACTCCACATTCTTATGCCATATCAATTGTC
128 ATATTATAAATTAATACATATGGATATAAAATCTTACT--ACATTCTTATGTCATATCAATTGTC
*
5299430 ATAAATATCTTGATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCAT
191 ATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCAT
5299495 CTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
256 CTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCC
* * * * * *
5299560 CCGATGTCTATCAAGTCTCTTGGGTATTACAGAGCATAGA-AGACCAACCCTCATCTATTGAATT
321 CCGATGTCTATCAAGTCTCTGGGGTATTACATAGCACA-ACATACCAACCCTCATCCATTGGATT
*
5299624 ATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTTATCAATCGTTGA
385 ATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGA
* * * * * *
5299688 CCAGTGCGAATTAATCGAGAGAAATTCATCTTTGTAAAACCGAATTTATCGCTTTTTATGCCCCG
450 CCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCG
* * * ** * * ** *
5299753 CGTATTGTTTACATCAGCTCAGTCACACTAAAACCACACAACCCTTT-ATTTTCTGTAATAATAT
515 AGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCT
* * * * *
5299817 AACTTAATAATGTCCGTAAGAATTCCATAATAATATACGTCTCCCTCCAAATGATTATTTTCCTT
580 AACTTAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCT
* * *
5299882 GGAACTAGCATAACTTGTACTTGAAGATGTAACTACTACTCCACAATTTTTGTGTCCTCCATAAT
645 GGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-TGTCCTCCTTAAT
* * * * *
5299947 ATTTTACGAGATTTCTTATGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAAAAAT
709 CTTTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAAT
* *
5300012 TCTATTTGAACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTACAAACCTATT
774 TCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATT
5300077 ACACATGAATGGTGAAATAATTTGC
839 ACACATGAATGGTGAAATAATTTGC
** * *
5300102 ATTAATGTCGATACCTTAAATCACTAATTTTTCTCCTAGCATGATATCTGAAATAAAAAATAACA
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAACAACA
* * *
5300167 ATTTAAGTAAGAAAACGGGTTAATTAACAAATATATTGAATGACAATATGTTATAAGTTATAATA
66 ATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAATA
*
5300232 TTATAAATTAATACATATGGATATAAAATCTTA-TGACATTCTTATGTCATAACAATTGTCATAA
131 TTATAAATTAATACATATGGATATAAAATCTTACT-ACATTCTTATGTCATATCAATTGTCATAA
* * * *
5300296 ATATATTCATCAACGTCCTCCCGATCCCATTGAAATTGTGTTGTATTAGTGATAGTTTCATCTAA
195 ATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAA
* * * * * *
5300361 GTTTTGTACTAAAAAATGTAAAGATTCAGATCTAT-TTTTAATGTCGTCTATACTTCCATCCTCG
260 GTTTTGTGCTACAAAATGTAAAGATTCAGATCT-TGTTTCAATGTCATCTCTACTTCCATCCCCG
* * * *
5300425 ATGTCTATTAAGTCTCTGGTGTGTTAC-TGAGCACAACATACCAACCCTCATCCATTAGATTATG
324 ATGTCTATCAAGTCTCTGGGGTATTACAT-AGCACAACATACCAACCCTCATCCATTGGATTATG
*
5300489 ACAGTAAAAAAACTTGATTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCA
388 ACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCA
** * * * * * * *
5300554 AAGTAAATTAATAGAGAGAAATTCTCCATTATAAAACCAAATTAATCTCTTTTCATGCTTCGAGT
453 GTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGT
* * * *
5300619 AGTGTTTACATCAGCCCGGTCACACCGAAACAACACAAT-CTTTCGTTTTCCATAATAATTTATC
518 AGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAAC
* * ** *
5300683 TTAATAATATCCCAAAGAATTCCATAATAATCTACATCTACCTCCAAATGATGATTTTCCCTGGA
583 TTAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGA
*
5300748 ACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACGCCACAATTTTTT-TCCCTCCTTAATCTT
648 ACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT-CCTCCTTAATCTT
* * * *
5300812 TCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAATGCATTATATATTTTAACAATTCT
712 TCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCT
* *
5300877 ATTTGGACCTTGAGAAAGCCATTTAACACCTTCACTAACTTCTCTTCTACTCCAAACCTATTACA
777 ATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACA
* *
5300942 CAAGAATGGTGAATTAATTCT-C
842 CATGAATGGTGAAATAATT-TGC
* * *
5300964 ATTGATGTCGATACTGCAAATCACTTATTTTTCTCCTGGCATGATATCT-ATAATAAAAAAGCAA
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGA-AATAAAAAA-CAA
* **
5301028 CAATTATAAG-AAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATA
64 CAATT-TTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATA
** *
5301092 ATATTATAAATTAATACATATGGATATAAAATCACACTATATTCTTATGTCATATCAATTGTCAT
128 ATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCAT
* *
5301157 AAATATCTTGATCAACGTCCTCCCGAACCCATTTAAATTTTGTAGTATTAGTGATAGTTTCATCT
193 AAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCT
* *
5301222 TAGTTTTGTGCTACAAAATGTAAAGATTCAGATGTTGTTTCAATGTCATCTCTACTTCCATCCCC
258 AAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCC
* *
5301287 GATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAATG
323 GATGTCTATCAAGTCTCTGGGGTATTACATAGCACAACATACCAACCCTCATCCATTGGATTATG
*
5301352 AGAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCA
388 ACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCA
* * *
5301417 ATGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTATCTCTTTTCATGCCTCTAGT
453 GTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGT
* *
5301482 AGTGTTTACATCAGCCCAGTCACACCGAAACAACA-AAACCTTTCATTTTCGATAATAATCTAAC
518 AGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAAC
* * * * *
5301546 TTAATAATGTATGTAATAATTCCATATTAATCTACATCTCCCTCCTAATGATGATTTTGCCTGGA
583 TTAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGA
* * *
5301611 ACTAGCATAACTTGTAGTTGAAGATA-TAACTACTACACCATAATTTTTTTGTCCTCCGTAATCT
648 ACTAGCATAACTTGTAGTTGAAGA-AGTAACTACTACTCCACAA-TTTTTTGTCCTCCTTAATCT
*
5301675 TTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAGAGGCATTATATCTTTTAACAATTC
711 TTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTC
* * * * *
5301740 TATTTGGCCCTTGAAAAAGTCATTTAACATCTTCACTAACTTCTGTTCCCCTCCAAACCTATTAC
776 TATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTAC
5301805 ACATGAATGGTGAAATAATTTGC
841 ACATGAATGGTGAAATAATTTGC
5301828 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAAAACAA
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAAT--AAAAAACAA
* * *
5301893 CAATTTAAGTAAGAAAACGCTTTAATTAACAAATATATTGAATGACAACATGCTATAAGTTATAA
64 CAATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAA
* * *
5301958 TATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATGTCATAACAACTGTCATA
129 TATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATA
* * * * * ** * * *
5302023 AATTTATTCATCAACGTTCTCCCAAACCCATTGAAATTATGTTCTATTAGTGATAGGTTAATATA
194 AATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTA
** * * * *
5302088 AGTTTAT-CCCTACAAAATGTTAAGATTCAGATCTAT-TTTTAATGTCATCTATACTTCCATCGC
259 AGTTT-TGTGCTACAAAATGTAAAGATTCAGATCT-TGTTTCAATGTCATCTCTACTTCCATCCC
* * *
5302151 CGATGTCTATCAAGTCTCTGGGGTGTTAC-TGAGCACAACATACCAACCGTCATCCATTGGATTG
322 CGATGTCTATCAAGTCTCTGGGGTATTACAT-AGCACAACATACCAACCCTCATCCATTGGATTA
* * *
5302215 TGACACTAAAAAAAACTTGTTTTACTTAAGAAGAAAATACATATGACTCATTCATCAATTGTTGA
386 TGACAGT-AAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGA
* * * *
5302280 CCAGAGTGAATTAATCGAGAGAAATTCGA-CATTGTAAAACCAAATTAATCTCTTTTCATGCTTC
450 CCAGTGTGAATTAATCGAGAGAAATTC-ACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTC
* * *
5302344 GAGTAGTGTTTACATCAGCCCAGACACACTGAAACAACACAAT-CTTTCATTTTCCATAATAATT
514 GAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATC
* * *
5302408 TAACTAAATAATGT-TGCAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCC
579 TAACTTAATAATGTACG-TAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCC
* * * *
5302472 ATGGAACTAGCATAACTTGTAGTTCAAGAAGTAACTACTACTCCACAGTTTTTTTGCCCTCCTTA
643 CTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACA-ATTTTTTGTCCTCCTTA
* * * *
5302537 ATCTTTCACGAGATTTCGTGAGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAAGA
707 ATCTTTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACA
* * * *
5302602 ATTCTATTTGGACCTTGAGAAAGGCATTTAACATATTCTCTAACTTCTCTTCCACTCAAAACCTA
772 ATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTA
*
5302667 TTACACATGAATGGTGAGATAATTTGC
837 TTACACATGAATGGTGAAATAATTTGC
* *
5302694 ATTAATGTCGATACCGGAAATCACTTATTTTTCTCCTAGCATGATATATGAAATAAAAAA-AACA
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAACAACA
* * * * *
5302758 ATTTTAGTAAGGAAATGGTTTAATTAACGAATATATTCAATGACAACATTTTATAAGTTATAATA
66 ATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAATA
* * * *
5302823 TTATAAATTAATACATATGGATAGAAAATCTTATTACATTCTTATGTCATAACAATTGTCGTAAA
131 TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAA
* * *
5302888 TATATTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTTGTATTAGTGATAGTTTCATCTAAG
196 TATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAAG
** * *
5302953 TTTTGTGCTACAAAATGTAAAGATTCAGATCTAT-TTTTTATGTCGTCTATACTTCCATCCCCGA
261 TTTTGTGCTACAAAATGTAAAGATTCAGATCT-TGTTTCAATGTCATCTCTACTTCCATCCCCGA
* * *
5303017 TGTCTATCAAGTCTATGGGGTGTTAC-TGAGCACAACATACAAACCCTCATCCATTGGATTATGA
325 TGTCTATCAAGTCTCTGGGGTATTACAT-AGCACAACATACCAACCCTCATCCATTGGATTATGA
*
5303081 CAGTAAAAAAACTTGTTTTACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAG
389 CAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAG
* * * * *
5303146 AGTGAATTAATCAAGAGAAATTCTCCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTA
454 TGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGTA
* * * * *
5303211 GTGCTTATATCAGCCCAGTCACACCGAAACAACACACT-CTTTCATTTTCCATAATAATTTAATT
519 GTGTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAACT
* ** *
5303275 TAATAATGTCCCAAAGAATTTCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAA
584 TAATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAA
* * *
5303340 CTAGCATAACTTGTAGTTCAAGAAGTAACTACTACTCCATAATTTTTTTGCCCTCCTTAATCTTT
649 CTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTTGTCCTCCTTAATCTTT
* * *
5303405 CACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAATGCATTATATCTTTTAACAATTCTA
713 CACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTA
* * * *
5303470 TTTGGACCTTGAGAAAGGCATTTAACATATTCTA-TAACTTCTCCTCCAATCCAAACCTATTACA
778 TTTGGACCTTGAGAAAGCCATTTAACATCTTC-ACTAACTTCTCTTCCACTCCAAACCTATTACA
5303534 CATGAATGGTGAAATAATTTGC
842 CATGAATGGTGAAATAATTTGC
* *
5303556 ATTAATGTCGATACCACAAATCAATTATTTTTCTCCTAGCATGATATCTGAAATAAAAAAACAAC
1 ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAAT-AAAAAACAAC
** *
5303621 AATTTTAGTAAGAAAACGGTTTAATTAATGAATATATTGAATGAAAACATGTTATAAGTTATAAT
65 AATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAAT
*
5303686 AATATAAATTAATA
130 ATTATAAATTAATA
5303700 TAGTTTCATC
Statistics
Matches: 6393, Mismatches: 554, Indels: 171
0.90 0.08 0.02
Matches are distributed among these distances:
851 6 0.00
852 205 0.03
853 287 0.04
854 17 0.00
855 97 0.02
856 140 0.02
857 497 0.08
858 18 0.00
859 275 0.04
860 200 0.03
861 379 0.06
862 984 0.15
863 2034 0.32
864 478 0.07
865 294 0.05
866 479 0.07
867 3 0.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (863 bp):
ATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAACAACA
ATTTTAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAACATGTTATAAGTTATAATA
TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAA
TATCTTCATCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTAAG
TTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGAT
GTCTATCAAGTCTCTGGGGTATTACATAGCACAACATACCAACCCTCATCCATTGGATTATGACA
GTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTG
TGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTCATGCCTCGAGTAGT
GTTTACATCAGCCCAGTCACACCGAAACAACACAATCCTTTCATTTTCCATAATAATCTAACTTA
ATAATGTACGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAACT
AGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCCTCCTTAATCTTTCAC
GAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTT
GGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATG
AATGGTGAAATAATTTGC
Found at i:5305522 original size:865 final size:864
Alignment explanation
Indices: 5303710--5306678 Score: 4437
Period size: 865 Copynumber: 3.4 Consensus size: 864
5303700 TAGTTTCATC
* * *
5303710 TTTGTGCTATAAAATGTAAAGATTCAGATCTTATTTCAATGTCATCTCTACTTCTATCCCCGATG
1 TTTGTGCTACAAAATGTAAAGATTCAGATCTTATTTCAATGTCATCTATACTTCCATCCCCGATG
* * * * * *
5303775 TCTATCAAGTCTCT-GGGTATTACAGAGCACAAGATACCAATCCTCATCCATTGGATAATGAGAG
66 TCTATCAAGTCTTTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATAGTGATAG
* * * *
5303839 TGAAAATACTTGTTTCACATAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGT
131 TAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGAGT
* * **
5303904 GAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTTTCTCTTTTCATGCCTCGAGTAGTG
196 GAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTAGTG
*
5303969 TTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAAT-ATTATAACTTAA
261 TTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATT-TAACTTAA
* *
5304033 TAATGTATGTAAGAATTCCATATTAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAACTA
325 TAATGTATGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAACTA
* *
5304098 GCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAAATTTTTTGTCCTCCTTAATCTTTCAC
390 GCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGCCCTCCTTAATCTTTCAC
* *
5304163 GAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTT
455 GAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTT
* * * *
5304228 GGACCTTGAGGAAGTCATTTATCATCTTCACTAACTTGTCTTCCACTCCAAACCTATTACACATG
520 GGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATG
*
5304293 AATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGCATGATAT
585 AATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGAATGATAT
* *
5304358 CTGAAATAAAAAAACAACAATTTAAGTAAGAAAACGGTTTAATTAACAAATATATTGAATGACAA
650 CTGAAATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAACGAATATATTGAATGACAA
*
5304423 CATGCTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATG
715 CATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATG
* * * * *
5304488 TTATAACGATTGTCATAAATATATTCATCAACGTTCTCCCGAACCCATTGAAATTATGTTGTATT
780 TCATAACAATTGTCATAAATATATTCATCAACGTCCTCCTGAACCCATTGAAATTGTGTTGTATT
5304553 AGTGATAGTTTCATCTAAGT
845 AGTGATAGTTTCATCTAAGT
* * ***
5304573 TTTGTGCTAAAAAATGTAAAGATTCAGATC-TATTTTTAATGTTGGCTATACTTCCATCCCCGAT
1 TTTGTGCTACAAAATGTAAAGATTCAGATCTTA-TTTCAATGTCATCTATACTTCCATCCCCGAT
* * * *
5304637 GTCTATCAAGT-TTCTGGGGTGTTACTGAGCACAACATACCAACCCTCATCCATTGGATTGTGAT
65 GTCTATCAAGTCTT-TGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATAGTGAT
*
5304701 AGTAAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTAATCAATCGTTGACCAG
129 AGT-AAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAG
* * *
5304766 AGTGATTTAATCGAGAGAAATTCGCCATTGTAAAACCAAATTAATCTCTTTTCATGCTTCGAGTA
193 AGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTA
* * * * *
5304831 GTGTTTACATCAGCCAAGTCGCACCGAAACAACACAATCTTTCGTTTTCCATAATAATTTAACTT
258 GTGTTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATTTAACTT
* * * *
5304896 AATAATGTCCT-AAAGAATTCCATAATATTCTACATTTCTCTCCAAATGATGATTTTCCCTGGAA
323 AATAATGT-ATGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAA
* * *
5304960 CTAACATAACTTGTAGTTCAAGAAGTAACTACTACTCCACAATTTTTTTACCCTCCTTAATCTTT
387 CTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGCCCTCCTTAATCTTT
* *
5305025 CATGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATATTTTAACAATTCTA
452 CACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTA
* * *
5305090 TTTGGACCTTGAGAAAGGCATTTAACATATTCTCTAACTTCTCTTCCACTCCAAACCAATTACAC
517 TTTGGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACAC
5305155 ATGAATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGAATGA
582 ATGAATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGAATGA
* *
5305220 TACCTGAAATAAAAAAACAACAATTTTAGTAAGAAAACAGTTTAATTAACGAATATATTGAATGA
647 TATCTGAAATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAACGAATATATTGAATGA
* * *
5305285 CAACATGTTATAAGATATAATATTAAAAATTAATACATATGCATATAAAATCTTATTACATTCTT
712 CAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTT
*
5305350 ATGTCATAACAATTGTCACAAATATATTCATCAACGTCCTCCTGAACCCATTGAAATTGTGTTGT
777 ATGTCATAACAATTGTCATAAATATATTCATCAACGTCCTCCTGAACCCATTGAAATTGTGTTGT
5305415 ATTAGTGATAGTTTCATCTAAGT
842 ATTAGTGATAGTTTCATCTAAGT
* * * * *
5305438 TTTGTACGACAAAATGTAAAGATTCAGATC-TATTTTTAATGTCGTCTATACTTCCATCCCCGAA
1 TTTGTGCTACAAAATGTAAAGATTCAGATCTTA-TTTCAATGTCATCTATACTTCCATCCCCGAT
* ** * *
5305502 GTCTATCAAGTCTTTGGGGTGTTATTGAGCACAACATACCAACCCTCATCCATTAGATTGTGACA
65 GTCTATCAAGTCTTTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATAGTGATA
* * ** *
5305567 GTAAAAAAGCTTGTTTCACTTAAGAACAAAATACATATGACTCATTCATCAATATTTGACTAGAG
130 GTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGAG
*
5305632 TAAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTAGT
195 TGAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTAGT
* * *
5305697 GTTTACATCAACCCGGTCACACCGAAACAACACAATCTTTCGTTTTCCATAATAATTTAACTTAA
260 GTTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATTTAACTTAA
*** * * * *
5305762 TAATGTCCCAAAGAAATCCATAATATTCTACATTTCCCTCCAAATGATGATTTTCCCTAGAACTA
325 TAATGTATGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAACTA
* ** **
5305827 GCATAACTAGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGCTTTTTTTAATCTTTCAC
390 GCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGCCCTCCTTAATCTTTCAC
5305892 GAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTT
455 GAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTT
*
5305957 GGACCTTGAAAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATG
520 GGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATG
* * * **
5306022 AATGGTGAATTAATTCT-CATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCTTTGAT
585 AATGGTGAAATAATT-TGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAG-AATGAT
* * * * * * *
5306086 ATCTGTAATAAAAAAACAAGAATTATAGGAAGAAAATGGTTTAATTAACGAATATATTAAATGAT
648 ATCTGAAATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAACGAATATATTGAATGAC
* * ** *
5306151 AACATGTTATAAGTTATAATATTTTAAATTCATACATATGGATATAAAATCACACTACATTCTTA
713 AACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTA
* * * * *
5306216 TGCCATATCAATTGTCATAAATATCTT-ATCAACATCCTCCAT-AACCCATTGAAATTGTGTAGT
778 TGTCATAACAATTGTCATAAATATATTCATCAACGTCCTCC-TGAACCCATTGAAATTGTGTTGT
*
5306279 ATTAGTGATATTTTCATCTAAGT
842 ATTAGTGATAGTTTCATCTAAGT
* * * *
5306302 TTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCTCGATG
1 TTTGTGCTACAAAATGTAAAGATTCAGATCTTATTTCAATGTCATCTATACTTCCATCCCCGATG
* * *
5306367 TTTATCAAGTCTTAGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTACATAGTGATAG
66 TCTATCAAGTCTTTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATAGTGATAG
* * * * * *
5306432 T-AAAAAGCTTTTTTCACTTAAGAATAAAATACATATGACTCAATCATCAATCATTGACCATAGT
131 TAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGAGT
* * *
5306496 GAATTAATCGAGAGAAATTCACCATTGTAAAATCGAATTTATCTCTTTTCATGCCTCGAGTAGTG
196 GAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTAGTG
* * * *
5306561 TTTACATCAACCCAGTCACACCGAAAGATCACAACCTTACATTTTCCATAATAATCTAACTTAAT
261 TTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATTTAACTTAAT
* *
5306626 AATGTATGTAAGAATTCCATATTAATCTACATCTCCCTCCAAATGATGATTTT
326 AATGTATGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTT
5306679 TCCTAACTCA
Statistics
Matches: 1913, Mismatches: 181, Indels: 24
0.90 0.09 0.01
Matches are distributed among these distances:
862 3 0.00
863 287 0.15
864 681 0.36
865 936 0.49
866 6 0.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (864 bp):
TTTGTGCTACAAAATGTAAAGATTCAGATCTTATTTCAATGTCATCTATACTTCCATCCCCGATG
TCTATCAAGTCTTTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTAGATAGTGATAG
TAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGAGT
GAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTAATCTCTTTTCATGCCTCGAGTAGTG
TTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATTTTCCATAATAATTTAACTTAAT
AATGTATGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCCCTGGAACTAG
CATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGCCCTCCTTAATCTTTCACG
AGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTG
GACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGA
ATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATCACTTATTTTTCTCCTAGAATGATATC
TGAAATAAAAAAACAACAATTTTAGTAAGAAAACGGTTTAATTAACGAATATATTGAATGACAAC
ATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATGT
CATAACAATTGTCATAAATATATTCATCAACGTCCTCCTGAACCCATTGAAATTGTGTTGTATTA
GTGATAGTTTCATCTAAGT
Found at i:5311076 original size:864 final size:862
Alignment explanation
Indices: 5306954--5320549 Score: 11970
Period size: 865 Copynumber: 15.5 Consensus size: 862
5306944 ATAAATTAAT
* * *
5306954 ATAGTTTCATCTTAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
*
5307019 ACTTCTATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
66 ACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
* * * *
5307084 CATTGGATAATGAGAGTAAAAAAACTTGTTTCACATAAGAAGAAAATACATATGACTTATTCATC
131 CATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* * * *
5307149 AATCGTTGACCATTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCGATTTTTTCTCTTTT
196 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTTT
* * * *
5307214 CATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACATTTCGTTTTCCAT
261 TATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCAT
** *
5307279 AATAATCTAACTTAATAATGTATGTAAGAATTCCATATTAATCTACATCTCCCTCCAAATGATGA
326 AATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGA
5307344 TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTGTTTTGTCC
391 TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATT-TTTTGTCC
*
5307409 TCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACTCATTAATGAGAAAGGCATTATATCTT
455 TCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTT
* *
5307474 TTAACAATTCTATTTGGACCTTGAGAAAGCCATTTATCATCTTCACTAACTTGTCTTCCACTCCA
519 TTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCA
* * *
5307539 AACCTATTACACATGAATGGTGAAATAATTTGCATTAATGTCGATACCGCAAATTACTTATTTTT
584 AACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTT
*
5307604 CTCCTA-GCATGATATCTGAAATAAAAAAAAAACTACAATTTTAGTAAGAAAATAGTTTAATTAA
649 CTCCTAGGCATGATATCTGAAAT--AAAAAAAA--ACAATTTTAGTAAGAAAATGGTTTAATTAA
* *
5307668 CGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATATATATGGATATAAA
710 TGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAA
* * * * * *
5307733 ATCTTATTACATTATAATGTCATAACAATTGTCATAAATATATTCATCAACGTCCTTCCGAACCC
775 ATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCC
*
5307798 ATTGAAATTGTGTTGTATTAGTG
840 ATTGAAATTGTGTAGTATTAGTG
* * * *
5307821 ATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCATATCTAT-TTTTAATGTCGTCTA
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCT-TGTTTCAATGTCATCTA
* * * *
5307885 TACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTGTTACTGAGTACAACATACCAACCCTCAT
65 TACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCAT
5307950 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * * * *
5308015 CAATCTTTGACTAGGGTAAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTTATCTCTTT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTT
* * * * * *
5308080 TCATGCCTCGAGTAGTGTTTACATCAACCCGGTCACACCGAAACAACACAATCTTTCGTTTTCCA
260 TTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCA
* ** * ** * *
5308145 TAATAATTTAACTTAATAATGTCCCAAAGAAATCCATAATTTTTTACATTTCCCTCCAAATGATG
325 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
* *
5308210 ATTTTCCCTAGAACTAGCATAACTAGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTT-TAA
390 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT--
* *
5308274 CCTCCTTAATCTTTCACTAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATCTC
453 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAA-CCCATTAATGAGAAAGGCATTATATC
* * *
5308339 TTTTAACAATTCTATTTGGTCCTTGAGAAAGGCATTTAACATATTCACTAACTTCTCTTCCACTC
517 TTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
*
5308404 CAAACCTATTACACATGAATGGTGAATTAATTCT-CATTGATGTCGATACCGTAAATCACTTATT
582 CAAACCTATTACACATGAATGGTGAATTAATT-TGCATTGATGTCGATACCGCAAATCACTTATT
* * * * * *
5308468 TTTCTCAT-GGCTTTGATATCTGTAATAAAAAAGGAACAATTATAGGAAGAAAATGGTTTAATTA
646 TTTCTCCTAGGC-ATGATATCTGAAATAAAAAA-AAACAATTTTAGTAAGAAAATGGTTTAATTA
*
5308532 ATGAATATATTGAATGACAACATGTTATAAGTTATAATTTTATAAATTAATACATATGGATATAA
709 ATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAA
** * * * *
5308597 AATCACACTGCATTCTTATGTCATATCAATTGTCATAAATATCTTGATCAACGTCCTCCCAAAAC
774 AATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACC
* *
5308662 CATTGAAATTTTGTAGTATTAGCG
839 CATTGAAATTGTGTAGTATTAGTG
* * *
5308686 ATAGTTTCATCTTAGTTTTGTGATACAAAAAGTAAAGATTCAGATCTTGTTTCAATGTCATCTCA
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCT-A
* * *
5308751 -ACTTCTATCCCCGATGTTTATCAAGTCTTTGGGGTATTACAGAGCACAACATACCAACCCTCAT
65 TACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCAT
** * * * *
5308815 CCATTACA-AAGTGATAGTAAAAAAACTTGTTTCACTTAACAATAAAATACATATGACTCATTCA
130 CCATTGGATTA-TGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* * * *
5308879 TCAATCGTTGACCAGAGTGAATTAATCGAGTGAAATTTACCATTGTAAAATCGAATTTATCTCTT
194 TCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTT
* * *
5308944 TTTATGCCTCGAGTAGTGTTTACATCAACCCAGTCACACCGAAAGAACACAACCTTTCA-TTTTC
259 TTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTT-AGTTTTC
** * * * *
5309008 CATAATAATCTAACTTAATAATGTATGTAAGAATTCTAGATTAATCTACATTTCCCTCCAAATGA
323 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
*
5309073 TGATTTTCCCTGGAACAAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAAATTTTTTG
388 TGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCAC-AATTTTTTG
* *
5309138 TCCTCTTTAATCTTTCACAAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGCATTATAT
452 TCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAA-CCCATTAATGAGAAAGGCATTATAT
* * * *
5309203 CTTTTAACAGTTCTATTTGGACCTTGAGAAAGGCAATTAACATCTTCTCTAACTTCTCTTCCACT
516 CTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACT
* * ** * * * *
5309268 CTAAACCTATTACACAGGAATAATGAATTAATTTGAATCGATGTTGATACCGCGAATCACTTATT
581 CCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATT
* ** * * * *
5309333 GTTCTCCTAGGCATTTTATCT-ATAATAAAAAACAACAATTATAGAAAGAAAACGGTTTAATTAA
646 TTTCTCCTAGGCATGATATCTGA-AATAAAAAAAAACAATTTTAGTAAGAAAATGGTTTAATTAA
* * * *
5309397 CGAATATATTGAATGACAACATGTTATAAGTTATAATATTTTAAATTAATACATACGGTTATAAA
710 TGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAA
* * * * **
5309462 ATCTTACTACATTATTATGCCATATCAATTGTCATAAATATCTT-GTCAACATCCTCCATAACCC
775 ATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCC
5309526 ATTGAAATTGTGTAGTATTAGTG
840 ATTGAAATTGTGTAGTATTAGTG
* * * * **
5309549 ATATTTTCATCTATGTTTTGTGCTACAAAAGGTAAAGATTCAGATATTGTTCCAATGTCATCCCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * *
5309614 ACTT-ATATTCCCGATGCCTATCAATTCTCTGGGGGTATTACAGAGCACAACATACCAACCCTCA
66 ACTTCA-ATCCCCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCA
*
5309678 TCCATTGGATTATGACTGTAAAAAACACTTGTTTCACTTATA-AAGAAAATACATATGACTCATT
129 TCCATTGGATTATGACAGTAAAAAA-ACTTGTTTCACTTA-AGAAGAAAATACATATGACTCATT
* * * * *
5309742 CATCAATCTTTCACCGGTGTGAATTAATCGAGATAAATTCACCATTTTAAAATCAAATTTATCTC
192 CATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTC
* * * * *
5309807 TTTTTATACCACGAGAAGTGTTTACATCAGTCCAGTCACACCGAAACAGCACAACCTTTTGTTTT
257 TTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTT
* * *
5309872 CCTTAATAATCTAACTTAATAATGTCTGTAAGAATTCTATAATAATCTACATCTCCCTCCAAATG
322 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
* * *
5309937 ATTATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCATAATTTTTTT
387 ATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTT
* * *
5310002 GTCCTCCTTAATCTTTCACGAGATTTCTTGTGGAACCTGAACCCATTAATGGGAAAGGAATTATA
451 GTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATA
*
5310067 ACTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
515 TCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
* * * *
5310132 TCCAAACGTATTACACATGAATGGTGAAATAATTTGCATTGATGTCGATATCGCAAATCATTTAT
580 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTAT
* **
5310197 TTTTCTCCT-GGCATGAGATCTGAAATAAAAAAGAAACAATTTTAGTAAGAAAACAGTTTAATTA
645 TTTTCTCCTAGGCATGATATCTGAAATAAAAAA-AAACAATTTTAGTAAGAAAATGGTTTAATTA
*
5310261 ATGAATATATTGAATGAGAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAA
709 ATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAA
* * * * * * *
5310326 AATCTTACTATATGCTTACGTCATATCAATTGTTATAAATATATTCATCAACGTCATCCCGAGCC
774 AATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACC
*
5310391 CATTGAAATTGTGTAGTATTACTG
839 CATTGAAATTGTGTAGTATTAGTG
* * * * * *
5310415 ATAGTTCCAACTAAGTTTTGTGCAACAAAATGTAAAGAATCAGATCTTGTTTTAAT-TGCATCTA
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGT-CATCTA
* * * * *
5310479 TACTTCAATCCACGATGTCTATCAAGTCTCTAGGGTATTACTGAGCACAACATACCAACCATTAT
65 TACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCAT
* * * * * * *
5310544 CCATTGAATTGTGCCAATAGAAAAAGTTGTTTAACTTAAGAAGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* *
5310609 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAA-CTGAATTTATCTATT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATC-AAATTTATCTCTT
* *
5310673 TTTATGCCTCGAGTAGTGTTTACATCAGCCTAGTCACACC-AGAATAGCACAACCTTTAGTTTTC
259 TTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGA-AACAGCACAACCTTTAGTTTTC
* * * *
5310737 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATTTGCATCTCTCTCTAAATGA
323 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
* * * *
5310802 TGATTGTCCTTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACCACTACTCCACAATTTTGTGT
388 TGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT
* ** * *
5310867 CATGTTTAATTTTTCACGAGATTTCGTGTGGAACCTGAATCCATTAATGAGAAAGGCATTATATC
453 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATC
* * *
5310932 TTTTAACAATTCTATTTGTACCTTGAGAAAGCCATATAACATCTTCACTAACTTCTATTCCACTC
517 TTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
*
5310997 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACTGCAAATCACTTATTT
582 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTT
* * * * *
5311062 TTTTCCTAGGCATGATATCTGTAATAAAAAAACAATAATTTTAGTAAGAAAAGGGCTTAATTAAT
647 TTCTCCTAGGCATGATATCTGAAATAAAAAAA-AACAATTTTAGTAAGAAAATGGTTTAATTAAT
* * *
5311127 AAATATATTGAATGAAAACATGTTATAAGTTATAATACTATAAATTAATACATATGGATATAAAA
711 GAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAA
* * **
5311192 TCTTACTACATTCTTATGTCATTTCAATTGTTATAAATATCTTCATCAACGTCCTCCCGAACAAA
776 TCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCA
* * *
5311257 TTGAAATTGTGCAATACTAGTG
841 TTGAAATTGTGTAGTATTAGTG
* ** * * *
5311279 ATAGTTTCATCGAAAATTTGTGCTACATAAGGTAAAGATTCAAATCTTGTTTCAATGTCATCTCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * * * *
5311344 ACTTCCATCCCCAATGTCTATCAAGTCTCTGGGGTATTACATAGCACGACATACCAACTCTCATC
66 ACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
* *
5311409 CATTGGATTATGACAGTAAAAAAACTTGTTTCAATTAAGAAGAAAATACCTATGACTCATTCATC
131 CATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* *
5311474 AATCGTTGACCACTGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCAAATTTATCTCTTTT
196 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTTT
* *
5311539 TATGCCACGAGTAGTGTTTACATCAGGCCAGTCACACCGAAA-AGCACAACCTTTTA-TTTTCCA
261 TATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACC-TTTAGTTTTCCA
* * * *
5311602 TAATAATCTAACTTCATAATTTCCGTAAGAATTCCATAATAATCTACATCTTCCTCCAAATCATG
325 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
* * * *
5311667 ATTTTCCCTGGAAATAGCATAACTTTTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCA
390 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCC
* * * * * *
5311732 TCCTTAATCTTTCATGAGATTTTGTGTTGAACTTGAACTCATTAATGAGAAAGGTATTATATCTT
455 TCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTT
* *
5311797 TTAACAATTCTAATTGGACATTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCA
519 TTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCA
*
5311862 AACCTATT--A-AT--A---TG--------T--ATTGATGTCGATACCGTAAATCACTTATTTTT
584 AACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTT
* * * * *
5311909 ATCCTAGGCATGATATTTGTAATAAAAAAAACAACAATTTTAGTAAGAAAATGGTTGAGTTAATG
649 CTCCTAGGCATGATATCTGAAAT-AAAAAAA-AACAATTTTAGTAAGAAAATGGTTTAATTAATG
* *
5311974 AATATATTGAATGACAACATGTTTTAAGTTATAATATTATAAATTAATATATATGGATATAAAAT
712 AATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAAT
* * *
5312039 CTTACTACATTCTTAT-TACATATCAATTGTCATAAATATCTTCATCAACGTCTTGCCGAATCCA
777 CTTACTACATTCTTATGT-CATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCA
5312103 TTGAAATTGTGTAGTATTAGTG
841 TTGAAATTGTGTAGTATTAGTG
* * **
5312125 ATAGTTTCATCTAAATTTTGTGCTACAAAAGGTAAAGATTCAGATCTT-TTTCAATGTCATATCC
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * ** * *
5312189 ACTTTC-ATCTCCGATGTCTACCAAGTCTCTAAATGACG-ACTGTCCCTGGAGCTAGCATAACTT
66 AC-TTCAATCCCCGATGTCTATCAAGTCTC----TGGGGTA-T-T-AC---AG--AGCACAAC--
* ** * * * * ****** **
5312252 GTAGTTGAACAAGTAACTACTACTCCACATT--TTTGTGTC-CTCTTTTCACGAGATTTCA-TGT
116 --A--T-ACCAA--CCCT-C-A-T-C-CATTGGATTATGACAGTAAAAAAACTTG-TTTCACT-T
* ** *** ** * * * * * * * * *
5312313 -GGAACCTGAACCTA-ATAATGAGAAAGGCATTATATCTTTTAACAAT-TCTATTTGGACCTTGA
167 AAGAA---GAAAATACAT-ATGACTCATTCATCA-ATCGTTGACCAGTGT-GAATT--A-ATCGA
* * ** * *** * * * ** * * *
5312375 GA-AAGCCATTTAACATCT-TCACTAGCTTCTCTTCCACTCCAAACATATTACACAT-GAATGGT
223 GAGAA---ATTCACCAT-TGT-AAAATCAAAT-TT--A-T-C--TCTTTTTATGCCTCGAGTAGT
* * * * **** * * * * ** * *
5312437 GAATTA-ATTTA---CATTGATGTTGATACAGCGA-ATCACTTATTGTTCTCC-TAGGCATTTTA
276 G-TTTACA-TCAGCCCAGTCACACCGAAACAGC-ACAAC-CTT-TAGTTTTCCATA-ATAATCTA
* **** * *** * * *** * *
5312496 TCTATAATAAAAAAC--AACAATT--ATAGA-AAGAAAACGGTTTAATTAACGAATAT-ATTGAA
335 ACT-TAATAATGTCCGTAAGAATTCCATA-ATAA-TCTAC-ATCTCCCT--CCAA-ATGA-TGAT
** * ** * * * * * * **
5312555 TGACAACATGTTA-TAAGTTATAATATTTTAAATTAATACATATGGTTATAAAATCTTACT--AC
392 TTTC--CCTGGAACT-AG-CATAA-CTTGT-AGTTGA-AGA-A--G-TA-ACTA-C-TACTCCAC
* * * * * * * * **
5312617 -ATTCTTATG-CCAT-ATCAAT-TGTCA-TAAATATCTTGTCAACATCCTCCATAACCCATTGAA
443 AATT-TTTTGTCC-TCCTTAATCTTTCACGAGATTTCGTGTGGA-A----CC-TAACCCATT--A
* * * * ** * * *** *
5312677 ATTGTG-TA-GTATTAGTGATATTTTCCTCTAAGTT-T-TGTGCTA-CAAAAGGTAAAG--ATTC
498 A-TGAGAAAGGCATTA-T-ATCTTTT-AAC-AA-TTCTATTTG-GACCTTGA-G-AAAGCCATTT
* * * * * ** * ** * * * *
5312735 AGATATTGTTC-C-AA--TGTCATCC-CTACTTA--TATT-CCCGATGCCT-ATCAATT-CTCTG
554 A-ACA-TCTTCACTAACTTCTCTTCCACTCCAAACCTATTACAC-ATGAATGGTGAATTAATTTG
*** * * * * **** * *
5312790 -GGGGTAT-TAC-AGAGCACAACAT-AC-CAACCCTCATCCATTGG-ATTATGA-CTG---T-AA
616 CATTG-ATGT-CGATACCGCAA-ATCACTTATTTTTC-TCC-TAGGCATGAT-ATCTGAAATAAA
* * ** * * * * * * **
5312844 AAAAAAC-TTGTTTCACTTATAAAGAAAATACATATGACTCATTCATCAATCTTTTTATACCACG
675 AAAAAACAAT-TTT-A---GT-AAGAAAAT-GGT-T---TAATTAATGAATATATTGA-ATGAC-
* * * * ** ** * * ** *
5312908 AGA-AGTGTTTACATCAGTCCAGTCACACCGA-AACAGCACA-ACCTTTTGTTTTCCTTAATAAT
727 A-ACA-TG-TT--ATAAGT-TA-TAATA-TTATAA-ATTA-ATA-CATATG-GAT--ATAA-AAT
* * * ** * * * * *
5312970 CTAACTTAATAATGTCTGTAAGAATTC-TAT-AATAATC-TACATCTCCCTCCAAATGATTATTG
777 CTTAC-T-A-CAT-TCT-TATG---TCATATCAATTGTCATAAATAT--CTTC--ATCA--A-CG
** * * * * * * *
5313032 TCC-CTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCC
827 TCCTCCCGAAC---C--CA-TTGAAATTG-TGTAGT-A-T--TAGT-G
* *
5313079 ATAATTTTTGTGTCCTCCTTAATCTTTTACGAGATTTCTTGTGGAACCTGAACCCATTAATGGGA
1 AT-A-----GT-T--T-C---ATC---TA--AG--TT-TTGT-G---CT--A--CA--AAAGGTA
* * * * * * * * * * *
5313144 AAGGAATT-ATAACTTGTTAT-AAGTTATAATATTATAAATT-AATACAC-ATGTATATAAAATC
35 AA-G-ATTCAGATCTTGTT-TCAA--TGTCAT-CTAT-ACTTCAATCCCCGATGTCTATCAAGTC
**** * * * * *
5313205 ATACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCCTCAACGTCCTCCCGAACCCATT
93 -T-CTGGGGTATTA---CAGAGC-A----CA-ACATA-----C-CAAC--CCT--C--ATCCATT
* * * * ** *
5313270 GAAATTTTG-TAGTATTAGTGATAGTTTCATA-TATGTTT-TGTGCTACAAAATGTAAAGATTCA
135 G-GATTATGACAGTA--A---A-A-----AAACT-TGTTTCACT--TA-AGAA-G-AAA-A-T-A
* * *** ** * * ** * * **
5313332 GATCTTTTTTCAATGTCATCTCTAC-TTCCATCTACGATGTCTATCAACTCTCTAG-GGTATT-A
179 CAT-ATGACTC-AT-TCATCAAT-CGTT-GA-CCA-G-TGTGAATTAA---TCGAGAGAAATTCA
* * * * ** ** * * *
5313394 -CATAGCACAACATACAAACCCTCATC-CATTGGATTGTGATAG--TAAAAAAACTTTTTTCACT
233 CCATTGTA-AA-AT-CAAA--TTTATCTC-TT---TT-T-AT-GCCT-CGAGTA-GTGTTT-ACA
* *** * * ** ** * ** * *
5313455 TAAGAATAAAAT-ATATATGACTCATTCATCAACC----GTTGACCA-ATGTGAAT-TAA-TCGA
283 TCAG--CCCAGTCACA-CCGAAACA-GCA-CAACCTTTAGTTTTCCATA-AT-AATCTAACT-TA
* * ** ** * *
5313512 GAGAAAT-TCACCATTGTAA-AATT--A-AATTTATCTATTTTCATATCTCGAGTAGTGTTTACA
340 -A-TAATGT--CC---GTAAGAATTCCATAA-TAATCTA-CATC-TCCCTCCA--AATG-----A
* ** * * * ** * ** *
5313572 TCAGCCCAGTCACACC-GAAAC-AACATAACCTTTCGT-TTTCCATAA-TAA-T-CTAACTTAAT
388 T--G---ATTTTC-CCTGGAACTAGCATAA-C-TT-GTAGTTGAAGAAGTAACTACT-ACTCCAC
** ** * **
5313631 AATGTATGTAAGAATTCCATATTAATCTACATCTCTGTCCAAATGATGATTTTC-CCTGGAACTA
443 AAT-T-T-TTTG---TCC----TCCT-TA-ATCT-T-T-C--ACGA-GA-TTTCGTGTGGAAC--
* * ** * *****
5313695 GCATAA--CTTGTAGTTGA-AGAAGTAACTACTACTCCACAATTTTTTTTGTCCTCCTTAATCTT
487 -C-TAACCCAT-TA-ATGAGA-AAGGCATTA-TA-T---C--TTTTAACAAT--T-C-T-A--TT
** * * * * * * * *** *
5313757 TCACGAGATTTTGTGTGGAA-CC--TAAAC-TCATT-AATGAGAAATGCATTATATCTTTTAACA
533 T---G-GA-CCT-TGAGAAAGCCATTTAACATC-TTCACT---AACTTC--TCT-TCCACT-CCA
** * ** * * ** * *
5313817 ATTCTATTTCAACATTGAGAAAG-GAATTTAACATCTT-CACTAACT-TCTCTTTCTCTCCAAA-
584 AACCTATTAC-ACA-TGA-ATGGTGAA-TT-A-AT-TTGCATTGA-TGTC-GATAC-C-GCAAAT
*** ** * * * * * * ** * ** * ** ***
5313878 C-C-TATTACACATGAATGGTGAAATAATTTGCATTAATGTCGATAATCACTTATTTTTCTCCTA
638 CACTTATTTTTC-T-CCTAG-G-CATGATAT-C-TGAA-ATAAAAAAAAAC-AATTTTAGTAAGA
* * * ** * * * * * * *
5313941 GAATGATATCTGAAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAAGTAACGAATATATTG
695 AAATGGT-T-T-AATTAATGAA-TA-TA-TTGAATGACAACAT-G-TT-A-TAA-G--T-TA-T-
* * ** * * ** *
5314006 AATGACAACATGT-TATAAGTAACAACATTATAAATTAATACATATGGATATAAAATCTTATTAC
744 AAT------AT-TATA-AATTAA-TACA-TATGGA-T-ATA-AAAT--CT-TACTA-CA------
* * *
5314070 ATTCTTATCTCATATCAATTGTCATAAATATATTCATCAACGTCCTCCCGAACCCAATGAAATTG
786 -TTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTG
5314135 TGTAGTATTAGTG
850 TGTAGTATTAGTG
* * * * ** *
5314148 ATAG-TTCATATAAGTTTTCTGCTACAAAATGTAAAGAATCAGATCTAT-TTTTTATGTCGTCTA
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCT-TGTTTCAATGTCATCTA
* * *
5314211 TACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTGTTACTGAGCACAACATACCAACCCTCAT
65 TACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCAT
* *
5314276 CCATTGGATTGTGTCAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * * * *
5314341 CAATCGTTGACCAATGAGAATTAATCGAGAGAAATTCACCGTTGTAAAACCAAATTAATC-CTTT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTT
* * * *
5314405 TTCATGCCTCGACTAGGGTTTACATCATCCCAGTCACACCGAAACAACACAACCTTTCA--TTTC
260 TT-ATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTT-AGTTTTC
* *
5314468 CATAATAATTTAACTTAATAATGTCCGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
323 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
* * *
5314533 TGATTTTCCCTAGAACTAGCATAACTTGTAGTTGAAGAAGAAACTACTACCCCACAATTTTTTTG
388 TGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTTG
* *
5314598 CCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGAATTATAT
452 TCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAA-CCCATTAATGAGAAAGGCATTATAT
* *
5314663 CTTTTAACAATTCTATTTGGACATTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACT
516 CTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACT
* *
5314728 CCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTTGATACCGCAAATCATTTATT
581 CCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATT
* * * *
5314793 GTTCTCCTAGGCATGATATCTGTAATAAAAAAAAACAACAATTTCAGTAAGAAAATAGTTTAATT
646 TTTCTCCTAGGCATGATATCTG-AA-ATAAAAAAA-AACAATTTTAGTAAGAAAATGGTTTAATT
** * * *
5314858 AACAAATTTATTGAATGAAAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATTTA
708 AATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATA
* * * * **
5314923 AAATCTTACTACATTCTTATGACATATCAATTTTCATAAATATATTCATCAACGTCTTCAGGAAC
773 AAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAAC
*
5314988 CAATTGAAATTGTGTAGTATTAGTG
838 CCATTGAAATTGTGTAGTATTAGTG
* * *
5315013 ATAGTTTCATCTAAGTTTTGTGCTACAAAACGTAAAGATTCATATCTTGTTTCAATGTCATCTCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * * **
5315078 ACTTCCATCCCCGATATCCATCAAGTCTCTAGGGGTATTATTGAGCACAACATACCAACCCTCAT
66 ACTTCAATCCCCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCAT
* * * * *
5315143 CCATTGCATTGTTATAGTAAAAAAACTTGTTTCACTTAAGATGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * *
5315208 CAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTATAAAA-CAGAATTTATCTCAT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCA-AATTTATCTCTT
* * *
5315272 TTTATGCCTTGAGTAGTGTTTAGATCAGCCCAGTCACACCGACACCA-CACAACCTTTCA-TTTT
259 TTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGA-AACAGCACAACCTTT-AGTTTT
* * * * * *
5315335 TCGTATTAATATAACTTAATAATGTCCGTAAGAATTCCATAATAATATACATCTCCCTCTAAATG
322 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
* ** * *
5315400 ATCATTGACCTTGGAACTAGTATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGT
387 ATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-T
* * **
5315465 GTCCTCCTTAATATTTCACGAGATTTTGTGTGGAACCTTAACCCA-T--T---AAACCCATTATA
451 GTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACC-TAACCCATTAATGAGAAAGGCATTATA
** * *
5315524 TCTTTTAACAATTCTATTTGGATTTTGAGAAAGCCATTTAACATATTCACTAACTTCACTTCCAC
515 TCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
* * * * *
5315589 TCTAAACCTATTACACATGAATGGTGAATTAATTTTCATTGATGTCGATACCGTAACTCACTTTT
580 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTAT
* *** *
5315654 TTTTCTCCT-GGCATGATATCTGAAATAAAAAAACAACAATTTTAGGAAGAAAACAATTTAACTA
645 TTTTCTCCTAGGCATGATATCTGAAATAAAAAAA-AACAATTTTAGTAAGAAAATGGTTTAATTA
5315718 ATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAA
709 ATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAA
* * * *
5315783 AATCATACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCCTCAGCGTCCTCCCGTACC
774 AATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACC
*
5315848 CATTGAAATTTTGTAGTATTAGTG
839 CATTGAAATTGTGTAGTATTAGTG
** **
5315872 ATAGTTTCATCTAAGTTTTGTGCTACAAATTGTAAAGATTCAGATCTTGTTTCAATGTCATCTCC
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * *
5315937 ACTTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTAAAGAGCAGAACATACCAACCCTCATC
66 ACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
5316001 CATTGGATTATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
131 CATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* * *
5316065 AATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTATAAAA-CTGAATTTATCTCTTT
196 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATC-AAATTTATCTCTTT
* * * *
5316129 TTATGCCTCGAGTAGTGTTTACATGAGCCCAGTCACACCGAAACAACACATCCTTTAGTTTTCCC
260 TTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCA
* * *
5316194 TAATAATGTAACTTAATAATGTCCGTAAAAATTCCATAATAATCTACATCTCCCTCAAAATGATG
325 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
* * *
5316259 ATTGTCCCTGGAACTAGCATAACTTCTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTCC
390 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCC
* *
5316324 TGCTTAATCTTTCATGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCTT
455 TCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTT
* * **
5316389 TTAAAAATTCTATTTGGACTTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTTTACTCCA
519 TTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCA
*
5316454 AACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCACAAATCACTTATTTTT
584 AACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTT
* * * * * * *
5316519 CTCCT-GGTATTATATCTGTAATAAAAAAGAAAAAAATTTAGGAAGAAAATAGTTTAATTAATGA
649 CTCCTAGGCATGATATCTGAAATAAAAAA-AAACAATTTTAGTAAGAAAATGGTTTAATTAATGA
* *
5316583 ATATATTGAATGACAACATGTTATAAATTATAATTTTATAAATTAATACATATGGATATAAAATC
713 ATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATC
* * * * * *
5316648 ATACTATATTCTTATGTCATATCAATTATCATAAATATATTAATCAACGTCCTCCTGAACCCATT
778 TTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATT
* *
5316713 GAAACTT-TATAGTATTTGTG
843 GAAA-TTGTGTAGTATTAGTG
* * *
5316733 ATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATTTGT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * * * * *
5316798 ACTTCCATCCCCGTTGTCTATCAAGTCTTTGAGGGTATTACATAGGACAACATACCAAACCTCAT
66 ACTTCAATCCCCGATGTCTATCAAGTCTCTG-GGGTATTACAGAGCACAACATACCAACCCTCAT
* * * * * * *
5316863 CCTTTGGATTGTGACCGTAAAAAAACTTGTTTCATTTAAGAATAAAAGACATGTGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * *
5316928 CAATCGTTGACCAGTGTGAATTAATCGAAAGAAATTCACCATTGTAAAACCGAATTTATCTCTTT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTT
* * * * *
5316993 TCATGCCTCGAGTAGTGTTT-CATCATCCCAGTCACACGGAAACAACACAACCTTTTGTTTTCCA
260 TTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCA
* *
5317057 TAATAATCTAACTTAATAATGTCCCTAAGAATTCCATAATAATCTACATCTCCCTCAAAATGATG
325 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
*
5317122 ATTTTCCCTGGAACTATCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAAGTTTTTTGTC
390 ATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTTGTC
* * *
5317187 GTCCTTAATCTTTCACGAGATTTCGTGTGGACCCTAAACCCATTAATGAGAAAGCCATTATATCT
454 CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCT
* * * *
5317252 TTTAATAATTCTATTTGGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTGTACCACTCC
518 TTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCC
* * * * *
5317317 AAACATATTACACATGAATGATGAATTAATTTGTATTGATGTTGATACCGCAAATCACTTATTGT
583 AAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTT
* * * * *
5317382 TCTTCTGGGCATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAACGA
648 TCTCCTAGGCATGATATCTGAAATAAAAAAAAACAATTTTAGTAAGAAAATGGTTTAATTAATGA
* *
5317447 ATATATTGAATGACAACATGTTGTAAGTTATAATACTT-TAAATTAATACATATTGATAT-AAAT
713 ATATATTGAATGACAACATGTTATAAGTTATAATA-TTATAAATTAATACATATGGATATAAAAT
* * *
5317510 CTTACTACATTCTTATGTCATATTAATTGTCATAAATATCTTCTTCAACGTCCTCCTGAACCCAT
777 CTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCAT
5317575 TGAAATTGTGTAGTATTAGTG
842 TGAAATTGTGTAGTATTAGTG
* * * * *
5317596 ATATTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCA-ACTTTTGTTTCATTGTGATCTC
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGA-TCTTGTTTCAATGTCATCTA
* * *
5317660 TACTTCTATCCCCGATGTCTATCAAGTCTCTAGGGGTACTACAGAGCGCAACATACCAACCCTCA
65 TACTTCAATCCCCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCA
5317725 TCCATTGGATTATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
129 TCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* * * * * **
5317789 TCAATCGTTTACCAATGTTAATTAATCGAGAGAAATTCACTACTGTAAAATGGAATTTATCTCTT
194 TCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTT
* * *
5317854 TTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCATTTTTT
259 TTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTT-AGTTTTC
** * *
5317919 TGTAATAATCTAACTTAATAATGTCCGTAAGAATTCTATAATAATCTACATCTCCCTCAAAATGA
323 CATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGA
* * * * * *
5317984 TGATTCTCCCTGGAACTAGCATAACTTCTAGTTGAAGAATTAACTACTACTTCACAATTCTGTGT
388 TGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGT
* * * **
5318049 TCTGCTTAATCTTTGACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATCGTATC
453 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATC
*
5318114 TTTTAAAAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
517 TTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
*
5318179 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACCTATTT
582 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTT
* * * *
5318244 TTCTCCT-GGTATGATATCT-ATAATAAAAAAGCAACAATTTTAGGAAGAAAATAGTTTAATTAA
647 TTCTCCTAGGCATGATATCTGA-AATAAAAAA-AAACAATTTTAGTAAGAAAATGGTTTAATTAA
* *
5318307 TGAATATATTGAATGACAACATGTTATATA-TTATAATCTTATAAATTAATACATATAGATATAA
710 TGAATATATTGAATGACAACATGTTATA-AGTTATAATATTATAAATTAATACATATGGATATAA
*
5318371 AATCTTGCTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACC
774 AATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACC
5318436 CA-TGTAAATTGTGTAGTATTAGTG
839 CATTG-AAATTGTGTAGTATTAGTG
* * * * *
5318460 ATAGTTTCATATAAGTTTTAG-GCCACAAAAGGTAAAGATTCAAATTTTGTTTCAATGTCATCTC
1 ATAGTTTCATCTAAGTTTT-GTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTA
* * * * * *
5318524 TACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGAAAAATATATCAACCCTCAT
65 TACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCAT
* *
5318589 CCATTGTATTATGATAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * **
5318654 CAATCGTTGACCAATATGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGGA---A------T
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTT
* **
5318709 TTAT--CTC---T--T-TTT--AT--G-CC--TCACACCGAAACAACACAACCTTTCA-TTTTTT
260 TTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTT-AGTTTTCC
* * * * *
5318758 GTAATAATCTAACTTAATAATGTCTGTAAGAATTCTATAATAATATGCATCTCCCTCCAAATGAT
324 ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
* * * * * *****
5318823 GATTGTCCTTGGAACTAACATAACTTGTAGTTGAAGAAGTAACTACTACTCAAAAAAAAAAAT-T
389 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTC-CACAATTTTTTGT
*
5318887 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCGTTAATGAGAAAGGCATTATATC
453 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATC
* *
5318952 TTTTAACAATTCTATTTGGATCTTGAGAAAGCCCTTTAACATCTTCACTAACTTCTCTTCCACTC
517 TTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
* * * * *
5319017 CAAACCTATTACACATGAATGGTGGATTAATTTTCATTGATGTTGATACCACAAATCACTAATTT
582 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTT
* * * **
5319082 TTCTCCTA-GCATGATATCTGTAATAAAAAAGCAACAATTTTAGGAAGAAAAAAGTTTAATTAAT
647 TTCTCCTAGGCATGATATCTGAAATAAAAAA-AAACAATTTTAGTAAGAAAATGGTTTAATTAAT
5319146 GAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAA
711 GAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAA
** * *
5319211 TGATACTAAATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCT
776 TCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCA
*
5319276 TTGAAATTTTGTAGTATTAGTG
841 TTGAAATTGTGTAGTATTAGTG
* * * * *
5319298 ATAGTTTAATCTATGTTTTGTACTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCTCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * *
5319363 ACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAACATAACATACCAACCCTCATC
66 ACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
* * * *
5319428 CATTGGATTGTGATAGT-AAAAAA-TTGTTTTACTTGAGAAG--AAT-CATATGACTCATTCATC
131 CATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
* * * *
5319488 AATCGTTGAGCAGTGTGAATTCATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTT
196 AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTTT
* * * *
5319553 CATGCCTCGAGTAGTGTTTACATCAGCCCAATCACACCGAAACAACACAACCTTTTGTTTTCCAT
261 TATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCAT
*
5319618 AATAATCTAACTTAATAATGTCCCTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGA
326 AATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGA
* * *
5319683 TTTTCCCTGGAACTATCATATCTTATAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGTCC
391 TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTTGTCC
* * * *
5319748 TCCTTAATCTTTCACGAGATTTCGTTTGGAACCTAAACCCATCAATGAGAAAGGCATTATATATA
455 TCCTTAATCTTTCACGAGATTTCGTGTGGAACCT-AACCCATTAATGAGAAAGGCATTATATCTT
* * * * *
5319813 TTAAAAATTCCATTTGGACCTTGAGAAAGGCATTTAACATATTCACTAACTTCTCTTTCACTCCA
519 TTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCA
* ** * * * *
5319878 AACCTATTACACATGAATGGTGGATTAATTTGTGTTGATGTTGATACTGCAAATCACTTACTGTT
584 AACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTT
* * * * * * * * *
5319943 ATACTAGGCATGATATATGCAATAAAAAACAACAATTTTAGAAAGAAAACGGGTTAATTAATGGA
649 CTCCTAGGCATGATATCTGAAATAAAAAAAAACAATTTTAGTAAGAAAATGGTTTAATTAATGAA
* *
5320008 TATATTGAATGACAACATGTTATAAGTTATAATACTT-TAATTTAATACATATGGATATAAAATA
714 TATATTGAATGACAACATGTTATAAGTTATAATA-TTATAAATTAATACATATGGATATAAAATC
*
5320072 TTACTACATTCTTATGTCATATCAATAGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATT
778 TTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATT
*
5320137 AAAATTGTGTAGTATTAGTG
843 GAAATTGTGTAGTATTAGTG
* * * * **
5320157 ATATTTTCATCTAGGTTTTGTGCTACAAAAGGTAAAGATTTAAATCTTGTTTCAATGTCATCCCT
1 ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
* * *
5320222 ACTTCCATCCCCGATGCCTATCAAATCTCTGGGGGTATTACAGAGCACAACATACCAACCCTCAT
66 ACTTCAATCCCCGATGTCTATCAAGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCAT
* * **
5320287 ACATTGGATTATGACAATAAAAAAACTTGTTTCACTTCTGAAGAAAATACATATGACTCATTCAT
130 CCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCAT
* * * * *
5320352 CAATCATTGACCAGTGTGAATTAATCGAGAGAATTTCACCATTTTAAAACCGAATTTATCTCTTT
195 CAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTT
** * * * * * *
5320417 TTATAACTCGAGTAATGTTTACATCAGCACAGTCACACCGAAACAACACAACATTTAGTTTTGCT
260 TTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCA
*
5320482 TAATAATCAAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
325 TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATG
5320547 ATT
390 ATT
5320550 GTCTGGAACC
Statistics
Matches: 10419, Mismatches: 1654, Indels: 1314
0.78 0.12 0.10
Matches are distributed among these distances:
833 61 0.01
834 6 0.00
836 15 0.00
837 9 0.00
838 619 0.06
839 32 0.00
841 2 0.00
842 1 0.00
843 4 0.00
844 2 0.00
845 91 0.01
846 220 0.02
847 2 0.00
848 2 0.00
849 5 0.00
850 2 0.00
851 4 0.00
852 3 0.00
853 2 0.00
854 7 0.00
855 47 0.00
856 273 0.03
857 54 0.01
858 136 0.01
859 696 0.07
860 74 0.01
861 430 0.04
862 289 0.03
863 1340 0.13
864 1665 0.16
865 1670 0.16
866 218 0.02
867 800 0.08
868 184 0.02
869 5 0.00
870 19 0.00
871 12 0.00
872 1 0.00
873 6 0.00
874 6 0.00
876 11 0.00
877 7 0.00
878 3 0.00
879 4 0.00
880 4 0.00
881 19 0.00
882 15 0.00
883 21 0.00
884 22 0.00
885 10 0.00
886 7 0.00
887 1 0.00
888 9 0.00
889 5 0.00
890 6 0.00
891 5 0.00
892 2 0.00
893 2 0.00
894 11 0.00
895 7 0.00
896 12 0.00
897 10 0.00
898 14 0.00
899 13 0.00
900 11 0.00
901 20 0.00
902 10 0.00
903 12 0.00
904 25 0.00
905 18 0.00
906 6 0.00
907 10 0.00
908 13 0.00
909 12 0.00
910 2 0.00
911 5 0.00
912 17 0.00
913 22 0.00
914 19 0.00
915 3 0.00
916 2 0.00
917 16 0.00
918 9 0.00
919 4 0.00
920 10 0.00
921 6 0.00
923 7 0.00
924 1 0.00
925 6 0.00
926 5 0.00
927 5 0.00
928 2 0.00
930 8 0.00
931 7 0.00
932 2 0.00
933 1 0.00
934 2 0.00
935 4 0.00
936 12 0.00
937 16 0.00
938 9 0.00
939 7 0.00
940 12 0.00
941 3 0.00
942 4 0.00
943 4 0.00
944 1 0.00
945 2 0.00
946 4 0.00
947 3 0.00
948 9 0.00
949 4 0.00
950 1 0.00
951 1 0.00
952 2 0.00
953 3 0.00
954 4 0.00
955 12 0.00
956 10 0.00
957 13 0.00
958 3 0.00
959 1 0.00
960 2 0.00
961 3 0.00
963 1 0.00
964 1 0.00
966 3 0.00
967 6 0.00
968 9 0.00
969 2 0.00
970 16 0.00
971 7 0.00
972 12 0.00
973 11 0.00
974 8 0.00
975 8 0.00
976 6 0.00
977 3 0.00
979 2 0.00
980 2 0.00
981 6 0.00
982 1 0.00
983 13 0.00
984 6 0.00
985 12 0.00
986 17 0.00
987 13 0.00
988 11 0.00
989 18 0.00
990 21 0.00
991 4 0.00
992 3 0.00
993 3 0.00
994 1 0.00
995 1 0.00
996 3 0.00
997 1 0.00
998 3 0.00
999 2 0.00
1000 11 0.00
1001 7 0.00
1002 3 0.00
1003 3 0.00
1004 1 0.00
1005 4 0.00
1006 9 0.00
1007 9 0.00
1008 10 0.00
1009 8 0.00
1010 11 0.00
1011 27 0.00
1012 9 0.00
1013 2 0.00
1014 3 0.00
1015 18 0.00
1016 10 0.00
1017 19 0.00
1018 3 0.00
1020 1 0.00
1021 5 0.00
1022 7 0.00
1023 8 0.00
1024 6 0.00
1025 4 0.00
1026 5 0.00
1027 2 0.00
1028 2 0.00
1029 3 0.00
1030 5 0.00
1031 5 0.00
1032 15 0.00
1033 14 0.00
1034 17 0.00
1035 6 0.00
1036 13 0.00
1037 11 0.00
1039 3 0.00
1041 1 0.00
1043 5 0.00
1044 2 0.00
1045 1 0.00
1046 5 0.00
1047 5 0.00
1048 5 0.00
1050 2 0.00
1052 3 0.00
1053 2 0.00
1054 1 0.00
1055 4 0.00
1057 4 0.00
1058 3 0.00
1059 4 0.00
1060 2 0.00
1061 3 0.00
1063 1 0.00
1064 3 0.00
1065 3 0.00
1066 8 0.00
1067 3 0.00
1068 4 0.00
1069 8 0.00
1070 12 0.00
1071 13 0.00
1072 7 0.00
1073 6 0.00
1074 7 0.00
1075 8 0.00
1076 6 0.00
1077 3 0.00
1078 2 0.00
1080 5 0.00
1081 16 0.00
1082 8 0.00
1083 4 0.00
1084 3 0.00
1085 5 0.00
1086 5 0.00
1087 7 0.00
1088 3 0.00
1089 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (862 bp):
ATAGTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTAT
ACTTCAATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATC
CATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCATC
AATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAATCAAATTTATCTCTTTT
TATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAGCACAACCTTTAGTTTTCCAT
AATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGA
TTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTCCT
CCTTAATCTTTCACGAGATTTCGTGTGGAACCTAACCCATTAATGAGAAAGGCATTATATCTTTT
AACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAA
CCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCT
CCTAGGCATGATATCTGAAATAAAAAAAAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATA
TATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTA
CTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAA
ATTGTGTAGTATTAGTG
Found at i:5317524 original size:863 final size:862
Alignment explanation
Indices: 5313158--5320549 Score: 10442
Period size: 863 Copynumber: 8.6 Consensus size: 862
5313148 AATTATAACT
* * *
5313158 TGTTATAAGTTATAATATTATAAATTAATACACATGTATATAAAATCATACTACATTCTTATGTC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* *
5313223 ATATCAATTGTCATAAATATCTTCCTCAACGTCCTCCCGAACCCATTGAAATTTTGTAGTATTAG
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
* * *
5313288 TGATAGTTTCATATATGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTTTTTCAATGTCATCT
131 TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
** * * *
5313353 CTACTTCCATCTACGATGTCTATCAACTCTCTAGGGTATTACATAGCACAACATACAAACCCTCA
196 CTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCCTCA
* * * *
5313418 TCCATTGGATTGTGATAGTAAAAAAACTTTTTTCACTTAAGAATAAAATATATATGACTCATTCA
261 TCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* *** *
5313483 TCAACCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAATTAAATTTATCTATT
326 TCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTT
** * *
5313548 TTCATATCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACATAACCTTTCGTTTTCC
391 TTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTTCC
** * **
5313613 ATAATAATCTAACTTAATAATGTATGTAAGAATTCCATATTAATCTACATCTCTGTCCAAATGAT
456 ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
5313678 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTTG
521 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA--TTTTTTG
* * *
5313743 TCCTCCTTAATCTTTCACGAGATTTTGTGTGGAACCTAAACTCATTAATGAGAAATGCATTATAT
584 TCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATAT
** * ** * *
5313808 CTTTTAACAATTCTATTTCAACATTGAGAAAGGAATTTAACATCTTCACTAACTTCTCTTTCTCT
649 CTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACT
* *
5313873 CCAAACCTATTACACATGAATGGTGAAATAATTTGCATTAATGTCGAT------AATCACTTATT
714 CCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATT
* * * * * * *
5313932 TTTCTCCTAGAATGATATCTGAAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAAGTAACG
779 TTTCTCCTGGCATGATATCTGTAATAAAAAACAACAATTTTAGGAAGAAAATAGTTTAATTAATG
5313997 AATATATTGAATGACAACA
844 AATATATTGAATGACAACA
* * * * *
5314016 TGTTATAAGTAACAACATTATAAATTAATACATATGGATATAAAATCTTATTACATTCTTATCTC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* *
5314081 ATATCAATTGTCATAAATATATTCATCAACGTCCTCCCGAACCCAATGAAATTGTGTAGTATTAG
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
* * * ** *
5314146 TGATAG-TTCATATAAGTTTTCTGCTACAAAATGTAAAGAATCAGATCTAT-TTTTTATGTCGTC
131 TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCT-TGTTTCAATGTCATC
* * * *
5314209 TATACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTGTTACTGAGCACAACATACCAACCCTC
195 TCTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCCTC
*
5314274 ATCCATTGGATTGTGTCAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTC
260 ATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTC
* * * *
5314339 ATCAATCGTTGACCAATGAGAATTAATCGAGAGAAATTCACCGTTGTAAAACCAAATTAATC-CT
325 ATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTC-
* * * **
5314403 TTTTCATGCCTCGACTAGGGTTTACATCATCCCAGTCACACCGAAACAACACAACC-TTTCATTT
389 TTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTT
* *
5314467 CCATAATAATTTAACTTAATAATGTCCGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
454 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
* * *
5314532 ATGATTTTCCCTAGAACTAGCATAACTTGTAGTTGAAGAAGAAACTACTACCCCACAATTTTTTT
519 ATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTT
* * *
5314597 GCCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAGCCCATTAATGAGAAAGGAATTATA
583 GTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATA
* *
5314662 TCTTTTAACAATTCTATTTGGACATTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCAC
648 TCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
* *
5314727 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTTGATACCGCAAATCATTTAT
713 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTAT
* * *
5314792 TGTTCTCCTAGGCATGATATCTGTAATAAAAAAAAACAACAATTTCAGTAAGAAAATAGTTTAAT
778 TTTTCTCCT-GGCATGATATCTGTAAT---AAAAAACAACAATTTTAGGAAGAAAATAGTTTAAT
** * *
5314857 TAACAAATTTATTGAATGAAAACA
839 TAATGAATATATTGAATGACAACA
* *
5314881 TGTTATAAGTTATAATATTATAAATTAATACATATGGATTTAAAATCTTACTACATTCTTATGAC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* * * ** *
5314946 ATATCAATTTTCATAAATATATTCATCAACGTCTTCAGGAACCAATTGAAATTGTGTAGTATTAG
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
* *
5315011 TGATAGTTTCATCTAAGTTTTGTGCTACAAAACGTAAAGATTCATATCTTGTTTCAATGTCATCT
131 TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
* * **
5315076 CTACTTCCATCCCCGATATCCATCAAGTCTCTAGGGGTATTATTGAGCACAACATACCAACCCTC
196 CTACTTCCATCCCCGATGTCTATCAAGTCTCTA-GGGTATTACAGAGCACAACATACCAACCCTC
* * * *
5315141 ATCCATTGCATTGTTATAGTAAAAAAACTTGTTTCACTTAAGATGAAAATACATATGACTCATTC
260 ATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTC
* *
5315206 ATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTATAAAACAGAATTTATCTCA
325 ATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTC-
* * * * **
5315271 TTTT-ATGCCTTGAGTAGTGTTTAGATCAGCCCAGTCACACCGACACCACACAACCTTTCATTTT
389 TTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTT
* * * * * *
5315335 TCGTATTAATATAACTTAATAATGTCCGTAAGAATTCCATAATAATATACATCTCCCTCTAAATG
454 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
* ** * *
5315400 ATCATTGACCTTGGAACTAGTATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTGT
519 ATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTT-T
* * * **
5315465 GTCCTCCTTAATATTTCACGAGATTTTGTGTGGAACCTTAACCCA-T--T---AAACCCATTATA
583 GTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATA
** * *
5315524 TCTTTTAACAATTCTATTTGGATTTTGAGAAAGCCATTTAACATATTCACTAACTTCACTTCCAC
648 TCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
* * * * *
5315589 TCTAAACCTATTACACATGAATGGTGAATTAATTTTCATTGATGTCGATACCGTAACTCACTTTT
713 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTAT
* * * *
5315654 TTTTCTCCTGGCATGATATCTGAAATAAAAAAACAACAATTTTAGGAAGAAAACAATTTAACTAA
778 TTTTCTCCTGGCATGATATCTGTAAT-AAAAAACAACAATTTTAGGAAGAAAATAGTTTAATTAA
5315719 TGAATATATTGAATGACAACA
842 TGAATATATTGAATGACAACA
*
5315740 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCATACTACATTCTTATGTC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* * * *
5315805 ATATCAATTGTCATAAATATCTTCCTCAGCGTCCTCCCGTACCCATTGAAATTTTGTAGTATTAG
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
*
5315870 TGATAGTTTCATCTAAGTTTTGTGCTACAAATTGTAAAGATTCAGATCTTGTTTCAATGTCATCT
131 TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
* * *
5315935 CCACTTCCATCCCCGATGTCTATCAAGTCTCT-GGGTATTAAAGAGCAGAACATACCAACCCTCA
196 CTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCCTCA
*
5315999 TCCATTGGATTATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
261 TCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* * * *
5316063 TCAATCGTTGACCAGTGTGAATTAATTGAGAGAAATTCACCATTATAAAACTGAATTTATCTCTT
326 TCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTT
* * * *
5316128 TTTATGCCTCGAGTAGTGTTTACATGAGCCCAGTCACACCGAAACAACACATCCTTTAGTTTTCC
391 TTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTTCC
* * * *
5316193 CTAATAATGTAACTTAATAATGTCCGTAAAAATTCCATAATAATCTACATCTCCCTCAAAATGAT
456 ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
* * *
5316258 GATTGTCCCTGGAACTAGCATAACTTCTAGTTGAAGAAGTAACTACTACTCCACAATTTTGTGTC
521 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTC
* * *
5316323 CTGCTTAATCTTTCATGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATTATATCT
586 CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCT
* * **
5316388 TTTAAAAATTCTATTTGGACTTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTTTACTCC
651 TTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCC
*
5316453 AAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCACAAATCACTTATTTT
716 AAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTT
* * * * *
5316518 TCTCCTGGTATTATATCTGTAATAAAAAAGAAAAAAATTTAGGAAGAAAATAGTTTAATTAATGA
781 TCTCCTGGCATGATATCTGTAATAAAAAA-CAACAATTTTAGGAAGAAAATAGTTTAATTAATGA
5316583 ATATATTGAATGACAACA
845 ATATATTGAATGACAACA
* * * *
5316601 TGTTATAAATTATAATTTTATAAATTAATACATATGGATATAAAATCATACTATATTCTTATGTC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* * * * * *
5316666 ATATCAATTATCATAAATATATTAATCAACGTCCTCCTGAACCCATTGAAACTT-TATAGTATTT
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAA-TTGTGTAGTATTA
*
5316730 GTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATT
130 GTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATC
* * * * * *
5316795 TGTACTTCCATCCCCGTTGTCTATCAAGTCTTTGAGGGTATTACATAGGACAACATACCAAACCT
195 TCTACTTCCATCCCCGATGTCTATCAAGTCTCT-AGGGTATTACAGAGCACAACATACCAACCCT
* * * * * *
5316860 CATCCTTTGGATTGTGACCGTAAAAAAACTTGTTTCATTTAAGAATAAAAGACATGTGACTCATT
259 CATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATT
* *
5316925 CATCAATCGTTGACCAGTGTGAATTAATCGAAAGAAATTCACCATTGTAAAACCGAATTTATCTC
324 CATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTC
* *
5316990 TTTTCATGCCTCGAGTAGTGTTT-CATCATCCCAGTCACACGGAAACAACACAACCTTTTGTTTT
389 TTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTT
* *
5317054 CCATAATAATCTAACTTAATAATGTCCCTAAGAATTCCATAATAATCTACATCTCCCTCAAAATG
454 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
*
5317119 ATGATTTTCCCTGGAACTATCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAAGTTTTTT
519 ATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTT
* * *
5317184 GTCGTCCTTAATCTTTCACGAGATTTCGTGTGGACCCTAAACCCATTAATGAGAAAGCCATTATA
583 GTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATA
* * * *
5317249 TCTTTTAATAATTCTATTTGGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTGTACCAC
648 TCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCAC
* * * *
5317314 TCCAAACATATTACACATGAATGATGAATTAATTTGTATTGATGTTGATACCGCAAATCACTTAT
713 TCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTAT
* * * *
5317379 TGTTCTTCTGGGCATGATATCTGTAATAAAAAACAACAATTTTAGTAAGAAAATGGTTTAATTAA
778 TTTTCTCCT-GGCATGATATCTGTAATAAAAAACAACAATTTTAGGAAGAAAATAGTTTAATTAA
*
5317444 CGAATATATTGAATGACAACA
842 TGAATATATTGAATGACAACA
* *
5317465 TGTTGTAAGTTATAATACTT-TAAATTAATACATATTGATAT-AAATCTTACTACATTCTTATGT
1 TGTTATAAGTTATAATA-TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGT
* * *
5317528 CATATTAATTGTCATAAATATCTTCTTCAACGTCCTCCTGAACCCATTGAAATTGTGTAGTATTA
65 CATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTA
* * * * *
5317593 GTGATATTTTCATCTAAGTTTTGTGCTACAAAAGGTAAAGATTCA-ACTTTTGTTTCATTGTGAT
130 GTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGA-TCTTGTTTCAATGTCAT
* * *
5317657 CTCTACTTCTATCCCCGATGTCTATCAAGTCTCTAGGGGTACTACAGAGCGCAACATACCAACCC
194 CTCTACTTCCATCCCCGATGTCTATCAAGTCTCTA-GGGTATTACAGAGCACAACATACCAACCC
*
5317722 TCATCCATTGGATTATGACAGTAAAAAAA-TTGTTTCACTTAAGAAGAAAATACATATGACTCAT
258 TCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCAT
* * * * **
5317786 TCATCAATCGTTTACCAATGTTAATTAATCGAGAGAAATTCACTACTGTAAAATGGAATTTATCT
323 TCATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCT
*
5317851 CTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCAT-T
388 CTTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTT--TGT
*** * *
5317915 TTTTTGTAATAATCTAACTTAATAATGTCCGTAAGAATTCTATAATAATCTACATCTCCCTCAAA
451 TTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAA
* * * * *
5317980 ATGATGATTCTCCCTGGAACTAGCATAACTTCTAGTTGAAGAATTAACTACTACTTCACAATTCT
516 ATGATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTT
* * * * * **
5318045 GTGTTCTGCTTAATCTTTGACGAGATTTCGTGTGGAACCTGAACCCATTAATGAGAAAGGCATCG
581 TTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTA
*
5318110 TATCTTTTAAAAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCC
646 TATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCC
*
5318175 ACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACCT
711 ACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTT
* *
5318240 ATTTTTCTCCTGGTATGATATCTATAATAAAAAAGCAACAATTTTAGGAAGAAAATAGTTTAATT
776 ATTTTTCTCCTGGCATGATATCTGTAATAAAAAA-CAACAATTTTAGGAAGAAAATAGTTTAATT
5318305 AATGAATATATTGAATGACAACA
840 AATGAATATATTGAATGACAACA
* * *
5318328 TGTTATATA-TTATAATCTTATAAATTAATACATATAGATATAAAATCTTGCTACATTCTTATGT
1 TGTTATA-AGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGT
5318392 CATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCA-TGTAAATTGTGTAGTATT
65 CATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTG-AAATTGTGTAGTATT
* * * * *
5318456 AGTGATAGTTTCATATAAGTTTTAG-GCCACAAAAGGTAAAGATTCAAATTTTGTTTCAATGTCA
129 AGTGATAGTTTCATCTAAGTTTT-GTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCA
* * * *
5318520 TCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGAAAAATATATCAACCC
193 TCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCC
* * *
5318585 TCATCCATTGTATTATGATAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCAT
258 TCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCAT
* *
5318650 TCATCAATCGTTGACCAATATGAATTAATCGAGAGAAATTCACCATTGTAAAA-CGGA---A---
323 TCATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCT
**
5318708 --TTT-AT--CTC---T--T-TTT--AT--G-CC--TCACACCGAAACAACACAACCTTTCATTT
388 CTTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTT
*** * * * *
5318755 TTTGTAATAATCTAACTTAATAATGTCTGTAAGAATTCTATAATAATATGCATCTCCCTCCAAAT
453 TCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAAT
* * * * * *****
5318820 GATGATTGTCCTTGGAACTAACATAACTTGTAGTTGAAGAAGTAACTACTACTCAAAAAAAAAAA
518 GATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTC-CACAATTTTT
*
5318885 T-TCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCGTTAATGAGAAAGGCATTAT
582 TGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTAT
* *
5318949 ATCTTTTAACAATTCTATTTGGATCTTGAGAAAGCCCTTTAACATCTTCACTAACTTCTCTTCCA
647 ATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCA
* * * * *
5319014 CTCCAAACCTATTACACATGAATGGTGGATTAATTTTCATTGATGTTGATACCACAAATCACTAA
712 CTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTA
* *
5319079 TTTTTCTCCTAGCATGATATCTGTAATAAAAAAGCAACAATTTTAGGAAGAAAAAAGTTTAATTA
777 TTTTTCTCCTGGCATGATATCTGTAATAAAAAA-CAACAATTTTAGGAAGAAAATAGTTTAATTA
5319144 ATGAATATATTGAATGACAACA
841 ATGAATATATTGAATGACAACA
** *
5319166 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATGATACTAAATTCTTATGTC
1 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
* *
5319231 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCTTTGAAATTTTGTAGTATTAG
66 ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
* * *
5319296 TGATAGTTTAATCTATGTTTTGTACTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
131 TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
* * *
5319361 CTACTTCCATCCCCGATGTCTATCAAGTCTCTGGGGTATTACAGAACATAACATACCAACCCTCA
196 CTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCCTCA
* * *
5319426 TCCATTGGATTGTGATAGT-AAAAAA-TTGTTTTACTTGAGAAG--AAT-CATATGACTCATTCA
261 TCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
* * *
5319486 TCAATCGTTGAGCAGTGTGAATTCATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTT
326 TCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTT
*
5319551 TTCATGCCTCGAGTAGTGTTTACATCAGCCCAATCACACCGAAACAACACAACCTTTTGTTTTCC
391 TTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTTCC
*
5319616 ATAATAATCTAACTTAATAATGTCCCTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
456 ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
* * *
5319681 GATTTTCCCTGGAACTATCATATCTTATAGTTGAAGAAGTAACTACTACTCCACAATTTTTTTGT
521 GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAA-TTTTTTGT
* * *
5319746 CCTCCTTAATCTTTCACGAGATTTCGTTTGGAACCTAAACCCATCAATGAGAAAGGCATTATATA
585 CCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATC
* * * * * *
5319811 TATTAAAAATTCCATTTGGACCTTGAGAAAGGCATTTAACATATTCACTAACTTCTCTTTCACTC
650 TTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
* ** * * * *
5319876 CAAACCTATTACACATGAATGGTGGATTAATTTGTGTTGATGTTGATACTGCAAATCACTTACTG
715 CAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTT
* * * * * ** *
5319941 TTATACTAGGCATGATATATGCAATAAAAAACAACAATTTTAGAAAGAAAACGGGTTAATTAATG
780 TTCTCCT-GGCATGATATCTGTAATAAAAAACAACAATTTTAGGAAGAAAATAGTTTAATTAATG
*
5320006 GATATATTGAATGACAACA
844 AATATATTGAATGACAACA
* *
5320025 TGTTATAAGTTATAATACTT-TAATTTAATACATATGGATATAAAATATTACTACATTCTTATGT
1 TGTTATAAGTTATAATA-TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGT
* *
5320089 CATATCAATAGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTAAAATTGTGTAGTATTA
65 CATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTA
* * * * *
5320154 GTGATATTTTCATCTAGGTTTTGTGCTACAAAAGGTAAAGATTTAAATCTTGTTTCAATGTCATC
130 GTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATC
* * * *
5320219 CCTACTTCCATCCCCGATGCCTATCAAATCTCTGGGGGTATTACAGAGCACAACATACCAACCCT
195 TCTACTTCCATCCCCGATGTCTATCAAGTCTCT-AGGGTATTACAGAGCACAACATACCAACCCT
* * * **
5320284 CATACATTGGATTATGACAATAAAAAAACTTGTTTCACTTCTGAAGAAAATACATATGACTCATT
259 CATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATT
* * * *
5320349 CATCAATCATTGACCAGTGTGAATTAATCGAGAGAATTTCACCATTTTAAAACCGAATTTATCTC
324 CATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTC
* ** * * * *
5320414 TTTTTATAACTCGAGTAATGTTTACATCAGCACAGTCACACCGAAACAACACAACATTTAGTTTT
389 TTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTT
* * *
5320479 GCTTAATAATCAAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
454 CCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATG
5320544 ATGATT
519 ATGATT
5320550 GTCTGGAACC
Statistics
Matches: 5838, Mismatches: 609, Indels: 167
0.88 0.09 0.03
Matches are distributed among these distances:
833 61 0.01
834 6 0.00
836 15 0.00
837 9 0.00
838 620 0.11
839 30 0.01
841 2 0.00
842 4 0.00
843 2 0.00
844 2 0.00
845 3 0.00
846 3 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 3 0.00
852 3 0.00
853 2 0.00
854 2 0.00
855 221 0.04
856 385 0.07
857 325 0.06
858 260 0.04
859 694 0.12
860 75 0.01
861 443 0.08
862 303 0.05
863 771 0.13
864 758 0.13
865 401 0.07
866 77 0.01
867 195 0.03
868 159 0.03
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (862 bp):
TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
ATATCAATTGTCATAAATATCTTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAG
TGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAGATTCAGATCTTGTTTCAATGTCATCT
CTACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTATTACAGAGCACAACATACCAACCCTCA
TCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAGAAAATACATATGACTCATTCA
TCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTCACCATTGTAAAACCGAATTTATCTCTT
TTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTTGTTTTCC
ATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGAT
GATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACTCCACAATTTTTTGTC
CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGCATTATATCT
TTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCC
AAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTT
TCTCCTGGCATGATATCTGTAATAAAAAACAACAATTTTAGGAAGAAAATAGTTTAATTAATGAA
TATATTGAATGACAACA
Found at i:5324922 original size:862 final size:862
Alignment explanation
Indices: 5322637--5325933 Score: 4781
Period size: 863 Copynumber: 3.8 Consensus size: 862
5322627 TACATATGAC
* * *
5322637 TCATTTTCTGTAATAATTTAACTTAATAATGTCTATAAGAATTCCATAATAATCTATATCTCCCT
1 TCATTTTCTGTAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACATCTCCCT
* * *
5322702 CCAAATGATGATTTTCCCTGGAACTAGCATAACCTGTAGTTGAAGAAGTAACTACTACACCATAA
66 -CAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCACAA
* * * *
5322767 TTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATTTTGAACCTGAACCCATTAATGAGAAAGG
130 TTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGG
* ** *
5322832 TATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGTTACTTAACATCTTCACTAACTTCT
195 CATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCT
* * *
5322897 CTTCCACTCCAAACCTATTACAGATGAATGGTGAATTAATTTGCATTGATGTTGATACCACAAAT
260 CTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAAT
* * * *
5322962 CACTTATTTTTCTCCTGGAATGATATCTGAAATAAAACAACAACAATTTTAGTAGGAAAATGGTT
325 CACTTATTTTTCTCCTGGCATGATATCTGAAATAAAA-AACAACAATTTTAATAAGAAAATAGTT
* * *
5323027 TAATTAATGAATATATTGAATGACAATATGTTATGAGTTATAATATTATAAATTAATAAATATGG
389 TAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGG
* * *
5323092 ATATAAAATCTTACTACATTCTTATGTCATATCAATTGTTATAAATATATTCATTAACGTCCCCC
454 ATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATATTCATCAACGTCCTCC
* * *
5323157 CGAACCAATTGAAATTGTGTAA-TATTAGTGATAGTTGCATCTAAGTTTTTTGCTACAAAATGTA
519 CGAACCCATTGAAATTGTG-AAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTA
* * *
5323221 AAGATTCAGATCTTGTTTTAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTTTGGGG
583 AAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTAGGG
* * **
5323286 TATTACTGAGCACAACATACCAACACC-CATCCATTGGATTGTGACCGTAAAAAAACTTGTTTCA
648 TATTACAGAGCACAACATACCAAC-CCTCATCCATTGGATAGTGATAGTAAAAAAACTTGTTTCA
* * *
5323350 CTTGAGAAGAAAATACATATGACTAATTCATCAACCGTTGACCAGTGTGAATTAATCGAGAGAAA
712 CTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAA
* * *
5323415 TTCACCATTGTAAAATTGAATTTATCTCTTTTTATGCCTCGAGAGTAGTGTTTACATCAGTCTAG
777 TTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTC--GAGTAGTGTTTACATCAGCCCAG
* * *
5323480 TCACACCGAAATAGCAC-AACCT
840 TCACACCGAAACAACACAAACTT
* * *
5323502 TAAGTTTT-TCATAATAATCTAACTTAATAATGTCTGTAAGAATTACATAATAATCTACATCTCC
1 TCA-TTTTCT-GTAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACATCTCC
*
5323566 CTCAAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCAT
64 CTC-AAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCAC
* * * * * *
5323631 AA-TTTTGTGTTCTGCTTAATCTTTCTCAAGATTTTGTGTGGAACCGGAAA-CCATTAATGAGAA
128 AATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACC-TAAACCCATTAATGAGAA
5323694 AGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACT
192 AGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACT
* * *
5323759 CCTCTTCCACTCCAAACCTATTACACATAAATGGTGAATTAATTTGCATTGATGTCAATACCGCA
257 TCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCA
* ** * *
5323824 AAACACTTATTTTTCTCCTATACATGATATCTGTAAA-AAAAAGA-AACAATTATAAGAAGAAAA
322 AATCACTTATTTTTCTCCT-GGCATGATATCTG-AAATAAAAA-ACAACAATTTTAATAAGAAAA
*
5323887 TAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAACACA
384 TAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACA
** * * *
5323952 TATGGATATAAAATCACACCACATTCTTATGTCATATCAATTGTCATAAATATCTTGATCAACGT
449 TATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATATTCATCAACGT
* * * *
5324017 CCTCCCGAACCCATTGAAATTTTGTAGTATTAGTGATAGTTTCATCTTAGTTTTGTCCTACAAAA
514 CCTCCCGAACCCATTGAAATTGTGAAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAA
5324082 TGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCT
579 TGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCT
* * *
5324147 GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAATGAGAGTAAAAAAACTTGTT
644 AGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAGTGATAGTAAAAAAACTTGTT
*
5324212 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTATGAATTAATCGAGAG
709 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
*
5324277 AAATTAACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
774 AAATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* *
5324342 TTTACACCGAAACAACACAAACTT
839 GTCACACCGAAACAACACAAACTT
* *
5324366 TCATTTTTTGTAATAATCTAACTTAATAATGT-TCGTAAGAATTCCATAATAATATACATCTCCC
1 TCATTTTCTGTAATAATCTAACTTAATAATGTCT-GTAAGAATTCCATAATAATCTACATCTCCC
* * * *
5324430 TCTAAATGATGATTGTCCTTGGAACTAACATAACTTGTAGTTTAAGAAGTAACTACTACTCCACA
65 TC-AAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCACA
5324495 ATTTTT-TGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAG
129 ATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAG
* * *
5324559 G-ATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGGCATTTTACATGTTCACTAACTTC
194 GCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTC
* * * * * * *
5324623 TCTTCCACTCCAAACCTATTACACACGATTGGTGAAATAATCTT-TATTTATGTTGATATCGCAA
259 TCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT-TTGCATTGATGTCGATACCGCAA
* * * * **
5324687 ATCACTTATTGTACTCCTGGGCATGATATCTGTAATAAAAAACAATAATTTTAATAAGAAAACGG
323 ATCACTTATTTTTCTCCT-GGCATGATATCTGAAATAAAAAACAACAATTTTAATAAGAAAATAG
* *
5324752 TTTAATTAATGAATATGTTGAATGACAACATGTTATAAGTTATAATACTT-TAAATTAATACATG
387 TTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATA-TTATAAATTAATACATA
* *
5324816 TGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCATCAACGTCG
451 TGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATATTCATCAACGTCC
* * * * *
5324881 TCCCAAACCCTTTGAAATTTTGAAGTATTAGTGATAGTTTCATCTAAGTTTTTTGCTACAAAATA
516 TCCCGAACCCATTGAAATTGTGAAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAATG
* * * *
5324946 TAAAGATTCAGATCTTGTTTCAACGTCATCTTTACATCCATCCCCAATGTCTATCAAGTCTCTAG
581 TAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTAG
5325011 GGTATTACAGAGCACAACATACCAACCCTCATCCATTGGA-ATGTGATAGT-AAAAAACTTGTTT
646 GGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATA-GTGATAGTAAAAAAACTTGTTT
* *
5325074 CACTTAAGAAGAAAATACATATGACACATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGT
710 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * * * * * *
5325139 AATTCACCATTTTAAAACCTAATTTCTCTTTTTTTATACCTCGAGTAGTGCTTACATAAGCCCAG
775 AATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * *
5325204 TCACACCGAAACAAGAGAACCTT
840 TCACACCGAAACAACACAAACTT
*
5325227 TCATTTTCCT-TAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCC
1 TCATTTT-CTGTAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACATCTCCC
** * * *
5325291 TACAAATGATGATTGTCCCTATAACTAGCCTAACTTGTAGTTGAAGAAGCAACTACTACTCCACA
65 T-CAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCACA
* * * *
5325356 ATTTTTGTGTACTCCTTAATCTTTCACTAGATTTCGTTTGGAACCTGAACCCATTAATGAGAAAG
129 ATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAG
* * * * * *
5325421 GCATTATATCTTTTAACAATTCTATTTAGACCTTGTGAAACCCATTTTACATATTCATTAACTTC
194 GCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTC
* *
5325486 TCTTCCACTCCAAACCTATAACACATGAATGGTGAATTAATTTTCATTGATGTCGATACCGCAAA
259 TCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAA
* *
5325551 TCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAAACAACAATTTTAGTAAGAAAATAGT
324 TCACTTATTTTTCTCCTGGCATGATATCTGAAAT-AAAAAACAACAATTTTAATAAGAAAATAGT
5325616 TTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATG
388 TTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATG
* *
5325681 GATAAAAAATCTTACTACATTCTTATGTCTTATCAATTGTCATAAATATATTCATCAACGTCCTC
453 GATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATATTCATCAACGTCCTC
* * * * * **
5325746 CCGAACCCATTAAAATTGTGTAGTATTTGTGATAGTTTCATATAACTTTTGTGCTACAATTTGTA
518 CCGAACCCATTGAAATTGTGAAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTA
* * * * * *
5325811 AAGATTCAGATCTTGTTTTATTGTCGTCTATACTTCCATCCCCGATATCTATCAAGTGTCTAAGG
583 AAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTAGGG
* * *
5325876 TATTACTGAGCACAACATACCAACCCTAATCCATTGGATTGTGATAGTAAAAAAACTT
648 TATTACAGAGCACAACATACCAACCCTCATCCATTGGATAGTGATAGTAAAAAAACTT
5325934 ATAAATTAAT
Statistics
Matches: 2180, Mismatches: 223, Indels: 59
0.89 0.09 0.02
Matches are distributed among these distances:
861 273 0.13
862 521 0.24
863 626 0.29
864 23 0.01
865 601 0.28
866 133 0.06
867 3 0.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (862 bp):
TCATTTTCTGTAATAATCTAACTTAATAATGTCTGTAAGAATTCCATAATAATCTACATCTCCCT
CAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTACTACACCACAAT
TTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTAATGAGAAAGGC
ATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTC
TTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATC
ACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAACAACAATTTTAATAAGAAAATAGTTTA
ATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTAATACATATGGAT
ATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATATTCATCAACGTCCTCCCG
AACCCATTGAAATTGTGAAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAATGTAAAG
ATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTAGGGTAT
TACAGAGCACAACATACCAACCCTCATCCATTGGATAGTGATAGTAAAAAAACTTGTTTCACTTA
AGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCA
CCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACAC
CGAAACAACACAAACTT
Found at i:5327314 original size:21 final size:21
Alignment explanation
Indices: 5327288--5327332 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5327278 GATTTCTGGG
* *
5327288 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
5327309 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
5327330 CAA
1 CAA
5327333 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:5327402 original size:23 final size:22
Alignment explanation
Indices: 5327358--5327402 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
5327348 AATGCCAGAG
* *
5327358 GGGAACTGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
5327380 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
5327403 AAATGTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:5328470 original size:30 final size:30
Alignment explanation
Indices: 5328436--5328714 Score: 506
Period size: 30 Copynumber: 9.3 Consensus size: 30
5328426 GGTTCTTCGG
*
5328436 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328466 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328496 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328526 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
5328556 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328586 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328616 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
5328646 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
* *
5328676 GACCTCTGGACAGTTACCG-GGGTCTTTGT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5328705 GACCTCTGGA
1 GACCTCTGGA
5328715 TAGGTCCTTC
Statistics
Matches: 242, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
29 18 0.07
30 224 0.93
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (30 bp):
GACCTCTGGACAGTTACCGAGGATCTTTAT
Found at i:5332020 original size:21 final size:21
Alignment explanation
Indices: 5331994--5332038 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
5331984 TATTTTTGGG
* *
5331994 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
5332015 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
5332036 CAA
1 CAA
5332039 ACGACAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:5332108 original size:23 final size:22
Alignment explanation
Indices: 5332064--5332108 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
5332054 AATGCCAGAG
*
5332064 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
5332086 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
5332109 AAATGTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:5333167 original size:31 final size:31
Alignment explanation
Indices: 5333109--5333173 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
5333099 AGAGTCGAGG
*
5333109 GTTTACCTATGTCTTTCGAGACATATGGAAA
1 GTTTACCTAGGTCTTTCGAGACATATGGAAA
* * *
5333140 GTTTACCTAGGT-TCTTCGGGACCTATGGACA
1 GTTTACCTAGGTCT-TTCGAGACATATGGAAA
5333171 GTT
1 GTT
5333174 ACGAGGATCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (31 bp):
GTTTACCTAGGTCTTTCGAGACATATGGAAA
Found at i:5333191 original size:29 final size:30
Alignment explanation
Indices: 5333159--5333342 Score: 272
Period size: 29 Copynumber: 6.3 Consensus size: 30
5333149 GGTTCTTCGG
*
5333159 GACCTATGGACAGTTA-CGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
5333188 GACCTCTGGATAGTTA-CGAGG-TCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
*
5333216 GACCTTTGGACAGTTACCGAGGATCTTT-T
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5333245 GACCTCTGGACAGTTACCGAGGATC-TTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5333274 GACCTCTGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
* * *
5333304 GACTTCTGGACAGTTACC-AGGGTCTTTGT
1 GACCTCTGGACAGTTACCGAGGATCTTTAT
5333333 GACCTCTGGA
1 GACCTCTGGA
5333343 TAGGTCCTTC
Statistics
Matches: 142, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
28 23 0.16
29 93 0.65
30 26 0.18
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (30 bp):
GACCTCTGGACAGTTACCGAGGATCTTTAT
Found at i:5333289 original size:86 final size:88
Alignment explanation
Indices: 5333159--5333342 Score: 279
Period size: 86 Copynumber: 2.1 Consensus size: 88
5333149 GGTTCTTCGG
* *
5333159 GACCTATGGACAGTTACGAGGATCTTTATGACCTCTGGATAGTTA-CGAGG-TCTTTATGACCTT
1 GACCTCTGGACAGTTACGAGGATCTTTATGACCTCTGGACAGTTACCGAGGATCTTTATGA-CTT
5333222 -TGGACAGTTACCGAGGATCTTT-T
65 CTGGACAGTTACC-AGGATCTTTGT
5333245 GACCTCTGGACAGTTACCGAGGATC-TTATGACCTCTGGACAGTTACCGAGGATCTTTATGACTT
1 GACCTCTGGACAGTTA-CGAGGATCTTTATGACCTCTGGACAGTTACCGAGGATCTTTATGACTT
*
5333309 CTGGACAGTTACCAGGGTCTTTGT
65 CTGGACAGTTACCAGGATCTTTGT
5333333 GACCTCTGGA
1 GACCTCTGGA
5333343 TAGGTCCTTC
Statistics
Matches: 90, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
86 34 0.38
87 24 0.27
88 32 0.36
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (88 bp):
GACCTCTGGACAGTTACGAGGATCTTTATGACCTCTGGACAGTTACCGAGGATCTTTATGACTTC
TGGACAGTTACCAGGATCTTTGT
Found at i:5339442 original size:857 final size:858
Alignment explanation
Indices: 5334015--5355031 Score: 12985
Period size: 863 Copynumber: 24.1 Consensus size: 858
5334005 GGGTGTTACA
* * * * *
5334015 GTAAAGATTTAGATATTGTTTCATTGTCATCCCTACTTCCATCCCCGATGCCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5334080 GGGATATTACAGAGCACAACATACCAACCCTCTTCCATTGGATTGTGACCGTAAAAAAACTTGTT
66 GGG-TATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTT
* * * * *
5334145 TCATTTATGAAG-AAATAC--ATGACCCATTCATTAATCGTTCACCAGTGTGAATTAATCGAGAG
130 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
* ** * * *
5334207 AAATTCACCATTTTAAAACTTAATTTTTCTCTTTTTATACCTCGAGTATTGTTTACATCAGCCCA
195 AAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * * * * * *
5334272 ATAACACCGAAACATCAAAACCTTTCATTTTCCTTAATAATCTAACTTAATAATGTCCGAAAGAA
260 GTCACACCGAAACA-CACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAA
* * *
5334337 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTTTCTCTGGAACTAGCATAACTTGTTGTT
324 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTT
* *
5334402 GAAGAAGTAAC-ACTTACTCCACAATTTTT-TGTCCTCCTTAATCTTTCACGGGATTTCGTGTGA
389 GAAGAAGTAACTAC-TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTG-
* * *
5334465 AACCTAAACCCATTAATGAGAAAGACATTATTTCTTTTAACAATTCTATTTGGACCTTGAGAAAG
452 AACCTGAACCCATTAATGAGAAAG--GTTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
*
5334530 GCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
* ** * **
5334595 TTGCATTGATGTTGATACTGCAAATCACTTATTGTTCTCCTGGGCATGATATCT-TTA-AAAAAA
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGATATCTGAAATAAAAAA
* ** * * *
5334658 CAAAAATTTTAGTAAGAAAACAGTTTAATTAAAGAAAATACTGAATGACAACATGTTATAAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
* *
5334723 TAATATTTTAAATTAATACATATGGATATAAAATCTTACTACATTCTTATCTCATATCAATTGTC
709 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* * * *
5334788 ATAAATATCTTCATCAATGTCTTCCCGAACCCATTGAAATTGTGTAGTATTAGAGATATTTTCAT
774 ATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
*
5334853 CTAAGTTTTGTGCTACAAATG
838 CTAAGTTTTGTGCTACAAAAG
* * * *
5334874 GTAAAGATTTAGATCTTGTTTCATTGTCATCCCTACTTCCATCCCCGATGCCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5334939 GGGATATTACAGAGAACAACATACCAACCCTC-TCCATTGGATTGTGACCGTAAAAAAACTTGTT
66 GGG-TATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTT
* * * * *
5335003 TCACTTATGAAGAAAATACATATGACCCATTCATTAATCGTTCACCAGTGTGAATTAATCGAGAT
130 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
* ** * * * *
5335068 AAATTCACCATTTTAAAACTTAATTTTTCTCTTCTTATACCTCGAGTATTGTTTACATCAGCCCA
195 AAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * * * * *
5335133 AT-ATCAACGAAACATCAAAACCTTTCATTTTCCTTAATAATCTAACTTAATAATGTCCGTAAGA
260 GTCA-CACCGAAACA-CACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
*
5335197 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTATCATAACTTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
* ** *
5335262 TGAAGAAGTAACTACTACTCCAAAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTAAGTGTGA
388 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTG-
*
5335327 AACGTGAACCCATTAATGAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
452 AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
* *
5335392 CCATTTAACATCTTCACCAACTTCTCTTCCACTCCAAACCTATTTCACATGAATGGTGAATTAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
* * *
5335457 TTGCATT-ATTCTCGATATCACAGATCA-TTATTTTTCTCCTGGC---ATATCTGAAA-AAAAAA
580 TTGCATTGA-TGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAA
***
5335516 CAACAATTTTAGTAAGAAAACAATTTAATTAATGAATATA-TGAATG---ACATGTTATAAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
* * *
5335577 TAATATTATAAATTAATACATATGGATGT-AAATCTTA-TACTTTCTTATGTCATATCAA-TGTT
709 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* * ** *
5335639 ATAAATATCTTCATCAACATCCTCTCGAACGAATTGAAATTGTGTAGTACTAGTGATAG-TTCAT
774 ATAAATATCTTCATCAACGTCCTC-CCAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
5335703 CT--GTTTTGTGCTACAAAAG
838 CTAAGTTTTGTGCTACAAAAG
*
5335722 GT-AAGATT----TC-TGTTTTCAATGTCA--TCTACTTCCAT-CCCGATGTCTATCAAGTCACT
1 GTAAAGATTCAGATCTTG-TTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCT
* * * *
5335778 GTGGGTATTCCAAAGCACAACATACCAACTCTCATCCA-TGGATTGTGACAAT-AAAAAACTTGT
65 G-GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGT
* * *
5335841 TTCACTTAAGAAG-AAATCCATA--A-TACATTCGTCAATCGTTGACTAGTGTGAATTAAT-GAG
129 TTCACTTAAGAAGAAAATACATATGACT-CATTCATCAATCGTTGACCAGTGTGAATTAATCGAG
* * * *
5335901 AGAAATTCACCATTGT-AAACCGAATTTATC-CCTTTTATGCCTCGAGTATTGTTTACATAAGTC
193 AGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCC
* * ** * * * *
5335964 CAGTCACA-TGAAATA-GTAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTTCGTAAGA
258 CAGTCACACCGAAACACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* *
5336027 ATTCCATAATAATCTACA-CTTCCCTCCAAATGATGATTGTCCCTAGAAATAGCATAACTTGTAG
323 ATTCCATAATAATCTACATC-TCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAG
* *
5336091 TTGAAGAAGTAACTACTACTCCACAATTTTT-TGTCCTCCTTAATCTTTCACGAGATTTTGTGTG
387 TTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTG
* *
5336155 CAACTTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGAACCTTGAGAAA
452 -AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAA
* * **
5336220 GACATTTAAGATCTTCACTAACTTCTC-T--A--CC--ACC-----C-CA--AA-CCT--ATTAA
514 GCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAA
* * * ** *
5336267 TTTGCATTGATTTCAATACCGCAAATGTCTTATTTTTCTCCTAGGCATGATAAT-TGTAATAAAA
579 TTTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGAT-ATCTGAAATAAAA
* * * *
5336331 AACAACAACTTTAGTAAGAAAATGGTTTAATTAATTAATATATTGAATGACAACAAGTTTTAAGT
642 AACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGT
* * *
5336396 TATAATATTATAAATTAATATATATGGATATAAAATCTTACTACATTCTTATGTCTTATAAATTG
707 TATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTG
* * *
5336461 TCATAAATATC-TCATCAATGTCCTCCCGAATCCATTGAAATTGTGTAATATTAGTGATAGTTTC
772 TCATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTC
*
5336525 ATCTAAGTTTTTTGCTACAAAAG
836 ATCTAAGTTTTGTGCTACAAAAG
*
5336548 ATAAAGATTCA-ATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAG--TCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
*
5336610 GGGTATTAC--AGCAC-A-A-ACCAAACCCTCATCCATTGGA-T-TGATAGTAAAAAAA---GTT
66 GGGTATTACAGAGCACAACATACC-AACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTT
*
5336665 TCACTTAAGAAGAAAATACATATGA-TCA-TCATCAA--GCTGACCAGTGTGAATTAATCGAGAG
130 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
* * * *
5336726 AAATTCACCTTTGTAAAACCGAATTTATCACTTTTTATGCCTCGCGGAGTGTTTACATCAGCCCA
195 AAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* ** *
5336791 GTCACACCGAAACAACACAA-TCTTTCGTTTTCTGTAAT--T-TAACTTAATAATGTATGTGAGA
260 GTCACACCGAAAC-ACACAACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* *
5336852 ATTCC---ATAATCT--ATCTCCCTCCAAATGATGATTTTCCCTGGAACTAGCATAACCTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
5336912 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCAC--GATTT-GTTATG
388 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTT-TG
*
5336974 AACCTGAACCCATTAATGGGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
452 AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
* * * *
5337039 CCATTTAACATCTTCACTAGCTTTTCTTCAACTCCAAACCTATTACACATGAATGGTGAATAAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
*
5337104 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAAG
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAA-
* * * * *
5337169 CATCAATTTTAGTAGGAAAATGGTTTAATTAATAAATATATTGAATGACAATATGTTATGAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
* * *
5337234 TAATATTATCAATTAATACATATGGATATAAAATCTTACTATATTCTTATGTCATATCAATTGTT
709 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* * ** * *
5337299 ATAAATATATCCATTGACGTCCTCCCTAACCAATTGAAATTGTGTAGTATTAGTGATAGTTGCAT
774 ATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
5337364 CTAAGTTTTGTGCTACAAAAG
838 CTAAGTTTTGTGCTACAAAAG
* *
5337385 GTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCAGATGTCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5337450 GGGTATTACAGAGCACAACATACCAACCCTCATCTATTGAATTGTGACAGTAAAAAAA-TTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * *
5337514 CACTTAAGAAAAAAATAGATATGACTCATTTATCAATCGTTGACCAGTGTGAA-TAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * * *
5337578 AATT---CATCGTAAAACCGAA-TTATCGCTTTTGATGCCTCGCGTAGTGTTTACATCATCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* *
5337639 TCACACCGAAACAGCACAA-TCTTTCGTTTTCCGTAATAATTTAACTTAATAATGTCTGTAAGAA
261 TCACACCGAAACA-CACAACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAA
* * * * * *
5337703 TTCCATAATAATATATAACTCCCTTCAAATGGTGATTTTCCCTGGAACTAGCATAACTTGTAGTT
324 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTT
* * *
5337768 GAAGAAGTAACTACTACTCCATAATTTTGGTGTCCTCCTTAATCTTTCACGAGATTTCATTTTGA
389 GAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTC-GTTTGA
*
5337833 ACCTGAACCCATTAATGAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGT
453 ACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
*
5337898 CATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACAGATGAATGGTGAATTAATT
516 CATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
*
5337963 TGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAACAAAGC
581 TGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAA-AAAAC
* **
5338028 AACAATTTTAGTAGGAAAATGGTTTAATTAATGAATATATTGAATGACATTATGTTATAAGTTAT
645 AACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTAT
* * * *
5338093 AATATTATAAATTAATACATATGGATATAAAATCTTACAACATTCTTATGCCATATCAATTATTA
710 AATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCA
* * * * **
5338158 TAAATATATTCATTAACGTCCTCCCGAACCAATTGAAATTGTGTAGTATTAGTGATAGATGGATC
775 TAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATC
5338223 TAAGTTTTGTGCTACAAAAG
839 TAAGTTTTGTGCTACAAAAG
*
5338243 GTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTC--T--A-------
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * *
5338297 GGGTATTATAGAGCACAACATACCAACCCTCATCTATTGAATTATGACAGTAAAAAAA-TTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* *
5338361 CACTTAAGAAGAAAATACATATGCCTCATTCATCAATCGTTGACCAGTGCGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * *
5338426 AATTCACCTTTGTAAAACCGAATTTAT-TGCTCTTTATGCCTCGCGTAGTGTTTTCATCAGCCCA
196 AATTCACCATTGTAAAACCGAATTTATCT-CTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * * *
5338490 GTCACACCGAAACA-ACATAATCTTTCGTTTTCCGTAATAATTTAACTTAATAATATCTGTAAGA
260 GTCACACCGAAACACACA-ACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* * * **
5338554 ATTCCATAATAATATATATCTCCCTCCAAATGATGATTTTCCCTCAAACTAGCATAACTTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
* * *
5338619 TGAAGAAGTAACTACTACTCCATAATTTTTGTGTCCTCCTTAACCTTTCACGAGATTTCATTTGA
388 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTGA
* *
5338684 ACCTGAACCCATTAATAAGAAAGG-TATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGTCA
453 ACCTGAACCCATTAATGAGAAAGGTTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCA
*
5338748 TTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACAGATGAATGGTGAATTAATTTG
518 TTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTG
5338813 CATTGATGTCGATACCACAAATCACTTA-TTTTCTCCTGGCATGATATCTGAAATAAAAAAGCAA
583 CATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAA-CAA
* *
5338877 CAATTTTAGTAGGAAAATGGTTTAATTAATGAATATATTGAATGACAATATGTTATAAGTTATAA
647 CAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAA
*
5338942 TGTTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATA
712 TATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATA
* *
5339007 AATATCTTCATCAACGTCC-CCCAACCCATTAAAATTGTGTAGTGTTAGTGATAGTTTCATCTAA
777 AATATCTTCATCAACGTCCTCCCAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAA
* *
5339071 GTTTTGTGTTAAAAAAG
842 GTTTTGTGCTACAAAAG
* * *
5339088 GTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACATCCATCCCCGATGTCTATCAAGTCTATG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
*
5339153 GGGTATTATAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * * *
5339218 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCATTAACCAATGTGAATTAATCGATAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* *
5339283 AATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAATAGTGTTTACATCAGCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * * *
5339348 TCACACTGAAACAGTACAACTTTTTGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAAT
261 TCACACCGAAACA-CACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAAT
* * * *
5339413 TACATAATAATCTACATCTCCGTCCAAATGATGATTATCCCTGGAACTAGCATAACTTATAGTTG
325 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTG
* * * * * *
5339478 AAGAAGTAACTACTACACCATAA-TTTTGTGTCC-CGCTTAATCTTTCTCAAGATTTTGTGTGGA
390 AAGAAGTAACTACTACTCCACAATTTTTGTGTCCTC-CTTAATCTTTCACGAGATTTCGT-TTGA
* *
5339541 ACCTAAAACCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
453 ACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
*
5339606 CATTTAAGATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
516 CATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
5339671 TGCATTGATGTCAACATGTTATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATA
581 TGCATTGATGT---C--G--ATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATA
*
5339736 AAAAAGCAACAATTTTAGGAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTAT
639 AAAAA-CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTAT
* ** *
5339801 AAGTTATAATATTATAAATTAACACATATGGATATAAAATCACACCACATTCTTATGTCATATCA
703 AAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCA
* * * *
5339866 ATTGTCATAAATATCTTGATCAACATCCTCCTGAACCCATTGAAATTTTGTAGTATTAGTGATAG
768 ATTGTCATAAATATCTTCATCAACGTCCTCC-CAACCCATTGAAATTGTGTAGTATTAGTGATAG
* *
5339931 TTTCATCTTAGTTTTGTGCTACAAAAT
832 TTTCATCTAAGTTTTGTGCTACAAAAG
* *
5339958 GTAAAGATTCAGATATTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
** *
5340023 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAATGAGAGTAAAAAAAACTTGTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGT-AAAAAAACTTGTT
* *
5340088 TCACTTAAGAATAAAATACATATGACTCATTCATCAATCGTTGACCAGTATGAATTAATCGAGAG
130 TCACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
*
5340153 AAATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAG-CCA
195 AAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * *
5340217 TTTACACCGAAACAACACAAAC--TTCATTTAT-CGTAATAA--TAACTTAATAATGTCCGTAAG
260 GTCACACCGAAAC-ACAC-AACTTTTCGTTT-TCCGTAATAATCTAACTTAATAATGTCCGTAAG
* * * *
5340277 AATT-CATAATAATATACATCTCCCTCTAAATGATGATTGTCCTTGGAACTAACAT-ACTTGTAG
322 AATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAG
* * *
5340340 TTCAAGAAGTAACTACTACTCTACAAATTTTT-TATCCTCCTTAATCTTTCACGAG-TTTCGTGT
387 TTGAAGAAGTAACTACTACTCCAC-AATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGT-T
* * * *
5340403 GGAACCTAAACACATTAATGAGAAAGGAT-TATCTTTTAACAA---T-TTTGGACCTTGAGAAAG
450 TGAACCTGAACCCATTAATGAGAAAGGTTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
** * * *
5340463 GAATTT-ACATTTTCACTAAC-TCTCTTCCACTCCAAACCTATTACACACGAATGGTGAAATAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
* * * * * * *
5340526 CTT-TATTTATGTTGATATCGCAAATCACTTATTGTACTCCTGGGCATGATATCT-ATAATAAAA
580 -TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGATATCTGA-AATAAAA
* * * *
5340589 AACAATAATTTTAATAAGAAAACGGTTTAATTAATGAATATATTGAATGATAACATGTTATAAGT
642 AACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGT
* *
5340654 TATAATACTT-TAAATTAATACATGTGGATATAAAATC-T--TGC--TCTTATGTCATATCAATT
707 TATAATA-TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATT
* * * *
5340713 GTCATAAATATC-T--TCAACGTCATCCCGAACCCTTTGAAATTTTGAAGTATTAGTGATAGTTT
771 GTCATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTT
5340775 CATCTAAG-TTTGTGCTACAAATA-
835 CATCTAAGTTTTGTGCTACAAA-AG
* * * * *
5340798 -TAAAGATTCAGATCTTGTTTCAACGTCATCTTTACTTCCATCCCCGATGTCTACCAAGTATCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5340862 GGGTATTACAGAGCACAACATACCAA-CCTCATCCATTGGAATGTGATAGT-AAAAAACTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * *
5340925 CACTTAAGAAGAAAATACATATGA--C-GTCATCAATCGTTGACCAGTGTGAATTAATCAAGAGT
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * *
5340987 AATTCACCATTTTAAAACC-----TATCTCTTTTTATACCTCGAGTAGTGCTTACATCAGCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* *
5341047 TCACACCGAAACAACACAACCTTTCG-TTTCCTTAATAATCTAACTTAATAATGTCCGTAAGAAT
261 TCACACCGAAAC-ACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAAT
* *
5341111 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCC-GGAACTAGCCTAACTTGTAATTG
325 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTG
* * *
5341175 AAGAAG-AACTATTACTCCACAA-TTTTGTGTCCTCCTTAATCTTTCACTAGATTTCGTGTGGAA
390 AAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGT-TTGAA
* * * *
5341238 CCTGAACCCATAAATGAAAAAGGCATATATCTTTTAACAATTCTA-TTGGACCTTGTGAAAGCCA
454 CCTGAACCCATTAATGAGAAAGG-TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCA
* *
5341302 TTT-ACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACATGAATGGTGAA-T-A-TTG
518 TTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTG
*
5341363 CATTGATGTCGATACCGCAAATCAC---TTTTTCTCCTGGCATGATAT-TGAAATAAAAAA-AAC
583 CATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAACAAC
**
5341423 AATTTTAGTAAGAAAACAGTTTAATTAATG-A-ATA-TGAATGACAACATGTTATAAGTTAT-AT
648 AATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAAT
5341484 A-TATAAATTAATAC--ATGGATATAAAATCTTACTACATTCTTATGTCATATCAA-TGTCATAA
713 ATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAA
* * * *
5341545 ATA-ATTCATCAACATCCTCCCGAACCCATTGAAA-T-TGTA--ATTTGTGATATTTTCATCTAA
778 ATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAA
* **
5341605 CTTTTGTGCTAC-AATT
842 GTTTTGTGCTACAAAAG
* * * * * * *
5341621 GTAAAGATTAAGATCTTGTTT-ATTGTCGTCTATACTTCCATCCCCGATATCTATCAAG-GT-TA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * * *
5341683 AGGTATTACTGAGCAC-ACATACCAA-CCTTATCCATTGGATTGTGATAGTAAAAAAAC-T-TAT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * * * * * * *
5341744 AAATTAATCGAGAGAAATTCACCATTATAAAACTGAATTAAT--ATCTTTTCATCCCTCGAGTAG
131 CACTTAA--GA-AGAAAAT-A-CA-TAT--GACT-CATTCATCAATC-GTTGA---C-C-AGT-G
* * * * * * * * * * *
5341807 TGTTACATCAACCCTGTTACACCGAAACAATGCAACCTCATTCCATAAACATCTAACTAATAATG
180 TG--A-ATTAA-TC-G----A--GAGA-AATTC-A-C-CATT--GTAAA-ACCGAATTTAT-CTC
**** * ** * ** * ** * * * * *
5341872 TCCGAAAGAATTCCA-TA-AATCTACATCTTCCAAATAATGATTTTCTCTGAAACTAGCATAACT
226 TTTTTATG-CCTCGAGTAGTGTTTACATCAGCCCAGTCA-CA----C-C-GAAAC-A-CACAACT
* * **** * * * ** * * * *** *
5341935 TGTAGTTGAAGAAGAAACTACTACTCCACAATTTTTTAGTCCTCCTTAATCTTTCACGGGAT-TT
281 TTTCGTT--TTCCGTAA-TA--A-T-C-TAACTTAATAAT-GTCCGTAAGAATTC-C---ATAAT
** * * * ** * * * ** * * * *
5341999 CGTGTGAAACCTAAAC-CCATTAATGAGAAGACATATAT-CTTTTAAC-A-AAT-TCTATTTGGC
333 AATCT-ACATCT-CCCTCCA--AAT--GATG--AT-TGTCCCTGGAACTAGCATAACT-TGTAG-
* ** * * * * * * * *
5342059 CTTG-AGAAAGGCATTTAAC-ATCTTCACTAACTTCTCT-TCCACTCC-AAACCTATACATGAAT
387 -TTGAAG-AA-GTAACT-ACTA-CTCCAC-AATTTTTGTGT-C-CTCCTTAATCT-TTCACG-A-
** * **** *
5342120 GGTGAATTAATTTGCATTGATGTTGATA-CTGCAAATCACTTATTG-TCTGGGCATGATATCTTT
441 ---G-----ATTT-C---G-T-TTGA-ACCTG-AACCCA-TTAATGAGAAAGG--TTATATCTTT
* * ** * * * * ** * * ** * * * *
5342183 AAAAAAAACAAAAATTT--A--GTAAGAAA-ACGGTT-A-A--TTAACGAAAAT-AC-T-GAATG
487 TAACAATTC---TATTTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTC
* * * * * ** * * * *
5342236 AAAACATGTTATA-AGTTATAATTTTAAATTAA--TACA-T-ATG--GTTA-TA-AAATCTACTA
549 CAAACCTATTACACA--T-GAATGGTGAATTAATTTGCATTGATGTCGATACCACAAATC-ACT-
* * * * **** * * * *
5342292 CATTCTATCTCAT--CA--ATGTCAT-AAAT-ATCTTCATCAATGTCTTCCCGAACCATTGAAAT
609 TATT-TTTCTCCTGGCATGATATC-TGAAATAAAAAACAACAAT-T-TT--AGTA--A--GAAAA
* * ** * *
5342351 TGGTAGT-ATTAGTG-ATAT-TTTCAT--CTA-A-GTT-T--GTGTACAA-ATGGTA-AAGATTA
664 TGGT-TTAATTAATGAATATATTGAATGACAACATGTTATAAGT-TATAATAT--TATAA-ATTA
* * ** *** * * * ** * * * **
5342404 GAT-CTTGTTCAT-TGTCATCCCTACTTCCA-CCCGATG-CCTATCAAGTCTC-TGGGGATAT-T
724 -ATACATATGGATATAAAAT-CTTAC-TACATTCTTATGTCATATCAATTGTCAT--AAATATCT
* * * * ** * * * *** *
5342463 ACAGAGCACAACATACCAACCTC-TTCCTTTG-GATTGTG-ACCGTA-AAAAAACTTGTTTCATT
784 TC--A--TCAACGT-CC-TCC-CAACCCATTGAAATTGTGTA--GTATTAGTGA-TAGTTTCA-T
* ** * * **
5342524 ATGAAGAAAATACATATGAC-CCATTCA-
838 CT-AAG----T-TTTGTG-CTACA-AAAG
* * * * ** * * * ** ** *** *
5342551 TTAATCG-TTCACCAGT-GTGAATTAATCGAGA-GAAATTCACCATTTTAAAACTTAATTTCTCT
1 GTAA-AGATTCA-GA-TCTTG--TT--TC-A-ATGTCA-TCTCTACTTCCATCCCCGA--TGTCT
* ** * * * * * * * * * * *
5342613 TTTTA-TAC-CTCGAGTATGTTTACATCAGCCCAATAACACCGAAACATCAAAACCTTTCG-TT-
54 ATCAAGT-CTCTGGGGTA---TTACA-GAGCACAA-CATACC-AACCCTC--ATCCATTGGATTG
* ** * ** * ** * * * *
5342674 T-TCCTTAATAATCTAACTT-AAT-AATGTCTGAA-AGAATTCCATAAT-AATCATCTCCTCCAA
110 TGACAGTAA-AA--AAACTTGTTTCACT-TAAGAAGA-AAATACAT-ATGACTCAT-TCAT-C-A
* * ** * * ** * ** *
5342734 AT-GATGATTTTCTCTG-GAACTAGCATAACTTGTAGTGAAGA-AGA-CACT-T-ACTCCACAAT
166 ATCGTTGA---CCAGTGTGAA-T----TAA-TCG-AGAGAA-ATTCACCATTGTAAAACC-GAA-
* * * * * * * ** * * * * *
5342793 TTTTTGTCTCCTTAAT-CTTCACGGGATTTCGTGTGAAACCTAAACCCA-T-A-A-TGAGAA-AG
218 TTTATCTCT-TTTTATGC--CTC--GA-GTAGTGT-TTACATCAGCCCAGTCACACCGA-AACAC
* ** * * * * * * * * ** * *
5342852 AC-ATTATTTC-TTTAAC--AATTCTATTTGGACCTGAGAAAGGCATTTAA-CATCTTCACTAAC
275 ACAACT-TTTCGTTTTCCGTAA-T-AATCT-AACTTAATAATGTC-CGTAAGAAT-TCCA-TAA-
* * * * * * *
5342912 T--TCT-C-T-TCCACTCCAAA--CT-ATT-ACACAT-GAA-T-G-GTGAA-TT-AATTTGCATG
332 TAATCTACATCTCC-CTCCAAATGATGATTGTC-CCTGGAACTAGCAT-AACTTGTAGTTG-AAG
* * * * * * * * * * *
5342962 ATGTGATACTGCAAAT-CAC---TTATGTTCTCCTGGGCATGATATCTTTAAAAAAACAAAATTT
393 AAGT-A-ACTACTACTCCACAATTTTTG-TGTCCT---CCTTA-ATCTTT-----CACGAGA-TT
* ** * * ** * **
5343023 TAGTAAGAAAACGGTTTAATTAACGAAATACTGAATGA-AACATGTTATAAGTTAATACATATGA
445 TCGTTTG--AAC------CTGAAC-CCAT--T-AATGAGAA-AGGTTATATCTT--T---TA--A
* * * ** ** * * * *
5343087 CCCATTCATTAATCATT-CACCAGTGTGAATTAATCGAGAGAAATAGCCAT-TTTA-AAACTTAA
490 -CAATTC--T-AT--TTGGACC--T-TG-A-GAA---AGCCATTTA-ACATCTTCACTAACTT-C
* * * * * * * ** * ** * * *** *
5343149 T-TT---GT-C--TCTTTTTATACCTCGAGTATTG-TTTACATCAGCCCAGTAACACCGA-AACA
539 TCTTCCACTCCAAACCTATTACACAT-GAATGGTGAATTA-ATTTG--CATTGATGTCGATACCA
* * ** * * * *** * * **
5343205 GCAAA--ACCTATCGTTT-T-CTGTAATAATTTAACT-TAATAATGTCTATAAGAATTCCA-TAA
600 -CAAATCACTTAT-TTTTCTCCTGGCATGA--TATCTGAAATAA--AAAACAACAATTTTAGTAA
* * * * * * * * * * * *
5343264 TAATCTATAT-CTCCCTCCAAATGATGATTTTCCCTGGAACTAGCATAACCTG-TAGTTGAAG-A
659 GAA---A-ATGGT---T-TAATTAATGAATAT--ATTGAA-T-G-ACAACATGTTA--T-AAGTT
* * * *** * ** * * * * * * *
5343326 AGTAACTACTACACCA-TAATTTTTGTGTCCTCCT-TAATCTTTCACGAGATTCATTTTGAACCT
708 A-TAA-TATTATA-AATTAATACATATG-GAT-ATAAAATC-TT-ACTACATTC-TTATG-TCAT
* * * * * ** * * ** ** * * * ** * *
5343389 GAACCATTAATGAGAAAGGTATT-AT-ATC-TTTTAACAATTCTATGGACCTTGAGAAAGTTATT
764 -ATCAATT-GTCATAAATATCTTCATCAACGTCCTCCCAA-CCCATTGAAATTGTG-TAG-TATT
* * * * * * *
5343451 --TAACA-TCTTCA-CTAACTTCTTCTACT-CCAAAC
824 AGTGATAGT-TTCATCTAAGTT-TTGTGCTACAAAAG
* * ** * * ** ** ** *
5343483 CTATTAAGA-TGA-ATGGTGAATT-AAT-TGCAT-T-GA-TGTTGATACCACAAATCACTTAT-T
1 GTA--AAGATTCAGATCTTG-TTTCAATGT-CATCTCTACT-TCCAT-CC-CCGATGTC-TATCA
** * * * ** ** * ** *
5343540 TTTCTCCTGGCATGATATCTGAAATAAAACAACA-A-CAA-TTTTAGTAGGAAAATGGTTTAATT
58 AGTCT-CTGG---GGTAT-T-ACAGAGCACAACATACCAACCCTCA-T---CCATTGG----ATT
* * * * *
5343602 AATGA-A-TATATTGAATGACAA-TATGTTATGAGTTATAATATTATAAATTAATACATATGGAT
109 -GTGACAGTA-A---AA--A-AACT-TGTT-TCA-CT-TAAGA--A-GAA--AATACATAT-GA-
* * * * * * * * ** ** * * * ** ** ****
5343664 ATAAAATCTTACTACATTCTTATG-TCA-TATCAATTGTTATAAATATATTCATTAACGTCCCCC
155 CT--CAT-TCA-T-CAATCGT-TGACCAGTGTGAATTAATCGAGAGAAATTCACCATTGTAAAAC
*** **** * ** * * **** * **
5343727 CGAACCAAT-TGAAATTGTG--TAATATTAGTGATAGTTGCATCTAAGTTTTTTGCTACAAAATG
214 CGAATTTATCTCTTTTTATGCCT-CGAGTAGTG-T--TTACATC--AG--CCCAG-T-CACACCG
* ** * ** * * * * ** *
5343789 TAAAGATTCAGA-TCTT-GTTTT-AAT-GTCATCTATACTTCCATCCCCGATGT-C-TATCAAGT
269 -AAACACACA-ACTTTTCGTTTTCCGTAATAATCTA-ACTT-AAT----AATGTCCGTAAGAATT
** ** * ** * * * * *** * *
5343848 CTTTGGGGTATTACTGAGCA-CAACATACTAACATCATCCATTG-GATTGTG-ACGTA-AAAAAC
326 CCAT--AATAAT-CT-A-CATCTCCCT-CCAA-ATGAT-GATTGTCCCTG-GAAC-TAGCATAAC
* * * * * ** ** * * ** **
5343909 TGTTTCACTTG-AGAA-AAAATACTA-T-GACTAA---TT-CATCAACCGTTGACCAGT-GTGA-
381 T-TGT-AGTTGAAGAAGTAACTACTACTCCAC-AATTTTTGTGTCCTCC-TTAATCTTTCACGAG
*** * ** * * * * ****
5343964 ATTAATCGAGAGAA-ATTCA-CCATT-GT-A-AAATTGAATTTATCTCTTTTTATGCCTCGAGTA
442 ATT--TCGTTTGAACCTGAACCCATTAATGAGAAA--G--GTTATATCTTTTAACAATTC---TA
* * * ** *** ** * * * * *
5344024 GTGTT-TA-CATCAGTCTAGTCACACCGAA-AT-AGCAC-AACCTTTGGTTTTTCA-T-AATAAT
498 -T-TTGGACCTTGAG-AAAG-C-CATTTAACATCTTCACTAA-C-TT-CTCTTCCACTCCA-AAC
* * * * * * * * *
5344082 CTA--ACTTA-AT-AATGTCTGTAA-GAA-TTACATAATAATCTAC-ATCTCCTCAAATGA-TGA
554 CTATTAC--ACATGAATG-GTG-AATTAATTTGCAT--TGATGT-CGAT-ACCACAAATCACTTA
* * * * * * *
5344139 -TTGTC-CCTGGAACTAGCATAACTGTAGTTGAAGAAGTAACTACTACACCATAATTTTGTGTTC
611 TTTTTCTCCTGGCA-T-G-ATATCTG-A----AATAA--AA--A--ACA--ACAATTTT-AG-TA
* * * *
5344202 TGCTTAATCTTTCTCAGATTTGTGTAACCGAAACATTATGAGAAAGGCATTAATTAACAATATTG
658 AG---AA--------A-A--TG-GT---------TT--------A---ATTAATGAA-TATATTG
* * * * *
5344267 ACCTGAGAACAT-TTA-AA-TTATAATCCTTATAAATT-ACACATATGG-TATAAAATC--ACCA
687 A-ATGACAACATGTTATAAGTTATAAT-ATTATAAATTAATACATATGGATATAAAATCTTACTA
* *
5344325 CA--CTTAT-TCATA-CAATTGT-ATAAAAAGAAACTT-AT-AA-GTCCTCCCGAACCCATTGAA
750 CATTCTTATGTCATATCAATTGTCAT--AAA-TATCTTCATCAACGTCCTCCC-AACCCATTGAA
* * *
5344382 ATT-T-T-GTAGTAGTGATAGTTTCATCTTAGTTTTGTGCTACAAAAT
811 ATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTACAAAAG
*
5344427 GTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
** *
5344492 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAATGAGAGTAAAAAAACTTG-TT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5344556 CACTTAAGAAG-AAA-A-ATATGA--CA-T--TCAATCGTTGACCAGTATGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* *
5344613 AATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAT
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * * *
5344678 TTACACCGAAACAACACAAAC-TTTCATTTTTCGTAATAATCTAACTTAATAATGTTCGTAAGAA
261 TCACACCGAAAC-ACAC-AACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAA
* *
5344742 TTCCATAATAA--TACATCTCCCT-C------TGA-TGTCCTTGGAACTAACATAACTTGTAGTT
324 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTT
* *
5344797 CAAGAAGTAACTACTACTCCACAATTTTT-TGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGA
389 GAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGT-TTGA
* *
5344861 ACCTAAACCCATTAATGAGAAAGGATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGGC
453 ACCTGAACCCATTAATGAGAAAGG-TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCC
* * * * *
5344926 ATTTTACATGTTCA-TAAACTTCTCTTCCACTCCAAACCTATTACACACGATTGGTGAAATAATC
517 ATTTAACATCTTCACT-AACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT-
* * * * * * * *
5344990 TT-TATTTATGTTGATATCGCAAATCACTTATTGTACTCCTGGGCATGATATCTGTAATAAAAAA
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGATATCTGAAATAAAAAA
* * *
5345054 CAATAATTTTAATAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
*
5345119 TAATACTT-TAAATTAATACATGTGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGT
709 TAATA-TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGT
* * * *
5345183 CATAAATATCTTCATCAACGTCGTCCCAAACCCTTTGAAATTTTGAAGTATTAGTGATAGTTTCA
773 CATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCA
* *
5345248 TCTAAGTTTTATGCTACAAAAT
837 TCTAAGTTTTGTGCTACAAAAG
* * * *
5345270 ATAAAGATTCAGATCTTGTTTCAACGTCATCTTTACTTCCATCCCCGATGTCTATCAAGTCTCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5345335 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGAATGTGATAGT-AAAAAACTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* *
5345399 CACTTAAGAAGAAAATACATATGACACATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGT
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * * * * *
5345464 AATTCACCATTTTAAAACCTAATTTCTCTTTTTTTATACCTCGAGTAGTGCTTACATAAGCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * * *
5345529 TCACACCGAAACAAGACAACCTTTCATTTTCCTTAATAATCTAACTTAATAATGTCCGTAAGAAT
261 TCACACCGAAAC-ACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAAT
* *
5345594 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTAGAACTAGCCTAACTTGTAGTTG
325 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTG
* * * *
5345659 AAGAAGCAACTACTACTCCACAATTTTTGTGTACTACTTAATCTTTCACTAGATTTCGTTTGGAA
390 AAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTT-GAA
* * *
5345724 CCTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTAGACCTTGTGAAACCC
454 CCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCC
* * * *
5345789 ATTTTACATATTCATTAACTTCTCTTCCACTCCAAACCTATAACACATGAATGGTGAATTAA-TT
517 ATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTT
* * *
5345853 ---TTCATGTCGATACCGCAAATCACTTA--TTTCTCCTAGCATGATATCTGAAATAAAAAAACA
582 GCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAAT-AAAAAACA
*
5345913 ACAATTTTAGTAAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATA
646 ACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATA
*
5345978 ATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTTAT
711 ATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCAT
* *
5346043 AAATATATTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTTGTGATAGTTTCATCT
776 AAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCT
* * ***
5346108 AACTTTTATGCTACAATTT
840 AAGTTTTGTGCTACAAAAG
* * * * * * *
5346127 GTAAAGATTCAGATCTTGTTTTATTGTCGTCTATACTTCCATCCCCGATATCTATCAAGTGTCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * * *
5346192 AGGTATTACTGAGCACAACATACCAACCCTAATCCATTGGATTGTGATAGTAAAAAAAC-T-TAT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * * * * * * *
5346255 AAATTAATCGAGAGAAATTCACCAT-TGTAAAACTGAATTAAT--ATCTTTTCATGCCTCGAATA
131 CACTTAA--GA-AGAAAAT-A-CATATG----ACT-CATTCATCAATC--GT--TGAC-C-AGT-
* ***** * * * * *** **
5346317 GTG-TTTATATC-AGCCCTGTT-A-CACTGAAACAACGCAACATTTCATAT-TCCATAAACATCT
179 GTGAATTA-ATCGAGAGAAATTCACCATTGTAA-AAC-CGA-ATTT-ATCTCTTTTTATGC--CT
* * * ** * ** ** * * * * * * * * **
5346377 AACTTAATAATGTCCGAAAGAATTCCA-TAATAATCTACATCTCCCTCCAAATGAT-GATTTTCT
237 --C-GAGTAGTGT-TTACATCAGCCCAGTCA-CACCGA-A--ACAC-ACAACTTTTCG-TTTTC-
* * * * * * * * * * *
5346440 CTGGAACT-AGCATAACTT-GT-A-GT-TG-AAGAAGT-AACTACTACTCCACAATTTTTTTGTC
291 C-GTAA-TAATC-TAACTTAATAATGTCCGTAAGAATTCCA-TAATAATCTAC-A----TCT-CC
* * * * * * * * *
5346498 CTCC--TTAAT-CTT-TCACGGGATATCGTGTGAAACCTAAACCCAT-TA-ATG-AGAAAG-ACA
346 CTCCAAATGATGATTGTCCCTGGA-A-C---T--AGCAT-AA--CTTGTAGTTGAAG-AAGTA-A
* ** * * * *
5346555 TTA-TATCTTTTAACAAATTCTATT-TGGACCTTGAGAAAGGCATTTAA-CATCTTCACTA-ACT
399 CTACTA-C--TCCAC-AATT-T-TTGT-GTCC-T--------C-CTTAATC-T-TTCACGAGATT
** ** * * * * * *
5346616 TC-TCTTCCACTCCAAACCTATTACA-CATGAATGGTGA-AT-TAATTT-GC-ATT-GATGTT-G
445 TCGT-TTGAAC-CTGAACCCATTA-ATGA-GAAAGGTTATATCT--TTTAACAATTCTAT-TTGG
* * * * * * ** *** ** *
5346673 ATAC-TG-CAAATCACTTATTGT-TC-TCCTGGGCA-TGA-TATCT-TTAAAAAAACAAAAATTT
503 A-CCTTGAGAAAGC-C--ATT-TAACAT-CT--TCACTAACT-TCTCTT-CCACTCCAAACCTAT
* * * ***** * * * *** * *
5346731 TAGTA-A-GAAAACGGTTTAATTAACGAAAATACTGA-AT-GAAAACATGTTATAAGTTATAATA
558 TA-CACATG--AATGG-TGAATTAATTTGCAT--TGATGTCGATACCA-CAAATCACTTAT--T-
**** * * ** * * * * * * *
5346792 TTT-T--AAAAATAATAT-GGTTAT-AAAATCTAC-ATTCTTATCTCATATCAATTGTCATAAAT
613 TTTCTCCTGGCATGATATCTGAAATAAAAAACAACAATT-TTA-GTAAGA-AAATGGT--T---T
* * * * * *** * * * * * * *
5346851 ATCTTCATCAATGTCTT-CCCGA-ACCCAT-TGA-AATTGTGTAGTATTAGTGATATTTCAT-CT
670 A-ATTAATGAATATATTGAATGACA-ACATGTTATAAGT-TATAATATTA-T-A-AATTAATAC-
* * * ** * * * * ** * ***
5346911 AAGTTTTGTGCTA-CAAATGGTA-AAGATT-TAGATCTTGTTTC-ATTGTCATCCCTA-CTTCCA
728 -A--TATG-GATATAAAATCTTACTACATTCT-TATGTCATATCAATTGTCATAAATATCTT-CA
** ** * * * ** * ** * * * * * * *
5346971 TCCCCGATGCCTATCAAGTCTC-TGGGGATATTACAG-AGCACAACAT-ACCAATCCTCTTCCAT
787 TCAACG-T-CCTCCCAA--CCCAT--TGAAATT-GTGTAGTATTA-GTGA-TAGT-TTCATCTAA
** *
5347033 GGATTGTG--AC----C
842 GTTTTGTGCTACAAAAG
* * **** * * *
5347044 GTAAA-A---A-AACTTGTTTCATTATG-AAGAAAATACAT--ATGACCC-AT-TC-ATTAATCG
1 GTAAAGATTCAGATCTTGTTTCA--ATGTCA-TCTCTACTTCCAT-CCCCGATGTCTATCAA--G
* * * * * ** ** * * **
5347098 TTCACCAGTGTGTGAATTA-ATCGAG-AGAA-AT-TC-A-CCTTTTAAAACTT-AATTTTCTCTT
60 -TC-TC--TG-GGGTATTACA--GAGCACAACATACCAACCCTCAT-CCA-TTGGATTGTGAC--
** **** * * * ** * * **
5347156 TTTATACTCGAGTATGTTT-ACATT-AGCCCAATAACACCGAAACATCAAAAC-CTTTCGT-TTT
114 AGTA-AAAAAACT-TGTTTCAC-TTAAG---AAGAA-A---ATACAT-ATGACTCATTCATCAAT
* ** * * * ** * ** *
5347217 CCTT-AATAATCT-AACTTAATAATGTCCGAAAG-AATTCCATAATAATCTACATCTCCCTCCAA
168 CGTTGACCAGTGTGAA--T--TAA--T-CGAGAGAAATT-CACCAT--TGTA-A---AAC-CGAA
* * * * * * * * * ** * * * ** **
5347279 ATGATGAT-TTTCTCTGGAACTAGCA-TAAT-TGTAGTTGAAG--AAGTAACACTTACTC-CACA
218 TTTAT-CTCTTTTTAT-G-CCTCG-AGTAGTGTTTACAT-CAGCCCAGTCACACCGAAACACACA
** * **** ** * * **
5347338 A-TTTT--TTTGTCC-TCCTAATCTTTCACGGGTTCGTGT--GAAACCTAAACCCATTAATGAGA
278 ACTTTTCGTTT-TCCGTAATAATC--TAACTTAATAATGTCCGTAA--GAATTCCA-TAAT-A-A
*** * ** ** ** * * *
5347397 AAGACATTATTTCTTTTAACAATTCTGTTTGGACCTTGAGAA--AGGCATTTAACATCT-TCACA
335 TCTAC---ATCTCCCTCCA-AATGATGATT-GTCCCTG-GAACTA-GCA--TAAC-T-TGT---A
* * * * * *** * *
5347459 GTGTGAATTAATCGAGAGAAATTCACCAATTCCATAATAACTCTACATCTCCCTCCAAATGATGA
386 GT-TG----AA--GA-AGTAACT-A-CTACTCCACAAT---T-TTTGTGT-CCTCC---T--TAA
* *** * * * * *** * *
5347524 T-TTCTCTGGAACTAGCATAACTT-GTATTGAAGAAGTAACAC-TTACTCCACAATTTTTTTGTC
431 TCTT-TC----ACGAG-AT---TTCGT-TTGAACCTG-AACCCATTAAT-GAGAAAGGTTATAT-
* * ** * * * * * ** *
5347586 CTCCTTAATC-TTTC-A-CGGGATTTCGTGTGAAA-CC--TAAACCAT-TAATGAGAAGACATTA
483 CT-TTTAA-CAATTCTATTTGGA--CCTTGAGAAAGCCATTTAA-CATCT--TCACTA-AC-TTC
** * ** * * * * * * * **
5347644 T-TTTTA--ACAATTCTGTTTGGAC-CTTGAGAAAGG-CATTTAACATCTT-CACTAACT-TCTC
539 TCTTCCACTCCAAACCT-ATT--ACACAT--GAATGGTGAATT-A-AT-TTGCATTGA-TGTCGA
* ** ** * * * * * **** *** *
5347702 TTCCAC---TC-CAAACCTAT-TAC--ACATGA-ATGGTGAATTAATTTGCATTGATGTT-GATA
595 TACCACAAATCACTTATTTTTCTCCTGGCATGATAT-CTGAAATAAAAAACAACAATTTTAG-TA
* ** * * * * ** * *
5347758 CTGCAAATCACTTATTGTACTCCTGGGCATGATATCTATAATAAAAAACAATAATTTTAATAAG-
658 -AG-AAA--A-TGGTT-TAAT--T---AATGA-A--TATATTGAATGACAA-CATGTT-ATAAGT
* ** * * * * *
5347822 -AAAACGGTT-T-AATTAGCGA-ATATATTGA-ATGACAACATGTTA-TA-AGTTATAATACTTT
707 TATAA-TATTATAAATTA---ATACATATGGATAT-A-AA-ATCTTACTACA-TTCT--TA-TGT
* *
5347880 AAATTAAT-ACATGTGGATATAAAATCTTGCTACATTCTTATGTCATATCAATTGTCATAAATAT
761 -CA-T-ATCA-AT-T-G---T--CA--T-------------------------------AAATAT
* * * *
5347944 CTTCATCAACGTCATCCCGAACCCTTTGAAATTTTGAAGTATTAGTGATAGTTTCATCTAAGTTT
782 CTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTT
*
5348009 TGTGCTACAAAAT
846 TGTGCTACAAAAG
* * * * * *
5348022 ATAAAGATTCAGATCTTGTTTCAACGTCATCTTTACTTCCATCCCCGATGTCTACCAAGTATCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5348087 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGAATGTGATAGT-AAAAAACTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * *
5348151 CACTTAAGAAGAAAATACATATGACGCATTCATCAATCGTTGACCAGTGTGAATTAATCAAGAGT
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * *
5348216 AATTCACCATTTTAAAACCTAATTTATCTCTTTTTATACCTCGAGTAGTGCTTACATCAGCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* *
5348281 TCACACCGAAACAACACAACCTTTCGTTTTCCTTAATAATCTAACTTAATAATGTCCGTAAGAAT
261 TCACACCGAAAC-ACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAAT
* *
5348346 TCCATAATAGTCTACATCTCCCTCCAAATGATGAGTGTCCCTGGAACTAGCATAACTTGTAGTTG
325 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTG
* * ** *
5348411 AAGAAGTAACTAGTACTCCAAAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTAAGTGTGAAA
390 AAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTG-AA
*
5348476 CGTGAACCCATTAATGAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCC
454 CCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCC
*
5348541 ATTTAACATCTTCACCAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTT
517 ATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTT
* * * *
5348606 GCATT-ATTCTCGATATCACATATCATTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAAAC
582 GCATTGA-TGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAAT-AAAAAAC
***
5348670 AACAATTTTAGTAAGAAAACAATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTAT
645 AACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTAT
* * *
5348735 AATATTATAAATTAATACATATGGATGTAAAATCTTACTACTTTCTTATGTCATATCAATTGTTA
710 AATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCA
* * ** *
5348800 TAAATATCTTCATCAACATCCTCTCGAACGAATTGAAATTGTGTAGTACTAGTGATAGTTTCATC
775 TAAATATCTTCATCAACGTCCTC-CCAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATC
* *
5348865 TATGTTTTGTGCTATAAAAG
839 TAAGTTTTGTGCTACAAAAG
*
5348885 GTAAAGATTCAGATC-TGTTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCACT
1 GTAAAGATTCAGATCTTG-TTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCT
* * *
5348949 GTGGGTATTCCAAAGCACAACATACCAACTCTCATCCATTGGATTGTGACAGTAAAAAAACTTGT
65 G-GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGT
* * *
5349014 TTCACTTAAGAAGAAAATCCATAAT-ACTCATT-AGTCAATCGTTGACTAGTGTGAATTAATTGA
129 TTCACTTAAGAAGAAAATACAT-ATGACTCATTCA-TCAATCGTTGACCAGTGTGAATTAATCGA
* * * *
5349077 GAGAAATTCACCATTGTAAAACCGAATTTATCCCTTTTTATGCCTCGAGTATTGTTTACATAAGT
192 GAGAAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGC
* * * * * * *
5349142 CCAGTCACACTGAAATAGTATAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCGTAA
257 CCAGTCACACCGAAACA-CACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAA
* * *
5349207 GAATTCCTTAATAATCTACA-CTTCCCTCCAAATGATGATTGTCCCTAGAAATAGCATAACTTGT
321 GAATTCCATAATAATCTACATC-TCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGT
* *
5349271 AGTTGAAGAAGTAACTACTACTCCACAATTTTT-TGTCCTCCTTAATCTTTCACGAGATTTTGTG
385 AGTTGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTT
* *
5349335 TGCAACTTGAACCCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGAACCTTGAGA
450 TG-AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGA
* * **
5349400 AAGACATTTAAGATCTTCACTAACTTCTC-T--A--CC--ACC-----C-CA--AA-CCT--ATT
512 AAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATT
* * ** *
5349447 AATTTGCATTGATTTCGATACCGCAAATGTCTTATTTTTCTCCTAGGCATGATAAT-TGTAATAA
577 AATTTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGAT-ATCTGAAATAA
* * * *
5349511 AAAACAACAACTTTAGTAAGAAAATGGTTTAATTAATTAATATATTGAATGACAACAAGTTTTAA
640 AAAACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAA
* * *
5349576 GTTATAATATTATAAATTAATATATATGGATATAAAATCTTACTACATTCTTATGTCTTATAAAT
705 GTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAAT
* *
5349641 TGTCATAAATATC-TCATCAACGTCCTCCCGAATCCATTGAAATTGTGTAATATTAGTGATAGTT
770 TGTCATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTT
*
5349705 TCATCTAAGTTTTTTGCTACAAAAG
834 TCATCTAAGTTTTGTGCTACAAAAG
* *
5349730 ATAAAGATTCAAATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * *
5349795 GGGTATTACAGAGCACAACAAACCAACCCTCATCCATTGGATTATGATAGT-AAAAAA-TTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5349858 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGCTGACCAGTGTGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * *
5349923 AATTCACCTTTGTAAAACCGAATTTATCACTTTTTATGCCTCGCGGAGTGTTTACATCAGCCCAG
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * * *
5349988 TCACACCGAAACAACACAA-TCTTTCGTTTTCTGTAATAATTTAACTTAATAATGTCTGTGAGAA
261 TCACACCGAAAC-ACACAACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAA
* * *
5350052 TTCCATAATAATCTATATCTCCCTCCAAATGATGATTTTCCCTGGAACTAGCATAACCTGTAGTT
324 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTT
*
5350117 GAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTTGTTATGA
389 GAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTT-TGA
* * *
5350182 ACCTGAACCCATTAATGGGAAAGGTATTATATCTTTTAACAATTCTATATGGACCTTCAGAAAGC
453 ACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
* * *
5350247 CATTTAACATCTTCACTAGA-TTTTCTTCAACTCCAAACCTATTACACATGAATGGTGAATAAAT
516 CATTTAACATCTTCACTA-ACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
*
5350311 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTAGCATGATATCTGAAATAAAAAAG
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAA-
* * * *
5350376 CAACAATTTTAGTAGGAAAATGGTTTAATTAATAAATATATTGAATGACAATATGTTATGAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
* *
5350441 TAATATTATAAATTAATACATATGGATATAAAATCTTACTATATTCTTATGTCATATCAATTGTT
709 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* * * * *
5350506 ATAAATATATTCATTAACGTCCTCCCGAACCAATTGAGATTGTGTAGTATTAGTGATAGTTGCAT
774 ATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
5350571 CTAAGTTTTGTGCTACAAAAG
838 CTAAGTTTTGTGCTACAAAAG
* * **
5350592 GTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCTATCCCATATGTCTATCAAGTCTCTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
** *
5350657 GGGTATTACAGAGCACAACATACCAACCCTCATATATTGAATTGTGACAGTAAAAAAA-TTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
* * *
5350721 CACTTAAGAAAAAAATAGATATGACTCATTTATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * * *
5350786 AATTCATCTTTGTAAAACCGAATTTATCGCTTTTTATGCCTCGCA-TAGTGTTTACATCATCCCA
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCG-AGTAGTGTTTACATCAGCCCA
* *
5350850 GTCACACCGAAACAGCACAA-TCTTTCGTTTTCCGTAATAATTTAACTTAATAATGTCTGTAAGA
260 GTCACACCGAAACA-CACAACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* * * * *
5350914 ATTCCATAATAATATATATCTCCCTCCAAATGGTGATTTTCCCTGGAACTAGCATAACCTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
* * * *
5350979 TGAAGAAGTAACTACTACTCCATAATTTTGGTGTCCTCCTTAATCTTTCAGGAGATTTCATTTTG
388 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTC-GTTTG
** *
5351044 AACCTGAGTCGATTAATGAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
452 AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
* * * *
5351109 TCATTTAACATCTTCACTAACTTCTATTCAACTCCAAACCTATTACAGATGAATGGTGAATTAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
*
5351174 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAACAAAG
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAA-AAAA
* * ** *
5351239 GAACAATTTTAGTAGGAAAATGGTTTAATTAATGAATATATTGAATGACATTATGTTATGAGTTA
644 CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTA
* * * *
5351304 TAATATTATAAATTAATACATATGGATATAAAATCTTACAACATTCTTATGCCATATCAATTATT
709 TAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTC
* * * * **
5351369 ATAAATATATTCATTAACGTCCTCCCGAACCAATTGAAATTGTGTAGTATTAGTGATAGATGGAT
774 ATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCAT
5351434 CTAAGTTTTGTGCTACAAAAG
838 CTAAGTTTTGTGCTACAAAAG
* * *
5351455 GAAAAGATCCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTC--T--A-------
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * *
5351509 GGGTATTATAGAGCACAACATACCAACCCTCATCTATTGAATTATGACAGTAAAAAAA-TTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5351573 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGCGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* * *
5351638 AATTCACCTTTGTAAAACCGAATTTAT-TGCTTTTTATGCTTCGCGTAGTGTTTACATCAGCCCA
196 AATTCACCATTGTAAAACCGAATTTATCT-CTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * *
5351702 GTCACACCGAAACAACACAA-TCTTTCATTTTCCGTAATAATTTAACTTAATAATGTCTGTAAGA
260 GTCACACCGAAAC-ACACAACT-TTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* * * *
5351766 ATTCCATAATAATATATATCTCCCTCCAAATGATGATTTTCCCTGAAACTAGCATAACTTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
* * *
5351831 TGAAGAAGTAACTACTACTCCATAATTTTTGTGTCCTCCTTAACCTTTCACGAGATTTCATTTTG
388 TGAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTC-GTTTG
*
5351896 AACCTGAACCCATTAATAAGAAAGGTATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
452 AACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
* *
5351961 TCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACAGATGAATGGTGAATTAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
*
5352026 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGGTATCTGAAATAAAAAAA
580 TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAAT-AAAAAA
* *
5352091 GCAACAATTTTAGTAGGAAAATGGTTTAATTAATGAATATATTGAATGACAATATGTTATAAGTT
644 -CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTT
5352156 ATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGT
708 ATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGT
* * ** * *
5352221 TATAAATATATTCATTTACGTCCTCCCGAACCAATTGAAATTGTGTAGTATTAGTGATAGTTGCA
773 CATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCA
* *
5352286 TCTAAGTTTTGTGTTACAAAAT
837 TCTAAGTTTTGTGCTACAAAAG
* * * *
5352308 GTAAAGATTCAGATCTTGTTTTAATGTCATCTATACTTCTATCCCCGATGTCTATCAAGTCTTTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * *
5352373 GGGTATTACTGAGCACAACATACCAACACTCATCCATTGGATTGTGACCGTAAAAAATCTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5352438 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGATAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
** * *
5352503 AATTCACCATTGTAAAATTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAACCCAA
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * * *
5352568 TCACACCGAAATAACACAACCTTTAGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAAT
261 TCACACCGAAA-CACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAAT
* * * *
5352633 TACATAATAATCTACATCTCCCTCAAAATGATGATTATCCCTGGAACTAGCATAACTTATAGTTG
325 TCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTG
* * * * * *
5352698 AAGAAGTAACTACTACACCATAA-TTTTGTGTCC-CGCTTAATCTTTCTCAAGATTTTGTGTGGA
390 AAGAAGTAACTACTACTCCACAATTTTTGTGTCCTC-CTTAATCTTTCACGAGATTTCGT-TTGA
* *
5352761 ACCTAAAACCATTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
453 ACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
*
5352826 CATTTAAGATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
516 CATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
5352891 TGCATTGATGTCAACATGTTATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATA
581 TGCATTGATGT---C--G--ATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATA
* *
5352956 AAAAAGCAACAATTTTAGGAAGAAAACGGTTTAATTAATGAATATATTGAATGACAACATGTTAT
639 AAAAA-CAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTAT
5353021 AAGTTATAATATTATATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
703 AAGTTATAATA-T-TATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATAT
* * ** *
5353086 CAATTGTTATAAATATATTCATTTACGTCCTCCCGAACCAATTGAAATTGTGTAGTATTAGTGAT
766 CAATTGTCATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGAT
* * *
5353151 AGTTGCATCTAAGTTTTGTGTTACAAAAT
830 AGTTTCATCTAAGTTTTGTGCTACAAAAG
* * * *
5353180 GTAAAGATTCAGATCTTGTTTTAATGTCATCTATACTTCTATCCCCGATGTCTATCAAGTCTTTG
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * *
5353245 GGGTATTACTGAGCACAACATACCAACACTCATCCATTGGATTGTGACCGTAAAAAATCTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5353310 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTATGAATTAATCGAGAGA
131 CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
* *
5353375 AATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAT
196 AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
* * *
5353440 TTACACCGAAACAACACAAAC-TTTCATTTAT-CGTAATAATATAACTTAATAATGTCCGTAAGA
261 TCACACCGAAAC-ACAC-AACTTTTCGTTT-TCCGTAATAATCTAACTTAATAATGTCCGTAAGA
* * * *
5353503 ATTCCATAATAATATACATCTCCCTCTAAATGATGATTGTCCTTGGAACTAACATAACTTGTAGT
323 ATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGT
* * * * *
5353568 TCAAGAAGTAACTACTACTCTACAAATTTTT-TATCCTCCTTAATCTTTCACGAGTTTTCGTGTG
388 TGAAGAAGTAACTACTACTCCAC-AATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGT-TT
* *
5353632 GAACCTAAACACATTAATGAGAAAGGATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
451 GAACCTGAACCCATTAATGAGAAAGG-TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAG
** * * * *
5353697 GAATTTTACATTTTCACTAACTTCTCTTCCACTCCAAACCTATTACACACGAATGGTGAAATAAT
515 CCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAAT
** * * * * * *
5353762 CTT-TTTTTATGTTGATATCGCAAATCACTTATTGTACTCCTGGGCATGATATCT-ATAATAAAA
580 -TTGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCT-GGCATGATATCTGA-AATAAAA
* * * *
5353825 AACAATAATTTTAATAAGAAAACGGTTTAATTAACGAATATATTGAATGACAACATGTTATAAGT
642 AACAACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGT
* *
5353890 TATAATACTT-TAAATTAATACATGTGGATATAAAATCTTGCTACATTCTTATGTCATATCAATT
707 TATAATA-TTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATT
* * * * *
5353954 GTCATAAATATCTTCATCAACGTCATCCCGAACCCTTTGAAATTTTGAAGTATTATTGATAGTTT
771 GTCATAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTT
*
5354019 CATCTAAGTTTTGTGCTACAAAAT
835 CATCTAAGTTTTGTGCTACAAAAG
* * * * * *
5354043 ATAAAGATTCAGATCTTGTTTCAACGTCATCTTTACTTCCATCCCCGATGTCTACCAAGTATCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* *
5354108 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGAATGTGATAGT-AAAAAACTTGTTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
*
5354172 CACTTAAGAAGAAAATACATATGA-TGCATTCATCAATCGTTGACCAGTGTGAATTAATCAAGAG
131 CACTTAAGAAGAAAATACATATGACT-CATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAG
* * * * *
5354236 TAATTCACCATTTTAAAACCTAATTTATCTCTTTTTATACCTCGAGTAGTGCTTACATCAGCCCA
195 AAATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* *
5354301 GTCACACCGAAACAACACAACCTTTCGTTTTCCTTAATAATCTAACTTAATAATGTCCGTAAGAA
260 GTCACACCGAAAC-ACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAA
* *
5354366 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCCTAACTTGTAATT
324 TTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTT
* * * * *
5354431 GAAGAAGCAACTATTACTCCACAATTTTTGTGTCCTCCTAAATCTTTCACTAGATTTCGTGTGGA
389 GAAGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGT-TTGA
* *
5354496 ACCTGAACCCATTAATGAAAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGTGAAAGC
453 ACCTGAACCCATTAATGAGAAAGG--TTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGC
* * *
5354561 CATTTTACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACATGAATGGTGAATTAATT
516 CATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATT
*
5354626 TGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAAAC
581 TGCATTGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAAT-AAAAAAC
** *
5354691 AACAATTTTAGTAAGAAAACAGTTTAATTAAAGAATATATTGAATGACAACATGTTATAAGTTAT
645 AACAATTTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTAT
5354756 AATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCA
710 AATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCA
* * * * *
5354821 TAAATATATTCATCAACATCCTCCCGAACCCATTGAAATTGTGTAATATTTGTGATATTTTCATC
775 TAAATATCTTCATCAACGTCCTCCC-AACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATC
* ***
5354886 TAACTTTTGTGCTACAATTT
839 TAAGTTTTGTGCTACAAAAG
* * * * * * *
5354906 GTAAAGATTCAGATCTTGTTTTATTGTCGTCTATACTTCCATCCCCGATATCTATCAAGTGTCTA
1 GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
* * * *
5354971 AGGTATTACTGAGCACAACATACCAACCCTTATCCATTGGATTGTGATAGTAAAAAAACTT
66 GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTT
5355032 ATAAATTAAT
Statistics
Matches: 15963, Mismatches: 2716, Indels: 2953
0.74 0.13 0.14
Matches are distributed among these distances:
811 24 0.00
812 14 0.00
813 4 0.00
814 2 0.00
816 8 0.00
817 44 0.00
818 91 0.01
819 15 0.00
820 104 0.01
821 100 0.01
822 46 0.00
823 156 0.01
824 85 0.01
825 114 0.01
826 64 0.00
827 37 0.00
828 89 0.01
829 170 0.01
830 205 0.01
831 111 0.01
832 86 0.01
833 126 0.01
834 39 0.00
835 44 0.00
836 267 0.02
837 120 0.01
838 84 0.01
839 120 0.01
840 105 0.01
841 71 0.00
842 274 0.02
843 291 0.02
844 99 0.01
845 229 0.01
846 200 0.01
847 377 0.02
848 216 0.01
849 123 0.01
850 71 0.00
851 270 0.02
852 793 0.05
853 285 0.02
854 47 0.00
855 97 0.01
856 158 0.01
857 625 0.04
858 558 0.03
859 158 0.01
860 145 0.01
861 510 0.03
862 748 0.05
863 1629 0.10
864 399 0.02
865 684 0.04
866 97 0.01
867 65 0.00
868 189 0.01
869 26 0.00
870 268 0.02
871 184 0.01
872 633 0.04
873 59 0.00
874 9 0.00
875 8 0.00
876 22 0.00
877 24 0.00
878 6 0.00
879 28 0.00
880 41 0.00
881 51 0.00
882 28 0.00
883 35 0.00
884 17 0.00
885 11 0.00
886 32 0.00
887 21 0.00
888 13 0.00
889 11 0.00
890 12 0.00
891 17 0.00
892 12 0.00
893 13 0.00
894 22 0.00
895 14 0.00
896 20 0.00
897 15 0.00
898 18 0.00
899 20 0.00
900 23 0.00
901 34 0.00
902 37 0.00
903 45 0.00
904 52 0.00
905 18 0.00
906 26 0.00
907 43 0.00
908 26 0.00
909 46 0.00
910 50 0.00
911 69 0.00
912 60 0.00
913 48 0.00
914 50 0.00
915 39 0.00
916 37 0.00
917 72 0.00
918 48 0.00
919 60 0.00
920 68 0.00
921 56 0.00
922 55 0.00
923 67 0.00
924 55 0.00
925 61 0.00
926 28 0.00
927 26 0.00
928 19 0.00
929 40 0.00
930 58 0.00
931 32 0.00
932 37 0.00
933 46 0.00
934 21 0.00
935 15 0.00
936 19 0.00
937 23 0.00
938 36 0.00
939 16 0.00
940 45 0.00
941 29 0.00
942 30 0.00
943 46 0.00
944 66 0.00
945 21 0.00
946 41 0.00
947 30 0.00
948 15 0.00
949 14 0.00
950 8 0.00
951 19 0.00
952 17 0.00
953 4 0.00
954 9 0.00
955 11 0.00
956 19 0.00
957 15 0.00
958 14 0.00
959 30 0.00
960 8 0.00
961 9 0.00
962 19 0.00
963 4 0.00
964 23 0.00
965 1 0.00
966 12 0.00
967 10 0.00
968 1 0.00
969 6 0.00
970 10 0.00
971 5 0.00
972 15 0.00
973 7 0.00
974 16 0.00
975 2 0.00
976 11 0.00
977 13 0.00
978 21 0.00
979 9 0.00
980 3 0.00
981 12 0.00
982 10 0.00
983 15 0.00
984 2 0.00
985 3 0.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (858 bp):
GTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAGTCTCTG
GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTT
CACTTAAGAAGAAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGA
AATTCACCATTGTAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAG
TCACACCGAAACACACAACTTTTCGTTTTCCGTAATAATCTAACTTAATAATGTCCGTAAGAATT
CCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGA
AGAAGTAACTACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTTTGAACC
TGAACCCATTAATGAGAAAGGTTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTT
AACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCAT
TGATGTCGATACCACAAATCACTTATTTTTCTCCTGGCATGATATCTGAAATAAAAAACAACAAT
TTTAGTAAGAAAATGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATT
ATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATA
TCTTCATCAACGTCCTCCCAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTT
TGTGCTACAAAAG
Found at i:5342175 original size:771 final size:771
Alignment explanation
Indices: 5341010--5342515 Score: 1968
Period size: 771 Copynumber: 1.9 Consensus size: 771
5341000 AAAACCTATC
* * *
5341010 TCTTTTTATACCTCGAGTAGTGCTTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTT
1 TCTTTTCATACCTCGAGTAGTGCTTACATCAACCCAGTCACACCGAAACAACACAACC-TTCGAT
* *
5341075 TCCTTAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAAT
65 TCCATAATAATCTAACTTAATAATGTCCGAAAGAATTCCATAATAATCTACATCT--CTCCAAAT
* * * *
5341140 GATGATTGTCCCGGAACTAGCCTAACTTGTAATTGAAGAAGAACTATTACTCCACAATTTTGTGT
128 AATGATTGTCCCGAAACTAGCATAACTTGTAATTGAAGAAGAACTACTACTCCACAATTTTGTGT
* * * *
5341205 CCTCCTTAATCTTTCACTAGATTTCGTGTGGAACCTGAACCCATAAATGAAAAAGGCATATATCT
193 CCTCCTTAATCTTTCACGAGATTTCGTGTGAAACCTAAACCCATAAATGAAAAAGACATATATCT
*
5341270 TTTAACAATTCTATTGGACCTTGTGAAAGCCATTTACATCTTCACTAACTTCTCTTCCACTCCAA
258 TTTAACAATTCTATTGGACCTTGAGAAAGCCATTTACATCTTCACTAACTTCTCTTCCACTCCAA
*
5341335 AACTATAACACATGAATGGTGAATATTGCATTGATGTCGATACCGCAAATCACTTTTTCTCCTGG
323 AACTAT-A-ACATGAATGGTGAATATTGCATTGATGTCGATACCGCAAATCACTTATTCTCCTGG
* *
5341400 CATGATA-TTGAAATAAAAA-AAACAATTTTAGTAAGAAAACAGTTTAATTAATG-AATA-TGAA
386 CATGATACTTGAAA-AAAAACAAA-AA-TTTAGTAAGAAAAC-GGTTAATTAACGAAATACTGAA
*
5341461 TGACAACATGTTATAAGTTAT-ATATATAAATTAATAC-ATGGATATAAAATCTTACTACATTCT
447 TGAAAACATGTTATAAGTTATAAT-TATAAATTAATACAATGGATATAAAATC-TACTACATTC-
*
5341524 TATGTCATATCAATGTCATAAATA-ATTCATCAACATCCTCCCGAACCCATTGAAATT-GTA-AT
509 TATCTC--ATCAATGTCATAAATATATTCATCAACATCCTCCCGAA-CCATTGAAATTGGTAGAT
* * * * *
5341586 TTGTGATATTTTCATCTAACTTTTGTGCTAC-AATTGTAAAGATTAAGATCTTGTTTATTGTCGT
571 TAGTGATATTTTCATCTAA-GTTTGTG-TACAAATGGTAAAGATT-AGATCTTGTTCATTGTCAT
* * * *
5341650 CTATACTTCCATCCCCGATATCTATCAAG-GT-TAAGG-TATTACTGAGCAC-ACATACCAACCT
633 CCATACTTCCA--CCCGATACCTATCAAGTCTCTAAGGATATTACAGAGCACAACATACCAACCT
*
5341711 -TATCCATTGGATTGTGATAGTAAAAAAACTTATAAATTAATCGAGAGAAATTCACCATTATAAA
696 CT-TCCATTGGATTGTGACAGTAAAAAAACTTATAAATTAATCGAGAGAAATTCACCATTATAAA
5341775 ACTGAATTAATA
760 ACTGAATTAATA
* * * **
5341787 TCTTTTCATCCCTCGAGTAGTG-TTACATCAACCCTGTTACACCGAAACAATGCAACC-TC-ATT
1 TCTTTTCATACCTCGAGTAGTGCTTACATCAACCCAGTCACACCGAAACAACACAACCTTCGATT
5341849 CCATAA-ACATCTAAC-TAATAATGTCCGAAAGAATTCCAT-A-AATCTACATCT-TCCAAATAA
66 CCATAATA-ATCTAACTTAATAATGTCCGAAAGAATTCCATAATAATCTACATCTCTCCAAATAA
* * * *
5341909 TGATTTTCTCTGAAACTAGCATAACTTGTAGTTGAAGAAGAAACTACTACTCCACAATTTTTTAG
130 TGATTGTC-CCGAAACTAGCATAACTTGTAATTGAAGAAG-AACTACTACTCCACAATTTTGT-G
* * *
5341974 TCCTCCTTAATCTTTCACGGGATTTCGTGTGAAACCTAAACCCATTAATG-AGAAGACATATATC
192 TCCTCCTTAATCTTTCACGAGATTTCGTGTGAAACCTAAACCCATAAATGAAAAAGACATATATC
*
5342038 TTTTAACAAATTCTATTTGG-CCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACT
257 TTTTAAC-AATTCTA-TTGGACCTTGAGAAAGCCATTT-ACATCTTCACTAACTTCTCTTCCACT
* * * *
5342102 CCAAACCTAT-ACATGAATGGTGAATTAATTTGCATTGATGTTGATACTGCAAATCACTTATTGT
319 CCAAAACTATAACATGAATGGTGAA-T-A-TTGCATTGATGTCGATACCGCAAATCACTTATTCT
*
5342166 -CTGGGCATGATATCTTTAAAAAAAACAAAAATTTAGTAAGAAAACGGTTAATTAACGAAAATAC
381 CCT-GGCATGATA-CTTGAAAAAAAACAAAAATTTAGTAAGAAAACGGTTAATTAACG-AAATAC
* *
5342230 TGAATGAAAACATGTTATAAGTTATAATTTTAAATTAATACATATGGTTATAAAATCTACTACAT
443 TGAATGAAAACATGTTATAAGTTATAATTATAAATTAATACA-ATGGATATAAAATCTACTACAT
* ** *
5342295 TCTATCTCATCAATGTCATAAATATCTTCATCAATGTCTTCCCGAACCATTGAAATTGGTAGTAT
507 TCTATCTCATCAATGTCATAAATATATTCATCAACATCCTCCCGAACCATTGAAATTGGTAG-AT
*
5342360 TAGTGATATTTTCATCTAAGTTTGTGTACAAATGGTAAAGATTAGATCTTGTTCATTGTCATCCC
571 TAGTGATATTTTCATCTAAGTTTGTGTACAAATGGTAAAGATTAGATCTTGTTCATTGTCATCCA
* **
5342425 TACTTCCACCCGATGCCTATCAAGTCTCTGGGGATATTACAGAGCACAACATACCAACCTCTTCC
636 TACTTCCACCCGATACCTATCAAGTCTCTAAGGATATTACAGAGCACAACATACCAACCTCTTCC
* *
5342490 TTTGGATTGTGACCGTAAAAAAACTT
701 ATTGGATTGTGACAGTAAAAAAACTT
5342516 GTTTCATTAT
Statistics
Matches: 640, Mismatches: 59, Indels: 63
0.84 0.08 0.08
Matches are distributed among these distances:
767 15 0.02
768 41 0.06
769 40 0.06
770 106 0.17
771 122 0.19
772 87 0.14
773 93 0.15
774 72 0.11
775 14 0.02
776 30 0.05
777 20 0.03
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (771 bp):
TCTTTTCATACCTCGAGTAGTGCTTACATCAACCCAGTCACACCGAAACAACACAACCTTCGATT
CCATAATAATCTAACTTAATAATGTCCGAAAGAATTCCATAATAATCTACATCTCTCCAAATAAT
GATTGTCCCGAAACTAGCATAACTTGTAATTGAAGAAGAACTACTACTCCACAATTTTGTGTCCT
CCTTAATCTTTCACGAGATTTCGTGTGAAACCTAAACCCATAAATGAAAAAGACATATATCTTTT
AACAATTCTATTGGACCTTGAGAAAGCCATTTACATCTTCACTAACTTCTCTTCCACTCCAAAAC
TATAACATGAATGGTGAATATTGCATTGATGTCGATACCGCAAATCACTTATTCTCCTGGCATGA
TACTTGAAAAAAAACAAAAATTTAGTAAGAAAACGGTTAATTAACGAAATACTGAATGAAAACAT
GTTATAAGTTATAATTATAAATTAATACAATGGATATAAAATCTACTACATTCTATCTCATCAAT
GTCATAAATATATTCATCAACATCCTCCCGAACCATTGAAATTGGTAGATTAGTGATATTTTCAT
CTAAGTTTGTGTACAAATGGTAAAGATTAGATCTTGTTCATTGTCATCCATACTTCCACCCGATA
CCTATCAAGTCTCTAAGGATATTACAGAGCACAACATACCAACCTCTTCCATTGGATTGTGACAG
TAAAAAAACTTATAAATTAATCGAGAGAAATTCACCATTATAAAACTGAATTAATA
Found at i:5344881 original size:636 final size:636
Alignment explanation
Indices: 5343720--5344888 Score: 1686
Period size: 636 Copynumber: 1.8 Consensus size: 636
5343710 ATTCATTAAC
* *
5343720 GTCCCCCCGAACCAATTGAAATTGTGTAATATTAGTGATAGTTGCATCTAAGTTTTTTGCTACAA
1 GTCCCCCCGAACCAATTGAAATTGTGTAATAGTAGTGATAGTTGCATCTAAGTTTTGTGCTACAA
*
5343785 AATGTAAAGATTCAGATCTTGTTTTAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCT
66 AATGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCT
* * * *
5343850 TTGGGGTATTACTGAGCACAACATACTAACATCATCCATTGGATTGTGACGTAAAAAACTGTTTC
131 CTGGGGTATTACAGAGCACAACATACCAACATCATCCATTGGATTGAGACGTAAAAAACTGTTTC
* *
5343915 ACTTGAGAAAAAATACTATGACTAATTCATCAACCGTTGACCAGTGTGAATTAATCGAGAGAAAT
196 ACTTAAGAAAAAATACTATGAC-AATT-ATCAACCGTTGACCAGTATGAATTAATCGAGAGAAAT
* * *
5343980 TCACCATTGTAAAATTGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGTCTAGTCA
259 TCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCA
* * * **
5344045 CACCGAAATAGCACAACCTTTGGTTTTTCATAATAATCTAACTTAATAATGTCTGTAAGAATTAC
324 CACCGAAACAACACAAACTTTCATTTTTCATAATAATCTAACTTAATAATGTCTGTAAGAATTAC
* *
5344110 ATAATAATCTACATCTCCTCAAATGATGATTGTCCCTGGAACTAGCATAACTGTAGTTGAAGAAG
389 ATAATAA-CTACATCTCCTC--ATGATGATTGTCCCTGGAACTAACATAACTGTAGTTCAAGAAG
* * * *
5344175 TAACTACTACACCATAATTTTGTGTTCTGCTTAATCTTTCTCAGATTTGTGTAACCGAAACATTA
451 TAACTACTACACCACAATTTTGTGTCCTCCTTAATCTTTCACAGATTTGTGTAACCGAAACATTA
5344240 TGAGAAAGGCATTAATTAACAATATTGACCTGAGAACATTTAAATTATAATCCTTATAAATTACA
516 TGAGAAAGG-ATTAATTAACAATATTGACCTGAGAACATTTAAATTATAATCCTTATAAATTACA
5344305 CATATGGTATAAAATCACCACACTTATTCATACAATTGTATAAAAAGAAACTTATAA
580 CATATGGTATAAAATCACCACACTTATTCATACAATTGTATAAAAAGAAACTTATAA
* * * * *
5344362 GTCCTCCCGAACCCATTGAAATT-T-T-GTAGTAGTGATAGTTTCATCTTAGTTTTGTGCTACAA
1 GTCCCCCCGAACCAATTGAAATTGTGTAATAGTAGTGATAGTTGCATCTAAGTTTTGTGCTACAA
5344424 AATGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCT
66 AATGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCT
*
5344489 CTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATAATGAGA-GTAAAAAAACT-
131 CTGGGGTATTACAGAGCACAACATACCAA-CATCATCCATTGGAT--TGAGACGT-AAAAAACTG
*
5344552 TGTTCACTTAAGAAGAAAA-A-TATGAC-A-T-TCAATCGTTGACCAGTATGAATTAATCGAGAG
192 T-TTCACTTAAGAA-AAAATACTATGACAATTATCAACCGTTGACCAGTATGAATTAATCGAGAG
5344612 AAATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
255 AAATTCACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCA
* * *
5344677 TTTACACCGAAACAACACAAACTTTCATTTTTCGTAATAATCTAACTTAATAATGT-TCGTAAGA
320 GTCACACCGAAACAACACAAACTTTCATTTTTCATAATAATCTAACTTAATAATGTCT-GTAAGA
* * *
5344741 ATTCCATAATAA-TACATCTCC-C-T-CTGA-TGTCCTTGGAACTAACATAACTTGTAGTTCAAG
384 ATTACATAATAACTACATCTCCTCATGATGATTGTCCCTGGAACTAACATAAC-TGTAGTTCAAG
* * *
5344801 AAGTAACTACTACTCCACAATTTTTTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTA
448 AAGTAACTACTACACCACAATTTTGTGTCCTCCTTAATCTTTCAC-AGATTT-GTGT--AACCGA
5344866 AACCCATTAATGAGAAAGGATTA
509 AA--CATT-ATGAGAAAGGATTA
5344889 TATCTTTTAA
Statistics
Matches: 473, Mismatches: 39, Indels: 37
0.86 0.07 0.07
Matches are distributed among these distances:
628 19 0.04
629 52 0.11
630 7 0.01
631 4 0.01
633 8 0.02
634 9 0.02
635 9 0.02
636 167 0.35
638 1 0.00
639 123 0.26
640 15 0.03
641 10 0.02
642 45 0.10
643 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (636 bp):
GTCCCCCCGAACCAATTGAAATTGTGTAATAGTAGTGATAGTTGCATCTAAGTTTTGTGCTACAA
AATGTAAAGATTCAGATCTTGTTTCAATGTCATCTATACTTCCATCCCCGATGTCTATCAAGTCT
CTGGGGTATTACAGAGCACAACATACCAACATCATCCATTGGATTGAGACGTAAAAAACTGTTTC
ACTTAAGAAAAAATACTATGACAATTATCAACCGTTGACCAGTATGAATTAATCGAGAGAAATTC
ACCATTGTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACA
CCGAAACAACACAAACTTTCATTTTTCATAATAATCTAACTTAATAATGTCTGTAAGAATTACAT
AATAACTACATCTCCTCATGATGATTGTCCCTGGAACTAACATAACTGTAGTTCAAGAAGTAACT
ACTACACCACAATTTTGTGTCCTCCTTAATCTTTCACAGATTTGTGTAACCGAAACATTATGAGA
AAGGATTAATTAACAATATTGACCTGAGAACATTTAAATTATAATCCTTATAAATTACACATATG
GTATAAAATCACCACACTTATTCATACAATTGTATAAAAAGAAACTTATAA
Found at i:5355799 original size:812 final size:810
Alignment explanation
Indices: 5354223--5355843 Score: 2451
Period size: 812 Copynumber: 2.0 Consensus size: 810
5354213 GACCAGTGTG
* * * * * *
5354223 AATTAATCAAGAGTAATTCACCATTTTAAAACCTAATTTATCTCTTTTTATACCTCGAGTAGTGC
1 AATTAATCAAGAGAAATTCACCATTGTAAAACCTAATTAATATATTTTCATACCTCGAGTAGTGC
* * * *
5354288 TTACATCAGCCCAGTCACACCGAAACAACACAACCTTTCGTTTTCCTTAATAATCTAACTTAATA
66 TTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATATTCCATAATAATCTAACTTAATA
*
5354353 ATGTCCGTAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGC
131 ATGTCCGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGC
* * * *
5354418 CTAACTTGTAATTGAAGAAGCAACTATTACTCCACAATTTTTGTGTCCTCCTAAATCTTTCACTA
196 ATAACTTGTAATAGAAGAAGCAACTACTACTCCACAATTTTTGTGTCCTCCTAAATCTTTCACGA
* * *
5354483 GATTTCGTGTGGAACCTGAACCCATTAATGAAAAAGGCATTATATCTTTTAACAATTCTATTTGG
261 GATTTCGTGTGAAACCTAAACCCATTAATGAAAAAGACATTATATCTTTTAACAATTCTATTTGG
* *
5354548 ACCTTGTGAAAGCCATTTTACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACATGAA
326 ACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACATGAA
*
5354613 TGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTTTTCTCCTGGCATGATATCT
391 TGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTGTTCTCCTGGCATGATATCT
* * * *
5354678 GAAATAAAAAAACAACAATTTTAGTAAGAAAACAGTTTAATTAAAGAATATATTGAATGACAACA
456 --AATAAAAAAACAAAAATTTTAGTAAGAAAACAGTTTAATTAAAGAAAATACTGAATGAAAACA
*
5354743 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTC
519 TGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATCTC
*
5354808 ATATCAATTGTCATAAATATATTCATCAACATCCTCCCGAACCCATTGAAATTGTGTAATATTTG
584 ATATCAATTGTCATAAATATATTCATCAACATCCTCCCGAACCCATTGAAATTGTGTAATATTAG
* * * * *
5354873 TGATATTTTCATCTAACTTTTGTGCTACAATTTGTAAAGATTCAGATCTTGTTTTATTGTCGTCT
649 TGATATTTTCATCTAACTTTTGTGCTACAAATGGTAAAGATTCAGATCTTGTTTCATTGTCATCC
* * *
5354938 ATACTTCCATCCCCGATATCTATCAAGTGTCTAAGGTATTACTGAGCACAACATACCAACCCT-T
714 ATACTTCCATCCCCGATACCTATCAAGTCTCTAAGGTATTACAGAGCACAACATACCAACCCTCT
*
5355002 ATCCATTGGATTGTGATAGTAAAAAAACTTATA
779 -TCCATTGGATTGTGACAGTAAAAAAACTTATA
* *
5355035 AATTAATCGAGAGAAATTCACCATTGTAAAA-CTGAATTAATATATTTTCATGCCTCGAGTAGTG
1 AATTAATCAAGAGAAATTCACCATTGTAAAACCT-AATTAATATATTTTCATACCTCGAGTAGTG
* * * *
5355099 TTTACATCAACCCTGTTACACCGAAACAACGCAACCTTTCATATTCCATAA-ACATCTAACTTAA
65 CTTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATATTCCATAATA-ATCTAACTTAA
* * * *
5355163 TAATGTCCGAAAGAATTCCATAATAATCTACATCTTCTTCCAAATGATGATTTTCTCTGGAACTA
129 TAATGTCCGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTA
* * *
5355228 GCATAACTTGTAGTAGAAGAAGTAACTACTACTCCACAATTTTT-TAGTCCTCCTTAATCTTTCA
194 GCATAACTTGTAATAGAAGAAGCAACTACTACTCCACAATTTTTGT-GTCCTCCTAAATCTTTCA
* *
5355292 CGGGATTTCGTGTGAAACCTAAACCCATTAATGAGAAAGACATTATATCTTTTAACAAATTCTAT
258 CGAGATTTCGTGTGAAACCTAAACCCATTAATGAAAAAGACATTATATCTTTTAAC-AATTCTAT
* * *
5355357 TTGGACCTTGAGAAAGGCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAACCTATTACACA
322 TTGGACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACA
* * *
5355422 TGAATGGTGAATTAATTTGCATTGATGTTGATACTGCAAATCACTTATTGTTCTCTTGGGCATGA
387 TGAATGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTGTTCTCCT-GGCATGA
* * *
5355487 TATCT-TTAAAAAAACAAAAATTTTAGTAAGAAAACGGTTTAATTAACGAAAATACTGAATGAAA
451 TATCTAATAAAAAAACAAAAATTTTAGTAAGAAAACAGTTTAATTAAAGAAAATACTGAATGAAA
* *
5355551 ACATGTTATAAGTTATAATATTTTAAATTAATACATATGGTTATAAAATCTTACTACATTCTTAT
516 ACATGTTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTAT
* ** * *
5355616 CTCATATCAATTGTCATAAATATCTTCATCAATGTCTTCCCGAACCCATTGAAATTGTGTAGTAT
581 CTCATATCAATTGTCATAAATATATTCATCAACATCCTCCCGAACCCATTGAAATTGTGTAATAT
* * *
5355681 TAGTGATATTTTCATCTAAGTTTTGTGCTACAAATGGTAAATATTTAGATCTTGTTTCATTGTCA
646 TAGTGATATTTTCATCTAACTTTTGTGCTACAAATGGTAAAGATTCAGATCTTGTTTCATTGTCA
* * **
5355746 TCCCTACTTCCATCCCCGATGCCTATCAAGTCTCTGGGGATATTACAGAGCACAACATACCAACC
711 TCCATACTTCCATCCCCGATACCTATCAAGTCTCTAAGG-TATTACAGAGCACAACATACCAACC
*
5355811 CTCTTCCATTGGATTGTGACCGTAAAAAAACTT
775 CTCTTCCATTGGATTGTGACAGTAAAAAAACTT
5355844 GTTTCATTTA
Statistics
Matches: 727, Mismatches: 75, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
811 267 0.37
812 326 0.45
813 122 0.17
814 12 0.02
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (810 bp):
AATTAATCAAGAGAAATTCACCATTGTAAAACCTAATTAATATATTTTCATACCTCGAGTAGTGC
TTACATCAACCCAGTCACACCGAAACAACACAACCTTTCATATTCCATAATAATCTAACTTAATA
ATGTCCGAAAGAATTCCATAATAATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGC
ATAACTTGTAATAGAAGAAGCAACTACTACTCCACAATTTTTGTGTCCTCCTAAATCTTTCACGA
GATTTCGTGTGAAACCTAAACCCATTAATGAAAAAGACATTATATCTTTTAACAATTCTATTTGG
ACCTTGAGAAAGCCATTTAACATCTTCACTAACTTCTCTTCCACTCCAAAACTATAACACATGAA
TGGTGAATTAATTTGCATTGATGTCGATACCGCAAATCACTTATTGTTCTCCTGGCATGATATCT
AATAAAAAAACAAAAATTTTAGTAAGAAAACAGTTTAATTAAAGAAAATACTGAATGAAAACATG
TTATAAGTTATAATATTATAAATTAATACATATGGATATAAAATCTTACTACATTCTTATCTCAT
ATCAATTGTCATAAATATATTCATCAACATCCTCCCGAACCCATTGAAATTGTGTAATATTAGTG
ATATTTTCATCTAACTTTTGTGCTACAAATGGTAAAGATTCAGATCTTGTTTCATTGTCATCCAT
ACTTCCATCCCCGATACCTATCAAGTCTCTAAGGTATTACAGAGCACAACATACCAACCCTCTTC
CATTGGATTGTGACAGTAAAAAAACTTATA
Found at i:5359229 original size:865 final size:864
Alignment explanation
Indices: 5356428--5362386 Score: 8777
Period size: 865 Copynumber: 6.9 Consensus size: 864
5356418 GTTATAAGTT
* * * * *
5356428 AATACATATGACCCATTCATTAATCATTCACCAGTGTGAATTAATCGAGAGAAATT-AGCCATTT
1 AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCA-CCATTG
** * * * *
5356492 TAAAACTTAATTTGTCTCTTTTTATACCTCGAGTATTGTTTACATCAGCCCAGTAACACCGAAAC
65 TAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAAC
* * * * * ** *
5356557 AGCAAAACCTATCGTTTTCCTTAATAATTTAACTTAATAATGTCTATAAGAATTCCATAATAATA
130 AGTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATC
* * * * *
5356622 TACATCTCCCTCCAAATTATGATTGTCCTTCGAACTAACATAACTTGTAGTTGAAAAAGTAACTA
195 TACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTA
* * * * * *
5356687 ATACTCCACAATTTTTGGGTACC-CCTTAAT-TATTCACAAAATTTTGTGTGGAACCTAAACCCG
260 CTACTCCACAATTTTTGTGT-CCTCCTTAATCT-TTCACGAGATTTCGTGTGGAACCTAAACCCA
* * * *
5356750 TTAATGAGAAAGGCATTATATCTTTTAACAACTCTATTTGGACCTTTAGAAAGCTATTTAACATC
323 TTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATC
* * * *
5356815 TTCACTAACTTCTCTTCCACTCCAAACCTATTATAGATGAATAGTGAATTAATTTGCATTAATGT
388 TTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGT
* * * * * * *
5356880 CTATACCGAAAATCATTTATTTTCCTCCTCGGCATGATATATATAATAACTAAAA-AAAAAATTT
453 CGATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAA--AAAACAACAATTTT
* * *
5356944 ACTAAGAAAATAGTTTAATTAATGAATATATTGAATGACAATATGTTATAAGTTATAATATTAGA
516 AGTAAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATA
*
5357009 AATTAATACATATGGATATAAAATCTTACTGCATTCTTATGTCATATCAATTTTCATAAATATCT
581 AATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCT
* * *
5357074 TCATCAACGTCCTTCTGAACCCATTGAAATTGTGTAGTATTAGTGATAATTTCATCTAAGTTTTG
646 TCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTG
* *
5357139 TGGTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATATCTA
711 TGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTA
* * * *
5357204 TCAAGTCTCTGGGGTATTACAGAGCATAACATACTAACCCTCAACTATTGGATTGTGACAG-AAA
776 TCAAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAA
* *
5357268 AAATACTTGTTTCACCTAAGAAAAA
841 AAA-ACTTGTTTCACTTAAGAAGAA
* * * * *
5357293 AATACATATGACTCATTCATCAATCGTTGAGAAGTGTGAACTAATCGAGAGAAATTAACAATTGT
1 AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCACCATTGT
* * *
5357358 AAAACCGAACTTATCTCTTTTTATACCTCGAGTAGTGTTTACATCAGCCCAATCACACCGAAACA
66 AAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
** * * *
5357423 ACACAACCTTTCATTTTCCATAATAATCTAACTTAATAATGTCCATAAGAATTCCATAATAATCC
131 GTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * * * *
5357488 ACATCTCCCTCTAAATGATGATTTTCCTTGGAACTAGCATAATTTGTAGTTGAAGAAGAAACTAC
196 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
* * *
5357553 AACTCCACAA-TTTTGTGTCCTCGTTAATCTTTCACGAGATTTCGTTTGGAACCTAAACCCATTA
261 TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTA
* * *
5357617 ATGAGAAAGGCATTATATCTTTTAACAATTCCACTTGGACCATGAGAAAGT-CATTTAACATCTT
326 ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAA-TCCATTTAACATCTT
* * *
5357681 CACTAACTTCTCTTCCACTCCAAACCTATTACATAAGAATGATGAATTAATTTGCATTGATGTCG
390 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
* *
5357746 ATACCGCATATCACTTATTTTTCTCCTAGGCATGAAATATATAATAACAAAACAACAATTTTAGT
455 ATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAA-AAAACAACAATTTTAGT
* * *
5357811 AA-AAAACAGTTTAATTAATGAATATATAGAATGACAACATGTTATAGGTTATAATATTATAAAT
519 AAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
5357875 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
584 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
**
5357940 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTTA
649 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* *
5358005 TAGAAAAGGTAAAGATTTAGATCTTG-TT-AATGTCATCTCTACTTCCATCCCCGATGTCTATCA
714 TACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* *
5358068 AGTCTCTGGGGGTATTACAGACCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAA
779 AGTCTCT-GGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAA
*
5358133 AA-TTGTTTCTCTTAAGAAGAA
843 AACTTGTTTCACTTAAGAAGAA
* * * * * *
5358154 AATACAAATGACTCATTTATCAATCATTGACCAGTGTGAATTAATTGAGAGTAATTCACCATTTT
1 AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCACCATTGT
*
5358219 AAAACCTAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
66 AAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* * * *
5358284 GTACAACATTTCGTTTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTCCTTAATAATTT
131 GTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* * *
5358349 ACATCTCCCTCCAAATGATGATTGTCCCTGGAAGTAGCATAACTTGTAGTAGAATAAGTAACTAC
196 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
*
5358414 TAGTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTA
261 TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTA
* * *
5358479 CTAAGAAAGGCATTATATCTTTTAA-ATATTCTATTTGGACCTTTAGAAATCCATTTAACATCTT
326 ATGAGAAAGGCATTATATCTTTTAACA-ATTCTATTTGGACCTTGAGAAATCCATTTAACATCTT
*
5358543 CACTAATTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
390 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
* * * * *
5358608 ATACTGCAAATCACTTATTTTTCTCCTAGGCATTATATCTGTAATAAGAAAACAACAATTTTTGT
455 ATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAA-AAAACAACAATTTTAGT
*** *
5358673 AAGAAAGCGGTTTAATTAATGAATATATTCAATGACAACATGTTATAAGTTATAATATTATAAAT
519 AAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * * *
5358738 TAATACATATGGATATAAAATCTTACTAAAGTCATATGTCATATCAATTGTCATAAATATCTTCA
584 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
* * *
5358803 TCAACGTCCTCTCGAACCCATTGCAATTGTGTAGTATTAGTGATAGTTTCATCTATGTTTTGTGC
649 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* * * *
5358868 TACAAAAGGTAAAGATTCAAATCTTGTTTCAATGTCATCTCTACTTACATTCTCGATGTCTATCA
714 TACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* *
5358933 AGTCTCTGGGGTATTACAGAGTACAACATACCAACCCTTATCCATTGGATAT-TGACAG-AAAAA
779 AGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGAT-TGTGACAGTAAAAA
5358996 ATACTTGTTTCACTTAAGAAGAA
843 A-ACTTGTTTCACTTAAGAAGAA
* * * * *
5359019 AATACATATGGCGCATTCATCAATCGTTGAGAAGTGTGAATTAATCGAGAGTAATTCACCATTGT
1 AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCACCATTGT
* * * *
5359084 AAAACCCAATTAATATCTTTTTATGCCTGGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
66 AAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
* * *
5359149 GTACAACCTTTTGTTTTCCATAATAATCTAACTTAATAATGTCCATAAGAATTCCATAATAATAT
131 GTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
* *
5359214 ACATCTCCATCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAATAAGTAACTAC
196 ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
*
5359279 TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTA
261 TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTA
* * * * *
5359344 ATGAGGAAGGCATTATATCTTTTAAAAATTCTATTTGCACCTTGAGAAAGCCATTTAACATCATC
326 ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATCTTC
* * *
5359409 ACTAACTTATCATCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTTATGTCGA
391 ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
* * *
5359474 TACCGCAAATCACTTATTTTTCTCCTGGGCATGATATCTATAATAAAAAACAATAATTTTAGTAA
456 TACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAAAAAACAACAATTTTAGTAA
**
5359539 GAAAAGGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTA
521 GAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTA
*
5359604 ATACATATGGATATAAAATCTTACTACATTCTTATATCATATCAATTTTCATAAATATCTTCATC
586 ATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCATC
* * * *
5359669 AACGTCCTCCCGAACCCATTGAAATTGCGTAGTATTAGTGATAATTTTATCTAAGTTTTGTTCTA
651 AACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTA
* * *
5359734 CTAAAGGTAAAGATTCAGATCTTGTTTCAATGCCATCTCTACTTCCAACCCCGATGTCTATCAAG
716 CAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAG
** * *
5359799 TCTCTGAGGGTATTACAGAGCACAACATACTGACCCTCAACCATTAGATTGTGACAGTAAAAAAA
781 TCTCTG-GGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAA
*
5359864 CTTGTTTCACTTAAGATGAA
845 CTTGTTTCACTTAAGAAGAA
* * * *
5359884 AATACATATGACTTATTCATCAATCGTTGACCAA-TGTGAATTAATCGATAGAAATTCAACATTG
1 AATACATATGACTCATTCATCAATCATTGA-CAAGTGTGAATTAATCGAGAGAAATTCACCATTG
* * *
5359948 TAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCGCAGTTACACCGAAAA
65 TAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAAC
** *
5360013 AACACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAAAATTCCATAATAATC
130 AGTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATC
* * *
5360078 TACATCTCCCTCCAAATGATGATTTTCCCTGGAACTAGCATAACTTGTAGTTGAAAAAGAAACTA
195 TACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTA
* * *
5360143 CTACTCCACAA-TTTTGTGTCCTCCTTAATCTTTCACGAGATTTCATATGGATCCTAAACCCATT
260 CTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATT
* * *
5360207 AATGAGAAAGACATTATATATTTTAACAATTCTATTTGGACCTTGAGAAAGT-AATTTAACATCT
325 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAA-TCCATTTAACATCT
* * * *
5360271 TCACTAACTTCTCTTCCACTCCAAACCTATTACCCAAGGATGGTGAATTAATTTGAATTGATGTC
389 TCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTC
* * * *
5360336 GATACAGCTAATCACTTATTTTTCTCCTGGGCATG-T-TATGTAATAAAAAACAACAATTTTAGT
454 GATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAAAAAACAACAATTTTAGT
**
5360399 AAGAAAAGGGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
519 AAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
*
5360464 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCA
584 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
* * *
5360529 TCAACGTCCTCCC-AACCCATTAAAATTGTGTAGTGTTAGTGATAGTTTCATCTAAGTTTTGTGT
649 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* *
5360593 TACAAAAGGTAAAGATTTAGATCTTGTTTCAATGTCATCTCTACATCCATCCCCGATGTCTATCA
714 TACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCA
* *
5360658 AGTCTATGGGGTATTATAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAA
779 AGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAA
5360723 ACTTGTTTCACTTAAGAAGAA
844 ACTTGTTTCACTTAAGAAGAA
* * * *
5360744 AATACATATGACTCATTCATAAATCATTAACCAA-TGTGAATTAATCAATAGAAATTCACCATTG
1 AATACATATGACTCATTCATCAATCATTGA-CAAGTGTGAATTAATCGAGAGAAATTCACCATTG
* * *
5360808 TAAAATCGAATTTATCTCTTTTTATGCCTCGAATAGTGTTTACATCAGCCCAGTCACACTGAAAC
65 TAAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAAC
* * *
5360873 AGTACAACTTTTTGTTTTCCATAATAATTTAACTTAATAATGTCCGTAAGAATTCCATAATAATC
130 AGTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATC
*
5360938 TACATCTCCATCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTA
195 TACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTA
* * ** *
5361003 CTACTACACAATTTTTGAGTCCTCCTTAATCTTTCACTTGATTTCGTGTGGAACCTGAACCCATT
260 CTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATT
* **
5361068 AATGATAAATTCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATCTT
325 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATCTT
* * * *
5361133 CATTAACTTCTCTTCCACTCTAAACCTATTACACATGAATAGTGAATTAATTTGCTTTGATGTCG
390 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
* * *
5361198 ATACGGCAAATCACTTATTTTTCTCCTAGGCAAGATATATGTAATAACAAAACAACAATTTTAGT
455 ATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAA-AAAACAACAATTTTAGT
*
5361263 AAAAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
519 AAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * *
5361328 TAATACACATGGTTATAAAATTTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
584 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCA
* * *
5361393 TCAACGTCCTCCCGAATCCATTTAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTCGTGC
649 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* *
5361458 TACTAAAGGTAAAGATTCAGATCTTGTTTCAATGTCTTCTCTACTTCCATCCCTC-ATGTCTATC
714 TACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCC-CGATGTCTATC
* *
5361522 AAGTCTCTGGGGTATTACAGAGTACAACATACCAACCCTCATCCATTAGATTGTGACAGTAAAAA
778 AAGTCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAA
*
5361587 AACTTGTTTCACTTAAAAAGAA
843 AACTTGTTTCACTTAAGAAGAA
* * * *
5361609 AATTCATATGACTCATTTATCAATCATTGACCAGTGTGAATTATTCGAGAGAAATTCACCATTGT
1 AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCACCATTGT
* * * *
5361674 AAAA-TGAAATTGATCTATTTTTATGCCTCGAGTAATGTTTACATCAGCCCTA-TCACACCGAAA
66 AAAACCG-AATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCC-AGTCACACCGAAA
5361737 CAGTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
129 CAGTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
* * *
5361802 CTACATATCCCTGCAAATGATGATTGTCCCTGGAAATAGCATAACTTGTAGTTGAAGAAGTAACT
194 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
* ** * * *
5361867 ACTACTCCACAA-ATAAGTGTTCTCCTTAATCTTTCACGAGATTTTGTTTGGAACCTAAACCCAT
259 ACTACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCAT
* *
5361931 TAATGAG--AGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAACCCATTTAATATCT
324 TAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATCT
* * * *
5361994 TCACTAACTTATCTTCTACACCAAACCTATTACACACGAATGGTGAATTAATTTGCATTGATGTC
389 TCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTC
* * * *
5362059 GATACCGTAAATCACTTATTTTTCTCCTATGCATGATATCTCTAATAAGAAAACAACAATTTTAG
454 GATACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAA-AAAACAACAATTTTAG
* * *
5362124 TAAGAAAATAGTTTAATTAACGAATATATTGAATGACGACATGTTATAAGTTATAATATTTTAAA
518 TAAGAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
** ** * * *
5362189 TTAATGTATATGGATATAAAATCTTACTACATTAGTATATCTTATCAATTGTCATAAATATCTTC
583 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTC
* * * ** * * *
5362254 GTCAATGTCCTCCCAAAGTCATTGAAATTGTGTAGTATTAATGATAGTTTGAACTAAGTTTTGTG
648 ATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
* * * * *
5362319 CTACAAAATGTAAAAATTGAGATCATGTTTCAATGTCATCTCTACTTACATCCCCGATGTCTATC
713 CTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
5362384 AAG
778 AAG
5362387 AAGAAAATAC
Statistics
Matches: 4604, Mismatches: 457, Indels: 69
0.90 0.09 0.01
Matches are distributed among these distances:
860 320 0.07
861 598 0.13
862 837 0.18
863 435 0.09
864 918 0.20
865 1484 0.32
866 12 0.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (864 bp):
AATACATATGACTCATTCATCAATCATTGACAAGTGTGAATTAATCGAGAGAAATTCACCATTGT
AAAACCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAACA
GTACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAATCT
ACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACTAC
TACTCCACAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTAAACCCATTA
ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAATCCATTTAACATCTTC
ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
TACCGCAAATCACTTATTTTTCTCCTAGGCATGATATATATAATAAAAAACAACAATTTTAGTAA
GAAAATAGTTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATTA
ATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCTTCATC
AACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCTA
CAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAAG
TCTCTGGGGTATTACAGAGCACAACATACCAACCCTCATCCATTGGATTGTGACAGTAAAAAAAC
TTGTTTCACTTAAGAAGAA
Found at i:5364765 original size:866 final size:863
Alignment explanation
Indices: 5362887--5367698 Score: 7194
Period size: 864 Copynumber: 5.6 Consensus size: 863
5362877 TCTATTATAT
* * * ** *
5362887 AGCACAACTTACCAACCCTCATCCATTGAATTATGACTGTAAAAATGCTTGTTTCACTTAAGAAT
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
* * *
5362952 AAAATACATACGACTCATTCATCAATCGTTGACCAATGTGAATTAATCGAGAGAAATTAACCATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
*
5363017 GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACATCGAAA
131 GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAA
* * **
5363082 TAGCACAGCCTTTAATTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
196 CAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
* * *
5363147 CTACATCTCCCTCCGAATGATGATTGTCCCTTGAACTAGCATAACTTGTAGTTGAAGAAGAAACT
261 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
* *
5363212 ACTACTCCACAATTTTGTGTCATCCTTAATATTTCACGAGATTTCGTGTGGAACCTGAACCCATA
326 ACTACTCCACAATTTTGTGTC-TCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCATT
*
5363277 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGTCATTTAACATCTT
390 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTT
* *
5363342 CACTAACTTCTCTTCCACTCGAAACCTATTACACATGAATGGTGAATTAATTTACATTGATGTCG
455 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
* * * *
5363407 ATA-CTGCAAATCACTTATTTTTCCCCTAGGGATGATATATGTAATAAAAAAACAACAATTTTTG
520 ATATC-GCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAAAAAACAACAATTTTAG
* *
5363471 TAAGAAAACGGTTTAATAAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
584 TAAGAAAACGATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
* *
5363536 TTAATACATATGGATATAAAATCATACTACATTCTTATGTCATATCAATTTTCATAAATATCTTC
649 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
* *
5363601 ATCAACGTCCTCCC-AACCCATTGAAACTGTGTAGTGTTAGTGATAGTTTCATCTAAGTTTTGTG
714 ATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
*
5363665 CTACAAAAGGTAAAGTTTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
779 CTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATC
*
5363730 AAGTCTCTGGGGGTATTATAG
844 AAGTCTCT-GGGGTATTACAG
* *
5363751 AGCACAACATGCCAACCCTCATCCATTGGATTGTGACAGTAAAAAAACTTGTTTCACTTAAGAAG
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
* *
5363816 AAAATACATATGACTCATTCATCAATCATTGACCAGTGTGAATTAATCGATAGAAATTCACCATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
* * * *
5363881 GTAAAATCTAATTTATCTCTTTTTATGCCTCGA-AAGTGTTTACATCAACCCAGTCACACTGAAA
131 GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAA
* * * * * *
5363945 CAGCAAAACCTTTTGTTTTCCATAATAATTTAACTTCATAATGTTCGTAAGAATTACATAATAAT
196 CAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
* * *
5364010 CTACATCACCCTCCAAATGATGATTGTCCCTGGAACTAGCGTAACTTGTAGTTGAATAAGTAACT
261 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
* * *
5364075 ACTACTCCACAATTTTTGTGTCATCCTTAATCTTACACGAGATTTTGTGTGGAACGTGAACCCAT
326 ACTACTCCACAA-TTTTGTGTC-TCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCAT
*
5364140 TAATGTGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCT
389 TAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCT
*
5364205 TCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATAAATTTGCATTGATGTC
454 TCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTC
* *
5364270 GATATCGCAAATCACTTATTTTTCTCCTATGAATGATATATGTAATAACAAAACAACAATTTTAG
519 GATATCGCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAAAAAACAACAATTTTAG
*
5364335 TAAGAAAACGATTTAATTAATAAATATATATTGAATGACAACATGTTATAAGTTATAATATTATA
584 TAAGAAAACGATTTAATTAAT-GA-ATATATTGAATGACAACATGTTATAAGTTATAATATTATA
*
5364400 AATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTTTCATAAATATCT
647 AATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCT
*
5364465 TCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTACTGATAGTTTCATCTAAGTTTTG
712 TCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTG
*
5364530 TGCTACAAAAGGTAAAGATTCATATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTA
777 TGCTACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTA
*
5364595 TCAAGTCTCTGGGGTATTACAT
842 TCAAGTCTCTGGGGTATTACAG
*
5364617 AGCACAACATACCAACCCTCATCCATTGGATTATGACAATAAAAAAACTTGTTTCACTTAAGAAG
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
* * * * *
5364682 AAAAGACATATGACTCATTCATCAATCATTGACCAGTGTGAATTATTCAAGAGAAAATCACCATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
* * *
5364747 GTAAAATGGAATTTATCTCTTTTTATTCCTCGAGTAGTGTTTACATCAGCCTAGTCACACCGAAA
131 GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAA
* * * * *
5364812 CAGTACATCCTTTCGTTTTCCATAATAATCGATCTTAATAATGTCCGTAAGATTTCC------A-
196 CAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
* *
5364870 -TACATCTCCCTCCAAATGATGATTGTCCCTGGAAATAGCATAACTTGTAGTTGAAGATGTAACT
261 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
* *
5364934 ACTACTCCACAATTATGTGTTCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTGAACCCATT
326 ACTACTCCACAATTTTGTG-TCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCATT
5364999 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTT
390 AATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTT
*
5365064 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCTTTGATGTCG
455 CACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCG
* * *
5365129 ATATCGTAAATCACTTA-TTTTCACCTATGCATGATATATGTAATAAGAAAACAACAATTTTAGT
520 ATATCGCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAAAAAACAACAATTTTAGT
* * * *
5365193 AAGAAAACAATTTAATTAACGAATATATTGAATTACAACATGTTATAAGTTATAATATTTTAAAT
585 AAGAAAACGATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAAT
* * *
5365258 TAATACATATGGATATAAAATCTTACTACATTATTATGTCATATAAATTGTCATAAATATCTTCG
650 TAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCA
*
5365323 TCAACATCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
715 TCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGC
* * * * **
5365388 TACAAAAGAAAAGGTAAAGATTCATATTTTGTTTTAATGTCATCTCTACTTTCATCCATGATGTC
780 TAC-----AAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTC
* * *
5365453 TATCAAGCCTCTAGAGGTATTATAG
840 TATCAAGTCTCT-GGGGTATTACAG
* *
5365478 AGCACAACATACCAACCCTCATCCATTGGATTATGATAGTAAAAAAATTTGTTTCACTTAAGAAG
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
** *
5365543 AAAATACATATGACTCATTCATCAATCGTTGACTGGTGTGAATTAATCGAGAGAAATTCAACATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
*
5365608 GTAAAATCGAATTTATCT-TTTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAATCACACCGAA
131 GTAAAATCGAATTTATCTCTTTTT-ATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAA
* *
5365672 ACAGCACAACCTTTCAG-TTTCCATAATAATCTAACTTAATAATATCCGTAAGAATTTCATAATA
195 ACAGCACAACCTTTC-GTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATA
* * * * *
5365736 ATCTACATCTCCCTCCAAATAATGATTGTCTCTGGAAATAGCATAATTTATAGTTGAAGAAGTAA
259 ATCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAA
* *
5365801 CTACTACTCCACAATTTTGTGTTCTCCTTAATCTTTCACGAGATTTCATGTGGAACCTAAACCCA
324 CTACTACTCCACAATTTTGTG-TCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCA
*
5365866 TTAATAAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATC
388 TTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATC
* * * *
5365931 TTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATTGTGAATTATTTTACAGTGATGT
453 TTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGT
* * * *
5365996 CGATACCGCAAATCCCTTATTTTTCTCCTATGCATGATATTTGTAA-AAAGAAAACAATAATTTT
518 CGATATCGCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAA-AAAACAACAATTTT
* *
5366060 AGTAAGAAAACAGA-TTAATTAACGAATATATTGAATGACAACATGTTATAAGTTATAATATTTT
582 AGTAAGAAAAC-GATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTAT
* * * *
5366124 AAATTATTACATATGGATATAAAATCTTACTACAGTATTATGTCATATCAATTCTCATAAATATC
646 AAATTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATC
* *
5366189 TTCTTCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTATGTTTT
711 TTCATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTT
* * * * * *
5366254 GTGATTCAAAAGGTAAAGATTCA-AT-TTAGTTTCATTGTCATCTATACTTCCATCCCTGATGTA
776 GTGCTACAAAAGGTAAAGATTCAGATCTT-GTTTCAATGTCATCTCTACTTCCATCCCCGATGTC
*
5366317 TATTAAGTCTCATGGGGTATTACAG
840 TATCAAGTCTC-TGGGGTATTACAG
* * * * *
5366342 AGCACAACATACCAACCCACATCCATTGGATTGTGATAGTAAAAAACCTTGTTTCACTTAAAAAG
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
*
5366407 AAAATACATATGACTCATTCATCAATCGTTGATCAGTGTGAATTAATCGAGAGAAATTCACCATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
* ** *
5366472 GTAAAATCGAATTTATCTCTTTTCATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACATTGGAA
131 GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAA
* *
5366537 CTGCAAAACCTTTCG---T---T--T--TC---CTTAATAATGTCCGTAAGAATTCCATAATAAT
196 CAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
*
5366589 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTCGTTGAAGAAGTAACT
261 CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
* * * * *
5366654 ACTACTCCACAATTTATGTTTCCTCCTTAATCTTTCACAAAATTTTGTGTGGAACCTAAACCCAT
326 ACTACTCCACAATTT-TGTGT-CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCAT
* * *
5366719 TAATGAGAAAGGCTTTATATCTTTTAACAATTCTATTTGGACCTTTAGAAAGCCATTTAGCATCT
389 TAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCT
*
5366784 TCACTAACTTCTCTTCCACTCCAAACCTATTACATATGAATGGTGAATTAATTTG----GA---C
454 TCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTC
* * * ** * *
5366842 -CT-T----TAT-A--TCTTTTTCTCCTGGGCATGATATCTATAATAAAAAAACAACAATTTTAG
519 GATATCGCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAAAAAACAACAATTTTAG
* * * *
5366898 TAAGAAAATGGTTTAATTAATGAATATATTAAATGAAAACATGTTATAAGTTATAATATTATAAA
584 TAAGAAAACGATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAA
* *
5366963 TTAGTACATATTGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
649 TTAATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTC
* *
5367028 TTCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTT
714 ATCAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTG
* *
5367093 CTA-AAACAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCTCGATGCCTAT
779 CTACAAA-AGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTAT
* *
5367157 CAAGTCTATGGGGTTATTACAA
843 CAAGTCTCTGGGG-TATTACAG
*
5367179 AGCACAACATACCAACCCTTATCCATTGGATTATG--A-T-AAAAAACTTGTTTCACTTAAGAAG
1 AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
* * * *
5367240 AAAATGCATATGACTCATTCATCAATCGTTCACTAGTGTAAATTAATCGAGAGAAATTCACCATT
66 AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
* * * *
5367305 -TTAAATCCGAATTTATCTCTTTTTATACCTCGAGTAGTGTTTACATCATCCCCGTCACACCGAA
131 GTAAAAT-CGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAA
* *
5367369 ACAGCTCAACCTTTCGTTTTCCTTAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAA
195 ACAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAA
*
5367434 TCTACATCTCCCTCCAAATGATGATTGACCCT-GAACTAGCATAACTTGTAGTTGAAGAAGTAAC
260 TCTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAAC
*
5367498 TACTACTCCATAATTTTTGTGTCCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCA
325 TACTACTCCACAA-TTTTGTGT-CTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCA
* *
5367563 TTAATGAGTAAGGCATTATATATTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATC
388 TTAATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATC
* * *
5367628 TTCACTAACTTCTCTTCCACTCCAAACCTATTACAAATGAATGGTGAATTAATTTTCATTGATAT
453 TTCACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGT
5367693 CGATAT
518 CGATAT
5367699 AAAAAAACAA
Statistics
Matches: 3594, Mismatches: 293, Indels: 132
0.89 0.07 0.03
Matches are distributed among these distances:
832 5 0.00
833 145 0.04
834 1 0.00
835 5 0.00
836 239 0.07
837 82 0.02
838 2 0.00
839 3 0.00
841 1 0.00
843 2 0.00
844 1 0.00
845 201 0.06
846 65 0.02
848 2 0.00
849 2 0.00
851 105 0.03
852 155 0.04
853 1 0.00
854 3 0.00
855 168 0.05
856 2 0.00
857 62 0.02
858 189 0.05
859 73 0.02
860 68 0.02
861 233 0.06
862 1 0.00
863 157 0.04
864 636 0.18
865 23 0.01
866 282 0.08
867 192 0.05
869 262 0.07
870 225 0.06
871 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (863 bp):
AGCACAACATACCAACCCTCATCCATTGGATTATGACAGTAAAAAAACTTGTTTCACTTAAGAAG
AAAATACATATGACTCATTCATCAATCGTTGACCAGTGTGAATTAATCGAGAGAAATTCACCATT
GTAAAATCGAATTTATCTCTTTTTATGCCTCGAGTAGTGTTTACATCAGCCCAGTCACACCGAAA
CAGCACAACCTTTCGTTTTCCATAATAATCTAACTTAATAATGTCCGTAAGAATTCCATAATAAT
CTACATCTCCCTCCAAATGATGATTGTCCCTGGAACTAGCATAACTTGTAGTTGAAGAAGTAACT
ACTACTCCACAATTTTGTGTCTCCTTAATCTTTCACGAGATTTCGTGTGGAACCTGAACCCATTA
ATGAGAAAGGCATTATATCTTTTAACAATTCTATTTGGACCTTGAGAAAGCCATTTAACATCTTC
ACTAACTTCTCTTCCACTCCAAACCTATTACACATGAATGGTGAATTAATTTGCATTGATGTCGA
TATCGCAAATCACTTATTTTTCTCCTATGCATGATATATGTAATAAAAAAACAACAATTTTAGTA
AGAAAACGATTTAATTAATGAATATATTGAATGACAACATGTTATAAGTTATAATATTATAAATT
AATACATATGGATATAAAATCTTACTACATTCTTATGTCATATCAATTGTCATAAATATCTTCAT
CAACGTCCTCCCGAACCCATTGAAATTGTGTAGTATTAGTGATAGTTTCATCTAAGTTTTGTGCT
ACAAAAGGTAAAGATTCAGATCTTGTTTCAATGTCATCTCTACTTCCATCCCCGATGTCTATCAA
GTCTCTGGGGTATTACAG
Found at i:5373949 original size:40 final size:41
Alignment explanation
Indices: 5373905--5373983 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
5373895 ACCTATTGCA
* *
5373905 GCGTTTGTAAAAAA-CTCCGCTAAAGTACTAAACTTTTGTG
1 GCGTTTGGAAAAAAGCGCCGCTAAAGTACTAAACTTTTGTG
5373945 GCGTTTGGAAAAAAGCGCCGCTAAAGTACTAAACTTTTG
1 GCGTTTGGAAAAAAGCGCCGCTAAAGTACTAAACTTTTG
5373984 CGACGTTCGT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 13 0.36
41 23 0.64
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (41 bp):
GCGTTTGGAAAAAAGCGCCGCTAAAGTACTAAACTTTTGTG
Found at i:5376026 original size:32 final size:31
Alignment explanation
Indices: 5375959--5376064 Score: 86
Period size: 31 Copynumber: 3.4 Consensus size: 31
5375949 GGGCCTGAGA
* * * * * *
5375959 GCCTACCCAAGATAGATTTCAGGATCGTGGG
1 GCCTACCTAAGAAACATCTCAGGGTCGTAGG
*
5375990 GCCTACCTAAGAACACATCTTAGGGTCGTAGG
1 GCCTACCTAAGAA-ACATCTCAGGGTCGTAGG
** ** * *
5376022 GCCTACCCGAGAATGATCTCAGGGCCGTAGA
1 GCCTACCTAAGAAACATCTCAGGGTCGTAGG
5376053 GCCTACCTAAGA
1 GCCTACCTAAGA
5376065 GTCACATTAG
Statistics
Matches: 58, Mismatches: 16, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
31 34 0.59
32 24 0.41
ACGTcount: A:0.27, C:0.26, G:0.26, T:0.20
Consensus pattern (31 bp):
GCCTACCTAAGAAACATCTCAGGGTCGTAGG
Found at i:5376044 original size:63 final size:63
Alignment explanation
Indices: 5375941--5376064 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
5375931 CCCTAAGGGA
* * * *
5375941 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGATCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGACCGTAGAGCCTACCTAAGAAC
* * * *
5376004 ACATCTTAGGGTC-GTAGGGCCTACCCGAGA-ATGATCTCAGGGCCGTAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATCTCAGGACCGTAGAGCCTACCTAAGA
5376065 GTCACATTAG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.27, C:0.26, G:0.27, T:0.20
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATCTCAGGACCGTAGAGCCTACCTAAGAAC
Found at i:5376989 original size:29 final size:29
Alignment explanation
Indices: 5376950--5377083 Score: 177
Period size: 29 Copynumber: 4.7 Consensus size: 29
5376940 TCCACATTCG
*
5376950 AAAATTCCCAAAATGTCACTTTTTTCA-A
1 AAAATTCCCAGAATGTCACTTTTTTCACA
5376978 AATAATTCCCA-AATTGTCA-TTTTTTCAC-
1 AA-AATTCCCAGAA-TGTCACTTTTTTCACA
*
5377006 AAAATTCCCAGAATGTCACCTTTTTCACA
1 AAAATTCCCAGAATGTCACTTTTTTCACA
* * *
5377035 AAAATTCCCAGAATATCACCTTTTTCATA
1 AAAATTCCCAGAATGTCACTTTTTTCACA
5377064 AAAATTCCCAGAATGTCACT
1 AAAATTCCCAGAATGTCACT
5377084 GGGTCGGGTC
Statistics
Matches: 95, Mismatches: 5, Indels: 11
0.86 0.05 0.10
Matches are distributed among these distances:
27 13 0.14
28 24 0.25
29 58 0.61
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (29 bp):
AAAATTCCCAGAATGTCACTTTTTTCACA
Found at i:5377041 original size:56 final size:58
Alignment explanation
Indices: 5376950--5377082 Score: 175
Period size: 56 Copynumber: 2.3 Consensus size: 58
5376940 TCCACATTCG
* * * * *
5376950 AAAATTCCCAAAATGTCACTTTTTTCAAAATAATTCCCA-AATTGTCA-TTTTTTCA-C
1 AAAATTCCCAGAATGTCACCTTTTTCAAAATAATTCCCAGAA-TATCACCTTTTTCATA
5377006 AAAATTCCCAGAATGTCACCTTTTTCACAAA-AATTCCCAGAATATCACCTTTTTCATA
1 AAAATTCCCAGAATGTCACCTTTTTCA-AAATAATTCCCAGAATATCACCTTTTTCATA
5377064 AAAATTCCCAGAATGTCAC
1 AAAATTCCCAGAATGTCAC
5377083 TGGGTCGGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
56 37 0.54
57 12 0.18
58 19 0.28
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (58 bp):
AAAATTCCCAGAATGTCACCTTTTTCAAAATAATTCCCAGAATATCACCTTTTTCATA
Found at i:5377157 original size:19 final size:19
Alignment explanation
Indices: 5377109--5377165 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
5377099 ACGGGTCGGG
* *
5377109 TCAGACCGGTCAACCCGAT
1 TCAGACCGGTCAAACCGGT
*
5377128 TC-GAACAGGTCAAACCGGT
1 TCAG-ACCGGTCAAACCGGT
*
5377147 TCAGACCGGTCAAGCCGGT
1 TCAGACCGGTCAAACCGGT
5377166 CAACATGAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
18 1 0.03
19 29 0.94
20 1 0.03
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:5383547 original size:16 final size:17
Alignment explanation
Indices: 5383515--5383547 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5383505 TGGAGTCTTT
5383515 ATTAAAGCATATAGTTC
1 ATTAAAGCATATAGTTC
*
5383532 ATTAAGGCAT-TAGTTC
1 ATTAAAGCATATAGTTC
5383548 CTTTAAGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (17 bp):
ATTAAAGCATATAGTTC
Found at i:5385111 original size:56 final size:56
Alignment explanation
Indices: 5385025--5385137 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
5385015 AAACTTTTAA
5385025 ATATTGTTTTAATGTTCAAAACACTTGAAATTAGCCAAAAATTATTTCCAGTCTCG
1 ATATTGTTTTAATGTTCAAAACACTTGAAATTAGCCAAAAATTATTTCCAGTCTCG
5385081 ATATTGTTTTAATGTTCAAAACACTTGAAATTAGCCAAAAATTATTTCCAGTCTCG
1 ATATTGTTTTAATGTTCAAAACACTTGAAATTAGCCAAAAATTATTTCCAGTCTCG
5385137 A
1 A
5385138 GACCAGCATG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (56 bp):
ATATTGTTTTAATGTTCAAAACACTTGAAATTAGCCAAAAATTATTTCCAGTCTCG
Done.