Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009625.1 Hibiscus syriacus cultivar Beakdansim tig00117017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6938204
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 25
Found at i:984 original size:23 final size:23
Alignment explanation
Indices: 954--1013 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
944 TTCCCCTGTG
954 GGGGGAATCGGTTCCCCTTCA-AA
1 GGGGGAATCGGTTCCCC-TCATAA
*
977 GGGGGAATCGGTT-CCCTCATGA
1 GGGGGAATCGGTTCCCCTCATAA
999 GGGGG-ATCGGTTCCC
1 GGGGGAATCGGTTCCC
1014 TCTGCACCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
21 10 0.29
22 11 0.32
23 13 0.38
ACGTcount: A:0.17, C:0.25, G:0.37, T:0.22
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTCATAA
Found at i:1007 original size:21 final size:21
Alignment explanation
Indices: 954--1015 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
944 TTCCCCTGTG
954 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
977 GGGGGAATCGGTTCCCTCATGA
1 GGGGGAATCGGTTCCCTCA-AA
999 GGGGG-ATCGGTTCCCTC
1 GGGGGAATCGGTTCCCTC
1016 TGCACCAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 15 0.41
22 9 0.24
23 13 0.35
ACGTcount: A:0.16, C:0.26, G:0.35, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:15307 original size:2 final size:2
Alignment explanation
Indices: 15300--15360 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
15290 AGCTATATTC
15300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15342 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
15361 CTACATCTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15878 original size:20 final size:20
Alignment explanation
Indices: 15843--15880 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15833 CACCTATGGC
*
15843 CACCTTATATCCAGCTCATT
1 CACCTTATAACCAGCTCATT
*
15863 CACCTTATAACTAGCTCA
1 CACCTTATAACCAGCTCA
15881 AACATGAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.05, T:0.32
Consensus pattern (20 bp):
CACCTTATAACCAGCTCATT
Found at i:22522 original size:24 final size:22
Alignment explanation
Indices: 22491--22535 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
22481 AAATTTGACA
22491 TAACTGTTTACTT-TGACTAAATT
1 TAACTG-TTA-TTGTGACTAAATT
22514 TAACGTGTTATTGTGACTAAAT
1 TAAC-TGTTATTGTGACTAAAT
22536 CACTTTGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 2 0.10
23 16 0.80
24 2 0.10
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (22 bp):
TAACTGTTATTGTGACTAAATT
Found at i:24312 original size:17 final size:17
Alignment explanation
Indices: 24274--24313 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
24264 TATTACATGT
*
24274 TATG-TGATATGTATTA
1 TATGATGATATGCATTA
24290 -AT-ATGATATGCATTA
1 TATGATGATATGCATTA
24305 TATGATGAT
1 TATGATGAT
24314 GATTTGGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
15 13 0.65
16 2 0.10
17 5 0.25
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (17 bp):
TATGATGATATGCATTA
Found at i:36136 original size:46 final size:46
Alignment explanation
Indices: 36079--36369 Score: 442
Period size: 46 Copynumber: 6.3 Consensus size: 46
36069 TTCATTTATA
* * * *
36079 CATTTAAATTATAGAAACCTTTCATGCCTTAATGCATCATTTCATG
1 CATTTTAATTATGGAATCCTTTCATGCCTTAATGCATCCTTTCATG
* *
36125 CATTTTAATTATGGATTCCTTTCATGCCTTAATGAATCCTTTCATG
1 CATTTTAATTATGGAATCCTTTCATGCCTTAATGCATCCTTTCATG
* * *
36171 CATTTTAATTCT-GACATCCTTTCATGCCTTAATGCCTCATTTCATG
1 CATTTTAATTATGGA-ATCCTTTCATGCCTTAATGCATCCTTTCATG
*
36217 CATTTTAATTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATG
1 CATTTTAATTATGGAATCCTTTCATGCCTTAATGCATCCTTTCATG
*
36263 CATTTTAATTATGGCATCCTTTCATGCCTTAATGCATCCTTTCATG
1 CATTTTAATTATGGAATCCTTTCATGCCTTAATGCATCCTTTCATG
*
36309 CATTTTAATTAT-GACATCCTTTCATGCCTTAGTGCATCCTTTCATG
1 CATTTTAATTATGGA-ATCCTTTCATGCCTTAATGCATCCTTTCATG
36355 CATTTTAATTATGGA
1 CATTTTAATTATGGA
36370 TCCAATTTAC
Statistics
Matches: 224, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
45 3 0.01
46 218 0.97
47 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.43
Consensus pattern (46 bp):
CATTTTAATTATGGAATCCTTTCATGCCTTAATGCATCCTTTCATG
Found at i:36785 original size:20 final size:22
Alignment explanation
Indices: 36760--36805 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
36750 TTAATAGTAT
*
36760 CGATACTACTA-CCT-TGGTAC
1 CGATACTACTATACTATGGTAC
*
36780 CGATACTTCTATACTATGGTAC
1 CGATACTACTATACTATGGTAC
36802 CGAT
1 CGAT
36806 TCCCCCTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 2 0.09
22 10 0.45
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (22 bp):
CGATACTACTATACTATGGTAC
Found at i:38143 original size:56 final size:56
Alignment explanation
Indices: 38048--38183 Score: 200
Period size: 56 Copynumber: 2.4 Consensus size: 56
38038 GACAGGCTGT
* * ** *
38048 ATATTCGGGATTGTACTAAAGTATTAGTGTATATAGTGGGCACAACCTTATGTGTC
1 ATATTCGAGATTGCACTAAAGTATTAGTACATATAGTGGGCACAACCTTAAGTGTC
*
38104 ATATTCGAGATTGCACTAAAGTATTAGTACATATGGTGGGCACAACCTTAAGTGTC
1 ATATTCGAGATTGCACTAAAGTATTAGTACATATAGTGGGCACAACCTTAAGTGTC
* *
38160 ATATTCGAGACTACACTAAAGTAT
1 ATATTCGAGATTGCACTAAAGTAT
38184 AACTAGTGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (56 bp):
ATATTCGAGATTGCACTAAAGTATTAGTACATATAGTGGGCACAACCTTAAGTGTC
Found at i:38748 original size:19 final size:19
Alignment explanation
Indices: 38704--38768 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 19
38694 AATATAGTTC
38704 ATATTAAATATAATTAATA
1 ATATTAAATATAATTAATA
* *
38723 ATA-TAAA-ATAATATTATG
1 ATATTAAATATAAT-TAATA
*
38741 ATATTAAACTATACTTAAATA
1 ATATTAAA-TATAATT-AATA
*
38762 AAATTAA
1 ATATTAA
38769 TTTGGGTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 5 0.14
18 10 0.29
19 7 0.20
20 1 0.03
21 12 0.34
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATTAAATATAATTAATA
Found at i:57200 original size:28 final size:28
Alignment explanation
Indices: 57160--57217 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
57150 TTTGGATTGA
57160 TTTATTTTGGATGTTTGAATGCTTGAAT
1 TTTATTTTGGATGTTTGAATGCTTGAAT
* *
57188 TTTATTTTGGATGTTTGGATGTTTGAAT
1 TTTATTTTGGATGTTTGAATGCTTGAAT
57216 TT
1 TT
57218 GAATGCTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.19, C:0.02, G:0.22, T:0.57
Consensus pattern (28 bp):
TTTATTTTGGATGTTTGAATGCTTGAAT
Found at i:58756 original size:30 final size:31
Alignment explanation
Indices: 58722--58788 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
58712 GGAAATTTTT
58722 AACTTTT-TAAA-ATTACTATTTTGGTC-CCTA
1 AACTTTTCTAAAGATTA-TATTTTGGTCACC-A
* *
58752 AACTTTTCTAAAGTTTATATTTTTGTCACCA
1 AACTTTTCTAAAGATTATATTTTGGTCACCA
58783 AACTTT
1 AACTTT
58789 AAAATTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 7 0.22
31 20 0.62
32 5 0.16
ACGTcount: A:0.30, C:0.16, G:0.06, T:0.48
Consensus pattern (31 bp):
AACTTTTCTAAAGATTATATTTTGGTCACCA
Found at i:59121 original size:3 final size:3
Alignment explanation
Indices: 59115--59171 Score: 51
Period size: 3 Copynumber: 17.7 Consensus size: 3
59105 ATGTTACTAC
* *
59115 TTA TTA TTA TATA TTA TTA TTTA TTA TAA TTG TTA TTTA TTA CTTA TTA
1 TTA TTA TTA T-TA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA -TTA TTA
*
59164 TTA CTA TT
1 TTA TTA TT
59172 TTTTTTTTCA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 32 0.73
4 12 0.27
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:59171 original size:20 final size:19
Alignment explanation
Indices: 59112--59172 Score: 50
Period size: 20 Copynumber: 2.9 Consensus size: 19
59102 TTTATGTTAC
59112 TACTTATTATTATATATTAT
1 TACTTATTATTATAT-TTAT
* *
59132 TATTTATTATAATTGTTATTTAT
1 TACTTA-T-T-ATT-ATATTTAT
59155 TACTTATTATTACTATTT
1 TACTTATTATTA-TATTT
59173 TTTTTTTCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
20 13 0.41
21 2 0.06
22 2 0.06
23 12 0.38
24 3 0.09
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (19 bp):
TACTTATTATTATATTTAT
Found at i:60580 original size:23 final size:23
Alignment explanation
Indices: 60542--60600 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
60532 CGTCCGTCTT
*
60542 CCTTCTAGAA-TTGTTGACTT-GA
1 CCTTCTAGAAGCTGTTGA-TTGGA
* *
60564 TCTTCTGGAAGCTGTTGATTGGA
1 CCTTCTAGAAGCTGTTGATTGGA
60587 CCTTCTAGAAGCTG
1 CCTTCTAGAAGCTG
60601 CAGACGAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 10 0.33
23 20 0.67
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (23 bp):
CCTTCTAGAAGCTGTTGATTGGA
Found at i:63222 original size:20 final size:21
Alignment explanation
Indices: 63197--63237 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
63187 TAATTTAATA
63197 TAGGATGATG-CATTATTTTT
1 TAGGATGATGTCATTATTTTT
*
63217 TAGGATTATGTTCATTATTTT
1 TAGGATGATG-TCATTATTTT
63238 ATTATGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.54
Consensus pattern (21 bp):
TAGGATGATGTCATTATTTTT
Found at i:65686 original size:21 final size:21
Alignment explanation
Indices: 65662--65705 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
65652 TCAGAGACAT
*
65662 TTACCAAGGTACTTCATCTAC
1 TTACCAAGGTAATTCATCTAC
*
65683 TTACCAAGGTAATTCATTTAC
1 TTACCAAGGTAATTCATCTAC
65704 TT
1 TT
65706 CAACTTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (21 bp):
TTACCAAGGTAATTCATCTAC
Found at i:71682 original size:22 final size:22
Alignment explanation
Indices: 71657--71699 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
71647 ACTGATCGTT
* *
71657 ACATATGATGTTTATCATGAAC
1 ACATATGATATTTAACATGAAC
71679 ACATATGATATTTAACATGAA
1 ACATATGATATTTAACATGAA
71700 TGATATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (22 bp):
ACATATGATATTTAACATGAAC
Found at i:85064 original size:13 final size:13
Alignment explanation
Indices: 85046--85093 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
85036 AGAATTGTGA
85046 AAAGAAAATAATG
1 AAAGAAAATAATG
*
85059 AAAGAAAATAAAG
1 AAAGAAAATAATG
*
85072 AAAG-ATATAGATG
1 AAAGAAAATA-ATG
85085 AAA-AAAATA
1 AAAGAAAATA
85094 GTAGTTCAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 4 0.14
13 25 0.86
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAGAAAATAATG
Found at i:86573 original size:3 final size:3
Alignment explanation
Indices: 86565--86619 Score: 87
Period size: 3 Copynumber: 18.7 Consensus size: 3
86555 AAAAACTATA
86565 AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT AA- AAT AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
86609 AAT AAT AAT AA
1 AAT AAT AAT AA
86620 AATGGGTTAC
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.08
3 42 0.86
4 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:86586 original size:19 final size:19
Alignment explanation
Indices: 86562--86620 Score: 97
Period size: 19 Copynumber: 3.3 Consensus size: 19
86552 CCTAAAAACT
86562 ATAAATAATAATAATAATA
1 ATAAATAATAATAATAATA
86581 ATAAATAATAATAATAA-A
1 ATAAATAATAATAATAATA
86599 AT-AATAATAA-AATAATA
1 ATAAATAATAATAATAATA
86616 ATAAA
1 ATAAA
86621 ATGGGTTACT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.13
17 11 0.29
18 5 0.13
19 17 0.45
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
ATAAATAATAATAATAATA
Found at i:86620 original size:22 final size:21
Alignment explanation
Indices: 86564--86622 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 21
86554 TAAAAACTAT
86564 AAATAATAATAATAATAATAAA
1 AAATAATAATAA-AATAATAAA
*
86586 TAATAATAATAAAATAATAATA
1 AAATAATAATAAAATAATAA-A
86608 AAATAATAATAAAAT
1 AAATAATAATAAAAT
86623 GGGTTACTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 8 0.24
22 26 0.76
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
AAATAATAATAAAATAATAAA
Found at i:88194 original size:21 final size:21
Alignment explanation
Indices: 88169--88209 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
88159 TATTTTAAAT
88169 TATATTT-TTTTATTTATTTAC
1 TATATTTCTTTT-TTTATTTAC
88190 TATATTTCTTTTTTTATTTA
1 TATATTTCTTTTTTTATTTA
88210 TATTATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (21 bp):
TATATTTCTTTTTTTATTTAC
Found at i:88216 original size:23 final size:23
Alignment explanation
Indices: 88162--88242 Score: 69
Period size: 25 Copynumber: 3.5 Consensus size: 23
88152 ATATATATAT
*
88162 TTTAAATTATATTTTTTTATTTA
1 TTTATATTATATTTTTTTATTTA
*
88185 TTTACTA-TAT-TTCTTTT-TTTA
1 TTTA-TATTATATTTTTTTATTTA
*
88206 TTTATATTATATTATTTATATTATA
1 TTTATATTATATT-TTTTTATT-TA
* *
88231 TATATCTTATAT
1 TTTATATTATAT
88243 AAATATATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
20 2 0.04
21 11 0.24
22 8 0.17
23 10 0.22
24 3 0.07
25 12 0.26
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTATATTATATTTTTTTATTTA
Found at i:88234 original size:2 final size:2
Alignment explanation
Indices: 88208--88272 Score: 75
Period size: 2 Copynumber: 34.5 Consensus size: 2
88198 TTTTTTTATT
* * *
88208 TA TA T- TA TA T- TA TT TA TA T- TA TA TA TA TC T- TA TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
88246 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
88273 TTATGTATAG
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
1 4 0.07
2 50 0.93
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:90523 original size:7 final size:7
Alignment explanation
Indices: 90506--90539 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
90496 GAACATTTCA
90506 TGCATTTT
1 TGCA-TTT
90514 TGCATTT
1 TGCATTT
90521 TGCATTT
1 TGCATTT
90528 TGCATTT
1 TGCATTT
90535 TGCAT
1 TGCAT
90540 CTACATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (7 bp):
TGCATTT
Found at i:91718 original size:11 final size:11
Alignment explanation
Indices: 91699--91755 Score: 60
Period size: 11 Copynumber: 4.7 Consensus size: 11
91689 AGATTCAATC
*
91699 AGAACAAAAAG
1 AGAAAAAAAAG
91710 AGAAAAAAAAG
1 AGAAAAAAAAG
91721 AGAAAAAAGCAAAG
1 AG-AAAAA--AAAG
91735 AGAAAATAAAAAG
1 AG-AAA-AAAAAG
91748 AGAAAAAA
1 AGAAAAAA
91756 CAAAGGAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
11 15 0.37
12 8 0.20
13 6 0.15
14 10 0.24
15 2 0.05
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (11 bp):
AGAAAAAAAAG
Found at i:91734 original size:25 final size:25
Alignment explanation
Indices: 91706--91778 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 25
91696 ATCAGAACAA
91706 AAAGAGAAAAAAAAGAGAAAAAAGC
1 AAAGAGAAAAAAAAGAGAAAAAAGC
91731 AAAGAGAAAATAAAAAGAGAAAAAA-C
1 AAAGAG-AAA-AAAAAGAGAAAAAAGC
**
91757 AAAG-GAAAATTAA-AGAAAAAAG
1 AAAGAGAAAAAAAAGAGAAAAAAG
91779 AAAACAAGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
22 8 0.19
23 3 0.07
24 3 0.07
25 7 0.16
26 8 0.19
27 14 0.33
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (25 bp):
AAAGAGAAAAAAAAGAGAAAAAAGC
Found at i:91745 original size:27 final size:26
Alignment explanation
Indices: 91706--91766 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
91696 ATCAGAACAA
91706 AAAGAG-AAA-AAAAAGAGAAAAAAGC
1 AAAGAGAAAATAAAAAGAGAAAAAA-C
91731 AAAGAGAAAATAAAAAGAGAAAAAAC
1 AAAGAGAAAATAAAAAGAGAAAAAAC
91757 AAAG-GAAAAT
1 AAAGAGAAAAT
91767 TAAAGAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
25 12 0.35
26 8 0.24
27 14 0.41
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.03
Consensus pattern (26 bp):
AAAGAGAAAATAAAAAGAGAAAAAAC
Found at i:91957 original size:69 final size:69
Alignment explanation
Indices: 91838--91972 Score: 211
Period size: 69 Copynumber: 2.0 Consensus size: 69
91828 GATTCAAACT
*
91838 ATGAGATTGATCAAGCACAATCATTTTCGAATCATTGAACCACTTCACTCGAAGATCATAGAGCA
1 ATGAGATTGATCAAGCACAATCATTTTCGAATCACTGAACCACTTCACTCGAAGATCATAGAGCA
91903 TTAA
66 TTAA
* *
91907 ATGAGATTGATCAAGCACGATCA-TTTCTGAATCACTGAATCAC-TCAACTCGAAGATCATAGAG
1 ATGAGATTGATCAAGCACAATCATTTTC-GAATCACTGAACCACTTC-ACTCGAAGATCATAGAG
91970 CAT
64 CAT
91973 CAAGAGAGAG
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
68 6 0.10
69 55 0.90
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (69 bp):
ATGAGATTGATCAAGCACAATCATTTTCGAATCACTGAACCACTTCACTCGAAGATCATAGAGCA
TTAA
Found at i:93550 original size:36 final size:36
Alignment explanation
Indices: 93503--93830 Score: 224
Period size: 36 Copynumber: 9.4 Consensus size: 36
93493 ATTTAAAACA
* *
93503 TTTCCCTTGAAACGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
93539 TTTCCCTTGAAACAAAATTTTGTCTC-CGTTGAGACAG
1 TTTCCCTTGAAAC-AAATTTTGTCTCTC-TTGAGACAG
** * * *
93576 TTTTTCTTGAAACATAA-------AC-ATTGAAAACA-
1 TTTCCCTTGAAACA-AATTTTGTCTCTCTTG-AGACAG
* * *
93605 TTTCCCGTGAAATAAATTTTGTCACTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
*
93641 TTTCCCATGAAACAAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
* * *
93677 TTTCCCTTGAAACAAA-----T-TAT-TT-AAATATG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA-G
*** ** *
93706 TTTTATTTGAAACAAATTTCATCTCGCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
** * * *
93742 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTCAGACAG
1 TTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGACAG
* * *
93779 TTTCTCTTGAAATAAATTTCGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
93815 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
93831 ATATTTGAAT
Statistics
Matches: 226, Mismatches: 43, Indels: 46
0.72 0.14 0.15
Matches are distributed among these distances:
28 5 0.02
29 29 0.13
30 7 0.03
31 1 0.00
34 1 0.00
35 7 0.03
36 113 0.50
37 63 0.28
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAG
Found at i:93592 original size:102 final size:101
Alignment explanation
Indices: 93416--93790 Score: 403
Period size: 102 Copynumber: 3.7 Consensus size: 101
93406 TAAAAAGAAG
* * * *
93416 ATTTTATCTCGCTTGAGATAGTTTCCCTTGAAACAAAATATTGTCTCCCTTGAGATAGTTTCTCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCT-CCTTGAGACAGTTTCTCT
* * *
93481 TGAAACATAAACATTTAAAACATTTCCCTTGAAACGA
65 TGAAACATAAACATTGAAAACATTTCCCGTGAAACAA
*
93518 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCGTTGAGACAGTTTTTCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCC-TTGAGACAGTTTCTCT
*
93583 TGAAACATAAACATTGAAAACATTTCCCGTGAAATAA
65 TGAAACATAAACATTGAAAACATTTCCCGTGAAACAA
* * * *
93620 ATTTTGTCACTCTTGAGACAGTTTCCCATGAAAC-AAATTTTGTCTCTCTTGAGACAGTTTCCCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTC-CTTGAGACAGTTTCTCT
** * ** ****
93684 TGAAACA-AATTATTTAAATATGTTTTATTTGAAACAA
65 TGAAACATAAACATTGAAA-ACATTTCCCGTGAAACAA
** * * ** * * * *
93721 ATTTCATCTCGCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTCAGACAGTTTCTCT
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTC-CTTGAGACAGTTTCTCT
93786 TGAAA
65 TGAAA
93791 TAAATTTCGT
Statistics
Matches: 234, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
100 8 0.03
101 72 0.31
102 154 0.66
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (101 bp):
ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCTTGAGACAGTTTCTCTT
GAAACATAAACATTGAAAACATTTCCCGTGAAACAA
Found at i:93874 original size:138 final size:138
Alignment explanation
Indices: 93621--93884 Score: 366
Period size: 138 Copynumber: 1.9 Consensus size: 138
93611 GTGAAATAAA
* *
93621 TTTTGTCACTCTTGAGACAGTTTCCCATGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
1 TTTTGTCACTCTTCAGACAGTTTCCCATGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTG
* * * ** * *
93686 AAACAAATTATTTAAATATGTTTTATTTGAAACAAATTTCATCTCGCTTGAGACAGTTTCTTTTG
66 AAACAAAATATTTAAATATATTTCACCTAAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTG
93751 GAACTAAG
131 GAACTAAG
* * * *
93759 TTTTGTCTCTCTTCAGACAGTTTCTCTTGAAATAAATTTCGTCTCTCTTGAGACAGTTTCCCTTG
1 TTTTGTCACTCTTCAGACAGTTTCCCATGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTG
* * * **
93824 AAACAAAATATTTGAATTTATTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACAGTTTCT
66 AAACAAAATATTTAAATATATTTCACCTAAAACAAATTTCATCTCCCTTGAGACAGTTTCT
93885 CTTGAAACAC
Statistics
Matches: 108, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
138 108 1.00
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (138 bp):
TTTTGTCACTCTTCAGACAGTTTCCCATGAAACAAATTTCGTCTCTCTTGAGACAGTTTCCCTTG
AAACAAAATATTTAAATATATTTCACCTAAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTG
GAACTAAG
Found at i:93958 original size:67 final size:67
Alignment explanation
Indices: 93792--93960 Score: 209
Period size: 67 Copynumber: 2.6 Consensus size: 67
93782 CTCTTGAAAT
* * * * *
93792 AAATTTCGTCTCTCTTGAGACAGTTTCCCTTG-AA-ACAAAATATTTGAATTTATTTCCCCTAAA
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATATTTAAATTTATTTCCCCTAAA
*
93855 AC
66 AA
* * *
93857 AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTAAATTTATTTCCCTTAAA
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATATTTAAATTTATTTCCCCTAAA
93922 ATA
66 A-A
* *
93925 AAATTTTGTTTCCCTTGAGACCGTTT-TCATGAAACA
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACA
93961 ACAGATATCT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
65 29 0.32
66 2 0.02
67 36 0.40
68 24 0.26
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.38
Consensus pattern (67 bp):
AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATATTTAAATTTATTTCCCCTAAA
AA
Found at i:93997 original size:68 final size:67
Alignment explanation
Indices: 93792--93997 Score: 195
Period size: 67 Copynumber: 3.1 Consensus size: 67
93782 CTCTTGAAAT
* * * * * * * *
93792 AAATTTCGTCTCTCTTGAGACAGTTTCCCTTG-AA-ACAAAATATTTGAATTTATTTCCCCTAAA
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTTAAATTCATTTCCCTTAAA
93855 AC
66 AC
* *
93857 AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTTAAATTTATTTCCCTTAAA
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTTAAATTCATTTCCCTTAAA
*
93922 ATA
66 A-C
* * * * *
93925 AAATTTTGTTTCCCTTGAGACCGTTT-TCATGAAACAACAGATATCTTTGAGA-TCGTTTCCCTT
1 AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAAC-ACA-AAATCTTT-AAATTCATTTCCCTT
*
93988 GAAAC
63 AAAAC
93993 AAATT
1 AAATT
93998 ATATCTCTTT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
65 29 0.24
66 2 0.02
67 35 0.29
68 32 0.27
69 19 0.16
70 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (67 bp):
AAATTTTGTCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTTAAATTCATTTCCCTTAAA
AC
Found at i:94876 original size:110 final size:106
Alignment explanation
Indices: 94670--94929 Score: 299
Period size: 110 Copynumber: 2.4 Consensus size: 106
94660 ACGAAGGGGC
* * * * * *
94670 TTCCCAGTTTCAGAACCAATTTCAACTTCACATCGAGGGATATTGGACTCAAGACAACAGAAGCT
1 TTCCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGAACTCAAGACAACACAAGCT
* * *
94735 CAAATTCATAATGAAGGGGCGACTTCTTGTCAACAAACAACT
66 CAAATTCACAACGAAGGGGCGACTGCTTGTCAACAAACAA-T
* * *
94777 TT-TCAGTTTCATTCAGAGTCAATTTCAACTTCACAACGAAGGATATTGAACTCGAGACAACACA
1 TTCCCAG-TTC---CAGAGCCAATTTCAACTTCACAACGAAGGATATTGAACTCAAGACAACACA
* * * *
94841 AGCTCAACTTCACAGCGAAGGGGCGGCTGGC-TGTCAACAAATAAT
62 AGCTCAAATTCACAACGAAGGGGCGACT-GCTTGTCAACAAACAAT
*
94886 TTCCCAGTTCCAGAGCCAATTTCAACTTCACGACGAAGGATATT
1 TTCCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATT
94930 CGACTCGGAA
Statistics
Matches: 128, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
106 35 0.27
107 4 0.03
109 6 0.05
110 82 0.64
111 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (106 bp):
TTCCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGAACTCAAGACAACACAAGCT
CAAATTCACAACGAAGGGGCGACTGCTTGTCAACAAACAAT
Found at i:96400 original size:18 final size:18
Alignment explanation
Indices: 96350--96401 Score: 50
Period size: 20 Copynumber: 2.8 Consensus size: 18
96340 TATATATATA
* **
96350 TTTTTTAATTATATTTTT
1 TTTTTTTATTATATTCCT
*
96368 TATTTATTTACTATATTCCT
1 T-TTT-TTTATTATATTCCT
96388 TTTTTTTATTATAT
1 TTTTTTTATTATAT
96402 ATATCTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 10 0.37
19 6 0.22
20 11 0.41
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTTATTATATTCCT
Found at i:96402 original size:2 final size:2
Alignment explanation
Indices: 96397--96443 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
96387 TTTTTTTTAT
*
96397 TA TA TA TA TC T- TA TA TA -A T- TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
96436 TA TG TA TA
1 TA TA TA TA
96444 GATGTATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96975 original size:21 final size:21
Alignment explanation
Indices: 96950--96990 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
96940 CTGAATGTTT
96950 AATTTAAATTAA-TTAAATAAA
1 AATTT-AATTAATTTAAATAAA
96971 AATTTAATTAATTTAAATAA
1 AATTTAATTAATTTAAATAA
96991 TAAAATTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTAATTAATTTAAATAAA
Found at i:98682 original size:25 final size:25
Alignment explanation
Indices: 98654--98703 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
98644 GTAGACCTTC
*
98654 TTGTCTTTAATTTATAAATTAAACT
1 TTGTCTTTAATTTACAAATTAAACT
*
98679 TTGTCTTTAATTTCCAAATTAAACT
1 TTGTCTTTAATTTACAAATTAAACT
98704 ACTGAATGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.50
Consensus pattern (25 bp):
TTGTCTTTAATTTACAAATTAAACT
Found at i:104470 original size:26 final size:26
Alignment explanation
Indices: 104424--104475 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
104414 AATCCCAAAT
* *
104424 ATTTAATTTAAATTAATTAATTAAAG
1 ATTTAATTTAAATTAAATAATAAAAG
*
104450 ATTTAA-TTAATTTGAAATAATAAAAG
1 ATTTAATTTAAATT-AAATAATAAAAG
104476 CCCTAATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (26 bp):
ATTTAATTTAAATTAAATAATAAAAG
Found at i:112378 original size:6 final size:6
Alignment explanation
Indices: 112367--112393 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
112357 TTGTTGATCT
112367 TTTGAG TTTGAG TTTGAG TTTGAG TTT
1 TTTGAG TTTGAG TTTGAG TTTGAG TTT
112394 TGAGATGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.56
Consensus pattern (6 bp):
TTTGAG
Found at i:113203 original size:21 final size:22
Alignment explanation
Indices: 113154--113205 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
113144 AAATTAGTCT
*
113154 TATTCGATTCATATTCATTTTTT
1 TATT-GATTCATATTCATTTTTA
113177 TATTGATTCATATTC-TTTTTA
1 TATTGATTCATATTCATTTTTA
*
113198 TCTTGATT
1 TATTGATT
113206 TTCTCTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 12 0.44
22 11 0.41
23 4 0.15
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62
Consensus pattern (22 bp):
TATTGATTCATATTCATTTTTA
Found at i:114175 original size:14 final size:15
Alignment explanation
Indices: 114149--114182 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
114139 TATGATTGAG
114149 ATAATGATGTTAATT
1 ATAATGATGTTAATT
*
114164 TTAATG-TGTTAATT
1 ATAATGATGTTAATT
114178 ATAAT
1 ATAAT
114183 TTTTGATGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
ATAATGATGTTAATT
Found at i:128932 original size:17 final size:17
Alignment explanation
Indices: 128873--128922 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
128863 TAAACGTTAA
*
128873 TTTAATAAATGAACTAG
1 TTTAATTAATGAACTAG
* *
128890 TTTGATTTATGAACTAG
1 TTTAATTAATGAACTAG
128907 TTTAATTAATGAACTA
1 TTTAATTAATGAACTA
128923 ACTTTATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (17 bp):
TTTAATTAATGAACTAG
Found at i:128950 original size:18 final size:17
Alignment explanation
Indices: 128929--128988 Score: 70
Period size: 16 Copynumber: 3.5 Consensus size: 17
128919 ACTAACTTTA
128929 TTAAATGAAATAG-ATGC
1 TTAAATGAAAT-GCATGC
*
128946 TTTAAATGCAATGCATGC
1 -TTAAATGAAATGCATGC
*
128964 TTAAATGAACT-CATGC
1 TTAAATGAAATGCATGC
128980 TTAAATGAA
1 TTAAATGAA
128989 GTAGCATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 14 0.37
17 10 0.26
18 14 0.37
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.32
Consensus pattern (17 bp):
TTAAATGAAATGCATGC
Found at i:129539 original size:21 final size:21
Alignment explanation
Indices: 129493--129539 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
129483 AAGCAAAAAT
* *
129493 AAGTCTTTTCCATAGATGGAG
1 AAGTCATTTCCATAAATGGAG
* *
129514 TAGTCATTTCCATAAATGTAG
1 AAGTCATTTCCATAAATGGAG
129535 AAGTC
1 AAGTC
129540 CTTTTGAACT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (21 bp):
AAGTCATTTCCATAAATGGAG
Found at i:135987 original size:17 final size:17
Alignment explanation
Indices: 135956--136015 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
135946 TGCATGAAGC
*
135956 AATTAA-GAGTTAGTTT
1 AATTAATGAATTAGTTT
*
135972 AATAAATGAATTAGTTT
1 AATTAATGAATTAGTTT
* * *
135989 GATTTATGAACTAGTTT
1 AATTAATGAATTAGTTT
136006 AATTAATGAA
1 AATTAATGAA
136016 CTAACTTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
16 5 0.14
17 30 0.86
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.42
Consensus pattern (17 bp):
AATTAATGAATTAGTTT
Found at i:136016 original size:17 final size:17
Alignment explanation
Indices: 135966--136018 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
135956 AATTAAGAGT
* *
135966 TAGTTTAATAAATGAAT
1 TAGTTTAATTAATGAAC
* *
135983 TAGTTTGATTTATGAAC
1 TAGTTTAATTAATGAAC
136000 TAGTTTAATTAATGAAC
1 TAGTTTAATTAATGAAC
136017 TA
1 TA
136019 ACTTTATTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (17 bp):
TAGTTTAATTAATGAAC
Found at i:136046 original size:18 final size:17
Alignment explanation
Indices: 136025--136084 Score: 70
Period size: 16 Copynumber: 3.5 Consensus size: 17
136015 ACTAACTTTA
136025 TTAAATGAAATAG-ATGC
1 TTAAATGAAAT-GCATGC
*
136042 TTTAAATGCAATGCATGC
1 -TTAAATGAAATGCATGC
*
136060 TTAAATGAAGT-CATGC
1 TTAAATGAAATGCATGC
136076 TTAAATGAA
1 TTAAATGAA
136085 GTAGCATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 14 0.37
17 10 0.26
18 14 0.37
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.32
Consensus pattern (17 bp):
TTAAATGAAATGCATGC
Found at i:139108 original size:20 final size:20
Alignment explanation
Indices: 139080--139125 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
139070 CAACACCGAA
*
139080 CAACGGTCAAT-GACGGCGGT
1 CAACAGTCAATGGA-GGCGGT
*
139100 CAACAGTCAATGGAGGTGGT
1 CAACAGTCAATGGAGGCGGT
139120 CAACAG
1 CAACAG
139126 CTTAGCTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.30, C:0.22, G:0.33, T:0.15
Consensus pattern (20 bp):
CAACAGTCAATGGAGGCGGT
Found at i:150943 original size:22 final size:22
Alignment explanation
Indices: 150917--150959 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
150907 TCCATTCAAT
150917 ATCAACACCATCAACATCTTCC
1 ATCAACACCATCAACATCTTCC
**
150939 ATCAAGGCCATCAACATCTTC
1 ATCAACACCATCAACATCTTC
150960 ATAATTCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.37, G:0.05, T:0.23
Consensus pattern (22 bp):
ATCAACACCATCAACATCTTCC
Found at i:152235 original size:16 final size:16
Alignment explanation
Indices: 152214--152246 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
152204 TAGTTAGCTC
152214 ATTTGCATTCTAACAT
1 ATTTGCATTCTAACAT
152230 ATTTGCATTCTAACAT
1 ATTTGCATTCTAACAT
152246 A
1 A
152247 GGTGGCAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGCATTCTAACAT
Found at i:157784 original size:2 final size:2
Alignment explanation
Indices: 157777--157807 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
157767 GTTTATACAT
157777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
157808 TATCCCTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:158603 original size:57 final size:57
Alignment explanation
Indices: 158366--159078 Score: 1034
Period size: 57 Copynumber: 12.5 Consensus size: 57
158356 GTCCAATACA
* * ** * ** *
158366 GAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGCACATGAAGTGCCTTATCT
1 GAAATTCATACACTTAGTATG-ATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* * * * *
158424 GAAAATTCATACACTTAGTATGATTTCCTTATCATTTTAGCATACAAAACACCTTATCT
1 G-AAATTCATACACTTAGTATGATTT-CTTAACATTTTAGCGTACGAAACGCCCTATCT
* *
158483 GAAATTCATACACTTAGTATGATTTCTTAACA-TTTAGCGTACGAAACACTCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
*
158539 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCATACGAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* * * *
158596 GAAATTCATACACGTAGTATGATTTCTTAACATTTTAGCGTACTAAATGCCCAATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
158653 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
*
158710 GAAATTCATACACTTAGTATGATTT-TTAACATTTTAGCGTACGAAACACCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* * * * *
158766 GAAATTTATACACTTAGTATGATTTCTTAACATTTTTGTGTACAAAATGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* *
158823 GAAATTCATAGACTTAGTATGATTTCTTAACATTTTAGCGTACGAAATGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
** *
158880 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGTTTACGAAACACCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* * **
158937 AAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAATGCTTTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
* * * *
158994 AAAATTCATACACTTAGTTTGATTTCTTAACATTTTAGCGTATGAAATGCCCTATCT
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
159051 GAAATTCATACACTTAGTATGATTTCTT
1 GAAATTCATACACTTAGTATGATTTCTT
159079 TTATTTTGCA
Statistics
Matches: 597, Mismatches: 54, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
56 106 0.18
57 416 0.70
58 29 0.05
59 46 0.08
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.38
Consensus pattern (57 bp):
GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCT
Found at i:158723 original size:227 final size:228
Alignment explanation
Indices: 158366--159078 Score: 1092
Period size: 227 Copynumber: 3.1 Consensus size: 228
158356 GTCCAATACA
* * * *
158366 GAAATTCATACACTTAGTATGAATTTCTTATCATGTTAGC--ACATGAAGTGCCTTATCTGAAAA
1 GAAATTCATACACTTAGTATG-ATTTCTTAACATTTTAGCGTAC-T-AAATGCCCTATCTG-AAA
* * *
158429 TTCATACACTTAGTATGATTTCCTTATCATTTTAGCATACAAAACACCTTATCTGAAATTCATAC
62 TTCATACACTTAGTATGATTT-CTTAACATTTTAGCATACGAAACACCCTATCTGAAATTCATAC
158494 ACTTAGTATGATTTCTTAACA-TTTAGCGTACGAAACACTCTATCTGAAATTCATACACTTAGTA
126 ACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACACTCTATCTGAAATTCATACACTTAGTA
* *
158558 TGATTTCTTAACATTTTAGCATACGAAACGCCCTATCT
191 TGATTTCTTAACATTTTAGCGTACGAAATGCCCTATCT
* *
158596 GAAATTCATACACGTAGTATGATTTCTTAACATTTTAGCGTACTAAATGCCCAATCTGAAATTCA
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACTAAATGCCCTATCTGAAATTCA
* *
158661 TACACTTAGTATGATTTCTTAACATTTTAGCGTACGAAACGCCCTATCTGAAATTCATACACTTA
66 TACACTTAGTATGATTTCTTAACATTTTAGCATACGAAACACCCTATCTGAAATTCATACACTTA
* *
158726 GTATGATTT-TTAACATTTTAGCGTACGAAACACCCTATCTGAAATTTATACACTTAGTATGATT
131 GTATGATTTCTTAACATTTTAGCGTACGAAACACTCTATCTGAAATTCATACACTTAGTATGATT
* * *
158790 TCTTAACATTTTTGTGTACAAAATGCCCTATCT
196 TCTTAACATTTTAGCGTACGAAATGCCCTATCT
* *
158823 GAAATTCATAGACTTAGTATGATTTCTTAACATTTTAGCGTACGAAATGCCCTATCTGAAATTCA
1 GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACTAAATGCCCTATCTGAAATTCA
** *
158888 TACACTTAGTATGATTTCTTAACATTTTAGTTTACGAAACACCCTATCTAAAATTCATACACTTA
66 TACACTTAGTATGATTTCTTAACATTTTAGCATACGAAACACCCTATCTGAAATTCATACACTTA
** * * *
158953 GTATGATTTCTTAACATTTTAGCGTACGAAATGCTTTATCTAAAATTCATACACTTAGTTTGATT
131 GTATGATTTCTTAACATTTTAGCGTACGAAACACTCTATCTGAAATTCATACACTTAGTATGATT
*
159018 TCTTAACATTTTAGCGTATGAAATGCCCTATCT
196 TCTTAACATTTTAGCGTACGAAATGCCCTATCT
159051 GAAATTCATACACTTAGTATGATTTCTT
1 GAAATTCATACACTTAGTATGATTTCTT
159079 TTATTTTGCA
Statistics
Matches: 441, Mismatches: 38, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
226 6 0.01
227 257 0.58
228 128 0.29
229 27 0.06
230 21 0.05
231 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.38
Consensus pattern (228 bp):
GAAATTCATACACTTAGTATGATTTCTTAACATTTTAGCGTACTAAATGCCCTATCTGAAATTCA
TACACTTAGTATGATTTCTTAACATTTTAGCATACGAAACACCCTATCTGAAATTCATACACTTA
GTATGATTTCTTAACATTTTAGCGTACGAAACACTCTATCTGAAATTCATACACTTAGTATGATT
TCTTAACATTTTAGCGTACGAAATGCCCTATCT
Found at i:159464 original size:22 final size:21
Alignment explanation
Indices: 159419--159477 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 21
159409 ATGGTCCTTC
*
159419 GGTATCGATAC-CCCTTCTAT
1 GGTATCGATACTCCCTTCTAG
159439 GGTATCGATACTACCCTAT-TAG
1 GGTATCGATACT-CCCT-TCTAG
159461 GGTATCGATACTCCCTT
1 GGTATCGATACTCCCTT
159478 AATGTATCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
20 12 0.34
21 4 0.11
22 18 0.51
23 1 0.03
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (21 bp):
GGTATCGATACTCCCTTCTAG
Found at i:159566 original size:95 final size:94
Alignment explanation
Indices: 159419--159644 Score: 226
Period size: 95 Copynumber: 2.4 Consensus size: 94
159409 ATGGTCCTTC
* * * *
159419 GGTATCGATACCC-CTTCTATGGTATCGATACTACCCTATTAGGGTATCGATACTCCCT-TAATG
1 GGTATCGATACCCTC-ACCATGGTATCGATAC--CCCTATTAGGGTATCGATACCCCCTCT-AGG
* *
159482 TATCAATACCGAAATTAGCTTCGATA-TAGCCT
62 TATCAATACCGAAATTAGATTCGATATTAGACT
* *
159514 GGTATGGATACCCTCACCATGGTATCGATACCCCTATGCTATGGTA-CTGATACCCCCTCTAGGT
1 GGTATCGATACCCTCACCATGGTATCGATACCCCTAT--TAGGGTATC-GATACCCCCTCTAGGT
* * * **
159578 ATTAATACCTAATTTAGATTCGATATTTTTACT
63 ATCAATACCGAAATTAGATTCGATA-TTAGACT
*
159611 GGTATCGATACCCTTACCATGGTATCGATACCCC
1 GGTATCGATACCCTCACCATGGTATCGATACCCC
159645 ATTGCTTGGG
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
93 6 0.06
94 1 0.01
95 65 0.60
96 2 0.02
97 35 0.32
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (94 bp):
GGTATCGATACCCTCACCATGGTATCGATACCCCTATTAGGGTATCGATACCCCCTCTAGGTATC
AATACCGAAATTAGATTCGATATTAGACT
Found at i:168642 original size:20 final size:18
Alignment explanation
Indices: 168576--168656 Score: 70
Period size: 18 Copynumber: 4.8 Consensus size: 18
168566 TTTTAATTCT
168576 TTTTCATATATCA-TTATTA
1 TTTT-ATATAT-ATTTATTA
168595 -TTTATATATATTT-TTA
1 TTTTATATATATTTATTA
168611 --TTACTATA-A-TTA-TA
1 TTTTA-TATATATTTATTA
*
168625 TGTTATATATATTTATTA
1 TTTTATATATATTTATTA
168643 TTTTATATATATTT
1 TTTTATATATATTT
168657 CATTTTATCT
Statistics
Matches: 53, Mismatches: 1, Indels: 17
0.75 0.01 0.24
Matches are distributed among these distances:
14 4 0.08
15 8 0.15
16 12 0.23
17 11 0.21
18 18 0.34
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (18 bp):
TTTTATATATATTTATTA
Found at i:168651 original size:16 final size:16
Alignment explanation
Indices: 168589--168678 Score: 59
Period size: 16 Copynumber: 5.8 Consensus size: 16
168579 TCATATATCA
168589 TTATTATTTATATATAT
1 TTATTATTT-TATATAT
*
168606 TT-TTA--TTACTATAA
1 TTATTATTTTA-TATAT
168620 TTA-TATGTTATATATAT
1 TTATTAT-TT-TATATAT
168637 TTATTATTTTATATAT
1 TTATTATTTTATATAT
* *
168653 ATT-TCATTTTATCT-T
1 -TTATTATTTTATATAT
168668 TTATT-TTTTAT
1 TTATTATTTTAT
168679 CTTCTATTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 21
0.69 0.06 0.25
Matches are distributed among these distances:
13 2 0.03
14 17 0.29
15 2 0.03
16 19 0.32
17 14 0.24
18 5 0.08
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (16 bp):
TTATTATTTTATATAT
Found at i:168691 original size:13 final size:14
Alignment explanation
Indices: 168659--168689 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
168649 ATATATTTCA
*
168659 TTTTATCTTTTATT
1 TTTTATCTTCTATT
168673 TTTTATCTTCTATT
1 TTTTATCTTCTATT
168687 TTT
1 TTT
168690 ATTTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATCTTCTATT
Found at i:168706 original size:20 final size:19
Alignment explanation
Indices: 168660--168764 Score: 58
Period size: 20 Copynumber: 5.5 Consensus size: 19
168650 TATATTTCAT
168660 TTTATCTTTTATTTTTTATC
1 TTTAT-TTTTATTTTTTATC
168680 TTCTATTTTTATTTTTGTAT-
1 TT-TATTTTTATTTTT-TATC
* * *
168700 TGTTATTGTTATTATCT-TC
1 T-TTATTTTTATTTTTTATC
168719 TTTA-TTTTATGTATTTTA--
1 TTTATTTTTAT-T-TTTTATC
* * *
168737 TTTATATATATTTTTTATA
1 TTTATTTTTATTTTTTATC
*
168756 TTTGTTTTT
1 TTTATTTTT
168765 GTGCCTCTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
17 10 0.16
18 10 0.16
19 14 0.22
20 23 0.36
21 7 0.11
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTATTTTTATTTTTTATC
Found at i:168750 original size:15 final size:14
Alignment explanation
Indices: 168582--168750 Score: 50
Period size: 14 Copynumber: 11.7 Consensus size: 14
168572 TTCTTTTTCA
168582 TATATCATTATTATTT
1 TATAT-ATT-TTATTT
*
168598 ATATATATTTT-TAT
1 -TATATATTTTATTT
* *
168612 TACTATAATTATATGT
1 TA-TAT-ATTTTATTT
168628 TATATA---TA-TT
1 TATATATTTTATTT
*
168638 TAT-TATTTTATATA
1 TATATATTTTAT-TT
*
168652 TATTTCATTTTATCTT
1 TATAT-ATTTTAT-TT
* *
168668 T-TATTTTTTATCT
1 TATATATTTTATTT
*
168681 TCTAT-TTTTATTT
1 TATATATTTTATTT
*
168694 T-TGTATTGTTATTGT
1 TATATATT-TTATT-T
*
168709 TATTATCTTCTTTATTT
1 TA-TAT-AT-TTTATTT
*
168726 TATGTATTTTATTT
1 TATATATTTTATTT
168740 ATATATATTTT
1 -TATATATTTT
168751 TTATATTTGT
Statistics
Matches: 116, Mismatches: 17, Indels: 40
0.67 0.10 0.23
Matches are distributed among these distances:
9 2 0.02
10 4 0.03
11 2 0.02
12 4 0.03
13 14 0.12
14 31 0.27
15 24 0.21
16 18 0.16
17 10 0.09
18 6 0.05
19 1 0.01
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (14 bp):
TATATATTTTATTT
Found at i:168758 original size:33 final size:32
Alignment explanation
Indices: 168685--168760 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
168675 TTATCTTCTA
168685 TTTTTATTTTTGTATTGTTATTGTTATTATCT
1 TTTTTATTTTTGTATTGTTATTGTTATTATCT
* *
168717 TCTTTATTTTATGTATT-TTA-T-TTATATATAT
1 TTTTTATTTT-TGTATTGTTATTGTTAT-TATCT
*
168748 TTTTTATATTTGT
1 TTTTTATTTTTGT
168761 TTTTGTGCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
30 7 0.18
31 13 0.34
32 12 0.32
33 6 0.16
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.71
Consensus pattern (32 bp):
TTTTTATTTTTGTATTGTTATTGTTATTATCT
Found at i:180243 original size:43 final size:43
Alignment explanation
Indices: 180190--180271 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
180180 ACGAAAGAGC
* *
180190 CATCCGCGATTTCAACTCCACGACGGAGGATATCGTGCCCGCA
1 CATCCACGATTTCAACTCCAAGACGGAGGATATCGTGCCCGCA
180233 CATCCACGATTTCAACTCCAAGACGGAGGATATCGTGCC
1 CATCCACGATTTCAACTCCAAGACGGAGGATATCGTGCC
180272 ATTTGAGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.33, G:0.22, T:0.20
Consensus pattern (43 bp):
CATCCACGATTTCAACTCCAAGACGGAGGATATCGTGCCCGCA
Found at i:182102 original size:16 final size:15
Alignment explanation
Indices: 182080--182138 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
182070 CCATTATTAT
182080 TTATATATATTTTTA
1 TTATATATATTTTTA
* *
182095 TTACTATA-ATTATATG
1 TTA-TATATATT-TTTA
182111 TTATATATATTTATTA
1 TTATATATATTT-TTA
*
182127 TTTTATATATTT
1 TTATATATATTT
182139 CATTTTGTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 11 0.31
16 24 0.69
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TTATATATATTTTTA
Found at i:182177 original size:33 final size:36
Alignment explanation
Indices: 182121--182211 Score: 98
Period size: 34 Copynumber: 2.6 Consensus size: 36
182111 TTATATATAT
* * * *
182121 TTATTATTTTATATATTTCATTTTGTCTT-TTATT-
1 TTATTATCTTCTATATTTTATTTTGTATTGTTATTG
*
182155 TTTTTATCTTCTAT-TTTTATTTTTGTATTGTTATTG
1 TTATTATCTTCTATATTTTA-TTTTGTATTGTTATTG
*
182191 TTATTATCTTCTTTATTTTAT
1 TTATTATCTTCTATATTTTAT
182212 GTATTTTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
33 4 0.09
34 19 0.41
35 5 0.11
36 13 0.28
37 5 0.11
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (36 bp):
TTATTATCTTCTATATTTTATTTTGTATTGTTATTG
Found at i:182225 original size:2 final size:2
Alignment explanation
Indices: 182218--182266 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
182208 TTATGTATTT
182218 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
182260 TA TA TA T
1 TA TA TA T
182267 TTGTTTTTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:185839 original size:13 final size:13
Alignment explanation
Indices: 185798--185828 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
185788 CGACCCGTTT
*
185798 ACCCGTTTACCCG
1 ACCCGTTGACCCG
185811 ACCCGTTGACCCG
1 ACCCGTTGACCCG
185824 ACCCG
1 ACCCG
185829 ACCCGTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.48, G:0.19, T:0.16
Consensus pattern (13 bp):
ACCCGTTGACCCG
Found at i:185843 original size:7 final size:7
Alignment explanation
Indices: 185831--185861 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
185821 CCGACCCGAC
185831 CCGTTGA
1 CCGTTGA
185838 CCGTTGA
1 CCGTTGA
185845 CCGTTGA
1 CCGTTGA
185852 CCGTTGA
1 CCGTTGA
185859 CCG
1 CCG
185862 GTGCTATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.32, G:0.29, T:0.26
Consensus pattern (7 bp):
CCGTTGA
Found at i:185922 original size:29 final size:29
Alignment explanation
Indices: 185861--185936 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
185851 ACCGTTGACC
*** *
185861 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
185890 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* *
185919 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
185937 TTTTAAAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:193084 original size:13 final size:13
Alignment explanation
Indices: 193043--193073 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
193033 CGACCCGTTT
*
193043 ACCCGTTTACCCG
1 ACCCGTTGACCCG
193056 ACCCGTTGACCCG
1 ACCCGTTGACCCG
193069 ACCCG
1 ACCCG
193074 ACCCGTTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.48, G:0.19, T:0.16
Consensus pattern (13 bp):
ACCCGTTGACCCG
Found at i:193160 original size:29 final size:29
Alignment explanation
Indices: 193099--193174 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
193089 ACCGTTGACC
*** *
193099 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTCTGGGAATTAATTCGAAATG
193128 GGTGCTATTCTGGGAATTAATTCGAAATG
1 GGTGCTATTCTGGGAATTAATTCGAAATG
* *
193157 GGTGCTATTTTGGTAATT
1 GGTGCTATTCTGGGAATT
193175 TTTTTAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (29 bp):
GGTGCTATTCTGGGAATTAATTCGAAATG
Found at i:198476 original size:23 final size:23
Alignment explanation
Indices: 198446--198499 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
198436 AGGCAAAGTT
198446 TCTCCTATGGGTCTTTTCCTAGA
1 TCTCCTATGGGTCTTTTCCTAGA
* *
198469 TCTCCTATGGGTCTTTTTCTAGG
1 TCTCCTATGGGTCTTTTCCTAGA
198492 TCTCCTAT
1 TCTCCTAT
198500 TATTGGGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (23 bp):
TCTCCTATGGGTCTTTTCCTAGA
Found at i:202017 original size:17 final size:17
Alignment explanation
Indices: 201995--202045 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
201985 AATTAAGAGT
201995 TAGTTT-ATTAAATGAAC
1 TAGTTTAATT-AATGAAC
* *
202012 TAGTTTGATGAATGAAC
1 TAGTTTAATTAATGAAC
*
202029 TACTTTAATTAATGAAC
1 TAGTTTAATTAATGAAC
202046 CAACTTTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 27 0.93
18 2 0.07
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (17 bp):
TAGTTTAATTAATGAAC
Found at i:204285 original size:38 final size:38
Alignment explanation
Indices: 204209--204288 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
204199 CAAGGTAAAG
* *
204209 AAAACAAAATAAGATAAAGAGAATAAAATAAAAGGGAA
1 AAAACAAAATAAAATAAAGAGAATAAAATAAAAAGGAA
* *
204247 AAAATAAAATAAAATAAATA-AAT-AAATAAGATAAGGAA
1 AAAACAAAATAAAATAAAGAGAATAAAATAA-A-AAGGAA
204285 AAAA
1 AAAA
204289 AATAGTAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 6 0.17
37 4 0.11
38 26 0.72
ACGTcount: A:0.74, C:0.01, G:0.11, T:0.14
Consensus pattern (38 bp):
AAAACAAAATAAAATAAAGAGAATAAAATAAAAAGGAA
Found at i:204413 original size:44 final size:46
Alignment explanation
Indices: 204335--204423 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
204325 AAAATGAAAA
* *
204335 ATATATATATGTATACATCAAAGTATTAATAAAATA-AATAAGCTAT
1 ATATATATATATATACAACAAAGTATTAATAAAATAGAA-AAGCTAT
*
204381 ATATATATATATATACAACAAA-TATTTA-AAAATAGAAAAGCTA
1 ATATATATATATATACAACAAAGTATTAATAAAATAGAAAAGCTA
204424 CCCTCTCACT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 12 0.31
45 7 0.18
46 20 0.51
ACGTcount: A:0.55, C:0.07, G:0.06, T:0.33
Consensus pattern (46 bp):
ATATATATATATATACAACAAAGTATTAATAAAATAGAAAAGCTAT
Found at i:204923 original size:18 final size:17
Alignment explanation
Indices: 204900--204942 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
204890 ATATATACGT
204900 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
204918 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
204935 ATAA-AATA
1 ATAATAATA
204943 TCCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:206437 original size:106 final size:106
Alignment explanation
Indices: 206234--206806 Score: 808
Period size: 106 Copynumber: 5.4 Consensus size: 106
206224 GTATTGTTCC
* * *
206234 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCCGGAACTGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACA
* * * * * *
206298 GCCAGCCGCCCCTTCGCTGTGAAGTTGACCTTGTGTTGTCTC
65 ACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
* ** * *
206340 AAGTTTAATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACAA
* * * **
206405 CCATTCGTCCCTTCGTTCTGAATTTGAACTTGTGTCATCTT
66 CCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
* * * *
206446 GAGTCCAATATCCTTCGCTATGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTGCTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACAA
*
206511 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
* * * *
206552 GAGTTCAATATCCTTCGCTGTGAAGTTGAAATTTGCTCTGAAACT-GAAAAGTGGTTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAA-TTGTTTGTTGACA
* *
206616 ACCAGTCGTCCCTTCGTTGTGAAGTTGCACTTATGTTGTCTT
65 ACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
*
206658 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAACTGGGAAATTGTTTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTG-TTTGTTGACA
*
206723 ACCAGTCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTT
65 ACCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
*
206765 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
206807 TGAAACTAAA
Statistics
Matches: 410, Mismatches: 53, Indels: 7
0.87 0.11 0.01
Matches are distributed among these distances:
105 4 0.01
106 312 0.76
107 94 0.23
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACAA
CCAGTCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
Found at i:214678 original size:10 final size:10
Alignment explanation
Indices: 214655--214712 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
214645 ACAGTTAGTA
*
214655 AAATAAAAAG
1 AAATAAAAAT
*
214665 AAATAGAAAT
1 AAATAAAAAT
214675 AAATAAAAAT
1 AAATAAAAAT
214685 AAATAAAAA-
1 AAATAAAAAT
*
214694 CAATAATAAAAT
1 AAAT-A-AAAAT
214706 AAATAAA
1 AAATAAA
214713 TGTCAAGAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 3 0.08
10 29 0.73
11 5 0.12
12 3 0.08
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:215633 original size:21 final size:24
Alignment explanation
Indices: 215609--215657 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
215599 AAATGTGTAG
215609 ATAAAC-AAGGTAA-AG-AAACAA
1 ATAAACGAAGGTAATAGAAAACAA
*
215630 ATAAACGATGGTAATAGAAAACAA
1 ATAAACGAAGGTAATAGAAAACAA
215654 ATAA
1 ATAA
215658 GATAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 6 0.25
22 6 0.25
23 2 0.08
24 10 0.42
ACGTcount: A:0.63, C:0.08, G:0.14, T:0.14
Consensus pattern (24 bp):
ATAAACGAAGGTAATAGAAAACAA
Found at i:216049 original size:23 final size:22
Alignment explanation
Indices: 216023--216080 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 22
216013 CGAGGTTTTA
216023 AAAAAAATAATATAATAATGAAT
1 AAAAAAATAATATAATAAT-AAT
*
216046 -AAAAAATGA-A-AATAATAAT
1 AAAAAAATAATATAATAATAAT
216065 AAAAATAATATATATA
1 AAAAA-AATA-ATATA
216081 TATATATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 4 0.14
22 9 0.32
23 1 0.04
24 1 0.04
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (22 bp):
AAAAAAATAATATAATAATAAT
Found at i:216271 original size:2 final size:2
Alignment explanation
Indices: 216264--216300 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
216254 TTAAAGAAAC
*
216264 AT AT AT AT AT AT AT AT AT AT AT AT A- AT -T AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
216301 GTAAAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:218814 original size:18 final size:18
Alignment explanation
Indices: 218791--218825 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
218781 GATGAATGAA
218791 AACTTTAATT-AATGAACC
1 AACTTT-ATTCAATGAACC
218809 AACTTTATTCAATGAAC
1 AACTTTATTCAATGAAC
218826 TAGAGGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (18 bp):
AACTTTATTCAATGAACC
Found at i:233638 original size:95 final size:93
Alignment explanation
Indices: 233336--233657 Score: 384
Period size: 92 Copynumber: 3.5 Consensus size: 93
233326 TTTTAATATC
* * * * *
233336 TTAACTTATCCAAGTTGTTACATTTAAAAAT-GAAGTTTGAATAAAGTTGTAATGTCTTAAGAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGATTTGTAATGTCTTAAAAAA
233400 ATAG-TTAATGTTTACAAACTAAAG-TGT
66 ATAGTTTAATGTTTACAAACTAAAGAT-T
* * * *
233427 TTAACATATCCAAGTTGTTACATTCAAACATGGTAGTTTGAATAG-TGTTGTAATGT-TTAACAA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGAT-TTGTAATGTCTTAAAAA
* * * *
233490 AAGACTTTGATGTTTACAAACTAAAGAGT
65 AATAGTTTAATGTTTACAAACTAAAGATT
** *
233519 TTAACTTATCCGGGTTGTTACATTCAAAGATGGAAGTTTGAATAGATTTGGAATGTCTTAAAAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGATTTGTAATGTCTTAAAAAA
* * *
233584 ATTGTTTTATGTTTATAAACCTATAAGATT
66 ATAGTTTAATGTTTACAAA-CTA-AAGATT
* *
233614 TTAACTTATCCAAGTTGTTACATTCAATGATGGAAGTTGGAATA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATA
233658 ACGTAGTGAT
Statistics
Matches: 195, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
91 37 0.19
92 88 0.45
93 22 0.11
94 3 0.02
95 45 0.23
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (93 bp):
TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGATTTGTAATGTCTTAAAAAA
ATAGTTTAATGTTTACAAACTAAAGATT
Found at i:233672 original size:187 final size:183
Alignment explanation
Indices: 233336--233675 Score: 448
Period size: 187 Copynumber: 1.8 Consensus size: 183
233326 TTTTAATATC
* * *
233336 TTAACTTATCCAAGTTGTTACATTTAAAAATGAAGTTTGAATAAAGTTGTAATGTCTTAAGAAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAAATGAAGTTTGAATAAAGTTGGAATGTCTTAAAAAAA
* *
233401 TAGTTAATGTTTACAAACTAAAGTGTTTAACATATCCAAGTTGTTACATTCAAACATGGTAGTTT
66 TAGTTAATGTTTACAAACTAAAGTGTTTAACATATCCAAGTTGTTACATTCAAACATGGAAGTTG
** *
233466 GAATAGTGTTGTAATGTTTAACAAAAGACTTTGATGTTTACAAACTAAAGAGT
131 GAATAACGTAGTAATGTTTAACAAAAGACTTTGATGTTTACAAACTAAAGAGT
** * * *
233519 TTAACTTATCCGGGTTGTTACATTCAAAGATGGAAGTTTGAATAGATTTGGAATGTCTTAAAAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAAAT-GAAGTTTGAATAAAGTTGGAATGTCTTAAAAAA
* * * * **
233584 ATTGTTTTATGTTTATAAACCTATAAGAT-TTTAACTTATCCAAGTTGTTACATTCAATGATGGA
65 ATAG-TTAATGTTTACAAA-CTA-AAG-TGTTTAACATATCCAAGTTGTTACATTCAAACATGGA
*
233648 AGTTGGAATAACGTAGTGATGTTTAACA
126 AGTTGGAATAACGTAGTAATGTTTAACA
233676 TATCCAAGTT
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
183 27 0.20
184 32 0.24
185 12 0.09
186 3 0.02
187 57 0.43
188 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (183 bp):
TTAACTTATCCAAGTTGTTACATTCAAAAATGAAGTTTGAATAAAGTTGGAATGTCTTAAAAAAA
TAGTTAATGTTTACAAACTAAAGTGTTTAACATATCCAAGTTGTTACATTCAAACATGGAAGTTG
GAATAACGTAGTAATGTTTAACAAAAGACTTTGATGTTTACAAACTAAAGAGT
Found at i:234179 original size:57 final size:56
Alignment explanation
Indices: 234075--234206 Score: 147
Period size: 57 Copynumber: 2.3 Consensus size: 56
234065 GTTAAGACAA
* * * * * *
234075 TACAATGTTATTTAAACTTCCATCCCTGAATGTAAAAACTAATATAAGTGAAGGCAT
1 TACAATGTTATTCAAACTTACATCCCTGAATATAAAAACTAAGATAAGTGAA-ACAC
** * * *
234132 TACAATGTTATTCAAACTTACATCTTTGAATATAACAACTTAGATAAGTTAAACAC
1 TACAATGTTATTCAAACTTACATCCCTGAATATAAAAACTAAGATAAGTGAAACAC
*
234188 TACAATGCTATTCAAACTT
1 TACAATGTTATTCAAACTT
234207 CAATAACTGA
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
56 20 0.32
57 43 0.68
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (56 bp):
TACAATGTTATTCAAACTTACATCCCTGAATATAAAAACTAAGATAAGTGAAACAC
Found at i:234290 original size:93 final size:91
Alignment explanation
Indices: 234179--234367 Score: 245
Period size: 92 Copynumber: 2.1 Consensus size: 91
234169 ACTTAGATAA
* * * * *
234179 GTTAAACACTACAATGCTATTCAAACTTCAATAACTGATTGTAACAATTTAGATAAGATACACTC
1 GTTAAACAATACAATGCTATTAAAACTTC-ATAACTGAATGTAACAACTTAGATAAGATAAACTC
234244 TTTAGTTTGTAAACATCAAAA-TGTTTT
65 TTTAGTTTGTAAACAT-AAAATTGTTTT
* *** * *
234271 GTTAAGACAATACAATGCTATTAAAATTTCATCTTTGAATGTAACAACTTGGATAAGTTAAACTC
1 GTTAA-ACAATACAATGCTATTAAAACTTCATAACTGAATGTAACAACTTAGATAAGATAAACTC
234336 TTTAGTTTGTAAACATAAAATTGTTTT
65 TTTAGTTTGTAAACATAAAATTGTTTT
234363 GTTAA
1 GTTAA
234368 TATTATAACA
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
91 4 0.05
92 59 0.70
93 21 0.25
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.38
Consensus pattern (91 bp):
GTTAAACAATACAATGCTATTAAAACTTCATAACTGAATGTAACAACTTAGATAAGATAAACTCT
TTAGTTTGTAAACATAAAATTGTTTT
Found at i:237393 original size:54 final size:54
Alignment explanation
Indices: 237327--237485 Score: 246
Period size: 54 Copynumber: 2.9 Consensus size: 54
237317 AAATAATGAT
* *
237327 GAAATGGCAATTCACAAACTCATAATGAATTCCATGGATTGCACATATAGTGCC
1 GAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACATATAGTGCC
* * *
237381 GAAATGGTAATTCACAAACTCATTTTGAATTCCATGGATTGCACACATAGTGTC
1 GAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACATATAGTGCC
* * *
237435 GAAATGGTAATTCAAAAACTCATTATGAATTCCATGTATTGCATATATAGT
1 GAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACATATAGT
237486 ATCGATAATA
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (54 bp):
GAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACATATAGTGCC
Found at i:240726 original size:18 final size:18
Alignment explanation
Indices: 240678--240726 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
240668 CCTTTATATC
*
240678 TAGAATAGGAACAAGTCT
1 TAGAATAGGCACAAGTCT
240696 TAGAATAGGCACAAGTCT
1 TAGAATAGGCACAAGTCT
* *
240714 TGGAATAGTCACA
1 TAGAATAGGCACA
240727 TGTTTCTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (18 bp):
TAGAATAGGCACAAGTCT
Found at i:248138 original size:54 final size:54
Alignment explanation
Indices: 248067--248285 Score: 307
Period size: 54 Copynumber: 4.1 Consensus size: 54
248057 ATTGCACCTA
*
248067 AGTGCTGAAATGGTAATTAACAAACTCATTATGAAATT-CATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTAACAAACTCATTATG-AATTCCATGGATTGCACACAT
* *
248121 AGTGCCGAAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACATAT
1 AGTGCCGAAATGGTAATTAACAAACTCATTATGAATTCCATGGATTGCACACAT
* * * * *
248175 AGTGTCGAAATTGTAATTCACAATC-CAGTTATGAATTTCATGGATTGCACACAT
1 AGTGCCGAAATGGTAATTAACAAACTCA-TTATGAATTCCATGGATTGCACACAT
* * *
248229 AGTGCCAAAATGGTAATTAACAAACTCATTATGAATTCCATGGACTGTACACAT
1 AGTGCCGAAATGGTAATTAACAAACTCATTATGAATTCCATGGATTGCACACAT
248283 AGT
1 AGT
248286 ACCCATAGTA
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
53 6 0.04
54 138 0.95
55 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (54 bp):
AGTGCCGAAATGGTAATTAACAAACTCATTATGAATTCCATGGATTGCACACAT
Found at i:252076 original size:21 final size:21
Alignment explanation
Indices: 252035--252076 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
252025 AATCAACCAT
* *
252035 TTAAACTTCATTCGATCGTCC
1 TTAAACTTAATTCAATCGTCC
252056 TTAAACTTTAATTCAAT-GTCC
1 TTAAAC-TTAATTCAATCGTCC
252077 AATAATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (21 bp):
TTAAACTTAATTCAATCGTCC
Found at i:252152 original size:17 final size:18
Alignment explanation
Indices: 252111--252152 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
252101 ATAAATTTAC
*
252111 ATCAGAAACTGAACTTAA
1 ATCAGAAACTCAACTTAA
* *
252129 ATGAGAAAC-CAACTTGA
1 ATCAGAAACTCAACTTAA
252146 ATCAGAA
1 ATCAGAA
252153 GATAAAACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.50, C:0.17, G:0.14, T:0.19
Consensus pattern (18 bp):
ATCAGAAACTCAACTTAA
Found at i:254849 original size:92 final size:90
Alignment explanation
Indices: 254539--254859 Score: 308
Period size: 93 Copynumber: 3.5 Consensus size: 90
254529 TTTTAATGTC
* * *
254539 TTAACTTATCCAAGTTGTTACATTTAAAGAT-GAAGTTTGAATAACGTTGTAATGACTTAAGAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAATGTCTT-A-AAA
254603 ATAGTTTAAT-TTCTACAAACTAAAG-TGT
64 AT-GTTTAATGTT-TACAAACTAAAGAT-T
* * * * * *
254631 TTAACATATCCAAGTTGTTACATACAAACATAGAAGTTTGAATAGTGTTGTAATGT-TAAAAAAA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAATGTCT---TAAA
** * *
254695 AACACTTTGATGTTTACAAACTAAAGAGT
63 AA-TGTTTAATGTTTACAAACTAAAGATT
* * * *
254724 TTAACTTATCCAGGTTGTTACTTTAAAAAATGGAAGTTTGAATAGCGTTGTAATGTCTTAAAAAT
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAATGTCTTAAAAAT
* * *
254789 GTTTTATGTTTATGAACCTATAAGATT
66 GTTTAATGTTTA-CAAACTA-AAGATT
* * *
254816 TTAACTTATCCAAGTTGTTACAGTCAATGATGGAAGTTGGAATA
1 TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATA
254860 ACGTCGTGAT
Statistics
Matches: 185, Mismatches: 34, Indels: 20
0.77 0.14 0.08
Matches are distributed among these distances:
90 10 0.05
91 10 0.05
92 70 0.38
93 91 0.49
94 4 0.02
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (90 bp):
TTAACTTATCCAAGTTGTTACATTCAAAGATGGAAGTTTGAATAGCGTTGTAATGTCTTAAAAAT
GTTTAATGTTTACAAACTAAAGATT
Found at i:258083 original size:54 final size:54
Alignment explanation
Indices: 258001--258213 Score: 372
Period size: 54 Copynumber: 3.9 Consensus size: 54
257991 CTAAGTGCCA
*
258001 AAATGGTAGTTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTGTCG
1 AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTGTCG
* * *
258055 AAATGGTAATTCACAAACTCATTATGAATCCCATGGATTGCACATATAGTGCCG
1 AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTGTCG
*
258109 AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAATGTCG
1 AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTGTCG
*
258163 AAATGGTAATTCGCAAACTCATTATGAATTCCATGGATTGCACACATAGTG
1 AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTG
258214 CTGATAGTAC
Statistics
Matches: 149, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 149 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (54 bp):
AAATGGTAATTCACAAACTCATTATGAATTCCATGGATTGCACACATAGTGTCG
Found at i:265550 original size:20 final size:20
Alignment explanation
Indices: 265500--265551 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
265490 ATTCCTCTTG
*
265500 GTATCGATACCTACACCTCA
1 GTATCGATACTTACACCTCA
* *
265520 ATATCGATACTTACACCTTA
1 GTATCGATACTTACACCTCA
265540 GTATCGATACTT
1 GTATCGATACTT
265552 TTTCCATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.33
Consensus pattern (20 bp):
GTATCGATACTTACACCTCA
Found at i:267819 original size:57 final size:57
Alignment explanation
Indices: 267715--268097 Score: 402
Period size: 56 Copynumber: 6.8 Consensus size: 57
267705 TATTAAAATT
* * * * *
267715 TATTTAAACATCCATGTTTGAATGTAAGAACTTGGATAAGTTAAGACATTGCAACGC
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACATTACAACGC
* * * *
267772 TATTCAAACTTCTATCTTTGAAAGTAACAACTTTGATAATTTAAGACATTACAACGC
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACATTACAACGC
* * * **
267829 TATTCAAACTTCCATTTTTGAATGTAACAACTTGGATAAGTT-ACACTTTACAACTA
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACATTACAACGC
* *
267885 TATTCAAACATT-CATATTTGAATGCAACAACTTGGATAAGTTAA-AC-TCTACAACGC
1 TATTCAAAC-TTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACAT-TACAACGC
* * ** **
267941 TATTCAAACTTTCATCTTTGAATGTAACAACTTGGATAAATTAAGACATTGGAACAT
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACATTACAACGC
* * * * * **
267998 TATTTAAACTTCCATTTTTGAATGAAACAACATGGGTAAGTTAAAGAC--TA-AATCAT
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTT-AAGACATTACAA-CGC
* *
268054 TATTCAAACTTCCATATTTGAATGTAACATCTTGGATAAGTTAA
1 TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAA
268098 ACTCTACATT
Statistics
Matches: 275, Mismatches: 43, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
55 7 0.03
56 133 0.48
57 129 0.47
58 6 0.02
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (57 bp):
TATTCAAACTTCCATCTTTGAATGTAACAACTTGGATAAGTTAAGACATTACAACGC
Found at i:268011 original size:169 final size:169
Alignment explanation
Indices: 267714--268105 Score: 497
Period size: 169 Copynumber: 2.3 Consensus size: 169
267704 CTATTAAAAT
* * * * *
267714 TTATTTAAACATCCATGTTTGAATGTAAGAACTTGGATAAGTTAAGACAT-TGCAACGCTATTCA
1 TTATTCAAACATTCATATTTGAATGTAACAACTTGGATAAGTTAA-AC-TCTACAACGCTATTCA
* * *
267778 AACTTCTATCTTTGAAAGTAACAACTTTGATAATTTAAGACATTACAACGCTATTCAAACTTCCA
64 AACTTCTATCTTTGAAAGTAACAACTTGGATAAATTAAGACATTACAACACTATTCAAACTTCCA
* * * **
267843 TTTTTGAATGTAACAACTTGGATAAGTTACACTTTACAA-C-
129 TTTTTGAATGAAACAACATGGATAAGTTAAACACTA-AATCA
*
267883 TATATTCAAACATTCATATTTGAATGCAACAACTTGGATAAGTTAAACTCTACAACGCTATTCAA
1 T-TATTCAAACATTCATATTTGAATGTAACAACTTGGATAAGTTAAACTCTACAACGCTATTCAA
* ** * *
267948 ACTT-TCATCTTTGAATGTAACAACTTGGATAAATTAAGACATTGGAACATTATTTAAACTTCCA
65 ACTTCT-ATCTTTGAAAGTAACAACTTGGATAAATTAAGACATTACAACACTATTCAAACTTCCA
* *
268012 TTTTTGAATGAAACAACATGGGTAAGTTAAAGACTAAATCA
129 TTTTTGAATGAAACAACATGGATAAGTTAAACACTAAATCA
*
268053 TTATTCAAAC-TTCCATATTTGAATGTAACATCTTGGATAAGTTAAACTCTACA
1 TTATTCAAACATT-CATATTTGAATGTAACAACTTGGATAAGTTAAACTCTACA
268106 TTGCTTGAAT
Statistics
Matches: 194, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
168 6 0.03
169 148 0.76
170 40 0.21
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (169 bp):
TTATTCAAACATTCATATTTGAATGTAACAACTTGGATAAGTTAAACTCTACAACGCTATTCAAA
CTTCTATCTTTGAAAGTAACAACTTGGATAAATTAAGACATTACAACACTATTCAAACTTCCATT
TTTGAATGAAACAACATGGATAAGTTAAACACTAAATCA
Found at i:268063 original size:113 final size:112
Alignment explanation
Indices: 267715--268097 Score: 414
Period size: 113 Copynumber: 3.4 Consensus size: 112
267705 TATTAAAATT
* * * * *
267715 TATTTAAACATCCATGTTTGAATGTAAGAACTTGGATAAGTTAAGACATTGCAACGCTATTCAAA
1 TATTCAAACTTCCATATTTGAATGTAACAACTTGGATAAGTTAAGACATTGCAAC-TTATTCAAA
* * * * * *
267780 CTTCTATCTTTGAAAGTAACAACTTTGATAA-TTTAAGACATTACAACGC
65 CTTCCATATTTGAATGAAACAACTTGGATAAGTTAAAGAC--TACAACGC
* * * *
267829 TATTCAAACTTCCATTTTTGAATGTAACAACTTGGATAAGTT-ACACTTTACAACTATATTCAAA
1 TATTCAAACTTCCATATTTGAATGTAACAACTTGGATAAGTTAAGACATTGCAACT-TATTCAAA
* **
267893 CATT-CATATTTGAATGCAACAACTTGGATAAGTTAAACTCTACAACGC
65 C-TTCCATATTTGAATGAAACAACTTGGATAAGTTAAAGACTACAACGC
* * * * *
267941 TATTCAAACTTTCATCTTTGAATGTAACAACTTGGATAAATTAAGACATTGGAACATTATTTAAA
1 TATTCAAACTTCCATATTTGAATGTAACAACTTGGATAAGTTAAGACATTGCAAC-TTATTCAAA
* * * **
268006 CTTCCATTTTTGAATGAAACAACATGGGTAAGTTAAAGACTA-AATCAT
65 CTTCCATATTTGAATGAAACAACTTGGATAAGTTAAAGACTACAA-CGC
*
268054 TATTCAAACTTCCATATTTGAATGTAACATCTTGGATAAGTTAA
1 TATTCAAACTTCCATATTTGAATGTAACAACTTGGATAAGTTAA
268098 ACTCTACATT
Statistics
Matches: 226, Mismatches: 36, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
112 51 0.23
113 129 0.57
114 46 0.20
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (112 bp):
TATTCAAACTTCCATATTTGAATGTAACAACTTGGATAAGTTAAGACATTGCAACTTATTCAAAC
TTCCATATTTGAATGAAACAACTTGGATAAGTTAAAGACTACAACGC
Found at i:268267 original size:56 final size:56
Alignment explanation
Indices: 268207--268374 Score: 185
Period size: 59 Copynumber: 2.9 Consensus size: 56
268197 ATTTTATACT
* * * * *
268207 TTCAAAGATAGAAGTCTGAATAGCGTTTTAGAGTTTAGCTTATCCAAGTTGTTACA
1 TTCAAAGATAGAAGTTTGAATAGTGTTGTAGAATTTAGCTTATCCAAGTTATTACA
* * * * * *
268263 TTCAAATATAGTAGTTTGAATTGTGTCGTAGACTTTATTAACTTATCCAAGTTATTACA
1 TTCAAAGATAGAAGTTTGAATAGTGTTGTAGA--AT-TTAGCTTATCCAAGTTATTACA
*
268322 TTCAAAGATGGAAGTTTGAATAGTGTTGTAGAATTTAAG-TTATCCAAGTTATT
1 TTCAAAGATAGAAGTTTGAATAGTGTTGTAGAATTT-AGCTTATCCAAGTTATT
268375 TCATGTTGCA
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
56 41 0.45
57 2 0.02
58 1 0.01
59 47 0.52
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (56 bp):
TTCAAAGATAGAAGTTTGAATAGTGTTGTAGAATTTAGCTTATCCAAGTTATTACA
Found at i:268314 original size:59 final size:59
Alignment explanation
Indices: 268185--268374 Score: 169
Period size: 56 Copynumber: 3.3 Consensus size: 59
268175 TATTAATGAC
* * * * * ** *
268185 TTAACTTATCGAA-TTTTATACTTTCAAAGATAGAAGTCTGAATAGCGTTTTAG-A-GT-
1 TTAACTTATCCAAGTTAT-TACATTCAAAGATAGAAGTTTGAATAGTGTCGTAGAATTTA
* * * * * *
268241 TTAGCTTATCCAAGTTGTTACATTCAAATATAGTAGTTTGAATTGTGTCGTAGACTTTA
1 TTAACTTATCCAAGTTATTACATTCAAAGATAGAAGTTTGAATAGTGTCGTAGAATTTA
* *
268300 TTAACTTATCCAAGTTATTACATTCAAAGATGGAAGTTTGAATAGTGTTGTAGAA--T-
1 TTAACTTATCCAAGTTATTACATTCAAAGATAGAAGTTTGAATAGTGTCGTAGAATTTA
*
268356 TTAAGTTATCCAAGTTATT
1 TTAACTTATCCAAGTTATT
268375 TCATGTTGCA
Statistics
Matches: 108, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
56 56 0.52
57 4 0.04
58 1 0.01
59 47 0.44
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (59 bp):
TTAACTTATCCAAGTTATTACATTCAAAGATAGAAGTTTGAATAGTGTCGTAGAATTTA
Found at i:288804 original size:54 final size:54
Alignment explanation
Indices: 288721--289154 Score: 462
Period size: 55 Copynumber: 7.9 Consensus size: 54
288711 GTTCCTAGGC
**
288721 GGAAATTTCATAAACTCGTTATGAATTTCTTAAG-TTGCACACACAGTGCCAATAT
1 GGAAA-TTCATAAACTTATTATGAATTTCTT-AGTTTGCACACACAGTGCCAATAT
* * *
288776 GGAAATTCATACACTCATTATGAATTTCTTAAGTTT-CACACACAGTGCCAATAC
1 GGAAATTCATAAACTTATTATGAATTTCTT-AGTTTGCACACACAGTGCCAATAT
* * * * * *
288830 AGAAATTCATAAACTCATTATGATTTTCTTAAG-TTACACACATAGTGCCCATAT
1 GGAAATTCATAAACTTATTATGAATTTCTT-AGTTTGCACACACAGTGCCAATAT
* ** * * *
288884 GGAAATTCATAAACATATTATGAATTAATTAGTTTTGCACACACAATGCCCACAT
1 GGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAGTGCCAATAT
* * *
288939 GGAAATTCATAAACTTATTATGAATTGCTTAGTTTTGCACAAACAGTGGCC-ATAC
1 GGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAGT-GCCAATAT
** * *
288994 AAAAATTCATAAACTTATTATGAATTGCTTAGTTTTGCACACACAGTGCCCATAT
1 GGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAGTGCCAATAT
* * * * *
289049 GAAAATTCATAAACTTATTATGAATTTCTAAGTTTTACACACACAGTGCCTATAC
1 GGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAGTGCCAATAT
* * *
289104 GGAAATTAATAAACTTATTATGAATTTATTAGTTTTGCACACATAGTGCCA
1 GGAAATTCATAAACTTATTATGAATTTCTTAG-TTTGCACACACAGTGCCA
289155 TTTGGTAATC
Statistics
Matches: 330, Mismatches: 43, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
53 4 0.01
54 115 0.35
55 208 0.63
56 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (54 bp):
GGAAATTCATAAACTTATTATGAATTTCTTAGTTTGCACACACAGTGCCAATAT
Found at i:289073 original size:165 final size:164
Alignment explanation
Indices: 288755--289154 Score: 511
Period size: 165 Copynumber: 2.4 Consensus size: 164
288745 ATTTCTTAAG
* * *
288755 TTGCACACACAGTGCCAATATGGAAATTCATACACTCATTATGAATTTCTTAAG-TTT-CACACA
1 TTGCACACACAGTGCCAATATGGAAATTCATAAACTTATTATGAATTTCTT-AGTTTTGCACAAA
* * * *
288818 CAGTGCCAATACAGAAATTCATAAACTCATTATGATTTTCTTAAGTTACACACATAGTGCCCATA
65 CAGTGCCAATACAAAAATTCATAAACTCATTATGAATTGCTTAAGTTACACACACAGTGCCCATA
* *
288883 TGGAAATTCATAAACATATTATGAATTAATTAGTT
130 TGAAAATTCATAAACATATTATGAATTAATAAGTT
* * * *
288918 TTGCACACACAATGCCCACATGGAAATTCATAAACTTATTATGAATTGCTTAGTTTTGCACAAAC
1 TTGCACACACAGTGCCAATATGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACAAAC
* *
288983 AGTGGCC-ATACAAAAATTCATAAACTTATTATGAATTGCTT-AGTTTTGCACACACAGTGCCCA
66 AGT-GCCAATACAAAAATTCATAAACTCATTATGAATTGCTTAAG--TTACACACACAGTGCCCA
* **
289046 TATGAAAATTCATAAACTTATTATGAATTTCTAAGTT
128 TATGAAAATTCATAAACATATTATGAATTAATAAGTT
* * * * * * *
289083 TTACACACACAGTGCCTATACGGAAATTAATAAACTTATTATGAATTTATTAGTTTTGCACACAT
1 TTGCACACACAGTGCCAATATGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACAAAC
289148 AGTGCCA
66 AGTGCCA
289155 TTTGGTAATC
Statistics
Matches: 203, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
162 2 0.01
163 50 0.25
164 42 0.21
165 109 0.54
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (164 bp):
TTGCACACACAGTGCCAATATGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACAAAC
AGTGCCAATACAAAAATTCATAAACTCATTATGAATTGCTTAAGTTACACACACAGTGCCCATAT
GAAAATTCATAAACATATTATGAATTAATAAGTT
Found at i:289622 original size:20 final size:20
Alignment explanation
Indices: 289597--289634 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
289587 TTCCTCATAG
* *
289597 TATTGGTACTGTTCTTCCAA
1 TATTGGCACTGCTCTTCCAA
289617 TATTGGCACTGCTCTTCC
1 TATTGGCACTGCTCTTCC
289635 GGTAAAGGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (20 bp):
TATTGGCACTGCTCTTCCAA
Found at i:301044 original size:61 final size:61
Alignment explanation
Indices: 300956--301070 Score: 185
Period size: 61 Copynumber: 1.9 Consensus size: 61
300946 GAAGGTGGAT
* * *
300956 ACGACCTTATGTATTATGTCCGGATTAGCACTATAGTGTAAGCTTAGTGTAGGTGGTGGGC
1 ACGACCTTATGTATCATATCCGGATTAGCACTATAGTGTAAGCTTAGTGCAGGTGGTGGGC
* *
301017 ACGACCTTATGTGTCATATCCGGATTAGCACTATGGTGTAAGCTTAGTGCAGGT
1 ACGACCTTATGTATCATATCCGGATTAGCACTATAGTGTAAGCTTAGTGCAGGT
301071 TTAGCACTAC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 49 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (61 bp):
ACGACCTTATGTATCATATCCGGATTAGCACTATAGTGTAAGCTTAGTGCAGGTGGTGGGC
Found at i:301271 original size:46 final size:46
Alignment explanation
Indices: 301178--301488 Score: 529
Period size: 46 Copynumber: 6.8 Consensus size: 46
301168 GATAAACTGG
* * *
301178 AAAATAAACTTACGAGCTTAT-GGAAT-AATGGAAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
301222 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
*
301268 AAAATAAGCTTACTAGCTTATGGGATTAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
*
301314 AAAATAAGCTTACGAGCTTATCGGATTAAAATGGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATT-AAATGGTAAGTATATTGGT
*
301361 AAAATAAGCTTACGAGCTTATGGGATTAAATGGCAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
*
301407 AAAATAAGCTTACGAGCTTATGGGATTAAATTGTAAGTATATTGGT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
301453 AAAATAAGCTTACGAGCTTATGGGA-TAAATGGTAAG
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAG
301489 AGATTTTATC
Statistics
Matches: 253, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
44 20 0.08
45 14 0.06
46 174 0.69
47 45 0.18
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (46 bp):
AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGT
Found at i:301370 original size:139 final size:137
Alignment explanation
Indices: 301178--301488 Score: 527
Period size: 139 Copynumber: 2.3 Consensus size: 137
301168 GATAAACTGG
* * *
301178 AAAATAAACTTACGAGCTTATGGA-ATAATGGAAAGTATATTGGTAAAATAAGCTTACGAGCTTA
1 AAAATAAGCTTACGAGCTTATGGATAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTA
* *
301242 TGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACTAGCTTATGGGATTAAATGGTAAGTA
66 TGGGATTAAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTA
301307 TATTGGT
131 TATTGGT
301314 AAAATAAGCTTACGAGCTTATCGGATTAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCT
1 AAAATAAGCTTACGAGCTTAT-GGA-TAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCT
*
301379 TATGGGATTAAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATTGTAAG
64 TATGGGATTAAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAG
301444 TATATTGGT
129 TATATTGGT
301453 AAAATAAGCTTACGAGCTTATGGGAT-AAATGGTAAG
1 AAAATAAGCTTACGAGCTTAT-GGATAAAATGGTAAG
301489 AGATTTTATC
Statistics
Matches: 165, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
136 20 0.12
137 13 0.08
138 1 0.01
139 131 0.79
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (137 bp):
AAAATAAGCTTACGAGCTTATGGATAAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTA
TGGGATTAAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTA
TATTGGT
Found at i:301388 original size:93 final size:92
Alignment explanation
Indices: 301178--301488 Score: 529
Period size: 93 Copynumber: 3.4 Consensus size: 92
301168 GATAAACTGG
* * *
301178 AAAATAAACTTACGAGCTTAT-GGAAT-AATGGAAAGTATATTGGTAAAATAAGCTTACGAGCTT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTT
301241 ATGGGATTAAATGGTAAGTATATTGGT
66 ATGGGATTAAATGGTAAGTATATTGGT
*
301268 AAAATAAGCTTACTAGCTTATGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTT
*
301333 ATCGGATTAAAATGGTAAGTATATTGGT
66 ATGGGATT-AAATGGTAAGTATATTGGT
*
301361 AAAATAAGCTTACGAGCTTATGGGATTAAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTT
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTT
*
301426 ATGGGATTAAATTGTAAGTATATTGGT
66 ATGGGATTAAATGGTAAGTATATTGGT
301453 AAAATAAGCTTACGAGCTTATGGGA-TAAATGGTAAG
1 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAG
301489 AGATTTTATC
Statistics
Matches: 208, Mismatches: 10, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
90 19 0.09
91 14 0.07
92 86 0.41
93 89 0.43
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (92 bp):
AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTT
ATGGGATTAAATGGTAAGTATATTGGT
Found at i:308653 original size:2 final size:2
Alignment explanation
Indices: 308646--308794 Score: 186
Period size: 2 Copynumber: 77.5 Consensus size: 2
308636 AACAAAAATA
*
308646 AT AT AT AT AT AT AT GAT AT -T AT TT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
308688 AT AT AT -T AT TT AT AT A- AT AT AT AT AT -T AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
308727 AT AT AT AT -T AT TT AT AT AT A- AT AT AT AT AG AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
308767 AT AT AT AT AT AT -T AT TT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
308795 ATAAACCGGA
Statistics
Matches: 127, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
1 7 0.06
2 118 0.93
3 2 0.02
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (2 bp):
AT
Found at i:311406 original size:2 final size:2
Alignment explanation
Indices: 311399--311431 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
311389 TCATTCTTAT
*
311399 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
311432 GTTTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:311439 original size:14 final size:14
Alignment explanation
Indices: 311395--311431 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
311385 CCTTTCATTC
311395 TTAT-TATATATAT
1 TTATATATATATAT
*
311408 ATATATATATATAT
1 TTATATATATATAT
311422 TTATATATAT
1 TTATATATAT
311432 GTTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 3 0.14
14 18 0.86
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATATATATATAT
Found at i:311759 original size:21 final size:21
Alignment explanation
Indices: 311735--311774 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
311725 AAGACTTTAT
311735 TTTCAAAATACAAAAATGATA
1 TTTCAAAATACAAAAATGATA
**
311756 TTTCAAAATTGAAAAATGA
1 TTTCAAAATACAAAAATGA
311775 AACTAGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (21 bp):
TTTCAAAATACAAAAATGATA
Found at i:316070 original size:13 final size:13
Alignment explanation
Indices: 316052--316085 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
316042 TATATATTAA
*
316052 TTTTCAAACATTG
1 TTTTCAAACATAG
316065 TTTTCAAACATAG
1 TTTTCAAACATAG
316078 TTTTCAAA
1 TTTTCAAA
316086 ATATGACCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (13 bp):
TTTTCAAACATAG
Found at i:322546 original size:99 final size:99
Alignment explanation
Indices: 322405--322606 Score: 314
Period size: 99 Copynumber: 2.0 Consensus size: 99
322395 TTATAATATT
*
322405 ATATATATACAATAAAGCTTGAGTTGTCCCTCTAAAGAAATTGGTTAAACGCCCCGGCTTTATGG
1 ATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGAAATTGGTTAAACGCCCCGGCTTTATGG
322470 ATAAGAATCAGCTAACCTGATAAAGATGATTATA
66 ATAAGAATCAGCTAACCTGATAAAGATGATTATA
* * * * *
322504 ATATCTATATAATAAAGCTTGAGCTGTCCCTCTAAGGCAATTGGTTAAACGCCCCGGTTTTATGG
1 ATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGAAATTGGTTAAACGCCCCGGCTTTATGG
* * * *
322569 ATAAGATTCAGTTAGCCTGATAAAGGTGATTATA
66 ATAAGAATCAGCTAACCTGATAAAGATGATTATA
322603 ATAT
1 ATAT
322607 TGAGTTGTCC
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 93 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (99 bp):
ATATATATACAATAAAGCTTGAGCTGTCCCTCTAAAGAAATTGGTTAAACGCCCCGGCTTTATGG
ATAAGAATCAGCTAACCTGATAAAGATGATTATA
Found at i:323734 original size:64 final size:64
Alignment explanation
Indices: 323652--323885 Score: 362
Period size: 64 Copynumber: 3.7 Consensus size: 64
323642 CTTTCCAGCT
* *
323652 TTTAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTTAACAAATAACTTTTCAGTTTCA
1 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCA
*
323716 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGAACTCAACAAATAAC-TTTCTAGTTTCA
1 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTTC-AGTTTCA
* * * * *
323780 TTTAGAGTCAATTTTAACTTCATAGCGAAGGATATTGGACTCAACAAACAACTTTCCAGTTTCA
1 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCA
* *
323844 TTCAGAGTCAATTTCAACTTCACAACGAATGATATTGGACTC
1 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
323886 GAAGCAATGC
Statistics
Matches: 154, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
63 4 0.03
64 147 0.95
65 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (64 bp):
TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCA
Found at i:323833 original size:128 final size:124
Alignment explanation
Indices: 323528--323885 Score: 504
Period size: 128 Copynumber: 2.8 Consensus size: 124
323518 TTTTGCATCT
*
323528 TTTAGAGTCAATTTCAACTTCACGACGAAGGATATTGGACTCAACAAATAAC-TTTCTAGTTTCA
1 TTTAGAGTCAATTTCAACTTCAAG-CGAAGGATATTGGACTCAACAAATAACTTTTC-AGTTTCA
* * * ** *
323592 TTTAAAGGCAATTTCAACTTCATAGTGAAGGATA-TGGACTCAACAAATAACTTTCCAGCT
64 TTTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTCCAGCA
*
323652 TTTAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTTAACAAATAACTTTTCAGTTTCAT
1 TTTAGAGTCAATTTCAACTTCA-AGCGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCAT
* *
323717 TTAGAGTCAATTTCAACTTCACAACGAAGGATATTGAACTCAACAAATAACTTTCTAGTTTCA
65 TTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTCCAG---CA
* * *
323780 TTTAGAGTCAATTTTAACTTCATAGCGAAGGATATTGGACTCAACAAACAACTTTCCAGTTTCAT
1 TTTAGAGTCAATTTCAACTTCA-AGCGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCAT
* *
323845 TCAGAGTCAATTTCAACTTCACAACGAATGATATTGGACTC
65 TTAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTC
323886 GAAGCAATGC
Statistics
Matches: 210, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
124 84 0.40
125 27 0.13
128 99 0.47
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (124 bp):
TTTAGAGTCAATTTCAACTTCAAGCGAAGGATATTGGACTCAACAAATAACTTTTCAGTTTCATT
TAGAGTCAATTTCAACTTCACAACGAAGGATATTGGACTCAACAAATAACTTTCCAGCA
Found at i:324199 original size:121 final size:120
Alignment explanation
Indices: 323969--324238 Score: 357
Period size: 121 Copynumber: 2.2 Consensus size: 120
323959 GAAACATTTC
* * * *
323969 TTGGATTTC-ACTTCACAACGAAGGATATCCATCCAAAGCGCAACTTCACAATGAAAGATCATCC
1 TTGGATTTCAACTTCACAACGAAGGATATCCATCCAAAGCGCAACTACACAACGAAAGACCATAC
* * *
324033 ACGATTTGAACTTCACGACGAAGGATACCGTGCCACAAGCAGCATCCATCTCTAGA
66 ACGATTTCAACTTCAAGACGAAGGATACCGTGCCACAA-CAGCATCAATCTCTAGA
* * * * *
324089 TTGGATTTTAATTTCACAACGAAGGATATCCAATTCAAAGCTCAACTACACAACGAATGACCCAT
1 TTGGATTTCAACTTCACAACGAAGGATATCC-ATCCAAAGCGCAACTACACAACGAAAGA-CCAT
*
324154 ACACGATTTCAACTTCAAGACGAAGGATATCGTGACCAC-A-AGCATCAATCTCTAGA
64 ACACGATTTCAACTTCAAGACGAAGGATACCGTG-CCACAACAGCATCAATCTCTAGA
*
324210 TTGGATTTCAACTTCACAATGAAGGATAT
1 TTGGATTTCAACTTCACAACGAAGGATAT
324239 AACCGATCCA
Statistics
Matches: 130, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
120 8 0.06
121 61 0.47
122 23 0.18
123 34 0.26
124 4 0.03
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (120 bp):
TTGGATTTCAACTTCACAACGAAGGATATCCATCCAAAGCGCAACTACACAACGAAAGACCATAC
ACGATTTCAACTTCAAGACGAAGGATACCGTGCCACAACAGCATCAATCTCTAGA
Found at i:324264 original size:41 final size:39
Alignment explanation
Indices: 324207--324287 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 39
324197 ATCAATCTCT
324207 AGATTGGATTTCAACTTCACAATGAAGGATATAACCGATCC
1 AGATTGGATTTCAACTTCACAATGAAGG--ATAACCGATCC
324248 AGATTGGATTTCAACTTCACAATGAAGGATAACCGATCC
1 AGATTGGATTTCAACTTCACAATGAAGGATAACCGATCC
324287 A
1 A
324288 AAGCTCAACT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 12 0.30
41 28 0.70
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (39 bp):
AGATTGGATTTCAACTTCACAATGAAGGATAACCGATCC
Found at i:324301 original size:34 final size:37
Alignment explanation
Indices: 324217--324303 Score: 99
Period size: 41 Copynumber: 2.3 Consensus size: 37
324207 AGATTGGATT
**
324217 TCAACTTCACAATGAAGGATATAACCGATCCAGATTGGATT
1 TCAACTTCACAATGAAGGA-ATAACCGATCCAGA---GAGC
324258 TCAACTTCACAATGAAGG-ATAACCGATCCA-A-AGC
1 TCAACTTCACAATGAAGGAATAACCGATCCAGAGAGC
324292 TCAACTTCACAA
1 TCAACTTCACAA
324304 ACGAAGGAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
34 13 0.30
38 1 0.02
39 12 0.27
41 18 0.41
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (37 bp):
TCAACTTCACAATGAAGGAATAACCGATCCAGAGAGC
Found at i:324601 original size:83 final size:85
Alignment explanation
Indices: 324446--324611 Score: 192
Period size: 83 Copynumber: 2.0 Consensus size: 85
324436 GTCAGCAAAG
* *
324446 ACCTTCGAGTTCGATTACATTAAGCTCAAAGGCACATCAAATTTACAACATAGTTTAAGGCGGGA
1 ACCTTCGAGTTCGATTACATTAAGCTCAAAGGCACATCAAATTTACAACATAGCTTAAGGCGAGA
**
324511 AGGGCTATCTGTCAATAATT
66 AAAGCTATCTGTCAATAATT
* * * * * ** * *
324531 ACCTTCGAGTTTGATTCCATTCA-CTCAAGGGTATGTCAAA-TTACAGCATAGCTTAAGTCGAGA
1 ACCTTCGAGTTCGATTACATTAAGCTCAAAGGCACATCAAATTTACAACATAGCTTAAGGCGAGA
*
324594 AAAGCTATCTTTCAATAA
66 AAAGCTATCTGTCAATAA
324612 AAATTGTCGA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
83 34 0.51
84 13 0.19
85 20 0.30
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (85 bp):
ACCTTCGAGTTCGATTACATTAAGCTCAAAGGCACATCAAATTTACAACATAGCTTAAGGCGAGA
AAAGCTATCTGTCAATAATT
Done.