Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009624.1 Hibiscus syriacus cultivar Beakdansim tig00117016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8249038
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 38
Found at i:7714971 original size:295 final size:295
Alignment explanation
Indices: 7714441--7715029 Score: 1151
Period size: 295 Copynumber: 2.0 Consensus size: 295
7714431 CAATGAACTA
7714441 CATTTAATTCATAGGAATTTTACCTTCCATACCCAATTAAAATATGGGAAAAGAACCAAACAATC
1 CATTTAATTCATAGGAATTTTACCTTCCATACCCAATTAAAATATGGGAAAAGAACCAAACAATC
7714506 AAATAAGCCATAGACTACCAATGGAAATTAAACTTTGTTGATAGGGACAGTTCTTTCACCAGTGA
66 AAATAAGCCATAGACTACCAATGGAAATTAAACTTTGTTGATAGGGACAGTTCTTTCACCAGTGA
7714571 AATCTCCTAGTAAATTCTTATTTTAAGGAACAAGTTTTAATCAAACAACAAAAAGAAAATGGTTA
131 AATCTCCTAGTAAATTCTTATTTTAAGGAACAAGTTTTAATCAAACAACAAAAAGAAAATGGTTA
* *
7714636 AAAAATGTCATCCTAGTCTCAAATGAAATGTCTTATAATCGATTTTGCTTTAAGTAAAACAAAAA
196 AAAAATATCATCCTAGTCTCAAATGAAATGTCTTATAATCGACTTTGCTTTAAGTAAAACAAAAA
7714701 AATGTTTTTCTTACTAGCAAACTATTCTTTCCTTC
261 AATGTTTTTCTTACTAGCAAACTATTCTTTCCTTC
*
7714736 CATTTAATTCATAGGAATTTTACCTTCCATATCCAATTAAAATATGGGAAAAGAACCAAACAATC
1 CATTTAATTCATAGGAATTTTACCTTCCATACCCAATTAAAATATGGGAAAAGAACCAAACAATC
7714801 AAATAAGCCATAGACTACCAATGGAAATTAAACTTTGTTGATAGGGACAGTTCTTTCACCAGTGA
66 AAATAAGCCATAGACTACCAATGGAAATTAAACTTTGTTGATAGGGACAGTTCTTTCACCAGTGA
7714866 AATCTCCTAGTAAATTCTTATTTTAAGGAACAAGTTTTAATCAAACAACAAAAAGAAAATGGTTA
131 AATCTCCTAGTAAATTCTTATTTTAAGGAACAAGTTTTAATCAAACAACAAAAAGAAAATGGTTA
7714931 AAAAATATCATCCTAGTCTCAAATGAAATGTCTTATAATCGACTTTGCTTTAAGTAAAACAAAAA
196 AAAAATATCATCCTAGTCTCAAATGAAATGTCTTATAATCGACTTTGCTTTAAGTAAAACAAAAA
7714996 AATGTTTTTCTTACTAGCAAACTATTCTTTCCTT
261 AATGTTTTTCTTACTAGCAAACTATTCTTTCCTT
7715030 TCGAACACCG
Statistics
Matches: 291, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
295 291 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (295 bp):
CATTTAATTCATAGGAATTTTACCTTCCATACCCAATTAAAATATGGGAAAAGAACCAAACAATC
AAATAAGCCATAGACTACCAATGGAAATTAAACTTTGTTGATAGGGACAGTTCTTTCACCAGTGA
AATCTCCTAGTAAATTCTTATTTTAAGGAACAAGTTTTAATCAAACAACAAAAAGAAAATGGTTA
AAAAATATCATCCTAGTCTCAAATGAAATGTCTTATAATCGACTTTGCTTTAAGTAAAACAAAAA
AATGTTTTTCTTACTAGCAAACTATTCTTTCCTTC
Found at i:7717787 original size:35 final size:35
Alignment explanation
Indices: 7717741--7717852 Score: 145
Period size: 35 Copynumber: 3.2 Consensus size: 35
7717731 AAAATATTCC
*
7717741 TCAATTTCATTCTAAACCCCAAATTTCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTTCAAAATAAT
* *
7717776 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTTCAAAATAAT
* * * *
7717811 TTAATTACATTCTAAAACCCAAA-TTCTAAAATATT
1 TCAATTTCATTCTAAACCCCAAATTTC-AAAATAAT
7717846 TCAATTT
1 TCAATTT
7717853 AAGGAGGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
34 2 0.03
35 63 0.97
ACGTcount: A:0.42, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTTCAAAATAAT
Found at i:7718955 original size:35 final size:34
Alignment explanation
Indices: 7718906--7719018 Score: 154
Period size: 35 Copynumber: 3.2 Consensus size: 34
7718896 AAAAAAGACA
* *
7718906 GAAATTGAAGTATTTTAGAATTTGGGTTTTAGAAT
1 GAAATTGAATTATTTTGGAATTTGGG-TTTAGAAT
*
7718941 GTAATTGAATTATTTTGGAATTTAGGGTTTAGAAT
1 GAAATTGAATTATTTTGGAATTT-GGGTTTAGAAT
* *
7718976 AAAATTGAATTACTTTGGAATTTGTGGTTTAGAAT
1 GAAATTGAATTATTTTGGAATTTG-GGTTTAGAAT
7719011 GAAATTGA
1 GAAATTGA
7719019 GGATTGTTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
34 1 0.01
35 65 0.94
36 3 0.04
ACGTcount: A:0.35, C:0.01, G:0.22, T:0.42
Consensus pattern (34 bp):
GAAATTGAATTATTTTGGAATTTGGGTTTAGAAT
Found at i:7720840 original size:12 final size:12
Alignment explanation
Indices: 7720825--7720855 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7720815 TCAAAAAAAT
7720825 AAAAAAAAAGGC
1 AAAAAAAAAGGC
*
7720837 AAAAAAAAAGTC
1 AAAAAAAAAGGC
7720849 AAAAAAA
1 AAAAAAA
7720856 CAAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.81, C:0.06, G:0.10, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAGGC
Found at i:7720879 original size:20 final size:20
Alignment explanation
Indices: 7720828--7720880 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
7720818 AAAAAATAAA
* *
7720828 AAAAAAGGCAAAAAAAAAGTC
1 AAAAAA-GCCAAAAAAAAGCC
*
7720849 AAAAAA-ACAAAAAAAAGCC
1 AAAAAAGCCAAAAAAAAGCC
7720868 AAAAAAGCCAAAA
1 AAAAAAGCCAAAA
7720881 TTTCAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 16 0.59
20 5 0.19
21 6 0.22
ACGTcount: A:0.75, C:0.13, G:0.09, T:0.02
Consensus pattern (20 bp):
AAAAAAGCCAAAAAAAAGCC
Found at i:7736054 original size:13 final size:13
Alignment explanation
Indices: 7736036--7736060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7736026 ATACCTTATA
7736036 ATTATTACATGTT
1 ATTATTACATGTT
7736049 ATTATTACATGT
1 ATTATTACATGT
7736061 GTTGCTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
ATTATTACATGTT
Found at i:7737628 original size:23 final size:25
Alignment explanation
Indices: 7737602--7737647 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
7737592 ACAAATTATA
*
7737602 TAAAAAAACTAA-TT-AAATAAAAC
1 TAAAAAAACAAATTTAAAATAAAAC
*
7737625 TAAAATAACAAATTTAAAATAAA
1 TAAAAAAACAAATTTAAAATAAA
7737648 CAATAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.53
24 2 0.11
25 7 0.37
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.24
Consensus pattern (25 bp):
TAAAAAAACAAATTTAAAATAAAAC
Found at i:7739384 original size:21 final size:21
Alignment explanation
Indices: 7739358--7739401 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7739348 ATGGCTAGGA
7739358 TTAGGT-TCGGGTCAGGTTTGG
1 TTAGGTCT-GGGTCAGGTTTGG
* *
7739379 TTAGGTCTGGTTCGGGTTTGG
1 TTAGGTCTGGGTCAGGTTTGG
7739400 TT
1 TT
7739402 TAGACTTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.07, C:0.09, G:0.41, T:0.43
Consensus pattern (21 bp):
TTAGGTCTGGGTCAGGTTTGG
Found at i:7739734 original size:95 final size:95
Alignment explanation
Indices: 7739571--7740447 Score: 1096
Period size: 95 Copynumber: 9.2 Consensus size: 95
7739561 TAAACTGTGG
* * * ** * * *
7739571 GTTCTTCTCGTTACGAAATCTCTACTGGAAATGTTGGTCTTTTGAGTGAGGTGTCGCTGATTCAA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
* * *
7739636 AATGCCTTAAATCGAGCAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * *
7739666 GTTCTTCTCATTATGAATTATCTACTAGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTTGA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
* * *
7739731 AATGCCATGAATCGAGTAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * *
7739761 GTTCCTT-TCATTATGAATTCTCTACTGGAAATGTTGGTCCATCGAGTGAGACGTCGCTGATTCA
1 GTT-CTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCG
* * *
7739825 AAATGACGTCAATCAAGCAAAGGTTGAACAA
65 AAATGTCGTGAATCGAGCAAAGGTTGAACAA
*
7739856 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCAT-GAGTGAGGCGTTGCTGATTCG
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCC-TCGAGTGAGGCGTCGCTGATTCG
* * *
7739920 AAATG-CTGTGAATTGAGAAAAGTTTGAACAA
65 AAATGTC-GTGAATCGAGCAAAGGTTGAACAA
* ** * * * *
7739951 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGTTCTGTCGAGTGAGGCATCCCTAATTCAA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
*
7740016 AATTTCGTGAATCGAGCAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * * * * *
7740046 GTTCTTCTCATCATGAATTCTCTATTGGAAATGTTGGTCCCTCGAGTGATGTGTTGCTGATTCAA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
*
7740111 AATGGCGTGAATCGAGCAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * * * ** * *
7740141 GTTATTCTCATTATGAATTCACTACTGGAAATGTTAGTCCCTCTAGTGAGGAATCACTAATTCGA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
7740206 AATGTCGTGAATCGAGCAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * * * *
7740236 GTTCTTCTCATTATGATTTCTCTATTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGTTAATTTGA
1 GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
* * *
7740301 ATTGTAGTGAATCGAGAAAAGGTTGAACAA
66 AATGTCGTGAATCGAGCAAAGGTTGAACAA
* * *
7740331 GTTCTTCTCATTATG-ATTACTCTACTGGAAATATTGGTCCCTCGAGTGAGGTGTCACTGATTCG
1 GTTCTTCTCATTATGAATT-CTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCG
* *
7740395 AAATGTTGTGAATCGAGCAAAGTTTGAACAA
65 AAATGTCGTGAATCGAGCAAAGGTTGAACAA
* *
7740426 GTTCTTCTTATTACGAACTTCT
1 GTTCTTCTCATTATGAA-TTCT
7740448 TTTCCCTCTA
Statistics
Matches: 672, Mismatches: 101, Indels: 17
0.85 0.13 0.02
Matches are distributed among these distances:
94 7 0.01
95 655 0.97
96 8 0.01
97 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (95 bp):
GTTCTTCTCATTATGAATTCTCTACTGGAAATGTTGGTCCCTCGAGTGAGGCGTCGCTGATTCGA
AATGTCGTGAATCGAGCAAAGGTTGAACAA
Found at i:7741046 original size:62 final size:62
Alignment explanation
Indices: 7740949--7741087 Score: 269
Period size: 62 Copynumber: 2.2 Consensus size: 62
7740939 TTACTAAGTA
*
7740949 AGAAACTTTGGAAATTATTTTCTTACTTTTAAAAAATTCAATTTTCAGAAAAGATTTAAATG
1 AGAAACTTTGGAAATTATTTTCTTACTTTTAAAAAAATCAATTTTCAGAAAAGATTTAAATG
7741011 AGAAACTTTGGAAATTATTTTCTTACTTTTAAAAAAATCAATTTTCAGAAAAGATTTAAATG
1 AGAAACTTTGGAAATTATTTTCTTACTTTTAAAAAAATCAATTTTCAGAAAAGATTTAAATG
7741073 AGAAACTTTGGAAAT
1 AGAAACTTTGGAAAT
7741088 CACTTTCCCA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
62 76 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (62 bp):
AGAAACTTTGGAAATTATTTTCTTACTTTTAAAAAAATCAATTTTCAGAAAAGATTTAAATG
Found at i:7741362 original size:57 final size:54
Alignment explanation
Indices: 7741301--7741460 Score: 162
Period size: 57 Copynumber: 2.9 Consensus size: 54
7741291 GTTTACAATT
* * *
7741301 ATCATCAAGAAGCCACTAAAAATTATGTTTAGCTTCTTTAAAAATTCATTGGAAATA
1 ATCATCAAGAAACCCCTAAAAATTA-GCTTAGCTTCTTTAAAAATTCATTGG-AA-A
* * * * * * *
7741358 ATCATCAAGAAACCCCTAATAATCGAGGTTAGATTTTTTCAAAATTCATTTGAAA
1 ATCATCAAGAAACCCCTAAAAAT-TAGCTTAGCTTCTTTAAAAATTCATTGGAAA
*
7741413 A-CATTAAGAAACCCCTAAAAATTAGGCTTAGCTTC-TTAAAAATTCATT
1 ATCATCAAGAAACCCCTAAAAATTA-GCTTAGCTTCTTTAAAAATTCATT
7741461 TGAATACATC
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
53 13 0.15
54 26 0.31
55 2 0.02
56 2 0.02
57 41 0.48
58 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (54 bp):
ATCATCAAGAAACCCCTAAAAATTAGCTTAGCTTCTTTAAAAATTCATTGGAAA
Found at i:7743057 original size:81 final size:80
Alignment explanation
Indices: 7742963--7744753 Score: 2364
Period size: 81 Copynumber: 22.1 Consensus size: 80
7742953 AAGCATTTTG
* * * * * * *
7742963 TCTTTTACCCAAAGGCATTTATCCTTTCATCTAACTTGCATGATTAACACTTTCCTTCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACTTT-CTGCCAAATGC
*
7743028 ATAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
7743044 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTAACACTTTTCTGCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
7743109 ACAGCTAGGACATTAT
65 ACAGCTAGGCCATTAA
* *
7743125 TCTTTTACTCAAAGGTATTTAACCTTTCATTTAACTGCCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* *
7743190 ATAACTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * ** * *
7743206 TATTTTACTCAAAGGTATTTAACCATTAATCTAACCAGCGTAATTGACATCTTTCTGCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
7743271 ACAGCTAGACGATTAA
65 ACAGCTAGGCCATTAA
* * * * * *
7743287 TTTTTTACTCAAAGGTATTTAACCTTTCATATGATTGACATAATTAACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
7743352 ATAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
7743368 TCTTTTACTCAAAGGTATTTAACATTTCATCTAACT-TCTATAATTGAAACCTTTCTACCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGC-ATAATTGACA-CTTTCTGCCAAATG
* *
7743432 CACAACTAGTCCATTAA
64 CACAGCTAGGCCATTAA
* * **
7743449 TATTTTACTCAAAGGTATCTAACCTTTCATCTAACTACCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
7743514 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
7743530 TCTTTTACTTAAAGGTATTTAACCTTTCATCTAACTGACATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
* * *
7743595 ACAACAAGGACATTAA
65 ACAGCTAGGCCATTAA
* * *
7743611 TATTTTACTCAAAGGTATTTAACCTTTCATCTAACAGGCATAATTGACACATTTCTGCCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
7743676 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * * * * **
7743692 TCTTTTAATCAAAGGCATTTAACCTTTCATCTTACTGGTATAATTGACACATTTCAGACAAATAT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7743757 ATAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
7743773 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7743838 ATAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* *
7743854 TCTTTTACTCAAAGGTATTTAACCCTTCATCTAACTGGCATAATTGAGACTTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7743919 ACATCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
7743935 TATTTTACTCAAATGTATTTAATCTTTCATCTAACTGCCATAATTGACACCTTT-TAGCCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCT-GCCAAATG
*
7743999 CACAACTAGGCCATTAA
64 CACAGCTAGGCCATTAA
* * *
7744016 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAAGTGGCATAATTGACACTTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7744081 A-TGACTAGGCCATTAA
65 ACAG-CTAGGCCATTAA
* * * * * *
7744097 TATTTTTCTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTAACACTTTTCTGCCATATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7744162 ACAACTAGGCCATTAA
65 ACAGCTAGGCCATTAA
** * * *
7744178 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTACCACAATTGACATATTTCTTCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
7744243 ACATCTAGGCCAATAA
65 ACAGCTAGGCCATTAA
* * *
7744259 TCTTTTACTCAAAGATATTTAACCTTTCATCTAACTGACATAATGGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
7744324 AAAACTAGGCCATTAA
65 ACAGCTAGGCCATTAA
7744340 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAC-TTTCTGCCAAATGC
*
7744405 ATAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * * *
7744421 TATTTTACTCAAAGGTATTTAACCTTTCATATAACTGGCTTAAGTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
7744486 ACAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
7744502 TCTTTTACTCAAAGGTATTTACCCTTTCATTTAATTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
* *
7744567 ACAACTAAGCCATTAA
65 ACAGCTAGGCCATTAA
*
7744583 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTTTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA-CTTTCTGCCAAATGC
*
7744648 AAAGCTAGGCCATTAA
65 ACAGCTAGGCCATTAA
* * *
7744664 TCTTTTACTCAAAGATATTTAACCTTTCATCTAACTAGCATAATTGACAACTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGAC-ACTTTCTGCCAAATGC
*
7744729 ACAGCTAGGCCATTAC
65 ACAGCTAGGCCATTAA
*
7744745 CCTTTTACT
1 TCTTTTACT
7744754 TTAAACATGT
Statistics
Matches: 1506, Mismatches: 189, Indels: 30
0.87 0.11 0.02
Matches are distributed among these distances:
80 5 0.00
81 1492 0.99
82 9 0.01
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (80 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACTTTCTGCCAAATGCA
CAGCTAGGCCATTAA
Found at i:7757565 original size:81 final size:81
Alignment explanation
Indices: 7757452--7758593 Score: 1493
Period size: 81 Copynumber: 14.1 Consensus size: 81
7757442 AAGCATTTCG
* ** * * * *
7757452 TCTTTTACCCAAAGACATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTCCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* * *
7757517 ATAACTAGGACATTAA
66 ACAGCTAGGCCATTAA
* * * *
7757533 TATTTTACTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTGACACCTTTCTTCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7757598 GCAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
7757614 TATTTTACTCAAAGGTATTTAACATTTAATCTAACTGGCATAATTGACACATTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
7757679 ACAACTAAGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * * *
7757695 TATTTTACTCAAAGGTATTTATCATGTCATCTATCTGGCATAATTGGA-ACCTTTTTGCCAAAAG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATT-GACACCTTTCTGCCAAATG
*
7757759 CACAGCTAGTCCATTAA
65 CACAGCTAGGCCATTAA
* * * *
7757776 TCTTTTACTCAAAGGTATTTAATCGTTCATCTAACTAGCATAACTGGA-ACCTTTCTGCCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAA-TTGACACCTTTCTGCCAAATG
7757840 CACAGCTA-GCCAATTAA
65 CACAGCTAGGCC-ATTAA
* *
7757857 TCTTTTACTCAAAGGTATTTAACC-TTCATCTAACTGGCATAATGGAAACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7757921 ACAGCTAGGCCATTAC
66 ACAGCTAGGCCATTAA
* * * *
7757937 TCTTTTACTCAAAGGTATTTAACCTTTCACCTAATTGGTATAATTGACACCTTTCTGCCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7758002 ATAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * **
7758018 TCTTTTACTGAAATGTATTTAACCTTTCATCTATCTGGCATAATTGACACCTTTCAACCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
7758083 ACAGCAAGGTCATTAA
66 ACAGCTAGGCCATTAA
* *
7758099 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTTATGCCAGATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACC-TTTCTGCCAAATG
* *
7758164 CAAAGTTAGGCCATTAA
65 CACAGCTAGGCCATTAA
** * *** * *
7758181 TCTTTTACTCAATTGTATTTAACCTTTCATCTAAGTGTTGTAATGGACACCTTTCTGCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
* *
7758246 ACAACTATGCCATTAA
66 ACAGCTAGGCCATTAA
* * * * * *
7758262 GCTTTTACTAAAAGGTATTTCACCTTTCATCTAATTGGAATAATTGACACCTTTCTTCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7758327 ACAGCTAGGCCAATAA
66 ACAGCTAGGCCATTAA
**
7758343 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACATATTTCTGCC-AATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7758407 ACACCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * * *
7758423 TATTTTACTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTGATACCTTTATGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
7758488 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
7758504 TCTTTTACTCAAAGATATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
*
7758569 ACAACTAGGCCATTAA
66 ACAGCTAGGCCATTAA
7758585 TCTTTTACT
1 TCTTTTACT
7758594 TTAAAACTGT
Statistics
Matches: 920, Mismatches: 133, Indels: 16
0.86 0.12 0.01
Matches are distributed among these distances:
79 4 0.00
80 143 0.16
81 704 0.77
82 69 0.08
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
ACAGCTAGGCCATTAA
Found at i:7758019 original size:242 final size:243
Alignment explanation
Indices: 7757452--7758593 Score: 1454
Period size: 242 Copynumber: 4.7 Consensus size: 243
7757442 AAGCATTTCG
* ** * * * *
7757452 TCTTTTACCCAAAGACATTTAGCCTTTCATCTAACTT-GCATGATTGACACCTTCCTGCCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAA-TTGGCATAATTGACACCTTTCTGCCAAATA
* * * * *
7757516 CATAACTAGGACATTAATATTTTACTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTGAC
65 CACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGAC
* ** * * *
7757581 ACCTTTCTTCCAAATGTGCAGCTAGGCCATTAATATTTTACTCAAAGGTATTTAACATTTAATCT
130 ACCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCT
* *
7757646 AACTGGCATAATTGACACATTTCTGCCAAATGCACAACTAAGCCATTAA
195 AACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
* * * * *
7757695 TATTTTACTCAAAGGTATTTATCATGTCATCT-ATCTGGCATAATTGGA-ACCTTTTTGCCAAA-
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAAT-TGGCATAATT-GACACCTTTCTGCCAAAT
* * * * *
7757757 AGCACAGCTAGTCCATTAATCTTTTACTCAAAGGTATTTAATCGTTCATCTAACTAGCATAACTG
64 A-CACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAA-TT
7757822 GA-ACCTTTCTGCCAAATGCACAGCTA-GCCAATTAATCTTTTACTCAAAGGTATTTAACC-TTC
127 GACACCTTTCTGCCAAATGCACAGCTAGGCC-ATTAATCTTTTACTCAAAGGTATTTAACCTTTC
* * * *
7757884 ATCTAACTGGCATAATGGAAACCTTTCTGCCAAATGCACAGCTAGGCCATTAC
191 ATCTAACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
* *
7757937 TCTTTTACTCAAAGGTATTTAACCTTTCACCTAATTGGTATAATTGACACCTTTCTGCCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACACCTTTCTGCCAAATAC
* * * *
7758002 ATAGCTAGGCCATTAATCTTTTACTGAAATGTATTTAACCTTTCATCTATCTGGCATAATTGACA
66 ACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA
** * *
7758067 CCTTTCAACCAAATGCACAGCAAGGTCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTA
131 CCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTA
* * * * *
7758132 ACTGGCATAATTGACACCTTTTATGCCAGATGCAAAGTTAGGCCATTAA
196 ACTGGCATAATTGACA-CATTTCTGCCAAATGCACAGCTAGGCCATTAA
** * *** * **
7758181 TCTTTTACTCAATTGTATTTAACCTTTCATCTAAGTGTTGTAATGGACACCTTTCTGCCAAATGT
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACACCTTTCTGCCAAATAC
* * * * * * *
7758246 ACAACTATGCCATTAAGCTTTTACTAAAAGGTATTTCACCTTTCATCTAATTGGAATAATTGACA
66 ACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA
* *
7758311 CCTTTCTTCCAAATGCACAGCTAGGCCAATAATCTTTTACTCAAAGGTATTTAACCTTTCATCTA
131 CCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTA
* *
7758376 ACTGGCATAATTGACATATTTCTGCC-AATGCACACCTAGGCCATTAA
196 ACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
* * * * * *
7758423 TATTTTACTCAAAGGTATTTAATCTTTCATCTAACTGGCATAATTGATACCTTTATGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACACCTTTCTGCCAAATAC
*
7758488 ACAGCTAGGCCATTAATCTTTTACTCAAAGATATTTAACCTTTCATCTAACTGGCATAATTGACA
66 ACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA
* * *
7758553 CCTTTTTGTCAAATGCACAACTAGGCCATTAATCTTTTACT
131 CCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACT
7758594 TTAAAACTGT
Statistics
Matches: 771, Mismatches: 115, Indels: 27
0.84 0.13 0.03
Matches are distributed among these distances:
241 6 0.01
242 368 0.48
243 179 0.23
244 218 0.28
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (243 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACACCTTTCTGCCAAATAC
ACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACA
CCTTTCTGCCAAATGCACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTA
ACTGGCATAATTGACACATTTCTGCCAAATGCACAGCTAGGCCATTAA
Found at i:7761050 original size:24 final size:23
Alignment explanation
Indices: 7761018--7761071 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
7761008 CTTTCTTCTT
*
7761018 TCTCACTTTTTACTTTCTTTTCC
1 TCTCTCTTTTTACTTTCTTTTCC
* *
7761041 -CTCTCTCTTTTGCTTTCTTTTTC
1 TCTCTCT-TTTTACTTTCTTTTCC
7761064 TCTCTCTT
1 TCTCTCTT
7761072 CTTCTTTTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 5 0.19
23 15 0.58
24 6 0.23
ACGTcount: A:0.04, C:0.31, G:0.02, T:0.63
Consensus pattern (23 bp):
TCTCTCTTTTTACTTTCTTTTCC
Found at i:7761069 original size:22 final size:21
Alignment explanation
Indices: 7761004--7761078 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 21
7760994 ATTTGATATG
*
7761004 TTTTCTTTCTTCTTTCTCACT-
1 TTTTCTTTCTT-TTTCTCTCTC
*
7761025 TTTTACTTTCTTTTCCCTCTCTC
1 TTTT-CTTTCTTTT-TCTCTCTC
7761048 TTTTGCTTTCTTTTTCTCTCTC
1 TTTT-CTTTCTTTTTCTCTCTC
7761070 TTCTTCTTT
1 TT-TTCTTT
7761079 TCCTTATTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 6 0.13
22 25 0.54
23 15 0.33
ACGTcount: A:0.03, C:0.29, G:0.01, T:0.67
Consensus pattern (21 bp):
TTTTCTTTCTTTTTCTCTCTC
Found at i:7761088 original size:24 final size:22
Alignment explanation
Indices: 7761041--7761090 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
7761031 TTTCTTTTCC
*
7761041 CTCTCTCTTTTGCTTTCTTTTT
1 CTCTCTCTTTTGCTTTCTTATT
7761063 CTCTCTCTTCTT-CTTTTCCTTATT
1 CTCTCTCTT-TTGC-TTT-CTTATT
7761087 CTCT
1 CTCT
7761091 TATTTTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 10 0.42
23 5 0.21
24 9 0.38
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.64
Consensus pattern (22 bp):
CTCTCTCTTTTGCTTTCTTATT
Found at i:7761091 original size:20 final size:20
Alignment explanation
Indices: 7761066--7761103 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7761056 TCTTTTTCTC
*
7761066 TCTCTTCTTCTTTTCCTTAT
1 TCTCTTATTCTTTTCCTTAT
*
7761086 TCTCTTATTTTTTTCCTT
1 TCTCTTATTCTTTTCCTT
7761104 TTTTTATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.68
Consensus pattern (20 bp):
TCTCTTATTCTTTTCCTTAT
Found at i:7763015 original size:28 final size:29
Alignment explanation
Indices: 7762959--7763022 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
7762949 ACAACAAAGC
7762959 AGAAGACAAGACAAAATGAAATCAAGTTAGT
1 AGAA-ACAAGACAAAA-GAAATCAAGTTAGT
7762990 AGAAACAAGACAAAA-AAATCAAGTTAGT
1 AGAAACAAGACAAAAGAAATCAAGTTAGT
*
7763018 TGAAA
1 AGAAA
7763023 TGATTAATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 17 0.53
30 11 0.34
31 4 0.12
ACGTcount: A:0.58, C:0.09, G:0.17, T:0.16
Consensus pattern (29 bp):
AGAAACAAGACAAAAGAAATCAAGTTAGT
Found at i:7765373 original size:22 final size:23
Alignment explanation
Indices: 7765345--7765388 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
7765335 ATGCTGGTGA
7765345 CTAAATTGAAATAAA-AAAATGC
1 CTAAATTGAAATAAATAAAATGC
7765367 CTAAATTGAAATAAATAAAATG
1 CTAAATTGAAATAAATAAAATG
7765389 TAAATAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (23 bp):
CTAAATTGAAATAAATAAAATGC
Found at i:7766638 original size:21 final size:21
Alignment explanation
Indices: 7766612--7766657 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7766602 ATAGGGCTAG
*
7766612 GGTTAGGTCC-GAGTCGAGTTT
1 GGTTAGGTCCAG-GTCGAGTCT
7766633 GGTTAGGTCCAGGTCGAGTCT
1 GGTTAGGTCCAGGTCGAGTCT
7766654 GGTT
1 GGTT
7766658 TGGGCCTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.13, C:0.15, G:0.39, T:0.33
Consensus pattern (21 bp):
GGTTAGGTCCAGGTCGAGTCT
Found at i:7766681 original size:22 final size:23
Alignment explanation
Indices: 7766653--7766704 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7766643 AGGTCGAGTC
*
7766653 TGGTTTGGGCCTG-GTTCGGGTT
1 TGGTTTGGGCCTGTCTTCGGGTT
* *
7766675 TGGTTTGGGTCTGTCTTGGGGTT
1 TGGTTTGGGCCTGTCTTCGGGTT
7766698 TGGTTTG
1 TGGTTTG
7766705 ATTTGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.00, C:0.10, G:0.44, T:0.46
Consensus pattern (23 bp):
TGGTTTGGGCCTGTCTTCGGGTT
Found at i:7767653 original size:2 final size:2
Alignment explanation
Indices: 7767646--7767670 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7767636 CACCTCTCGC
7767646 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7767671 TATCGGCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7768608 original size:6 final size:6
Alignment explanation
Indices: 7768597--7768622 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7768587 ATAAGTCTTT
7768597 ATTATA ATTATA ATTATA ATTATA AT
1 ATTATA ATTATA ATTATA ATTATA AT
7768623 ATGATAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTATA
Found at i:7782713 original size:55 final size:55
Alignment explanation
Indices: 7782521--7783143 Score: 792
Period size: 55 Copynumber: 11.3 Consensus size: 55
7782511 TTCTTTGAGG
* * * * *
7782521 TGCACACATAGTGTCGATATGGTCGTTCATAAATATATTATGAATTTCATGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* * *
7782576 TGCACACTTACAT--CTATACGGTCGTTCATAAACATATTATGAATTTCGT-GTGT
1 TGCACACTTA-GTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* *
7782629 TGCATACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCATGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* * *
7782684 TGCACACTTAGTGTCGATACGGTCATTCATAAACATATGATGAATTCTC-TGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATT-TCGTGGTTT
* *
7782739 TGTACACTTAGTGTCGATACGGTCGTTCATAAACATATTATGAA-TTCTGTGGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTC-GT-GGTTT
*
7782795 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGT-GGTTT
* *
7782851 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGG-GT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
** * *
7782905 TGCACACTTAGTGCCGATACATTCGTTCATAAACATATTATGAATTACGTGGATT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* * * ** *
7782960 TGCACAGTTAGTACTGATACAATCGTTCATAAACATATTACGAATTTCGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* * *
7783015 TACACATTTAGTGCCGATACGGTCGTTCATAAATATATTATGAA-TTCTGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTC-GTGGTTT
* * * * *
7783070 TTCACACTTAATGTCGATACGGTCATTCATAAACATATTATGAATTTTGTGGTTT
1 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
* * *
7783125 TGCACGCTTATTACCGATA
1 TGCACACTTAGTGCCGATA
7783144 GTACACATAG
Statistics
Matches: 502, Mismatches: 54, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
52 1 0.00
53 14 0.03
54 120 0.24
55 255 0.51
56 110 0.22
57 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (55 bp):
TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTT
Found at i:7782916 original size:276 final size:273
Alignment explanation
Indices: 7782521--7783143 Score: 856
Period size: 276 Copynumber: 2.3 Consensus size: 273
7782511 TTCTTTGAGG
* * * *
7782521 TGCACACATAGTGTCGATATGGTCGTTCATAAATATATTATGAATTTCATGGTTTTGCACACTTA
1 TGCACACTTAGTGTCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTTTGCACACTTA
* * * * *
7782586 CAT-CTATACGGTCGTTCATAAACATATTATGAATTTCGTGTGTTGCATACTTAGTGCCGATACG
66 -ATCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTGCACACTTAGTGCCGATACA
* * * **
7782650 GTCGTTCATAAACATATTATGAATTTCATGGTTTTGCACACTTAGT-GTCGATACGGTCATTCAT
130 GTCGTTCATAAACATATTATGAATTACATGGATTTGCACACTTAGTACT-GATACAATCATTCAT
* ** *
7782714 AAACATATGATGAATTCTC-TGGTTTTGTACACTTAGTGTCGATACGGTCGTTCATAAACATATT
194 AAACATATGACGAATT-TCGTGGTTTTACACACTTAGTGCCGATACGGTCGTTCATAAACATATT
7782778 ATGAATTCTGTGGGTTT
258 ATGAATTCTGT-GGTTT
* *
7782795 TGCACACTTAGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTTTGCACACTT
1 TGCACACTTAGTGTCGATACGGTCGTTCATAAACATATTATGAATTTCGT-GGTTTTGCACACTT
*
7782860 AGTGCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTGCACACTTAGTGCCGATAC
65 AAT-CCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTGCACACTTAGTGCCGATAC
* * * *
7782925 ATTCGTTCATAAACATATTATGAATTACGTGGATTTGCACAGTTAGTACTGATACAATCGTTCAT
129 AGTCGTTCATAAACATATTATGAATTACATGGATTTGCACACTTAGTACTGATACAATCATTCAT
* * *
7782990 AAACATATTACGAATTTCGTGGTTTTACACATTTAGTGCCGATACGGTCGTTCATAAATATATTA
194 AAACATATGACGAATTTCGTGGTTTTACACACTTAGTGCCGATACGGTCGTTCATAAACATATTA
7783055 TGAATTCTGTGGTTT
259 TGAATTCTGTGGTTT
* * * * *
7783070 TTCACACTTAATGTCGATACGGTCATTCATAAACATATTATGAATTTTGTGGTTTTGCACGCTTA
1 TGCACACTTAGTGTCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTTTGCACACTTA
*
7783135 TTACCGATA
66 AT-CCGATA
7783144 GTACACATAG
Statistics
Matches: 307, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
274 66 0.21
275 66 0.21
276 174 0.57
277 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (273 bp):
TGCACACTTAGTGTCGATACGGTCGTTCATAAACATATTATGAATTTCGTGGTTTTGCACACTTA
ATCCGATACGGTCGTTCATAAACATATTATGAATTCCGTGGGTTGCACACTTAGTGCCGATACAG
TCGTTCATAAACATATTATGAATTACATGGATTTGCACACTTAGTACTGATACAATCATTCATAA
ACATATGACGAATTTCGTGGTTTTACACACTTAGTGCCGATACGGTCGTTCATAAACATATTATG
AATTCTGTGGTTT
Found at i:7783384 original size:12 final size:12
Alignment explanation
Indices: 7783367--7783392 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7783357 GAAGAAGGGC
7783367 GTGCCGTTTTTT
1 GTGCCGTTTTTT
7783379 GTGCCGTTTTTT
1 GTGCCGTTTTTT
7783391 GT
1 GT
7783393 AATTCAGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.27, T:0.58
Consensus pattern (12 bp):
GTGCCGTTTTTT
Found at i:7786086 original size:89 final size:90
Alignment explanation
Indices: 7785923--7786088 Score: 264
Period size: 89 Copynumber: 1.9 Consensus size: 90
7785913 TAATCCAGCT
**
7785923 GGTAAGACCTTACGGACCTAACGATACCTTGGGTAGGCCCATAGGCCCCAAGGCATATCCTTAGG
1 GGTAAGACCTTACGGACCTAACGATACCTTGGGTAGGCCCATAGGCCCCAAGAAATATCCTTAGG
*
7785988 TTGGTTCCCTTTGTTGTGCGCTTAG
66 TTGGCTCCCTTTGTTGTGCGCTTAG
* *
7786013 GGTAA-ACC-TACGGACCTGAGGATACCATTGGGTAGGCCCATAGGCCCCAAGAAATATCCTTAG
1 GGTAAGACCTTACGGACCTAACGATACC-TTGGGTAGGCCCATAGGCCCCAAGAAATATCCTTAG
7786076 GTTGGCTCCCTTT
65 GTTGGCTCCCTTT
7786089 TGCTATGTGC
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
88 16 0.23
89 49 0.70
90 5 0.07
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (90 bp):
GGTAAGACCTTACGGACCTAACGATACCTTGGGTAGGCCCATAGGCCCCAAGAAATATCCTTAGG
TTGGCTCCCTTTGTTGTGCGCTTAG
Found at i:7788123 original size:21 final size:22
Alignment explanation
Indices: 7788077--7788124 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7788067 GACCTAACCG
* *
7788077 TTGACCACCGTTGATCGGACCT
1 TTGACCACCGTTGATCCGACCA
*
7788099 TTGACCAGCGTTGA-CCGACCA
1 TTGACCACCGTTGATCCGACCA
7788120 TTGAC
1 TTGAC
7788125 TTTTTCTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (22 bp):
TTGACCACCGTTGATCCGACCA
Found at i:7790361 original size:97 final size:97
Alignment explanation
Indices: 7790241--7790458 Score: 366
Period size: 97 Copynumber: 2.2 Consensus size: 97
7790231 GAAAGTATTG
*
7790241 ATTTACTGGTTTATGAACTATGGTACCTAAAATGTGTTATCGGATTTCCTATTTTCCACT-GAAA
1 ATTTACTGGTTTATGAACTATGGTACCTAAAATGTGTTATCGGATTTCATATTTT-CACTAGAAA
7790305 ATATGAATTGTTCATGATTTATGGAATCATGGA
65 ATATGAATTGTTCATGATTTATGGAATCATGGA
* * *
7790338 ATTTACTGGTTTATGAACTATGGTACCTGAAATGTGTTATCGGGTTTCATGTTTTCACTAGAAAA
1 ATTTACTGGTTTATGAACTATGGTACCTAAAATGTGTTATCGGATTTCATATTTTCACTAGAAAA
7790403 TATGAATTGTTCATGATTTATGGAATCATGGA
66 TATGAATTGTTCATGATTTATGGAATCATGGA
* *
7790435 ATTTATTGATTTATGAACTATGGT
1 ATTTACTGGTTTATGAACTATGGT
7790459 TTTCTGTTTT
Statistics
Matches: 114, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 4 0.04
97 110 0.96
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (97 bp):
ATTTACTGGTTTATGAACTATGGTACCTAAAATGTGTTATCGGATTTCATATTTTCACTAGAAAA
TATGAATTGTTCATGATTTATGGAATCATGGA
Found at i:7805847 original size:20 final size:20
Alignment explanation
Indices: 7805822--7805865 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
7805812 GTGTGGCCAT
7805822 TGATGTACTTCAAGGCCTCA
1 TGATGTACTTCAAGGCCTCA
7805842 TGATGTACTTCAAGGCCTCA
1 TGATGTACTTCAAGGCCTCA
7805862 TGAT
1 TGAT
7805866 CGGTAAACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (20 bp):
TGATGTACTTCAAGGCCTCA
Found at i:7815805 original size:23 final size:23
Alignment explanation
Indices: 7815766--7815809 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7815756 TCATGTCTTT
*
7815766 TTTTTTCTTTTTCTTTCGAACAG
1 TTTTTTCTTTCTCTTTCGAACAG
7815789 TTTTTT-TTTCTCTTTTCGAAC
1 TTTTTTCTTTCTC-TTTCGAAC
7815810 TGCTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.11, C:0.18, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTTTTCTTTCTCTTTCGAACAG
Found at i:7822804 original size:47 final size:47
Alignment explanation
Indices: 7822752--7822845 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
7822742 TCGATACTAC
7822752 ATTTATACCACATGAACAATATCGATATTGTTCTTGTAGTATCGATT
1 ATTTATACCACATGAACAATATCGATATTGTTCTTGTAGTATCGATT
7822799 ATTTATACCACATGAACAATATCGATATTGTTCTTGTAGTATCGATT
1 ATTTATACCACATGAACAATATCGATATTGTTCTTGTAGTATCGATT
7822846 CTACTATGCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (47 bp):
ATTTATACCACATGAACAATATCGATATTGTTCTTGTAGTATCGATT
Found at i:7826775 original size:16 final size:17
Alignment explanation
Indices: 7826748--7826782 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7826738 ACGCCGTATG
*
7826748 TTTTCCCTTTTTTTTCT
1 TTTTCCCTTTTTTCTCT
7826765 TTTTCCC-TTTTTCTCT
1 TTTTCCCTTTTTTCTCT
7826781 TT
1 TT
7826783 GCATCAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTCCCTTTTTTCTCT
Found at i:7827052 original size:18 final size:18
Alignment explanation
Indices: 7827031--7827072 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7827021 GCGAAGATGA
*
7827031 AGATGATGATGGAAATGG
1 AGATGAGGATGGAAATGG
*
7827049 AGATGAGGATGGAGATGG
1 AGATGAGGATGGAAATGG
7827067 AGATGA
1 AGATGA
7827073 CGAAGAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.43, T:0.19
Consensus pattern (18 bp):
AGATGAGGATGGAAATGG
Found at i:7829741 original size:46 final size:47
Alignment explanation
Indices: 7829683--7829790 Score: 146
Period size: 47 Copynumber: 2.3 Consensus size: 47
7829673 TTTAAAAATC
** * * *
7829683 AATTGTGATATCTACTAGAAGATATATAAA-AAATCAAGTATATGTAT
1 AATT-TGATATCTAAAAGAAGAAATATAAATAAATCAAATACATGTAT
*
7829730 AATTTGATATCTAAAAGAAGAAATATAAATAAATCAAATACATTTAT
1 AATTTGATATCTAAAAGAAGAAATATAAATAAATCAAATACATGTAT
7829777 AATTTGATATCTAA
1 AATTTGATATCTAA
7829791 TGTCACAAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 22 0.41
47 32 0.59
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.34
Consensus pattern (47 bp):
AATTTGATATCTAAAAGAAGAAATATAAATAAATCAAATACATGTAT
Found at i:7833216 original size:2 final size:2
Alignment explanation
Indices: 7833174--7833198 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7833164 TTAAAATGCA
7833174 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7833199 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7833744 original size:18 final size:18
Alignment explanation
Indices: 7833718--7833773 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
7833708 TATTTGTCAA
7833718 ATTAATATATATATAATC
1 ATTAATATATATATAATC
* * *
7833736 ATTATTATATTTTTAA--
1 ATTAATATATATATAATC
* *
7833752 ATTAAAAAATATATAATC
1 ATTAATATATATATAATC
7833770 ATTA
1 ATTA
7833774 TTATGTTAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
16 11 0.39
18 17 0.61
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTAATATATATATAATC
Found at i:7833756 original size:34 final size:35
Alignment explanation
Indices: 7833706--7833777 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 35
7833696 TTAAGAAAAA
* *
7833706 TATATTTGTCAAATTAATATATATATAATCATTAT
1 TATATTTGTCAAATTAAAAAATATATAATCATTAT
*
7833741 TATATTT-TTAAATTAAAAAATATATAATCATTAT
1 TATATTTGTCAAATTAAAAAATATATAATCATTAT
7833775 TAT
1 TAT
7833778 GTTAAATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 27 0.79
35 7 0.21
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (35 bp):
TATATTTGTCAAATTAAAAAATATATAATCATTAT
Found at i:7835424 original size:182 final size:184
Alignment explanation
Indices: 7835117--7835482 Score: 709
Period size: 182 Copynumber: 2.0 Consensus size: 184
7835107 AGGCGTTAAT
*
7835117 ACTAACTAGAAAATATTAGATAAAATATACCAAAGAGATAATAATAGTATTTCGTTATATTAATC
1 ACTAACTAGAAAATATTAGATAAAATATACAAAAGAGATAATAATAGTATTTCGTTATATTAATC
7835182 ACTATCTTAAATGCTAATTCGTCATGATGTGTGTAATAGCTATAATGGACGAACAACCGTCTGA-
66 ACTATCTTAAATGCTAATTCGTCATGATGTGTGTAATAGCTATAATGGACGAACAACCGTCTGAG
7835246 GTTAGCACGACTCTCTAAA-TTCGTACACTCGAAAGATGGAGTGAACTTAGGTG
131 GTTAGCACGACTCTCTAAATTTCGTACACTCGAAAGATGGAGTGAACTTAGGTG
7835299 ACTAACTAGAAAATATTAGATAAAATATACAAAAGAGATAATAATAGTATTTCGTTATATTAATC
1 ACTAACTAGAAAATATTAGATAAAATATACAAAAGAGATAATAATAGTATTTCGTTATATTAATC
7835364 ACTATCTTAAATGCTAATTCGTCATGATGTGTGTAATAGCTATAATGGACGAACAACCGTCTGAG
66 ACTATCTTAAATGCTAATTCGTCATGATGTGTGTAATAGCTATAATGGACGAACAACCGTCTGAG
7835429 GTTAGCACGACTCTCTAAATTTCGTACACTCGAAAGATGGAGTGAACTTAGGTG
131 GTTAGCACGACTCTCTAAATTTCGTACACTCGAAAGATGGAGTGAACTTAGGTG
7835483 GTACTATCTT
Statistics
Matches: 181, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
182 128 0.71
183 19 0.10
184 34 0.19
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (184 bp):
ACTAACTAGAAAATATTAGATAAAATATACAAAAGAGATAATAATAGTATTTCGTTATATTAATC
ACTATCTTAAATGCTAATTCGTCATGATGTGTGTAATAGCTATAATGGACGAACAACCGTCTGAG
GTTAGCACGACTCTCTAAATTTCGTACACTCGAAAGATGGAGTGAACTTAGGTG
Found at i:7853100 original size:44 final size:44
Alignment explanation
Indices: 7852963--7853245 Score: 415
Period size: 44 Copynumber: 6.4 Consensus size: 44
7852953 CTATATAATT
* * * *
7852963 TTTTATCAATATACATACCATTTAATCCATAATCTCGTAAGCTTA
1 TTTTACCAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTA
* * *
7853008 TTTTACCAATATACTTACCATTAAATCCCTAAGCTCGTAATCTTA
1 TTTTACCAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTA
*
7853053 TTTTATCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
*
7853097 TTTTACCAATA-ACTTACCATTATTCCATAAGCTTGTAAGCTTA
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
*
7853140 TTTTACCCATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
* * * *
7853184 TTTTACCAATGTACTTACTATAATTCCATAAGATCGTAAGCTTA
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
7853228 TTTTACCAATATACTTAC
1 TTTTACCAATATACTTAC
7853246 TATAATTTGC
Statistics
Matches: 217, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
43 41 0.19
44 118 0.54
45 58 0.27
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.40
Consensus pattern (44 bp):
TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTA
Found at i:7853162 original size:87 final size:87
Alignment explanation
Indices: 7852963--7853245 Score: 404
Period size: 87 Copynumber: 3.2 Consensus size: 87
7852953 CTATATAATT
* * * *
7852963 TTTTATCAATATACATACCATTTAATCCATAATCTCGTAAGCTTATTTTACCAATATACTTACCA
1 TTTTACCAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACCAATA-ACTTACCA
* * *
7853028 TTAAATCCCTAAGCTCGTAATCTTA
64 TT-ATTCCATAAGCTCGTAAGCTTA
*
7853053 TTTTATCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATAACTTACCATT
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATAACTTACCATT
*
7853118 ATTCCATAAGCTTGTAAGCTTA
66 ATTCCATAAGCTCGTAAGCTTA
* * *
7853140 TTTTACCCATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATGTACTTACTAT
1 TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAAT-AACTTACCAT
* *
7853205 AATTCCATAAGATCGTAAGCTTA
65 TATTCCATAAGCTCGTAAGCTTA
7853228 TTTTACCAATATACTTAC
1 TTTTACCAATATACTTAC
7853246 TATAATTTGC
Statistics
Matches: 177, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
87 70 0.40
88 55 0.31
89 33 0.19
90 19 0.11
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.40
Consensus pattern (87 bp):
TTTTACCAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACCAATAACTTACCATT
ATTCCATAAGCTCGTAAGCTTA
Found at i:7853223 original size:131 final size:134
Alignment explanation
Indices: 7852963--7853245 Score: 419
Period size: 131 Copynumber: 2.1 Consensus size: 134
7852953 CTATATAATT
* * *
7852963 TTTTATCAATATACATACCATTTAATCCATAATCTCGTAAGCTTATTTTACCAATATACTTACCA
1 TTTTACCAATATACTTACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA
* * * * *
7853028 TTAAATCCCTAAGCTCGTAATCTTATTTTATCAATATACTTACCATTATTCCATAAGCTCGTAAG
66 TTAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAATTCCATAAGATCGTAAG
7853093 CTTA
131 CTTA
* * *
7853097 TTTTACCAATA-ACTTACCA-TTATTCCATAAGCTTGTAAGCTTATTTTACCCATATACTTACCA
1 TTTTACCAATATACTTACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA
* * *
7853160 TT-ATTCCATAAGCTCGTAAGCTTATTTTACCAATGTACTTACTATAATTCCATAAGATCGTAAG
66 TTAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAATTCCATAAGATCGTAAG
7853224 CTTA
131 CTTA
7853228 TTTTACCAATATACTTAC
1 TTTTACCAATATACTTAC
7853246 TATAATTTGC
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 69 0.51
132 48 0.36
133 7 0.05
134 10 0.07
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.40
Consensus pattern (134 bp):
TTTTACCAATATACTTACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCA
TTAAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATAATTCCATAAGATCGTAAG
CTTA
Found at i:7853569 original size:60 final size:60
Alignment explanation
Indices: 7853406--7853573 Score: 230
Period size: 60 Copynumber: 2.8 Consensus size: 60
7853396 TTGTTTCTCA
* * **
7853406 TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAATACGATTCCTTTACCAT
1 TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGACCCCTTTACCAT
* *
7853466 TTTTAGCACCTGAAGTGCCCTCTTCGAGAATCCATACCATTAGTATGACCCCTTTACCAT
1 TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGACCCCTTTACCAT
* * **
7853526 TTTTAGCACATGAAGTTCCCTATAT-GAAAATCCATACTGTTAGTATGA
1 TTTTAGCACATGAAGTGCCCTAT-TCGAGAATCCATACCATTAGTATGA
7853574 TTTCCTTATC
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
60 94 0.99
61 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (60 bp):
TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGACCCCTTTACCAT
Found at i:7853630 original size:59 final size:59
Alignment explanation
Indices: 7853609--7854066 Score: 636
Period size: 59 Copynumber: 7.8 Consensus size: 59
7853599 GTGCTTTTTC
* * * * * * *
7853609 TGGAAATCCCTACACTCAGTATGATTCCCTTACCATTTTAGCACA-TATAATGC-CCTATC
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACT-CAGTGCTCC-ATA
* * *
7853668 TGGAAATTCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
* * * * *
7853727 TGGAAATCCATACACTTAGTAAGATTTCCTTCTCATTTTAGCACACTCAATGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
*
7853786 TGGAAATCCATACACTCATTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
* * * * *
7853845 TGGAAATTCATACATTCAGTATGATTTCCTTATCATTTTAGCACA-TATAGTGC-CCTATT
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACT-CAGTGCTCC-ATA
* * *
7853904 TGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTTCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
7853963 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
7854022 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACA
1 TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACA
7854067 TATAATTCCA
Statistics
Matches: 356, Mismatches: 37, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
58 3 0.01
59 347 0.97
60 6 0.02
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (59 bp):
TGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
Found at i:7854094 original size:118 final size:118
Alignment explanation
Indices: 7853526--7854066 Score: 660
Period size: 118 Copynumber: 4.6 Consensus size: 118
7853516 CCTTTACCAT
* * * ** * * * *
7853526 TTTTAGCACATGA-AGTTCCCTATATGAAAATCCATACTGTTAGTATGATTTCCTTATCCTTGTA
1 TTTTAGCACAT-ACAATGCCCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTTA
* * * *** * * * *
7853590 TCACCCTTAGTGCTTTTTCTGGAAATCCCTACACTCAGTATGATTCCCTTACCA
65 GCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
* * * * *
7853644 TTTTAGCACATATAATGCCCTATCTGGAAATTCATATATTCAATATGATTTCCTTATCATTTTAG
1 TTTTAGCACATACAATGCCCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAG
* * *
7853709 CACACTCAGTGCTCCATATGGAAATCCATACACTTAGTAAGATTTCCTTCTCA
66 CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
*
7853762 TTTTAGCACACT-CAATGCTCC-ATATGGAAATCCATACACTCATTATGATTTCCTTATCATTTT
1 TTTTAGCACA-TACAATGC-CCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTT
* *
7853825 AGCACACTCAGTGCTCCATATGGAAATTCATACATTCAGTATGATTTCCTTATCA
64 AGCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
* * * * *
7853880 TTTTAGCACATATAGTGCCCTATTTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAG
1 TTTTAGCACATACAATGCCCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAG
* *
7853945 CACACTCAGTTCTCCATATGGAAATCCATACACTCAATATGATTTCCTTATCA
66 CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
*
7853998 TTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTT
1 TTTTAGCACA-TACAATGC-CCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTT
7854061 AGCACA
64 AGCACA
7854067 TATAATTCCA
Statistics
Matches: 366, Mismatches: 50, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
117 4 0.01
118 356 0.97
119 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.37
Consensus pattern (118 bp):
TTTTAGCACATACAATGCCCTATATGGAAATCCATACACTCAATATGATTTCCTTATCATTTTAG
CACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCA
Found at i:7878867 original size:21 final size:23
Alignment explanation
Indices: 7878819--7878919 Score: 79
Period size: 23 Copynumber: 4.6 Consensus size: 23
7878809 ACACTAGACA
* *
7878819 GTGCATCGATGCA-TCCCTTGAAT
1 GTGCATCGATACACT-CCATGAAT
7878842 GTGCATCGATACA-T-CATGAAT
1 GTGCATCGATACACTCCATGAAT
* * * *
7878863 ATGCACCGATGCACTCCTTGAAT
1 GTGCATCGATACACTCCATGAAT
* *
7878886 GTGCATCGATGCACT-C-TG-CT
1 GTGCATCGATACACTCCATGAAT
7878906 GTGCATCGATACAC
1 GTGCATCGATACAC
7878920 CTTTCGGGTT
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
20 14 0.21
21 18 0.27
22 2 0.03
23 32 0.48
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (23 bp):
GTGCATCGATACACTCCATGAAT
Found at i:7878901 original size:23 final size:22
Alignment explanation
Indices: 7878819--7878898 Score: 99
Period size: 23 Copynumber: 3.6 Consensus size: 22
7878809 ACACTAGACA
7878819 GTGCATCGATGCATCCCTTGAAT
1 GTGCATCGATGCAT-CCTTGAAT
* *
7878842 GTGCATCGATACAT-CATGAAT
1 GTGCATCGATGCATCCTTGAAT
* *
7878863 ATGCACCGATGCACTCCTTGAAT
1 GTGCATCGATGCA-TCCTTGAAT
7878886 GTGCATCGATGCA
1 GTGCATCGATGCA
7878899 CTCTGCTGTG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
21 16 0.34
22 1 0.02
23 30 0.64
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (22 bp):
GTGCATCGATGCATCCTTGAAT
Found at i:7879436 original size:27 final size:27
Alignment explanation
Indices: 7879380--7879434 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
7879370 TTACTGTTGG
7879380 AACATTGTTTTCAAAAATAATTTTTCA
1 AACATTGTTTTCAAAAATAATTTTTCA
* *
7879407 AACATTGTTTTC-TAAATAGTTTTTCA
1 AACATTGTTTTCAAAAATAATTTTTCA
7879433 AA
1 AA
7879435 ACTATGCCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.45
Consensus pattern (27 bp):
AACATTGTTTTCAAAAATAATTTTTCA
Found at i:7881678 original size:64 final size:65
Alignment explanation
Indices: 7881608--7881761 Score: 177
Period size: 65 Copynumber: 2.4 Consensus size: 65
7881598 ACCCCATTTT
* *
7881608 GAATGCATTTTATGCACCGATGCACAG-CCATGCATCGATGCAC-TCAGGATTTTATTGAAACAT
1 GAATGCATTTTATGCATCGATGCACAGACCATGCATCAATGCACTTCAGGATTTT-TTGAAACAT
7881671 C
65 C
* * * * ** *
7881672 GAATGCATTTTATGCATCGATACACAGACCTTGCCTTAATGCACTTTTGGCTTTTTTGAAACATC
1 GAATGCATTTTATGCATCGATGCACAGACCATGCATCAATGCACTTCAGGATTTTTTGAAACATC
* * *
7881737 GAATGTAATTAATGCATCGATGCAC
1 GAATGCATTTTATGCATCGATGCAC
7881762 CCCTAGTGTA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
64 25 0.33
65 43 0.57
66 7 0.09
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (65 bp):
GAATGCATTTTATGCATCGATGCACAGACCATGCATCAATGCACTTCAGGATTTTTTGAAACATC
Found at i:7888784 original size:56 final size:57
Alignment explanation
Indices: 7888699--7888915 Score: 294
Period size: 57 Copynumber: 3.8 Consensus size: 57
7888689 TTGACATGAT
* * * * *
7888699 GAATTTTTAAAGAAGCTAAGCCTGATTTTCAGGGGTTTCTTGATAATTATTTCGAAT
1 GAATTTTTAAAGAAACTAAGCCTGATTTTCAGGGGATTCTTGATGATTATTTCCAAA
7888756 GAA-TTTTAAAGAAACTAAGCCTGATTTTCAGGGGATTCTTGATGATTATTTCCAAA
1 GAATTTTTAAAGAAACTAAGCCTGATTTTCAGGGGATTCTTGATGATTATTTCCAAA
* * *
7888812 GATTTTTTAAAGAATA-TAAGCCTGTTTTTTAGGGGATTCTTGATGATTATTTCCAAA
1 GAATTTTTAAAGAA-ACTAAGCCTGATTTTCAGGGGATTCTTGATGATTATTTCCAAA
* * * * *
7888869 CAATTTTTAAAGAAGCTAAGCCTAATTTTTAGGGGTTTCTTGATGAT
1 GAATTTTTAAAGAAACTAAGCCTGATTTTCAGGGGATTCTTGATGAT
7888916 AACTGTAAAC
Statistics
Matches: 143, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
56 50 0.35
57 92 0.64
58 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (57 bp):
GAATTTTTAAAGAAACTAAGCCTGATTTTCAGGGGATTCTTGATGATTATTTCCAAA
Found at i:7889074 original size:41 final size:42
Alignment explanation
Indices: 7888973--7889084 Score: 109
Period size: 42 Copynumber: 2.7 Consensus size: 42
7888963 TCTTGATTAG
* * ** * * *
7888973 TAAGTCCTTCAGGCCATCAATAATTCTTTCGAGCATGATGCT
1 TAAGTCCTTCGGGCCATCTATAAGCCTTTCAAGCAAGATGCA
** * *
7889015 TAAACCCTTTGGGTCATCTATAAGCCTTTCAAGCAAGATG-A
1 TAAGTCCTTCGGGCCATCTATAAGCCTTTCAAGCAAGATGCA
7889056 TAAGTCCTTCGGGCCATCTATAAGACCTT
1 TAAGTCCTTCGGGCCATCTATAAG-CCTT
7889085 CGGGCAGAAA
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 20 0.37
42 34 0.63
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
TAAGTCCTTCGGGCCATCTATAAGCCTTTCAAGCAAGATGCA
Found at i:7889402 original size:59 final size:60
Alignment explanation
Indices: 7889308--7889453 Score: 186
Period size: 59 Copynumber: 2.5 Consensus size: 60
7889298 GAATGTTTTC
* * *
7889308 ACATTTCCTATTGCTCGATTCACGACATTTTGAATCAGCAACACCTCACTCGAGGGATCA
1 ACATTTCCTATTGCTCGATTCACGACAATTCGAATCAGCAACACCCCACTCGAGGGATCA
* * * * * * * *
7889368 ACATTTTCT-TTGCTCAATTCACGGCAATTCGAATCATCGACACCCCACTTGAGGGGTTA
1 ACATTTCCTATTGCTCGATTCACGACAATTCGAATCAGCAACACCCCACTCGAGGGATCA
7889427 ACATTTCCTATTGCTCGATTCACGACA
1 ACATTTCCTATTGCTCGATTCACGACA
7889454 TATTGAAATA
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 48 0.68
60 23 0.32
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (60 bp):
ACATTTCCTATTGCTCGATTCACGACAATTCGAATCAGCAACACCCCACTCGAGGGATCA
Found at i:7889573 original size:41 final size:41
Alignment explanation
Indices: 7889468--7889573 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 41
7889458 GAAATAGCAA
* *
7889468 AAGTCCTTCGGGCCATCAGTAAGTTTTTCGAGCATGATGCTT
1 AAGTCCTTCGGGCCATCA-TAAGTTTTTCGAGCAAGATGCAT
* * *
7889510 AAATCCTTCGGGTCATTTATAAGTCTTTT-GAGCAAGATG-AT
1 AAGTCCTTCGGGCCA-TCATAAGT-TTTTCGAGCAAGATGCAT
*
7889551 AAGTCATTCGGGCCATCCATAAG
1 AAGTCCTTCGGGCCAT-CATAAG
7889574 ACCTTCAGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
40 1 0.02
41 18 0.35
42 27 0.52
43 6 0.12
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (41 bp):
AAGTCCTTCGGGCCATCATAAGTTTTTCGAGCAAGATGCAT
Found at i:7892033 original size:20 final size:19
Alignment explanation
Indices: 7892010--7892047 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7892000 ATTTCATGAA
*
7892010 TAGTATCGATACCGAAGGGG
1 TAGTATAGATACC-AAGGGG
7892030 TAGTATAGATACCAAGGG
1 TAGTATAGATACCAAGGG
7892048 TACCGATACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (19 bp):
TAGTATAGATACCAAGGGG
Found at i:7892704 original size:22 final size:22
Alignment explanation
Indices: 7892679--7892732 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
7892669 TTTTTTGGGA
7892679 CATTTTATGTGGCACTTCGGTG
1 CATTTTATGTGGCACTTCGGTG
* *
7892701 CATTTCTACGTGGCACTTGGGTG
1 CATTT-TATGTGGCACTTCGGTG
*
7892724 CATTCTATG
1 CATTTTATG
7892733 CGAGCTGTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 8 0.30
23 19 0.70
ACGTcount: A:0.15, C:0.20, G:0.26, T:0.39
Consensus pattern (22 bp):
CATTTTATGTGGCACTTCGGTG
Found at i:7899206 original size:55 final size:55
Alignment explanation
Indices: 7899119--7899354 Score: 212
Period size: 55 Copynumber: 4.3 Consensus size: 55
7899109 ATTACCAAAT
* * *
7899119 GGCACTATGTTTGCAAAAACTAAGAAATTCATAATAATTTTATGAATTTCTGTATG
1 GGCACTATGTGTGC-AAAACTAAGAAATTCATAATAATTTTATGAATTTCAGTATA
* *
7899175 GGCACTATGTGTGCAAAACTATGAAATTCATAATAAATTTATGAATTTCAGTATA
1 GGCACTATGTGTGCAAAACTAAGAAATTCATAATAATTTTATGAATTTCAGTATA
* * * * *
7899230 GGCAATGTGTGTTCAAAACTACA-AAATTAATAATAATTTTATGAATTTTA-TA-A
1 GGCACTATGTGTGCAAAACTA-AGAAATTCATAATAATTTTATGAATTTCAGTATA
* * * * * * * * * *
7899283 TGGTATTAGGTGTGC-AACCCACATAAATT-ATAATAAGTTTGTGAATTACAGTATT
1 -GGCACTATGTGTGCAAAACTA-AGAAATTCATAATAATTTTATGAATTTCAGTATA
*
7899338 GGCACTACGTGTGCAAA
1 GGCACTATGTGTGCAAA
7899355 CTATAAAGTT
Statistics
Matches: 147, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
53 24 0.16
54 29 0.20
55 81 0.55
56 13 0.09
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (55 bp):
GGCACTATGTGTGCAAAACTAAGAAATTCATAATAATTTTATGAATTTCAGTATA
Found at i:7899350 original size:110 final size:110
Alignment explanation
Indices: 7899134--7899350 Score: 239
Period size: 110 Copynumber: 2.0 Consensus size: 110
7899124 TATGTTTGCA
* * *
7899134 AAAACTAAGAAATTCATAATAATTTTATGAATTTCTGTATGGGCACTATGTGTGCAAAACTATGA
1 AAAACTAAGAAATTAATAATAATTTTATGAATTTCTATATGGGCACTAGGTGTGCAAAACTATGA
* *
7899199 AATTCATAATAAATTTATGAATTTCAGTATAGGCAATGTGTGTTC
66 AATTCATAATAAATTTATGAATTACAGTATAGGCAACGTGTGTTC
* * *
7899244 AAAACTACA-AAATTAATAATAATTTTATGAATTT-TATAAT-GGTATTAGGTGTGCAACCCAC-
1 AAAACTA-AGAAATTAATAATAATTTTATGAATTTCTAT-ATGGGCACTAGGTGTGCAA--AACT
* * *
7899305 AT-AAATT-ATAATAAGTTTGTGAATTACAGTATTGGCACTACGTGTG
62 ATGAAATTCATAATAAATTTATGAATTACAGTATAGGCA--ACGTGTG
7899351 CAAACTATAA
Statistics
Matches: 90, Mismatches: 11, Indels: 12
0.80 0.10 0.11
Matches are distributed among these distances:
108 26 0.29
109 20 0.22
110 41 0.46
111 3 0.03
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (110 bp):
AAAACTAAGAAATTAATAATAATTTTATGAATTTCTATATGGGCACTAGGTGTGCAAAACTATGA
AATTCATAATAAATTTATGAATTACAGTATAGGCAACGTGTGTTC
Found at i:7899585 original size:45 final size:45
Alignment explanation
Indices: 7899536--7900061 Score: 739
Period size: 45 Copynumber: 11.7 Consensus size: 45
7899526 CTAACTGAGT
*
7899536 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTCCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * * *
7899581 TTAAATGCATGAAAGGATGTCGTAAATGAAATGCATAATGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
*
7899626 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGTA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* *
7899671 TTAAAGGCATGAAAGGATGCCATAAATGAAATTCATATCGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* *
7899716 TTTAAGGCATGAAAGGATGCCATAAATGAAATGCATATCGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * *
7899761 TTAAAGACATGAAATGATGCCATAATTGAAATGCATAACGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * *
7899806 TTAAATGCATGAAAGGATGCCATAAATGAAAAGCATAAAGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * * **
7899851 TTAAAGGCATGAAAGTATGCTATAAATTAAAAT-CATAAATGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAA-TGAAATGCATAACGGTGCA
* * * *
7899896 TTAAAGGCATGAAAGGATTCCATAAATAAAATGCGTAACGGTGTA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* * * * *
7899941 TTAAAGGGATGAAAGGATGCCATAAATGAATTGCATAATGATACA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
* *
7899986 TTAAAGACTTGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
*
7900031 TTAAAGGCATGAAAGGATGCCCTAAATGAAA
1 TTAAAGGCATGAAAGGATGCCATAAATGAAA
7900062 ATAATGAATA
Statistics
Matches: 421, Mismatches: 58, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
44 6 0.01
45 411 0.98
46 4 0.01
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.24
Consensus pattern (45 bp):
TTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACGGTGCA
Found at i:7902551 original size:36 final size:36
Alignment explanation
Indices: 7902509--7902622 Score: 117
Period size: 36 Copynumber: 3.2 Consensus size: 36
7902499 ATTCCTTATA
7902509 TAGGTTCCGACCGATCGAACTCGTAATTCCCTACGG
1 TAGGTTCCGACCGATCGAACTCGTAATTCCCTACGG
* ** * * **
7902545 TAGGTT-C-ATCTTGATTAAACTAGTAATTCCTTA-TA
1 TAGGTTCCGA-C-CGATCGAACTCGTAATTCCCTACGG
*
7902580 TAGGTTCAGACCGATCGAACTCGTAATTCCCTACGG
1 TAGGTTCCGACCGATCGAACTCGTAATTCCCTACGG
7902616 TAGGTTC
1 TAGGTTC
7902623 ATCTTGATTA
Statistics
Matches: 58, Mismatches: 15, Indels: 10
0.70 0.18 0.12
Matches are distributed among these distances:
34 1 0.02
35 25 0.43
36 31 0.53
37 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (36 bp):
TAGGTTCCGACCGATCGAACTCGTAATTCCCTACGG
Found at i:7902592 original size:71 final size:71
Alignment explanation
Indices: 7902497--7902680 Score: 341
Period size: 71 Copynumber: 2.6 Consensus size: 71
7902487 ATCAAACTGA
*
7902497 TAATTCCTTATATAGGTTCCGACCGATCGAACTCGTAATTCCCTACGGTAGGTTCATCTTGATTA
1 TAATTCCTTATATAGGTTCAGACCGATCGAACTCGTAATTCCCTACGGTAGGTTCATCTTGATTA
7902562 AACTAG
66 AACTAG
7902568 TAATTCCTTATATAGGTTCAGACCGATCGAACTCGTAATTCCCTACGGTAGGTTCATCTTGATTA
1 TAATTCCTTATATAGGTTCAGACCGATCGAACTCGTAATTCCCTACGGTAGGTTCATCTTGATTA
7902633 AACTAG
66 AACTAG
* *
7902639 TAATTCCTTATATAGGTTCAGACCGATCAAACTGGTAATTCC
1 TAATTCCTTATATAGGTTCAGACCGATCGAACTCGTAATTCC
7902681 TGACGGATCT
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 110 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (71 bp):
TAATTCCTTATATAGGTTCAGACCGATCGAACTCGTAATTCCCTACGGTAGGTTCATCTTGATTA
AACTAG
Found at i:7902623 original size:36 final size:35
Alignment explanation
Indices: 7902487--7902680 Score: 142
Period size: 35 Copynumber: 5.5 Consensus size: 35
7902477 GTTCAACTCA
* * *
7902487 ATCAAACT-GATAATTCCTTATATAGGTTCCGACCG
1 ATCAAACTAG-TAATTCCCTAGATAGGTTCAGACCG
* * * * *
7902522 ATCGAACTCGTAATTCCCTACGGTAGGTTCA-TCTTG
1 ATCAAACTAGTAATTCCCTA-GATAGGTTCAGAC-CG
* * *
7902558 ATTAAACTAGTAATTCCTTATATAGGTTCAGACCG
1 ATCAAACTAGTAATTCCCTAGATAGGTTCAGACCG
* * * * *
7902593 ATCGAACTCGTAATTCCCTACGGTAGGTTCA-TCTTG
1 ATCAAACTAGTAATTCCCTA-GATAGGTTCAGAC-CG
* * *
7902629 ATTAAACTAGTAATTCCTTATATAGGTTCAGACCG
1 ATCAAACTAGTAATTCCCTAGATAGGTTCAGACCG
*
7902664 ATCAAACTGGTAATTCC
1 ATCAAACTAGTAATTCC
7902681 TGACGGATCT
Statistics
Matches: 119, Mismatches: 33, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
35 67 0.56
36 52 0.44
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (35 bp):
ATCAAACTAGTAATTCCCTAGATAGGTTCAGACCG
Found at i:7907051 original size:24 final size:24
Alignment explanation
Indices: 7907019--7907073 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
7907009 CATCTAGTTT
7907019 CTCATCAAAGATTGCTTATTGTTC
1 CTCATCAAAGATTGCTTATTGTTC
7907043 CTCATCAAAGATTGCTTATTGTTC
1 CTCATCAAAGATTGCTTATTGTTC
7907067 CTCATCA
1 CTCATCA
7907074 TGAACTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (24 bp):
CTCATCAAAGATTGCTTATTGTTC
Found at i:7912578 original size:13 final size:13
Alignment explanation
Indices: 7912556--7912588 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7912546 AGGCTTTAAA
7912556 AATA-ATAATATT
1 AATATATAATATT
7912568 AATATATAATATT
1 AATATATAATATT
*
7912581 ATTATATA
1 AATATATA
7912589 TAACAACGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATATATAATATT
Found at i:7912578 original size:16 final size:15
Alignment explanation
Indices: 7912557--7912591 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7912547 GGCTTTAAAA
7912557 ATAATAATATTAATAT
1 ATAATAATATT-ATAT
*
7912573 ATAATATTATTATAT
1 ATAATAATATTATAT
7912588 ATAA
1 ATAA
7912592 CAACGTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATAATAATATTATAT
Found at i:7913156 original size:20 final size:20
Alignment explanation
Indices: 7913132--7913226 Score: 111
Period size: 20 Copynumber: 4.8 Consensus size: 20
7913122 AAAATTATCT
*
7913132 AAAGGATTTACAAATTACCC
1 AAAGGATTTACAAATGACCC
* * *
7913152 GAAGGTTTTACAAACGACCC
1 AAAGGATTTACAAATGACCC
* *
7913172 AAAGGCTTTACAAACGACCC
1 AAAGGATTTACAAATGACCC
7913192 AAA-GACTTTACAAATGACCC
1 AAAGGA-TTTACAAATGACCC
*
7913212 AAAGGTTTTACAAAT
1 AAAGGATTTACAAAT
7913227 TTGTGAGAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
19 1 0.02
20 62 0.97
21 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (20 bp):
AAAGGATTTACAAATGACCC
Found at i:7913872 original size:20 final size:21
Alignment explanation
Indices: 7913823--7913875 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
7913813 ACATCCGATA
* *
7913823 AATCTTTCATCTTTGAAAAGTG
1 AATCTATCATCTTTG-AAAGAG
7913845 AATCTATCATCTTTG-AAGAG
1 AATCTATCATCTTTGAAAGAG
*
7913865 AATTTATCATC
1 AATCTATCATC
7913876 CATGTAGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 14 0.50
22 14 0.50
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (21 bp):
AATCTATCATCTTTGAAAGAG
Found at i:7919873 original size:5 final size:5
Alignment explanation
Indices: 7919863--7919890 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7919853 GAGGAAAATC
7919863 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATA
7919891 CAACCTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:7920467 original size:7 final size:7
Alignment explanation
Indices: 7920457--7920483 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7920447 AAATACTAAA
7920457 TAATATT
1 TAATATT
7920464 TAATATT
1 TAATATT
7920471 TAATATT
1 TAATATT
7920478 TAATAT
1 TAATAT
7920484 AAATATTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAATATT
Found at i:7921868 original size:13 final size:13
Alignment explanation
Indices: 7921846--7921883 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
7921836 AGACTTTATA
7921846 AATA-ATAATATT
1 AATATATAATATT
7921858 AATATATAATATT
1 AATATATAATATT
7921871 ATTATATATAATA
1 A--ATATATAATA
7921884 ACATATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.17
13 9 0.39
15 10 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATATATAATATT
Found at i:7931701 original size:21 final size:21
Alignment explanation
Indices: 7931675--7931717 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7931665 TTAGTATAAA
7931675 TTATCATATCATTCATACCAT
1 TTATCATATCATTCATACCAT
* * *
7931696 TTATCATGTCTTTCATATCAT
1 TTATCATATCATTCATACCAT
7931717 T
1 T
7931718 CAAATATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.21, G:0.02, T:0.49
Consensus pattern (21 bp):
TTATCATATCATTCATACCAT
Found at i:7932413 original size:16 final size:17
Alignment explanation
Indices: 7932379--7932413 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7932369 TGCATAACTA
*
7932379 AATGAACTATATGTATT
1 AATGAACTACATGTATT
7932396 AATGAACTACAT-TATT
1 AATGAACTACATGTATT
7932412 AA
1 AA
7932414 ATCAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (17 bp):
AATGAACTACATGTATT
Found at i:7935498 original size:19 final size:20
Alignment explanation
Indices: 7935474--7935525 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
7935464 CTGCCAAGAG
7935474 CATGTATTTTCATT-AAAAC
1 CATGTATTTTCATTAAAAAC
*
7935493 CATGTATTTTCATTAAAAAAT
1 CATGTATTTTCATT-AAAAAC
7935514 CATGTATTTTCA
1 CATGTATTTTCA
7935526 AAGGGATTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.47
21 16 0.53
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (20 bp):
CATGTATTTTCATTAAAAAC
Found at i:7946870 original size:17 final size:16
Alignment explanation
Indices: 7946846--7946893 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
7946836 GTTGGCTTTG
7946846 ACTTTCTTTTTGTTGGA
1 ACTTTCTTTTT-TTGGA
* *
7946863 ATTTTCTTTTCTTTTGA
1 ACTTTCTTTT-TTTGGA
7946880 ACTTTCTTTTTTTG
1 ACTTTCTTTTTTTG
7946894 TTTTTACACT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 3 0.12
17 22 0.85
18 1 0.04
ACGTcount: A:0.10, C:0.12, G:0.10, T:0.67
Consensus pattern (16 bp):
ACTTTCTTTTTTTGGA
Found at i:7951203 original size:5 final size:5
Alignment explanation
Indices: 7951193--7951220 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7951183 CTCTTTAAAT
7951193 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
7951221 CAAATTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:7952774 original size:17 final size:17
Alignment explanation
Indices: 7952744--7952796 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
7952734 AATTAAGATT
* *
7952744 TAGTCTAATAAATGAAC
1 TAGTTTAATGAATGAAC
*
7952761 TAGTTTGATGAATGAAC
1 TAGTTTAATGAATGAAC
*
7952778 TAGTTTAATTAATGAAC
1 TAGTTTAATGAATGAAC
7952795 TA
1 TA
7952797 ACTCTATTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.36
Consensus pattern (17 bp):
TAGTTTAATGAATGAAC
Found at i:7954007 original size:40 final size:39
Alignment explanation
Indices: 7953963--7954080 Score: 173
Period size: 40 Copynumber: 3.0 Consensus size: 39
7953953 GGTTTATAAC
* *
7953963 ACACTTCAGTGTATATGGTGGGCACGACTTTATGTGTAA
1 ACACTTCGGTGTATATGGTGGGCACGACCTTATGTGTAA
* *
7954002 TACACTTCGGTGTATATGCTGGGCATGACCTTATGTGTAA
1 -ACACTTCGGTGTATATGGTGGGCACGACCTTATGTGTAA
*
7954042 ATCATTTCGGTGTATATGGTGGGCACGACCTTATGTGTA
1 A-CACTTCGGTGTATATGGTGGGCACGACCTTATGTGTA
7954081 GCACTACGGT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (39 bp):
ACACTTCGGTGTATATGGTGGGCACGACCTTATGTGTAA
Found at i:7954274 original size:45 final size:45
Alignment explanation
Indices: 7954184--7954392 Score: 305
Period size: 45 Copynumber: 4.7 Consensus size: 45
7954174 GGTAAGTATG
*
7954184 AAAATAAGCTTACGAGCTTATGGAAT-AATGGCAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT
**
7954228 AAAATAAGCTTACGATATTATGGAATAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT
** * *
7954273 AATTTAAGCTTACAATCTTATGGAATAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT
* *
7954318 AAAATAAGCTTACGAGCTTATGGAACAGATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT
*
7954363 AAAATAAGCTTATGAGCTTATAGG-ATAAAT
1 AAAATAAGCTTACGAGCTTAT-GGAATAAAT
7954393 AATAAGAAAT
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
44 24 0.16
45 121 0.82
46 2 0.01
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (45 bp):
AAAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGT
Found at i:7957938 original size:145 final size:145
Alignment explanation
Indices: 7957675--7957960 Score: 509
Period size: 145 Copynumber: 2.0 Consensus size: 145
7957665 TGGATTGAGA
* *
7957675 TGTTTTTTTAGCGAACTCTTCATCTCATGATCAAAATCTTAAATTGAGAATTTGATGAAAAATCT
1 TGTTTTTTTAGCGAACTCATAATCTCATGATCAAAATCTTAAATTGAGAATTTGATGAAAAATCT
*
7957740 TGTACATCATCTCTTGTATAATCATTTATTCTTGTGTACTTTCGAGACATAATGAAAAGAAAAGA
66 TGTACATCATCTCTTGTATAATCATTTATTCTTGTGCACTTTCGAGACATAATGAAAAGAAAAGA
7957805 TTAGTAATAAAGATG
131 TTAGTAATAAAGATG
* *
7957820 TGTTTTTTTAGCGAACTCATAATCTCCTGGTCAAAATCTTAAATTGAGAATTTGATGAAAAATCT
1 TGTTTTTTTAGCGAACTCATAATCTCATGATCAAAATCTTAAATTGAGAATTTGATGAAAAATCT
*
7957885 TGTACATCATCTCTTGTATAATCATTTATTCTTGTGCACTTTTGAGACATAATGAAAAGAAAAGA
66 TGTACATCATCTCTTGTATAATCATTTATTCTTGTGCACTTTCGAGACATAATGAAAAGAAAAGA
*
7957950 TTAGTATTAAA
131 TTAGTAATAAA
7957961 TATGAAAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 134 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.38
Consensus pattern (145 bp):
TGTTTTTTTAGCGAACTCATAATCTCATGATCAAAATCTTAAATTGAGAATTTGATGAAAAATCT
TGTACATCATCTCTTGTATAATCATTTATTCTTGTGCACTTTCGAGACATAATGAAAAGAAAAGA
TTAGTAATAAAGATG
Found at i:7960607 original size:35 final size:34
Alignment explanation
Indices: 7960487--7960624 Score: 114
Period size: 35 Copynumber: 3.9 Consensus size: 34
7960477 AAGTATCTTC
* * *
7960487 AGGTTCATCTCGATCAAATTGGTTATTCCTTATAT
1 AGGTTCAAC-CGATCAAACTGGTAATTCCTTATAT
*** * * **
7960522 AGGTTCATATTAATCAAATTGGTAATTCCATACGGT
1 AGGTTCA-ACCGATCAAACTGGTAATTCCTTA-TAT
*
7960558 AAGTTCAACTCGATCAAACTGGTAATTCCTTATAT
1 AGGTTCAAC-CGATCAAACTGGTAATTCCTTATAT
* *
7960593 AGGTTCAGACCGATCGAACTAGTAATTCCTTA
1 AGGTTCA-ACCGATCAAACTGGTAATTCCTTA
7960625 CGGATCAAAG
Statistics
Matches: 80, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
35 53 0.66
36 27 0.34
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (34 bp):
AGGTTCAACCGATCAAACTGGTAATTCCTTATAT
Found at i:7960618 original size:71 final size:71
Alignment explanation
Indices: 7960489--7960627 Score: 179
Period size: 71 Copynumber: 2.0 Consensus size: 71
7960479 GTATCTTCAG
* * * * ** * *
7960489 GTTCATCTCGATCAAATTGGTTATTCCTTATATAGGTTCATATTAATCAAATTGGTAATTCCATA
1 GTTCAACTCGATCAAACTGGTAATTCCTTATATAGGTTCAGACCAATCAAACTAGTAATTCCATA
7960554 CGGTAA
66 CGGTAA
* * *
7960560 GTTCAACTCGATCAAACTGGTAATTCCTTATATAGGTTCAGACCGATCGAACTAGTAATTCCTTA
1 GTTCAACTCGATCAAACTGGTAATTCCTTATATAGGTTCAGACCAATCAAACTAGTAATTCCATA
7960625 CGG
66 CGG
7960628 ATCAAAGGTG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (71 bp):
GTTCAACTCGATCAAACTGGTAATTCCTTATATAGGTTCAGACCAATCAAACTAGTAATTCCATA
CGGTAA
Found at i:7962920 original size:19 final size:19
Alignment explanation
Indices: 7962898--7962943 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
7962888 GAGTCAATCC
*
7962898 GACCTGACCCGTTGACTTT
1 GACCTAACCCGTTGACTTT
**
7962917 GACCTAACTTGTTGACTTT
1 GACCTAACCCGTTGACTTT
7962936 GACCTAAC
1 GACCTAAC
7962944 TTGTTGACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (19 bp):
GACCTAACCCGTTGACTTT
Found at i:7962944 original size:19 final size:19
Alignment explanation
Indices: 7962908--7962951 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
7962898 GACCTGACCC
7962908 GTTGACTTTGACCTAACTT
1 GTTGACTTTGACCTAACTT
7962927 GTTGACTTTGACCTAACTT
1 GTTGACTTTGACCTAACTT
7962946 GTTGAC
1 GTTGAC
7962952 CATTGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
GTTGACTTTGACCTAACTT
Found at i:7963421 original size:11 final size:11
Alignment explanation
Indices: 7963405--7963429 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7963395 CGGTTACCGA
7963405 ATATGACTTAG
1 ATATGACTTAG
7963416 ATATGACTTAG
1 ATATGACTTAG
7963427 ATA
1 ATA
7963430 ACTCGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (11 bp):
ATATGACTTAG
Found at i:7964773 original size:35 final size:35
Alignment explanation
Indices: 7964732--7964853 Score: 131
Period size: 35 Copynumber: 3.5 Consensus size: 35
7964722 CAGGTTCATT
* *
7964732 CGATCAAACTAGTAATTCTTTATATAGGTTCAGAC
1 CGATCAAACTTGTAATTCCTTATATAGGTTCAGAC
* * *
7964767 CGATCAAA-TTGTTGATCCCTTATGGA-AGGTTCAGAT
1 CGATCAAACTTG-TAATTCCTTAT--ATAGGTTCAGAC
* *
7964803 CGATCAAACTGGTAATTCCTTATATAGGTTCATAC
1 CGATCAAACTTGTAATTCCTTATATAGGTTCAGAC
*
7964838 CGATCGAACTTGTAAT
1 CGATCAAACTTGTAAT
7964854 GATACACGCA
Statistics
Matches: 70, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
34 3 0.04
35 38 0.54
36 26 0.37
37 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (35 bp):
CGATCAAACTTGTAATTCCTTATATAGGTTCAGAC
Found at i:7977839 original size:30 final size:30
Alignment explanation
Indices: 7977798--7977875 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
7977788 TTAAGGAGCT
* *
7977798 TCAAGTTAGCTGCAGGAGCTAGCATGTAGC
1 TCAACTTAGCTGGAGGAGCTAGCATGTAGC
7977828 TCAACTTAGCTGGAGGAGCTAGCATGTAGC
1 TCAACTTAGCTGGAGGAGCTAGCATGTAGC
7977858 TCAACTTAGCTGGAGGAG
1 TCAACTTAGCTGGAGGAG
7977876 AGCTTTAGAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (30 bp):
TCAACTTAGCTGGAGGAGCTAGCATGTAGC
Found at i:7978307 original size:19 final size:20
Alignment explanation
Indices: 7978283--7978331 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7978273 GCCAAGAGCA
*
7978283 TGTATTTTCATT-AAATTCG
1 TGTATTTTCATTAAAAATCG
*
7978302 TGTATTTTCATTAAAAATCT
1 TGTATTTTCATTAAAAATCG
7978322 TGTATTTTCA
1 TGTATTTTCA
7978332 AAGGGATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (20 bp):
TGTATTTTCATTAAAAATCG
Found at i:7986228 original size:16 final size:16
Alignment explanation
Indices: 7986207--7986237 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7986197 ACATGTAGCA
7986207 TGTCCAAATTCATCCT
1 TGTCCAAATTCATCCT
*
7986223 TGTCCATATTCATCC
1 TGTCCAAATTCATCC
7986238 CCCCATTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (16 bp):
TGTCCAAATTCATCCT
Found at i:7989584 original size:59 final size:60
Alignment explanation
Indices: 7989437--7989712 Score: 305
Period size: 58 Copynumber: 4.7 Consensus size: 60
7989427 TTTGTGTGAT
* * *
7989437 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATAT-GGAGCA-CTAAGTGTGCT-
1 AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGGAGCATTTAA-TGTGCTA
* *** *
7989495 AAATGATAAGGAAATCATATTGAAAATATAGATTTCCAGATAGG-GCATTTTATGTGCTA
1 AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGGAGCATTTAATGTGCTA
* * ** *
7989554 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATAT-GGAGCCCTGAATGTGCTA
1 AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGGAGCATTTAATGTGCTA
* * *** *
7989613 AAA-GATAAGGTAATCATATTGAAAATATAGATTTCCAGATAGG-GCATTTTATGTGCTA
1 AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGGAGCATTTAATGTGCTA
* *
7989671 AAATGGTAAGGGAATCATATTGAGTGTATGGATTTCCAGATA
1 AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATA
7989713 AAGTACTAAG
Statistics
Matches: 177, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
58 90 0.51
59 87 0.49
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (60 bp):
AAATGGTAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGGAGCATTTAATGTGCTA
Found at i:7989643 original size:117 final size:117
Alignment explanation
Indices: 7989437--7989748 Score: 500
Period size: 117 Copynumber: 2.7 Consensus size: 117
7989427 TTTGTGTGAT
*
7989437 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCTAAATGAT
1 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCTAAAAGAT
7989502 AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
66 AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
*
7989554 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCCCTGAA-TGTGCTAAAAGA
1 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACT-AAGTGTGCTAAAAGA
*
7989618 TAAGGTAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
65 TAAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
* * * * ** * *
7989671 AAATGGTAAGGGAATCATATTGAGTGTATGGATTTCCAGATAAAGTACTAAGGGTGCTACAAAGA
1 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCTA-AAAGA
7989736 TAAGGAAATCATA
65 TAAGGAAATCATA
7989749 CTAATGGTAT
Statistics
Matches: 179, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
116 2 0.01
117 158 0.88
118 19 0.11
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (117 bp):
AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCTAAAAGAT
AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
Found at i:7989728 original size:59 final size:58
Alignment explanation
Indices: 7989437--7989837 Score: 303
Period size: 59 Copynumber: 6.8 Consensus size: 58
7989427 TTTGTGTGAT
* * * *
7989437 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCT-
1 AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCACTAA-TGTGCTA
*** * * *
7989495 AAATGATAAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
1 AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCA-CTAATGTGCTA
* * * * *
7989554 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCCCTGAATGTGCTA
1 AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCACT-AATGTGCTA
* *** * * *
7989613 AAA-GATAAGGTAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
1 AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCA-CTAATGTGCTA
* * * * * *
7989671 AAATGGTAAGGGAATCATATTGAGTGTATGGATTTCCAGATAAAGTACTAAGGGTGCTA
1 AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCACTAA-TGTGCTA
* * * * * **
7989730 CAAA-GATAAGGAAATCATACT-AATGGTATGGATTTTC-GAATAGGGCACTTCGTGTGCTA
1 -AAATGATAAGGAAATCATATTGAGT-GTATAGATTTCCAG-ATAGAGCAC-TAATGTGCTA
* * * *
7989789 AAATGA-AACGGGAAGCATACTAAGTGTAT-GATCTTCCAGATAGAGCACT
1 AAATGATAA-GGAAATCATATTGAGTGTATAGAT-TTCCAGATAGAGCACT
7989838 GAGAGTGCTA
Statistics
Matches: 267, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
58 104 0.39
59 156 0.58
60 7 0.03
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (58 bp):
AAATGATAAGGAAATCATATTGAGTGTATAGATTTCCAGATAGAGCACTAATGTGCTA
Found at i:7989846 original size:118 final size:117
Alignment explanation
Indices: 7989437--7989848 Score: 483
Period size: 117 Copynumber: 3.5 Consensus size: 117
7989427 TTTGTGTGAT
* * * * *
7989437 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCACTAAGTGTGCTAAATGAT
1 AAATGGTAAGGGAATCATACTGAGTGTATAGATTTCCAGATAGAGCACTAAGAGTGCTAAAAGAT
7989502 AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
66 AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
* * * * *
7989554 AAATGGTAAGGAAATCATACTGAGTGTATAGATTTCCATATGGAGCCCTGAA-TGTGCTAAAAGA
1 AAATGGTAAGGGAATCATACTGAGTGTATAGATTTCCAGATAGAGCACT-AAGAGTGCTAAAAGA
*
7989618 TAAGGTAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
65 TAAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
* * * * *
7989671 AAATGGTAAGGGAATCATATTGAGTGTATGGATTTCCAGATAAAGTACTAAGGGTGCTACAAAGA
1 AAATGGTAAGGGAATCATACTGAGTGTATAGATTTCCAGATAGAGCACTAAGAGTGCTA-AAAGA
* ** * * * **
7989736 TAAGGAAATCATACT-AATGGTATGGATTTTC-GAATAGGGCACTTCGTGTGCTA
65 TAAGGAAATCATATTGAA-AATATAGATTTCCAG-ATAGGGCATTTTATGTGCTA
* * * *
7989789 AAAT-GAAACGGGAAGCATACTAAGTGTAT-GATCTTCCAGATAGAGCACTGAGAGTGCTAA
1 AAATGGTAA-GGGAATCATACTGAGTGTATAGAT-TTCCAGATAGAGCACTAAGAGTGCTAA
7989849 TATTAAAAGG
Statistics
Matches: 259, Mismatches: 29, Indels: 14
0.86 0.10 0.05
Matches are distributed among these distances:
116 2 0.01
117 168 0.65
118 89 0.34
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (117 bp):
AAATGGTAAGGGAATCATACTGAGTGTATAGATTTCCAGATAGAGCACTAAGAGTGCTAAAAGAT
AAGGAAATCATATTGAAAATATAGATTTCCAGATAGGGCATTTTATGTGCTA
Found at i:7990414 original size:23 final size:23
Alignment explanation
Indices: 7990385--7990429 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7990375 TATATTGTTT
** *
7990385 ACTGTTCACTGGTATTGTTCATC
1 ACTGTTCAAGGGTACTGTTCATC
7990408 ACTGTTCAAGGGTACTGTTCAT
1 ACTGTTCAAGGGTACTGTTCAT
7990430 ATGTATTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (23 bp):
ACTGTTCAAGGGTACTGTTCATC
Found at i:7995091 original size:2 final size:2
Alignment explanation
Indices: 7994986--7995082 Score: 194
Period size: 2 Copynumber: 48.5 Consensus size: 2
7994976 ACATTAAATC
7994986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7995028 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7995070 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
7995083 CAAATATATC
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 95 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7995913 original size:55 final size:55
Alignment explanation
Indices: 7995825--7996027 Score: 264
Period size: 55 Copynumber: 3.7 Consensus size: 55
7995815 AATTCACCTC
* * * * * *
7995825 CTTATTATGAATTTCTT-ATGTTTTCACATATAGTTCTCAAACGGAAATTCATACA
1 CTTAGTATGAATTTCTTAAT-TTTGCACACATAGTGCCCATACGGAAATTCATACA
* * *
7995880 CTTAGTATAAATTTCTTAATTTTGCACACATAGTGCCCTTACGAAAATTCATACA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACA
* *
7995935 CTTAGTATGAATTTCTTAATTTTACACACATAGTGCCCATACGGAAGTTCATACA
1 CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACA
*
7995990 CTTAGTATGAATTTCTTAACTTTATGCACACAAAGTGC
1 CTTAGTATGAATTTCTTAA-TTT-TGCACACATAGTGC
7996028 AATTTGGTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
55 112 0.87
56 5 0.04
57 12 0.09
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (55 bp):
CTTAGTATGAATTTCTTAATTTTGCACACATAGTGCCCATACGGAAATTCATACA
Found at i:7995986 original size:110 final size:112
Alignment explanation
Indices: 7995825--7996027 Score: 295
Period size: 110 Copynumber: 1.8 Consensus size: 112
7995815 AATTCACCTC
* * * * *
7995825 CTTATTATGAATTTCTTATGTTTTCACATATAGTTCTCAAACGGAAATTCATACACTTAGTATAA
1 CTTAGTATGAATTTCTTATGTTTACACACATAGTGCCCAAACGGAAATTCATACACTTAGTATAA
*
7995890 ATTTCTTAA-TTT-TGCACACATAGTGCCCTTACGAAAATTCATACA
66 ATTTCTTAACTTTATGCACACAAAGTGCCCTTACGAAAATTCATACA
* * *
7995935 CTTAGTATGAATTTCTTAAT-TTTACACACATAGTGCCCATACGGAAGTTCATACACTTAGTATG
1 CTTAGTATGAATTTCTT-ATGTTTACACACATAGTGCCCAAACGGAAATTCATACACTTAGTATA
7995999 AATTTCTTAACTTTATGCACACAAAGTGC
65 AATTTCTTAACTTTATGCACACAAAGTGC
7996028 AATTTGGTAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
110 63 0.78
111 5 0.06
112 13 0.16
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (112 bp):
CTTAGTATGAATTTCTTATGTTTACACACATAGTGCCCAAACGGAAATTCATACACTTAGTATAA
ATTTCTTAACTTTATGCACACAAAGTGCCCTTACGAAAATTCATACA
Found at i:8004973 original size:30 final size:30
Alignment explanation
Indices: 8004937--8005008 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
8004927 CGAGCTTGGT
*
8004937 GGTGGAAGGTATGCTCCCTTTCACCTAGGG
1 GGTGGAAGGTATGCTCCCTTTCACCTAGAG
8004967 GGTGGAAGGTATGCTCCCTTTCACCTAGAG
1 GGTGGAAGGTATGCTCCCTTTCACCTAGAG
*
8004997 TGTGGAACGGTA
1 GGTGGAA-GGTA
8005009 GTTGTGATGA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 35 0.90
31 4 0.10
ACGTcount: A:0.19, C:0.21, G:0.33, T:0.26
Consensus pattern (30 bp):
GGTGGAAGGTATGCTCCCTTTCACCTAGAG
Found at i:8007483 original size:22 final size:21
Alignment explanation
Indices: 8007456--8007506 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
8007446 AATTTTTTGT
8007456 TAATAAAACAATATAATAATAA
1 TAATAAAACAATA-AATAATAA
* *
8007478 TAATAAATATAATAATTAATAA
1 TAATAAA-ACAATAAATAATAA
8007500 TAA-AAAA
1 TAATAAAA
8007507 GACCCGGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 3 0.12
22 17 0.65
23 5 0.19
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
TAATAAAACAATAAATAATAA
Found at i:8007500 original size:19 final size:19
Alignment explanation
Indices: 8007455--8007503 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
8007445 TAATTTTTTG
*
8007455 TTAATAAAACAATATAATAA
1 TTAATAATA-AATATAATAA
8007475 -TAATAATAAATATAATAA
1 TTAATAATAAATATAATAA
8007493 TTAATAATAAA
1 TTAATAATAAA
8007504 AAAGACCCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAATAATAAATATAATAA
Found at i:8008955 original size:6 final size:6
Alignment explanation
Indices: 8008934--8009031 Score: 71
Period size: 6 Copynumber: 16.2 Consensus size: 6
8008924 CCTTTATTTA
*
8008934 TTTTCT TTTT-T CTTTCT TTTTCTAT TTTTCTT TTTTCTT TTTCTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTC--T TTTTC-T TTTTC-T TTT-TCT TTTTCT
* * *
8008986 TCTTT-T TCTTCT TTTT-T TTTTC- TTTT-G TTTTCT TTTTCT TCTTCT
1 T-TTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
8009031 T
1 T
8009032 CTTCAAGTGT
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
5 19 0.25
6 31 0.41
7 18 0.24
8 8 0.11
ACGTcount: A:0.01, C:0.17, G:0.01, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:8008963 original size:8 final size:7
Alignment explanation
Indices: 8008934--8009025 Score: 71
Period size: 8 Copynumber: 12.0 Consensus size: 7
8008924 CCTTTATTTA
8008934 TTTTCTT
1 TTTTCTT
8008941 TTTTCTTTCT
1 TTTTC--T-T
8008951 TTTTCTAT
1 TTTTCT-T
8008959 TTTTCTT
1 TTTTCTT
8008966 TTTTC-T
1 TTTTCTT
8008972 TTTTCTCT
1 TTTTCT-T
8008980 TTTTCTTCT
1 TTTTC-T-T
8008989 TTTTCTT
1 TTTTCTT
8008996 CTTTT-TT
1 -TTTTCTT
8009003 TTTTCTT
1 TTTTCTT
*
8009010 TTGTTTTCT
1 TT-TTCT-T
8009019 TTTTCTT
1 TTTTCTT
8009026 CTTCTTCTTC
Statistics
Matches: 72, Mismatches: 3, Indels: 20
0.76 0.03 0.21
Matches are distributed among these distances:
6 10 0.14
7 19 0.26
8 25 0.35
9 12 0.17
10 6 0.08
ACGTcount: A:0.01, C:0.16, G:0.01, T:0.82
Consensus pattern (7 bp):
TTTTCTT
Found at i:8008972 original size:21 final size:21
Alignment explanation
Indices: 8008946--8009011 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 21
8008936 TTCTTTTTTC
8008946 TTTCTTTTTCTATTTTTCTTT
1 TTTCTTTTTCTATTTTTCTTT
*
8008967 TTTCTTTTTCTCTTTTTCTTCTT
1 TTTCTTTTTCTATTTTTC-T-TT
*
8008990 TTTCTTCTTT-TTTTTTTCTTT
1 TTTCTT-TTTCTATTTTTCTTT
8009011 T
1 T
8009012 GTTTTCTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
21 20 0.50
22 2 0.05
23 15 0.38
24 3 0.08
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTCTTTTTCTATTTTTCTTT
Found at i:8008994 original size:30 final size:31
Alignment explanation
Indices: 8008934--8009034 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 31
8008924 CCTTTATTTA
*
8008934 TTTTCTTTTTTCTTTCTTTTTC-TATTTTTCTT-
1 TTTTC-TTTTTC--TCTTTTTCTTCTTTTTCTTC
8008966 TTTTCTTTTTCTCTTTTTCTTCTTTTTCTTC
1 TTTTCTTTTTCTCTTTTTCTTCTTTTTCTTC
*
8008997 TTTT-TTTTT-TCTTTTGTTTTCTTTTTCTTC
1 TTTTCTTTTTCTCTTTT-TCTTCTTTTTCTTC
8009027 TTCTTCTT
1 TT-TTCTT
8009035 CAAGTGTAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 10
0.84 0.03 0.14
Matches are distributed among these distances:
29 14 0.23
30 29 0.47
31 12 0.19
32 7 0.11
ACGTcount: A:0.01, C:0.18, G:0.01, T:0.80
Consensus pattern (31 bp):
TTTTCTTTTTCTCTTTTTCTTCTTTTTCTTC
Found at i:8009001 original size:39 final size:38
Alignment explanation
Indices: 8008934--8009035 Score: 129
Period size: 39 Copynumber: 2.7 Consensus size: 38
8008924 CCTTTATTTA
8008934 TTTTCT-TTTTTCTTTCTTTTTCTAT-TTTTCTTTTTTC-T
1 TTTTCTCTTTTTC-TTCTTTTTCT-TCTTTT-TTTTTTCTT
8008972 TTTTCTCTTTTTCTTCTTTTTCTTCTTTTTTTTTTCTT
1 TTTTCTCTTTTTCTTCTTTTTCTTCTTTTTTTTTTCTT
* *
8009010 TTGTTTTCTTTTTCTTCTTCTTCTTC
1 TT-TTCTCTTTTTCTTCTTTTTCTTC
8009036 AAGTGTAATG
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
37 8 0.14
38 23 0.40
39 27 0.47
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.79
Consensus pattern (38 bp):
TTTTCTCTTTTTCTTCTTTTTCTTCTTTTTTTTTTCTT
Found at i:8012592 original size:16 final size:18
Alignment explanation
Indices: 8012571--8012604 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
8012561 TAATTATCAA
8012571 TAAAGAA-TAAA-GAGAT
1 TAAAGAATTAAATGAGAT
8012587 TAAAGAATTAAATGAGAT
1 TAAAGAATTAAATGAGAT
8012605 ATTTGGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.24
Consensus pattern (18 bp):
TAAAGAATTAAATGAGAT
Found at i:8016135 original size:30 final size:30
Alignment explanation
Indices: 8016099--8016161 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
8016089 TTAAATGTGA
*
8016099 ATGCATATTAATGGTAATGTGTTATAAACG
1 ATGCATATTAATGGTAATGCGTTATAAACG
** *
8016129 ATGCATATTTTTGGTAATGCGTTATAAATG
1 ATGCATATTAATGGTAATGCGTTATAAACG
8016159 ATG
1 ATG
8016162 AATTTATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (30 bp):
ATGCATATTAATGGTAATGCGTTATAAACG
Found at i:8020378 original size:26 final size:26
Alignment explanation
Indices: 8020348--8020401 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
8020338 ATAAAATGAA
*
8020348 ATAAAAATATTATGATTT-AAGTTGAT
1 ATAAAAATATT-TGATTTCAAGTTCAT
* *
8020374 ATAAAGATATTTGTTTTCAAGTTCAT
1 ATAAAAATATTTGATTTCAAGTTCAT
8020400 AT
1 AT
8020402 TCTACTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.41, C:0.04, G:0.11, T:0.44
Consensus pattern (26 bp):
ATAAAAATATTTGATTTCAAGTTCAT
Found at i:8020649 original size:2 final size:2
Alignment explanation
Indices: 8020608--8020640 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8020598 ACATTAAATC
8020608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8020641 CAAATATATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8022279 original size:3 final size:3
Alignment explanation
Indices: 8022261--8022311 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
8022251 AATTTTTTGT
*
8022261 TAA TAA -AA TAA T-A TAA TAA TAA CAA TAA TTAA T-A TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
8022304 TTAA TAA T
1 -TAA TAA T
8022312 GAAAAAGATC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 6 0.15
3 29 0.71
4 6 0.15
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8026852 original size:61 final size:65
Alignment explanation
Indices: 8026757--8026883 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 65
8026747 AGATATGCAG
8026757 CAGCAGGGCATGAAACCAACGGTGAACTCCATAAAGAATTAG-ATA-T-TT-TGATGATGTTCCC
1 CAGCAGGGCATGAAACCAACGGTGAACTCCATAAAGAATTAGTATATTATTATGATGATGTTCCC
8026818 CAGCAGGGCATGAAACCAACGGTGAACTCCATAAAGAATTAGTATATTATTATGATGATGTTCCC
1 CAGCAGGGCATGAAACCAACGGTGAACTCCATAAAGAATTAGTATATTATTATGATGATGTTCCC
8026883 C
1 C
8026884 TCTCTTATAA
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
61 42 0.68
62 3 0.05
63 1 0.02
64 2 0.03
65 14 0.23
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (65 bp):
CAGCAGGGCATGAAACCAACGGTGAACTCCATAAAGAATTAGTATATTATTATGATGATGTTCCC
Found at i:8041894 original size:20 final size:19
Alignment explanation
Indices: 8041867--8041915 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
8041857 GATGTACTAT
*
8041867 AATG-GAAATTAATGTTTG
1 AATGTGAAATTAATGTTAG
* *
8041885 AGTGTTGAAATTGATGTTAG
1 AATG-TGAAATTAATGTTAG
8041905 AATGTGAAATT
1 AATGTGAAATT
8041916 TGATTATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 3 0.12
19 7 0.28
20 15 0.60
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (19 bp):
AATGTGAAATTAATGTTAG
Found at i:8043345 original size:64 final size:64
Alignment explanation
Indices: 8043241--8043362 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 64
8043231 TCAGATTAGC
* * * *
8043241 ACTATAGTGTGTAAGGACACTTACAGCAGCATTATGGTGTGTAAGAACACTTAGTGCATACGGT
1 ACTATAGTGTGTAAGGACACTTACAGCAACACTATAGTGTGTAAGAACACTCAGTGCATACGGT
* *
8043305 ACTATAGTGTGTAAGGACACTTACTA-CAACACTGTAGTGTGTAAGGACACTCAGTGCA
1 ACTATAGTGTGTAAGGACACTTAC-AGCAACACTATAGTGTGTAAGAACACTCAGTGCA
8043363 GCACTGTGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
64 50 0.98
65 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (64 bp):
ACTATAGTGTGTAAGGACACTTACAGCAACACTATAGTGTGTAAGAACACTCAGTGCATACGGT
Found at i:8043391 original size:30 final size:30
Alignment explanation
Indices: 8043238--8043392 Score: 157
Period size: 30 Copynumber: 5.0 Consensus size: 30
8043228 TAATCAGATT
**
8043238 AGCACTATAGTGTGTAAGGACACTTACAGC
1 AGCACTATAGTGTGTAAGGACACTTAGTGC
* * *
8043268 AGCATTATGGTGTGTAAGAACACTTAGTGC
1 AGCACTATAGTGTGTAAGGACACTTAGTGC
* * *
8043298 ATACGGTACTATAGTGTGTAAGGACACTTACTAC
1 --A--GCACTATAGTGTGTAAGGACACTTAGTGC
* * *
8043332 AACACTGTAGTGTGTAAGGACACTCAGTGC
1 AGCACTATAGTGTGTAAGGACACTTAGTGC
* *
8043362 AGCACTGTGGTGTGTAAGGACACTTAGTGC
1 AGCACTATAGTGTGTAAGGACACTTAGTGC
8043392 A
1 A
8043393 TATGGTAAGC
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
30 76 0.75
32 2 0.02
34 23 0.23
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (30 bp):
AGCACTATAGTGTGTAAGGACACTTAGTGC
Found at i:8043949 original size:12 final size:12
Alignment explanation
Indices: 8043919--8043949 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8043909 CTAAACATGC
*
8043919 TTTAAAAGGTAT
1 TTTAAATGGTAT
8043931 TTTAAATGGTAT
1 TTTAAATGGTAT
8043943 TTTAAAT
1 TTTAAAT
8043950 TAGATAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (12 bp):
TTTAAATGGTAT
Found at i:8047645 original size:39 final size:39
Alignment explanation
Indices: 8047587--8047864 Score: 335
Period size: 39 Copynumber: 7.1 Consensus size: 39
8047577 ATCTGCAGTA
* * * * *
8047587 AAGGACTTACCCTGTGCACAAAGCAGAGGAGCCTACGAT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
* * * *
8047626 AAGGACTTACCCTGAGCACAAAACTGAGGAGCCTGAGGT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
*
8047665 AAGGACTTACCCTGAGCATAAAGCCGAAGAGCCTGCGGT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
* *
8047704 AAGGACTTACCCTGAGCACAAAGCTGAAGAGCCTGCGAT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
* * *
8047743 AAGGACTTACCCTAAGCACAAAGTCGAAGAG-ATGGCGGT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCT-GCGGT
* * *
8047782 AAGGACTTACCCTAAGCATAAAGCCGAGGAGCCTGCGGT
1 AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
* * *
8047821 AATGACTTACCCTGAGTACAAAGCC-AATGAGCCTGCAGT
1 AAGGACTTACCCTGAGCACAAAGCCGAA-GAGCCTGCGGT
8047860 AAGGA
1 AAGGA
8047865 ATTATAAGTC
Statistics
Matches: 206, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
38 2 0.01
39 203 0.99
40 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.27, T:0.16
Consensus pattern (39 bp):
AAGGACTTACCCTGAGCACAAAGCCGAAGAGCCTGCGGT
Found at i:8048298 original size:3 final size:3
Alignment explanation
Indices: 8048290--8048322 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8048280 TCCTAATATG
8048290 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8048323 CCCTATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8049255 original size:30 final size:30
Alignment explanation
Indices: 8049197--8049255 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
8049187 GTTTGGATCT
* * *
8049197 AAATTTAATCAAAATTTCATTTTGGTCCTC
1 AAATTTAATCAAAATTTAAATTTAGTCCTC
*
8049227 AAATTTAATTAAAATTTAAATTTAGTCCT
1 AAATTTAATCAAAATTTAAATTTAGTCCT
8049256 TGAAAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (30 bp):
AAATTTAATCAAAATTTAAATTTAGTCCTC
Found at i:8052149 original size:30 final size:30
Alignment explanation
Indices: 8052105--8052254 Score: 129
Period size: 30 Copynumber: 4.9 Consensus size: 30
8052095 GGATTAGATA
*
8052105 TATAGTGTGAAAGGACACTTAGTGCAGCAC
1 TATAGTGTGTAAGGACACTTAGTGCAGCAC
* * * *
8052135 TATGGTGTGTAAGGAAACTTAGTTCATATGGTAC
1 TATAGTGTGTAAGGACACTTAGTGC--A--GCAC
* * *
8052169 TATAATGTGTAAGGACACTTAGTACAACAC
1 TATAGTGTGTAAGGACACTTAGTGCAGCAC
* * * *
8052199 TATAGTGTGTAAGGACACTCATTGTAGCTC
1 TATAGTGTGTAAGGACACTTAGTGCAGCAC
* * *
8052229 TGTGGTGTGTAAGAACACTTAGTGCA
1 TATAGTGTGTAAGGACACTTAGTGCA
8052255 TATAGTAAGT
Statistics
Matches: 92, Mismatches: 24, Indels: 8
0.74 0.19 0.06
Matches are distributed among these distances:
30 66 0.72
32 2 0.02
34 24 0.26
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
TATAGTGTGTAAGGACACTTAGTGCAGCAC
Found at i:8055433 original size:49 final size:49
Alignment explanation
Indices: 8055375--8055596 Score: 295
Period size: 49 Copynumber: 4.6 Consensus size: 49
8055365 ATGCCTAACA
* *
8055375 GTGCATTTTTGGCAGAAAGTTGCCACTGATGCAAGTTAGATGAAAAATG
1 GTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAAAATG
* * *
8055424 GTGTATTTTTGGCAAAAAGGTGCCACTAATGCAAGTTGGATGAAAAATG
1 GTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAAAATG
* * * **
8055473 GTGCATTTTTGGCAGAAAGGTGACATTAATGCAAGTTAAATGCCTAAA-G
1 GTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATG-AAAAATG
* * *
8055522 GTGCATTTTTGGCAGAAATGTGTCACTCATGCAAGTTAGATGAAAAATG
1 GTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAAAATG
*
8055571 GTGCA-TTTTGGCAGAAAGGTGTCACT
1 GTGCATTTTTGGCAGAAAGGTGCCACT
8055597 CATGGTTTAA
Statistics
Matches: 150, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
48 23 0.15
49 124 0.83
50 3 0.02
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (49 bp):
GTGCATTTTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAAAATG
Found at i:8061919 original size:36 final size:36
Alignment explanation
Indices: 8061887--8062156 Score: 107
Period size: 36 Copynumber: 7.4 Consensus size: 36
8061877 AGAAACACTT
* * *
8061887 TTAAATGAGATAAGATTTATTTTAAGGAAAACAATA
1 TTAAATGAGATAAAATCTATTTTAAGAAAAACAATA
* * *
8061923 TTAAGTGAGATAAAATCTATTTTTAGAAAAACAATC
1 TTAAATGAGATAAAATCTATTTTAAGAAAAACAATA
* * * * * * *
8061959 TCAAGTAAGATAAAA---AATTTAATAAAAATAATC
1 TTAAATGAGATAAAATCTATTTTAAGAAAAACAATA
** * * * * * *
8061992 TCGATTGAGAAAAAATATGTTTTTAAGAAGAAAAAAACA
1 TTAAATGAGATAAAATCT-ATTTTAAG-A-AAAACAATA
* * * *
8062031 GTCTCAAGTGAGATAAAATTTGTTTTAAGGAAAACAATA
1 -T-T-AAATGAGATAAAATCTATTTTAAGAAAAACAATA
* * * * * *
8062070 TCAAGTGAGACAAAATATGTTTTAACGAAAAA-AATC
1 TTAAATGAGATAAAATCTATTTTAA-GAAAAACAATA
* * * * *
8062106 TCAAGTGAGATAAAATTTGTTTTAAGAAAAACAATC
1 TTAAATGAGATAAAATCTATTTTAAGAAAAACAATA
* *
8062142 TCAAGTGAGATAAAA
1 TTAAATGAGATAAAA
8062157 CCTTAAGTGA
Statistics
Matches: 185, Mismatches: 38, Indels: 22
0.76 0.16 0.09
Matches are distributed among these distances:
33 25 0.14
35 6 0.03
36 109 0.59
37 10 0.05
38 2 0.01
39 13 0.07
40 1 0.01
41 7 0.04
42 12 0.06
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (36 bp):
TTAAATGAGATAAAATCTATTTTAAGAAAAACAATA
Done.