Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009625.1 Hibiscus syriacus cultivar Beakdansim tig00117017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6938204
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 17 of 25
Found at i:5032093 original size:38 final size:37
Alignment explanation
Indices: 5031986--5032089 Score: 99
Period size: 38 Copynumber: 2.8 Consensus size: 37
5031976 TTCACAACGA
*
5031986 AATATAATATAATACAC-TTAT--TTTAATAATTAAAT
1 AATATAAT-TAATAAACTTTATCATTTAATAATTAAAT
* * *
5032021 AATATTATTAATAAACTTTATCGTTTGAATAATTAATT
1 AATATAATTAATAAACTTTATCATTT-AATAATTAAAT
* *
5032059 ATTATAATTAAT-AACATTTATTATTTAATAA
1 AATATAATTAATAAAC-TTTATCATTTAATAA
5032090 ATTATAGGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
34 7 0.12
35 11 0.19
37 11 0.19
38 28 0.49
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (37 bp):
AATATAATTAATAAACTTTATCATTTAATAATTAAAT
Found at i:5045672 original size:23 final size:23
Alignment explanation
Indices: 5045646--5045716 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
5045636 TTTACCACAG
* *
5045646 CACGTATAAATGCACCGAAGTGC
1 CACGTAGAATTGCACCGAAGTGC
*
5045669 CACGTAGAATTACACCGAAGTGC
1 CACGTAGAATTGCACCGAAGTGC
* *
5045692 CGCGTAGAATTGCACTGAAGTGC
1 CACGTAGAATTGCACCGAAGTGC
5045715 CA
1 CA
5045717 TATAAAATGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.18
Consensus pattern (23 bp):
CACGTAGAATTGCACCGAAGTGC
Found at i:5047299 original size:20 final size:20
Alignment explanation
Indices: 5047274--5047311 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5047264 TTCCCCTTGA
5047274 AGTGCAATGATACATTCTAC
1 AGTGCAATGATACATTCTAC
* *
5047294 AGTGCATTGATGCATTCT
1 AGTGCAATGATACATTCT
5047312 TTAACATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (20 bp):
AGTGCAATGATACATTCTAC
Found at i:5065961 original size:29 final size:29
Alignment explanation
Indices: 5065866--5065953 Score: 167
Period size: 29 Copynumber: 3.0 Consensus size: 29
5065856 TATTTCTATT
*
5065866 ATAGGTCATTGGGTGCTACATTTCATTTA
1 ATAGCTCATTGGGTGCTACATTTCATTTA
5065895 ATAGCTCATTGGGTGCTACATTTCATTTA
1 ATAGCTCATTGGGTGCTACATTTCATTTA
5065924 ATAGCTCATTGGGTGCTACATTTCATTTA
1 ATAGCTCATTGGGTGCTACATTTCATTTA
5065953 A
1 A
5065954 AAGGTCATGG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 58 1.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (29 bp):
ATAGCTCATTGGGTGCTACATTTCATTTA
Found at i:5077735 original size:14 final size:14
Alignment explanation
Indices: 5077718--5077776 Score: 50
Period size: 13 Copynumber: 4.3 Consensus size: 14
5077708 CATATACAGA
5077718 AAAATAACAAAAAG
1 AAAATAACAAAAAG
5077732 AAAAATAAC-AAAAG
1 -AAAATAACAAAAAG
* * *
5077746 AAAGTAAAAAAAAT
1 AAAATAACAAAAAG
* *
5077760 AAAA-ACCAAAAAT
1 AAAATAACAAAAAG
5077773 AAAA
1 AAAA
5077777 AAAATAACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 17 0.46
14 12 0.32
15 8 0.22
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.08
Consensus pattern (14 bp):
AAAATAACAAAAAG
Found at i:5077735 original size:15 final size:15
Alignment explanation
Indices: 5077715--5077789 Score: 66
Period size: 15 Copynumber: 5.1 Consensus size: 15
5077705 AAACATATAC
5077715 AGAAAAATAACAAAA
1 AGAAAAATAACAAAA
5077730 AGAAAAATAAC-AAA
1 AGAAAAATAACAAAA
* *
5077744 AG-AAAGTAAAAAAA
1 AGAAAAATAACAAAA
* *
5077758 ATAAAAACCAA-AAATA
1 AGAAAAA-TAACAAA-A
*
5077774 AAAAAAATAACAAAA
1 AGAAAAATAACAAAA
5077789 A
1 A
5077790 AATATAATAT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
13 6 0.12
14 9 0.19
15 21 0.44
16 12 0.25
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.08
Consensus pattern (15 bp):
AGAAAAATAACAAAA
Found at i:5077760 original size:22 final size:21
Alignment explanation
Indices: 5077732--5077796 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
5077722 TAACAAAAAG
*
5077732 AAAAATAACAAAAGAAAGTAAA
1 AAAAATAACAAAA-AAAATAAA
5077754 AAAAATAA-AAACCAAAAATAAA
1 AAAAATAACAAA--AAAAATAAA
5077776 AAAAATAACAAAAAAATATAA
1 AAAAATAACAAAAAAA-ATAA
5077797 TATGTAGCGC
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
21 7 0.18
22 27 0.71
23 4 0.11
ACGTcount: A:0.80, C:0.06, G:0.03, T:0.11
Consensus pattern (21 bp):
AAAAATAACAAAAAAAATAAA
Found at i:5077776 original size:19 final size:18
Alignment explanation
Indices: 5077717--5077789 Score: 58
Period size: 18 Copynumber: 3.8 Consensus size: 18
5077707 ACATATACAG
*
5077717 AAAAATAACAAAAAGAAA
1 AAAAATAACAAAAATAAA
* *
5077735 AATAACAA-AAGAAAGTAAA
1 AAAAATAACAA-AAA-TAAA
5077754 AAAAATAAAAACCAAAAATAAA
1 AAAAAT---AA-CAAAAATAAA
5077776 AAAAATAACAAAAA
1 AAAAATAACAAAAA
5077790 AATATAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
17 2 0.05
18 15 0.35
19 9 0.21
22 12 0.28
23 3 0.07
24 2 0.05
ACGTcount: A:0.81, C:0.07, G:0.04, T:0.08
Consensus pattern (18 bp):
AAAAATAACAAAAATAAA
Found at i:5078780 original size:3 final size:3
Alignment explanation
Indices: 5078772--5078813 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
5078762 TATTTTAGGG
5078772 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5078814 CCTATATATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5095653 original size:94 final size:94
Alignment explanation
Indices: 5095474--5095654 Score: 208
Period size: 94 Copynumber: 1.9 Consensus size: 94
5095464 GATACCAAGC
* * * *
5095474 AAACATCGAATCTAATTTTGGTATCGATACCGTAAGGGGGTAACAGTACCTTAGTAAGGTAGTAT
1 AAACATCGAACCTAATTTTGGTATCGATACCGTAAGGGAGTAACAGTACCCTAGTAAGGAAGTAT
* * *
5095539 TGATACCATGGTAAGGGTATCGTAGCATG
66 CGATACCAGGGTAAGAGTATCGTAGCATG
* *
5095568 AAACATCGAACCTAATTTTGGTATCGATACCAGGT-A-GGAGTATCAGTACCCTAGTTTA-GAAG
1 AAACATCGAACCTAATTTTGGTATCGATACC--GTAAGGGAGTAACAGTACCCTAG-TAAGGAAG
*
5095630 TATCGATACTAGGGT-AGTAGTATCG
63 TATCGATACCAGGGTAAG-AGTATCG
5095655 ATACTTCAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
93 2 0.03
94 66 0.90
95 3 0.04
96 2 0.03
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (94 bp):
AAACATCGAACCTAATTTTGGTATCGATACCGTAAGGGAGTAACAGTACCCTAGTAAGGAAGTAT
CGATACCAGGGTAAGAGTATCGTAGCATG
Found at i:5096176 original size:45 final size:44
Alignment explanation
Indices: 5096107--5096413 Score: 305
Period size: 45 Copynumber: 6.9 Consensus size: 44
5096097 AAAGGATGCC
* *
5096107 ATAGTTGAAATGTTTATGAGTACATTATCAATAGAAAATCATACT
1 ATAGTTGAAATGTATATGAGTACATTATCAACAGAAAAT-ATACT
* * * *
5096152 TTAGTTGAAATGTATATGAATACATTATCAACATAAAAGTATGCT
1 ATAGTTGAAATGTATATGAGTACATTATCAACAGAAAA-TATACT
* * * * * * *
5096197 AGAGCTGAAATGCATAT-AGGTGCATTATCAACAGAAGAGTATGCC
1 ATAGTTGAAATGTATATGA-GTACATTATCAACAGAA-AATATACT
* * *
5096242 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAACATACA
1 ATAGTTGAAATGTATATGAGTACATTATCAACAG-AAAATATACT
* *
5096287 ATAGTTGAAATGTATATGGGTACATTGTCAACAGAAAAATATACT
1 ATAGTTGAAATGTATATGAGTACATTATCAACAG-AAAATATACT
* * *
5096332 ATAGTTGAAATGTGTATTG-TTAC-TTATCAACAGAAAACTATGCT
1 ATAGTTGAAATGTATA-TGAGTACATTATCAACAGAAAA-TATACT
* * *
5096376 CTAGTTGAAATGCATATGGGTACATTATCAACAGAAAA
1 ATAGTTGAAATGTATATGAGTACATTATCAACAGAAAA
5096414 GATGTTATAG
Statistics
Matches: 218, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
43 6 0.03
44 31 0.14
45 175 0.80
46 6 0.03
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (44 bp):
ATAGTTGAAATGTATATGAGTACATTATCAACAGAAAATATACT
Found at i:5096253 original size:135 final size:134
Alignment explanation
Indices: 5096102--5096413 Score: 401
Period size: 135 Copynumber: 2.3 Consensus size: 134
5096092 GCATGAAAGG
* * * * **
5096102 ATGCCATAGTTGAAATGTTTATGAGTACATTATCAATAGAAAATCATACTTTAGTTGAAATGTAT
1 ATGCCATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAACATACAATAGTTGAAATGTAT
* * * *
5096167 ATGAATACATTATCAACATAAAAGTATGCTAGAGCTGAAATGCATATAGGTGCATTATCAACAGA
66 ATGAATACATTATCAACAGAAAAATATACTAGAGCTGAAATGCATATAGGTAC-TTATCAACAGA
* *
5096232 AGAGT
130 AAACT
5096237 ATGCCATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAACATACAATAGTTGAAATGTAT
1 ATGCCATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAACATACAATAGTTGAAATGTAT
** * * * ** * *
5096302 ATGGGTACATTGTCAACAGAAAAATATACTATAGTTGAAATGTGTATTGTTACTTATCAACAGAA
66 ATGAATACATTATCAACAGAAAAATATACTAGAGCTGAAATGCATATAGGTACTTATCAACAGAA
5096367 AACT
131 AACT
*
5096371 ATGCTC-TAGTTGAAATGCATATGGGTACATTATCAACAGAAAA
1 ATGC-CATAGTTGAAATGTATATGGGTACATTATCAACAGAAAA
5096414 GATGTTATAG
Statistics
Matches: 154, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
134 54 0.35
135 100 0.65
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (134 bp):
ATGCCATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAACATACAATAGTTGAAATGTAT
ATGAATACATTATCAACAGAAAAATATACTAGAGCTGAAATGCATATAGGTACTTATCAACAGAA
AACT
Found at i:5096266 original size:90 final size:90
Alignment explanation
Indices: 5096102--5096413 Score: 340
Period size: 90 Copynumber: 3.5 Consensus size: 90
5096092 GCATGAAAGG
* ** * * **
5096102 ATGCCATAGTTGAAATGTTTATGAGTACATTATCAATAG-AAAATCATACTTTAGTTGAAATGTA
1 ATGCTATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAAT-ATACCATAGTTGAAATGTA
* * *
5096166 TATGAATACATTATCAACATAAAAGT
65 TATGGATACATTATCAACAGAAAAAT
* * * * * * *
5096192 ATGCTAGAGCTGAAATGCATATAGGTGCATTATCAACAGAAGAGTATGCCATAGTTGAAATGTAT
1 ATGCTATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAATATACCATAGTTGAAATGTAT
* *
5096257 ATGGGTACATTATCAACAGAAAAAC
66 ATGGATACATTATCAACAGAAAAAT
* * * * * *
5096282 ATACAATAGTTGAAATGTATATGGGTACATTGTCAACAGAAAAATATACTATAGTTGAAATGTGT
1 ATGCTATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAATATACCATAGTTGAAATGTAT
* * *
5096347 ATTGTTAC-TTATCAACAGAAAACT
66 ATGGATACATTATCAACAGAAAAAT
*
5096371 ATGCTCTAGTTGAAATGCATATGGGTACATTATCAACAGAAAA
1 ATGCTATAGTTGAAATGCATATGGGTACATTATCAACAGAAAA
5096414 GATGTTATAG
Statistics
Matches: 180, Mismatches: 41, Indels: 3
0.80 0.18 0.01
Matches are distributed among these distances:
89 52 0.29
90 125 0.69
91 3 0.02
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (90 bp):
ATGCTATAGTTGAAATGCATATGGGTACATTATCAACAGAAAAATATACCATAGTTGAAATGTAT
ATGGATACATTATCAACAGAAAAAT
Found at i:5102587 original size:95 final size:96
Alignment explanation
Indices: 5102412--5102589 Score: 254
Period size: 95 Copynumber: 1.9 Consensus size: 96
5102402 CCATTGAGGC
* *
5102412 AGTATTGATACCATGGTAAGGGTATCGATACCAAGCAAACATCAAATCTAATTTTGGTATCGATA
1 AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAAACATCAAACCTAATTTTGGTATCGATA
*
5102477 CCGTAAGGGGATATCGGTTCCATAGTAAGGT
66 CCGTAAGGAGATATCGGTTCCATAGTAAGGT
* * * *
5102508 AGTATCGATATCATGTTAAGGGTATCGATACCATG-AAACATCGAACCTAATTTTGGTATCGATA
1 AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAAACATCAAACCTAATTTTGGTATCGATA
5102572 CCAAGT-AGGAG-TATCGGT
66 CC--GTAAGGAGATATCGGT
5102590 ACCCTAGTGT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
95 36 0.49
96 35 0.48
97 2 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (96 bp):
AGTATCGATACCATGGTAAGGGTATCGATACCAAGCAAACATCAAACCTAATTTTGGTATCGATA
CCGTAAGGAGATATCGGTTCCATAGTAAGGT
Found at i:5102621 original size:20 final size:20
Alignment explanation
Indices: 5102576--5102634 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
5102566 TCGATACCAA
* *
5102576 GTAGGAGTATCGGTACCCTAGT
1 GTAGAAGTATCGGTA--CTAGG
5102598 GTAGAAGTATCGGTACTAGG
1 GTAGAAGTATCGGTACTAGG
*
5102618 GTAGTAA-TATCGATACT
1 GTAG-AAGTATCGGTACT
5102635 TCAGAACCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 17 0.52
21 2 0.06
22 14 0.42
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
GTAGAAGTATCGGTACTAGG
Found at i:5103133 original size:45 final size:45
Alignment explanation
Indices: 5103081--5103389 Score: 424
Period size: 45 Copynumber: 6.9 Consensus size: 45
5103071 AAGGGATGCC
*
5103081 ATAGTTGAAATGTATATGGGTACATTATCAACA-AAAAATCATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGT-ATACT
* * *
5103126 TTTGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATGCT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* * * * * * *
5103171 AGAGTTGAAATGCATATGGGTGCATTGTCAACAGAAGAGTATGCC
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
* *
5103216 ATAATTGAAATGTATATGGGTACATTATCAACAGAAAAGCATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
*
5103261 ATAGTTGAAATGTATATGGGTACATTATCAACATAAAAGTATACT
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
*
5103306 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAACGTATGA-T
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTAT-ACT
** *
5103351 ATAGTTGAAATACATATGGGTGCATTATCAACAGAAAAG
1 ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAG
5103390 ATGTTATAGT
Statistics
Matches: 232, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
45 226 0.97
46 6 0.03
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.30
Consensus pattern (45 bp):
ATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACT
Found at i:5103286 original size:135 final size:135
Alignment explanation
Indices: 5103044--5103389 Score: 480
Period size: 135 Copynumber: 2.6 Consensus size: 135
5103034 AAAAAATACT
*** *
5103044 AATGCATATGGGTGCATTATTGGCATGAAG-GGATGCCATAGTTGAAATGTATATGGGTACATTA
1 AATGCATATGGGTGCATTATCAACA-GAAGAGTATGCCATAGTTGAAATGTATATGGGTACATTA
* * * * *
5103108 TCAACAAAAAATCATACTTTTGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATGCTAG
65 TCAACAGAAAAGCATACTATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACTAG
5103173 AGTTGA
130 AGTTGA
* *
5103179 AATGCATATGGGTGCATTGTCAACAGAAGAGTATGCCATAATTGAAATGTATATGGGTACATTAT
1 AATGCATATGGGTGCATTATCAACAGAAGAGTATGCCATAGTTGAAATGTATATGGGTACATTAT
* *
5103244 CAACAGAAAAGCATACTATAGTTGAAATGTATATGGGTACATTATCAACATAAAAGTATACTATA
66 CAACAGAAAAGCATACTATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACTAGA
5103309 GTTGA
131 GTTGA
* * ** ** *
5103314 AATGTATATGGGTACATTATCAACAGAA-ACGTATGATATAGTTGAAATACATATGGGTGCATTA
1 AATGCATATGGGTGCATTATCAACAGAAGA-GTATGCCATAGTTGAAATGTATATGGGTACATTA
5103378 TCAACAGAAAAG
65 TCAACAGAAAAG
5103390 ATGTTATAGT
Statistics
Matches: 187, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
134 5 0.03
135 182 0.97
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.30
Consensus pattern (135 bp):
AATGCATATGGGTGCATTATCAACAGAAGAGTATGCCATAGTTGAAATGTATATGGGTACATTAT
CAACAGAAAAGCATACTATAGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACTAGA
GTTGA
Found at i:5103423 original size:45 final size:44
Alignment explanation
Indices: 5103076--5103428 Score: 343
Period size: 45 Copynumber: 7.8 Consensus size: 44
5103066 GCATGAAGGG
* * *
5103076 ATGCCATAGTTGAAATGTATATGGGTACATTATCAACA-AAAAAT
1 ATGCTATAGTTGAAATGCATATGGGTA-ATTATCAACAGAAAAGT
* * * *
5103120 CATACTTTTGTTGAAATGTATATGGGTACATTATCAACAGAAAAGT
1 -ATGCTATAGTTGAAATGCATATGGGTA-ATTATCAACAGAAAAGT
* * * *
5103166 ATGCTAGAGTTGAAATGCATATGGGTGCATTGTCAACAGAAGAGT
1 ATGCTATAGTTGAAATGCATATGGGT-AATTATCAACAGAAAAGT
* * * *
5103211 ATGCCATAATTGAAATGTATATGGGTACATTATCAACAGAAAAGC
1 ATGCTATAGTTGAAATGCATATGGGTA-ATTATCAACAGAAAAGT
* * *
5103256 ATACTATAGTTGAAATGTATATGGGTACATTATCAACATAAAAGT
1 ATGCTATAGTTGAAATGCATATGGGTA-ATTATCAACAGAAAAGT
* * *
5103301 ATACTATAGTTGAAATGTATATGGGTACATTATCAACAGAAACGT
1 ATGCTATAGTTGAAATGCATATGGGTA-ATTATCAACAGAAAAGT
* * *
5103346 ATGATATAGTTGAAATACATATGGGTGCATTATCAACAGAAAAG-
1 ATGCTATAGTTGAAATGCATATGGGT-AATTATCAACAGAAAAGT
* * *
5103390 ATGTTATAGTTTAAAGTGCATAATGGTGT-ATTATAAACA
1 ATGCTATAGTTGAAA-TGCAT-ATGG-GTAATTATCAACA
5103429 TAAATGGAGG
Statistics
Matches: 263, Mismatches: 38, Indels: 14
0.83 0.12 0.04
Matches are distributed among these distances:
44 13 0.05
45 239 0.91
46 9 0.03
47 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (44 bp):
ATGCTATAGTTGAAATGCATATGGGTAATTATCAACAGAAAAGT
Found at i:5103423 original size:135 final size:134
Alignment explanation
Indices: 5103044--5103432 Score: 408
Period size: 135 Copynumber: 2.9 Consensus size: 134
5103034 AAAAAATACT
* *** * * * **
5103044 AATGCATATGGGTGCATTATTGGCATGAAG-GGATGCCATAGTTGAAATGTATATGGGTACATTA
1 AATGCATATGGGTACATTATCAACA-GAAGAGTATGACATAATTGAAATACATATGGGTACATTA
* * * * * * *
5103108 TCAACAAAAAATCATACTTTTGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATGCTAG
65 TCAACAGAAAAGCATACTATAGTTGAAATGCATATGGGTA-ATTATCAACATAAAAGTATACTAG
5103173 AGTTGA
129 AGTTGA
* * * **
5103179 AATGCATATGGGTGCATTGTCAACAGAAGAGTATGCCATAATTGAAATGTATATGGGTACATTAT
1 AATGCATATGGGTACATTATCAACAGAAGAGTATGACATAATTGAAATACATATGGGTACATTAT
* *
5103244 CAACAGAAAAGCATACTATAGTTGAAATGTATATGGGTACATTATCAACATAAAAGTATACTATA
66 CAACAGAAAAGCATACTATAGTTGAAATGCATATGGGTA-ATTATCAACATAAAAGTATACTAGA
5103309 GTTGA
130 GTTGA
* * * *
5103314 AATGTATATGGGTACATTATCAACAGAA-ACGTATGATATAGTTGAAATACATATGGGTGCATTA
1 AATGCATATGGGTACATTATCAACAGAAGA-GTATGACATAATTGAAATACATATGGGTACATTA
** * *
5103378 TCAACAGAAAAG-ATGTTATAGTTTAAAGTGCATAATGGTGT-ATTATAAACATAAA
65 TCAACAGAAAAGCATACTATAGTTGAAA-TGCAT-ATGG-GTAATTATCAACATAAA
5103433 TGGAGGTTAC
Statistics
Matches: 222, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
134 17 0.08
135 199 0.90
136 4 0.02
137 2 0.01
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (134 bp):
AATGCATATGGGTACATTATCAACAGAAGAGTATGACATAATTGAAATACATATGGGTACATTAT
CAACAGAAAAGCATACTATAGTTGAAATGCATATGGGTAATTATCAACATAAAAGTATACTAGAG
TTGA
Found at i:5106988 original size:15 final size:15
Alignment explanation
Indices: 5106964--5107035 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 15
5106954 GAATAAGTGC
*
5106964 AAGAATAGAAAGACG
1 AAGAAAAGAAAGACG
5106979 AAGAAAAGAAAGA--
1 AAGAAAAGAAAGACG
* *
5106992 AATGGAGAAG-AAG-TG
1 AA--GAAAAGAAAGACG
*
5107007 CAAGAATAGAAAGACG
1 -AAGAAAAGAAAGACG
5107023 AAGAAAAGAAAGA
1 AAGAAAAGAAAGA
5107036 AATGGAGAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
13 2 0.05
14 7 0.16
15 32 0.73
16 3 0.07
ACGTcount: A:0.62, C:0.04, G:0.28, T:0.06
Consensus pattern (15 bp):
AAGAAAAGAAAGACG
Found at i:5107014 original size:44 final size:44
Alignment explanation
Indices: 5106951--5107048 Score: 187
Period size: 44 Copynumber: 2.2 Consensus size: 44
5106941 GATGGTGAAG
*
5106951 GGAGAATAAGTGCAAGAATAGAAAGACGAAGAAAAGAAAGAAAT
1 GGAGAAGAAGTGCAAGAATAGAAAGACGAAGAAAAGAAAGAAAT
5106995 GGAGAAGAAGTGCAAGAATAGAAAGACGAAGAAAAGAAAGAAAT
1 GGAGAAGAAGTGCAAGAATAGAAAGACGAAGAAAAGAAAGAAAT
5107039 GGAGAAGAAG
1 GGAGAAGAAG
5107049 AAGAAGATTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.58, C:0.04, G:0.31, T:0.07
Consensus pattern (44 bp):
GGAGAAGAAGTGCAAGAATAGAAAGACGAAGAAAAGAAAGAAAT
Found at i:5107055 original size:20 final size:20
Alignment explanation
Indices: 5106978--5107053 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 20
5106968 ATAGAAAGAC
5106978 GAAGAAAAGAAAGAAATGGA
1 GAAGAAAAGAAAGAAATGGA
5106998 GAAGAAGTGCAAGAATAGAAA--GA
1 GAAGAA----AAGAA-AGAAATGGA
5107021 CGAAGAAAAGAAAGAAATGGA
1 -GAAGAAAAGAAAGAAATGGA
5107042 GAAGAAGAAGAA
1 GAAGAA-AAGAA
5107054 GATTGACATT
Statistics
Matches: 47, Mismatches: 0, Indels: 17
0.73 0.00 0.27
Matches are distributed among these distances:
19 5 0.11
20 17 0.36
21 7 0.15
23 2 0.04
24 11 0.23
25 5 0.11
ACGTcount: A:0.62, C:0.03, G:0.30, T:0.05
Consensus pattern (20 bp):
GAAGAAAAGAAAGAAATGGA
Found at i:5112255 original size:763 final size:763
Alignment explanation
Indices: 5110791--5112321 Score: 2929
Period size: 763 Copynumber: 2.0 Consensus size: 763
5110781 TAATTGCATG
*
5110791 AGTTGTTGGATCATGGTTTTATTTGTACGAGTATTTCTCTGTGGGGTGTTCCAGTTTTTTTTCAA
1 AGTTGTTGGATCATGGTTTTATTTGTACGAGTATTTCTCCGTGGGGTGTTCCAGTTTTTTTTCAA
5110856 GAAGAAGAAGGTCGGTATGATGCCTATGTGTATCAATTATCATTAGTTGAACAAGGTGAGGATCA
66 GAAGAAGAAGGTCGGTATGATGCCTATGTGTATCAATTATCATTAGTTGAACAAGGTGAGGATCA
* *
5110921 AGAATCGATATCCTTTATTAAGGATTGATGACTTTTTTGACTAGTTTTGAGATTCTAGGGTATTT
131 AGAATCGATATCCTTTATTAAGGATTGATGACTTGTTTGACTAGTTTTAAGATTCTAGGGTATTT
5110986 TCTAAGATCGATTTACATTTTAGGTATTATCACCTGAATGTTGGTGAGCTGAATGTGATTAAGAT
196 TCTAAGATCGATTTACATTTTAGGTATTATCACCTGAATGTTGGTGAGCTGAATGTGATTAAGAT
5111051 TGGTTTTAGGACGCACTATGGTCATTATAAGTTTTTGGTGATGTAGTTTAGGTTGATGAATACAC
261 TGGTTTTAGGACGCACTATGGTCATTATAAGTTTTTGGTGATGTAGTTTAGGTTGATGAATACAC
5111116 CTACTAGTTTCATGGATTTGATGAATTGTGTGCTATATCAGTATCTTGATAGTTTCATTGTGGTG
326 CTACTAGTTTCATGGATTTGATGAATTGTGTGCTATATCAGTATCTTGATAGTTTCATTGTGGTG
5111181 TTAATTGATGATATTTGGTCTATTCAAGCTCGAAGGAAGAGCATGATTCATATCTTAGGTTTGTT
391 TTAATTGATGATATTTGGTCTATTCAAGCTCGAAGGAAGAGCATGATTCATATCTTAGGTTTGTT
5111246 TTGCGAGTGCTAAGGGAGAAGAAGTTGTATGAGAAGTTTTTAAAGTGTGAGTTTTGGTTGAGCGA
456 TTGCGAGTGCTAAGGGAGAAGAAGTTGTATGAGAAGTTTTTAAAGTGTGAGTTTTGGTTGAGCGA
5111311 GGTGGCGTTTCTTGGTCATGTTGTTTTAGATGAGGGTATCTGGGATGATCCGAATAAGATTAAGG
521 GGTGGCGTTTCTTGGTCATGTTGTTTTAGATGAGGGTATCTGGGATGATCCGAATAAGATTAAGG
*
5111376 TGATAATTGAGTGGAAACTGCTTAAGAGTGTTACTGAAGTTCGTAGTTTTTTTGGGTTTTTCTAG
586 TGATAATTGAGTGGAAACTGCTTAAGAGTGTTACTGAAGTTCGTAGTTTTTCTGGGTTTTTCTAG
5111441 ATATTATCGTCATTTTGTGGAAGGTTATTCTCTTATTGATGTTTCTTTAACAAGGTTGTTGTAAA
651 ATATTATCGTCATTTTGTGGAAGGTTATTCTCTTATTGATGTTTCTTTAACAAGGTTGTTGTAAA
*
5111506 AGAATGCTAAGTTTGAGTAAACGGAGGAGACACATAAGAGTTTTCAGA
716 AGAATGCTAAGTTTGAGTAAACGGAGGAGACACATAAGAATTTTCAGA
5111554 AGTTGTTGGATCATGGTTTTATTTGTACGAGTATTTCTCCGTGGGGTGTTCCAGTTTTTTTTCAA
1 AGTTGTTGGATCATGGTTTTATTTGTACGAGTATTTCTCCGTGGGGTGTTCCAGTTTTTTTTCAA
* *
5111619 GAAGAAGAAGGTCGGTATGATGCCTATGTGTATCGATTATCATTAGTTGAACAAGGTGAGGATTA
66 GAAGAAGAAGGTCGGTATGATGCCTATGTGTATCAATTATCATTAGTTGAACAAGGTGAGGATCA
* *
5111684 AGAATCGATATCCTTTGTTAAGGATTGATGACTTGTTTGATTAGTTTTAAGATTCTAGGGTATTT
131 AGAATCGATATCCTTTATTAAGGATTGATGACTTGTTTGACTAGTTTTAAGATTCTAGGGTATTT
*
5111749 TCTAAGATCGATTTACATTTTAGGTATTATCACCTGAATGTTGGTGAGCTGAATGTGATTAATAT
196 TCTAAGATCGATTTACATTTTAGGTATTATCACCTGAATGTTGGTGAGCTGAATGTGATTAAGAT
5111814 TGGTTTTAGGACGCACTATGGTCATTATAAGTTTTTGGTGATGTAGTTTAGGTTGATGAATACAC
261 TGGTTTTAGGACGCACTATGGTCATTATAAGTTTTTGGTGATGTAGTTTAGGTTGATGAATACAC
5111879 CTACTAGTTTCATGGATTTGATGAATTGTGTGCTATATCAGTATCTTGATAGTTTCATTGTGGTG
326 CTACTAGTTTCATGGATTTGATGAATTGTGTGCTATATCAGTATCTTGATAGTTTCATTGTGGTG
5111944 TTAATTGATGATATTTGGTCTATTCAAGCTCGAAGGAAGAGCATGATTCATATCTTAGGTTTGTT
391 TTAATTGATGATATTTGGTCTATTCAAGCTCGAAGGAAGAGCATGATTCATATCTTAGGTTTGTT
*
5112009 TTGCGAGTGTTAAGGGAGAAGAAGTTGTATGAGAAGTTTTTAAAGTGTGAGTTTTGGTTGAGCGA
456 TTGCGAGTGCTAAGGGAGAAGAAGTTGTATGAGAAGTTTTTAAAGTGTGAGTTTTGGTTGAGCGA
*
5112074 GGTGGCGTTTCTTGGTCATGTTGTTTTAGATGAGGGTATCTGGGTTGATCCGAATAAGATTAAGG
521 GGTGGCGTTTCTTGGTCATGTTGTTTTAGATGAGGGTATCTGGGATGATCCGAATAAGATTAAGG
5112139 TGATAATTGAGTGGAAACTGCTTAAGAGTGTTACTGAAGTTCGTAGTTTTTCTGGGTTTTTCTAG
586 TGATAATTGAGTGGAAACTGCTTAAGAGTGTTACTGAAGTTCGTAGTTTTTCTGGGTTTTTCTAG
5112204 ATATTATCGTCATTTTGTGGAAGGGTT-TTCTCTTATTGATGTTTCTTTAACAAGGTTGTTGTAA
651 ATATTATCGTCATTTTGTGGAA-GGTTATTCTCTTATTGATGTTTCTTTAACAAGGTTGTTGTAA
*
5112268 AAGAATGCTAAGTTTGAGTAGACGGAGGAGACACATAAGAATTTTCAGA
715 AAGAATGCTAAGTTTGAGTAAACGGAGGAGACACATAAGAATTTTCAGA
5112317 AGTTG
1 AGTTG
5112322 AAGTCAGTTT
Statistics
Matches: 754, Mismatches: 13, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
763 750 0.99
764 4 0.01
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (763 bp):
AGTTGTTGGATCATGGTTTTATTTGTACGAGTATTTCTCCGTGGGGTGTTCCAGTTTTTTTTCAA
GAAGAAGAAGGTCGGTATGATGCCTATGTGTATCAATTATCATTAGTTGAACAAGGTGAGGATCA
AGAATCGATATCCTTTATTAAGGATTGATGACTTGTTTGACTAGTTTTAAGATTCTAGGGTATTT
TCTAAGATCGATTTACATTTTAGGTATTATCACCTGAATGTTGGTGAGCTGAATGTGATTAAGAT
TGGTTTTAGGACGCACTATGGTCATTATAAGTTTTTGGTGATGTAGTTTAGGTTGATGAATACAC
CTACTAGTTTCATGGATTTGATGAATTGTGTGCTATATCAGTATCTTGATAGTTTCATTGTGGTG
TTAATTGATGATATTTGGTCTATTCAAGCTCGAAGGAAGAGCATGATTCATATCTTAGGTTTGTT
TTGCGAGTGCTAAGGGAGAAGAAGTTGTATGAGAAGTTTTTAAAGTGTGAGTTTTGGTTGAGCGA
GGTGGCGTTTCTTGGTCATGTTGTTTTAGATGAGGGTATCTGGGATGATCCGAATAAGATTAAGG
TGATAATTGAGTGGAAACTGCTTAAGAGTGTTACTGAAGTTCGTAGTTTTTCTGGGTTTTTCTAG
ATATTATCGTCATTTTGTGGAAGGTTATTCTCTTATTGATGTTTCTTTAACAAGGTTGTTGTAAA
AGAATGCTAAGTTTGAGTAAACGGAGGAGACACATAAGAATTTTCAGA
Found at i:5115551 original size:13 final size:13
Alignment explanation
Indices: 5115533--5115636 Score: 138
Period size: 13 Copynumber: 8.0 Consensus size: 13
5115523 GTCATAAATC
5115533 TATGACGCACATT
1 TATGACGCACATT
5115546 TATGACAG-ACATT
1 TATGAC-GCACATT
*
5115559 TATGACACACATT
1 TATGACGCACATT
*
5115572 TATGACGCGCATT
1 TATGACGCACATT
*
5115585 TATGACACACATT
1 TATGACGCACATT
*
5115598 TATGACACACATT
1 TATGACGCACATT
*
5115611 TATGACGCGCATT
1 TATGACGCACATT
*
5115624 TATGACGCGCATT
1 TATGACGCACATT
5115637 GCGCGTCATT
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
13 81 0.99
14 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (13 bp):
TATGACGCACATT
Found at i:5115577 original size:39 final size:39
Alignment explanation
Indices: 5115533--5115629 Score: 176
Period size: 39 Copynumber: 2.5 Consensus size: 39
5115523 GTCATAAATC
* *
5115533 TATGACGCACATTTATGACAGACATTTATGACACACATT
1 TATGACGCGCATTTATGACACACATTTATGACACACATT
5115572 TATGACGCGCATTTATGACACACATTTATGACACACATT
1 TATGACGCGCATTTATGACACACATTTATGACACACATT
5115611 TATGACGCGCATTTATGAC
1 TATGACGCGCATTTATGAC
5115630 GCGCATTGCG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (39 bp):
TATGACGCGCATTTATGACACACATTTATGACACACATT
Found at i:5115707 original size:98 final size:99
Alignment explanation
Indices: 5115595--5115779 Score: 264
Period size: 98 Copynumber: 1.9 Consensus size: 99
5115585 TATGACACAC
* * * *
5115595 ATTTATGACACACATTTATGACGCGCATTTATGACGCGCATTGCGCGTCATTGAAGCACACGTCA
1 ATTTATGACACACATTTATGACGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATCA
**
5115660 -TAAATGAAGATGACACACATTTTTGTGTCATAA
66 TTAAAAAAAGATGACACACATTTTTGTGTCATAA
** ** *
5115693 ATTTATGACACACATTTATGACTTACATTTACGACTTACATTGCGTGTCATTGAAGCACACATCA
1 ATTTATGACACACATTTATGACGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATCA
5115758 TTAAAAAAAGATGACACACATT
66 TTAAAAAAAGATGACACACATT
5115780 CGTGTGTCGT
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
98 56 0.75
99 19 0.25
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (99 bp):
ATTTATGACACACATTTATGACGCACATTTACGACGCACATTGCGCGTCATTGAAGCACACATCA
TTAAAAAAAGATGACACACATTTTTGTGTCATAA
Found at i:5115720 original size:13 final size:13
Alignment explanation
Indices: 5115693--5115734 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
5115683 TGTGTCATAA
**
5115693 ATTTATGACACAC
1 ATTTATGACTTAC
5115706 ATTTATGACTTAC
1 ATTTATGACTTAC
*
5115719 ATTTACGACTTAC
1 ATTTATGACTTAC
5115732 ATT
1 ATT
5115735 GCGTGTCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (13 bp):
ATTTATGACTTAC
Found at i:5116867 original size:12 final size:12
Alignment explanation
Indices: 5116850--5116880 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
5116840 ATATATTGAT
5116850 AATCAAATGAAA
1 AATCAAATGAAA
5116862 AATCAAATGAAA
1 AATCAAATGAAA
*
5116874 AAACAAA
1 AATCAAA
5116881 CTCGGGATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.10, G:0.06, T:0.13
Consensus pattern (12 bp):
AATCAAATGAAA
Found at i:5119359 original size:2 final size:2
Alignment explanation
Indices: 5119352--5119394 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
5119342 GTATGCTCGA
5119352 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5119394 A
1 A
5119395 CACACACACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:5120111 original size:3 final size:3
Alignment explanation
Indices: 5120103--5120141 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
5120093 TCGCAATAGA
* * *
5120103 AAG AAG AAG AAG AAG AAG AAA AAG AGG AAG AAG AGG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
5120142 GAATTACATG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:5121926 original size:37 final size:37
Alignment explanation
Indices: 5121850--5121927 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
5121840 ATTTATTAAA
* ****
5121850 TTTTGTCACAATTACTGATATTTTTTGTGACTGTGTTT
1 TTTTGACACAATTACT-ATATTTTTTGTGACAACATTT
5121888 TTTTGACACAATTACT-TATTGTTTTGTGACAACATTT
1 TTTTGACACAATTACTATATT-TTTTGTGACAACATTT
5121925 TTT
1 TTT
5121928 AGCACAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 4 0.12
37 15 0.44
38 15 0.44
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.54
Consensus pattern (37 bp):
TTTTGACACAATTACTATATTTTTTGTGACAACATTT
Found at i:5124237 original size:162 final size:163
Alignment explanation
Indices: 5123969--5124293 Score: 616
Period size: 162 Copynumber: 2.0 Consensus size: 163
5123959 TGTATTTTGT
*
5123969 CCAAATCAATGCTAAAGCCAGTGTTGGGAACCTCTAACATTTTTTTTATAAAACTTTGAATGTTT
1 CCAAATCAATGCTAAAGCCAATGTTGGGAACCTCTAACATTTTTTTTATAAAACTTTGAATGTTT
*
5124034 GCTACAATACCTATTAATGTTGTGAGATTTGCAAGGTTAAACAATTTTTAATGTCTCTAAGTATT
66 GCTACAATACCTACTAATGTTGTGAGATTTGCAAGGTTAAACAATTTTTAATGTCTCTAAGTATT
5124099 GAAAGCATACACCCATTGTGTTAAAGTTTTCCA
131 GAAAGCATACACCCATTGTGTTAAAGTTTTCCA
*
5124132 CCAAATCAATGCTAAAGCCAATGTTGGGAACCTCTAAGA-TTTTTTTATAAAACTTTGAATGTTT
1 CCAAATCAATGCTAAAGCCAATGTTGGGAACCTCTAACATTTTTTTTATAAAACTTTGAATGTTT
5124196 GCTACAATACCTACTAATGTTGTGAGATTTGCAAGGTTAAACAATTTTTAATGTCTCTAAGTATT
66 GCTACAATACCTACTAATGTTGTGAGATTTGCAAGGTTAAACAATTTTTAATGTCTCTAAGTATT
5124261 GAAAGCATACACCCATTGTGTTAAAGTTTTCCA
131 GAAAGCATACACCCATTGTGTTAAAGTTTTCCA
5124294 TAAAATCCTA
Statistics
Matches: 159, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
162 122 0.77
163 37 0.23
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (163 bp):
CCAAATCAATGCTAAAGCCAATGTTGGGAACCTCTAACATTTTTTTTATAAAACTTTGAATGTTT
GCTACAATACCTACTAATGTTGTGAGATTTGCAAGGTTAAACAATTTTTAATGTCTCTAAGTATT
GAAAGCATACACCCATTGTGTTAAAGTTTTCCA
Found at i:5138208 original size:6 final size:6
Alignment explanation
Indices: 5138183--5138241 Score: 77
Period size: 6 Copynumber: 9.8 Consensus size: 6
5138173 TCTCTCCTTT
*
5138183 ATTTTC -TTTTC AATTTTTC ATTTTC ATTTTC ATTTTT ATTTTC ATTTTC
1 ATTTTC ATTTTC -A-TTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
5138232 ATTTT- ATTTT
1 ATTTTC ATTTT
5138242 AAGTTTTATT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
5 10 0.21
6 32 0.67
7 1 0.02
8 5 0.10
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTTC
Found at i:5138223 original size:18 final size:18
Alignment explanation
Indices: 5138180--5138255 Score: 95
Period size: 18 Copynumber: 4.2 Consensus size: 18
5138170 AGTTCTCTCC
5138180 TTTATTTTC-TTTTCAATT
1 TTTATTTTCATTTTC-ATT
5138198 TTTCATTTTCATTTTCATT
1 TTT-ATTTTCATTTTCATT
5138217 TTTATTTTCATTTTCA-T
1 TTTATTTTCATTTTCATT
*
5138234 TTTATTTTAAGTTTT-ATT
1 TTTATTTTCA-TTTTCATT
5138252 TTTA
1 TTTA
5138256 AACATACTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
17 11 0.21
18 25 0.47
19 12 0.23
20 5 0.09
ACGTcount: A:0.18, C:0.09, G:0.01, T:0.71
Consensus pattern (18 bp):
TTTATTTTCATTTTCATT
Found at i:5138254 original size:6 final size:6
Alignment explanation
Indices: 5138195--5138255 Score: 52
Period size: 6 Copynumber: 10.2 Consensus size: 6
5138185 TTTCTTTTCA
* * * * *
5138195 ATTTTT CATTTTC ATTTTC ATTTTT ATTTTC ATTTTC A-TTTT ATTTTA
1 ATTTTT -ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
*
5138243 AGTTTT ATTTTT A
1 ATTTTT ATTTTT A
5138256 AACATACTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
5 4 0.09
6 36 0.80
7 5 0.11
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (6 bp):
ATTTTT
Found at i:5152800 original size:72 final size:72
Alignment explanation
Indices: 5152699--5152887 Score: 211
Period size: 72 Copynumber: 2.6 Consensus size: 72
5152689 TGACCGATGT
* * * *
5152699 TGAACCTATATAAGGAATTACCATATTGATTAGAATTTAACCTACAATAAGGAATTACCAGCTGA
1 TGAACCTATATAAGGAATTACCATATTGATCAAAAATGAACCTACAATAAGGAATTACCAGCTGA
5152764 TCGGTGC
66 TCGGTGC
* * * ** *
5152771 TGAAACTATATAAGGAATTACCATCTTGATCAAAAATGAACTTGTAATAAGGAATTACCAGTTGA
1 TGAACCTATATAAGGAATTACCATATTGATCAAAAATGAACCTACAATAAGGAATTACCAGCTGA
*
5152836 TTGGTGC
66 TCGGTGC
* ** * *
5152843 TTAACCTATATAAAAAATTACCA-ACTTAATC-AAAATAAACCTACA
1 TGAACCTATATAAGGAATTACCATA-TTGATCAAAAATGAACCTACA
5152888 GAGACTTCAT
Statistics
Matches: 95, Mismatches: 21, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
71 10 0.11
72 85 0.89
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (72 bp):
TGAACCTATATAAGGAATTACCATATTGATCAAAAATGAACCTACAATAAGGAATTACCAGCTGA
TCGGTGC
Found at i:5172948 original size:30 final size:30
Alignment explanation
Indices: 5172851--5172949 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
5172841 AGTACTTACT
* *
5172851 TAAAATTATAAGGACCAAAATAGCAAAAACA
1 TAAATTTA-AAGGACCAAAATAGCGAAAACA
* * * * *
5172882 TAAACTCAAAGGACTAAAATAGTGCAAACA
1 TAAATTTAAAGGACCAAAATAGCGAAAACA
* *
5172912 -AGAATTTAAAGGTCCAAAATAGCGAAAATA
1 TA-AATTTAAAGGACCAAAATAGCGAAAACA
5172942 TAAATTTA
1 TAAATTTA
5172950 TAAGACTAAG
Statistics
Matches: 53, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
29 1 0.02
30 45 0.85
31 7 0.13
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.20
Consensus pattern (30 bp):
TAAATTTAAAGGACCAAAATAGCGAAAACA
Found at i:5174854 original size:134 final size:135
Alignment explanation
Indices: 5174622--5174940 Score: 428
Period size: 134 Copynumber: 2.4 Consensus size: 135
5174612 GTTTGGGTCG
* * *
5174622 TCTAAGGGTG-CACAGCTCCTACGTGATGAGGAGATCTAGTTAGGGATGACACTGCTCATACTAT
1 TCTAAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTCAGGGATGACACGGCTCATACTAT
* * * *
5174686 GATGAAGAGTTCTTGGTCATCTTTAAGAAGGGTGATAACTTGGTTCTTACATGATGAGGACGGCT
66 GATGAAGAGTTCTTGGACATCTTTAAGAAGGGTGATAACTCGATTCCTACATGATGAGGACGGCT
*
5174751 GGTTA
131 GATTA
*** * *
5174756 TCTAAGGGTGACGTGGCTCCTACGTGATGAGGAGATTTGGTCAGGGGATGACACGGCTCATAC-G
1 TCTAAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTCA-GGGATGACACGGCTCATACTA
* * **
5174820 TGATGAAGAGTTC-TGGACATCTTTAGGAATGGTGATAACTCGATTCCTATGTGATGAGGACGGC
65 TGATGAAGAGTTCTTGGACATCTTTAAGAAGGGTGATAACTCGATTCCTACATGATGAGGACGGC
5174884 TGATTA
130 TGATTA
* *
5174890 TTTGAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTCAAGGGATGA
1 TCTAAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTC-AGGGATGA
5174941 AGAGTTCTTG
Statistics
Matches: 159, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
134 101 0.64
135 40 0.25
136 18 0.11
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (135 bp):
TCTAAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTCAGGGATGACACGGCTCATACTAT
GATGAAGAGTTCTTGGACATCTTTAAGAAGGGTGATAACTCGATTCCTACATGATGAGGACGGCT
GATTA
Found at i:5175056 original size:116 final size:115
Alignment explanation
Indices: 5174821--5175047 Score: 296
Period size: 116 Copynumber: 2.0 Consensus size: 115
5174811 GCTCATACGT
* * * *
5174821 GATGAAGAGTTCTGGACATCTTTAGGAATGGTGATAACTCGATTCCTATGTGATGAGGACGGCTG
1 GATGAAGAGTTCTGCACATCTTTAAGAAGGGTGATAACTCGATTCCTATGTGATGAGGAAGGCTG
* * * *
5174886 ATTATTTGAGGGTGACACAGCTCCTACGTGATGAGGAGATCTGGTCAAGG
66 ATTATCTGAGGGTGACACAGCTCCCACGTAATGAGGAGATCTAGTCAAGG
* * *
5174936 GATGAAGAGTTCTTGCTCATCTTTAAGAAGGGTGATAAGTCGGTTCCTATGTGATGAGGAAGGCT
1 GATGAAGAGTTC-TGCACATCTTTAAGAAGGGTGATAACTCGATTCCTATGTGATGAGGAAGGCT
* *
5175001 -AGTTATCTGAGGGTGACA-AGGCTCCCATGTAATGAGGAGGTCTAGTC
65 GA-TTATCTGAGGGTGACACA-GCTCCCACGTAATGAGGAGATCTAGTC
5175048 TGTGGATGAC
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
115 14 0.15
116 82 0.85
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (115 bp):
GATGAAGAGTTCTGCACATCTTTAAGAAGGGTGATAACTCGATTCCTATGTGATGAGGAAGGCTG
ATTATCTGAGGGTGACACAGCTCCCACGTAATGAGGAGATCTAGTCAAGG
Found at i:5175424 original size:43 final size:40
Alignment explanation
Indices: 5175377--5175472 Score: 124
Period size: 40 Copynumber: 2.3 Consensus size: 40
5175367 ATAACACGGT
5175377 TCCTACGTGATGAGGATGG-CTGGTTATCTA-GGGATGACACGAC
1 TCCTACGTGATGAGGA-GGTCTGG---TC-AGGGGATGACACGAC
5175420 TCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGAC
1 TCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGAC
*
5175460 TCATACGTGATGA
1 TCCTACGTGATGA
5175473 AGAGTTATGG
Statistics
Matches: 50, Mismatches: 1, Indels: 7
0.86 0.02 0.12
Matches are distributed among these distances:
39 1 0.02
40 27 0.54
42 2 0.04
43 20 0.40
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (40 bp):
TCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGAC
Found at i:5175430 original size:134 final size:134
Alignment explanation
Indices: 5174936--5175756 Score: 896
Period size: 134 Copynumber: 6.2 Consensus size: 134
5174926 CTGGTCAAGG
* * * * ** ** *
5174936 GATGAAGAGTTCTTGCTCATCTTTAAGAAGGGTGATAAGTCGGTTCCTATGTGATGAGGAAGGCT
1 GATGAAGAGTTATGGC-CATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCT
* * * * * * * * * *
5175001 AGTTATCT-GAGGGTGACAAGGCTCCCATGTAATGAGGAGGTCTAGTCTGTGGATGACACTGCTC
65 GGTTATCTAG-GGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGAGGATGACACGGCTC
5175065 ATA--T
129 ATACGT
* * * * * * * * * *
5175069 G-CGATGAGTCT-TGGTCATCTTTAGCAGGGGTGATAACACGGTTTCTAAATAATGAGGACGGTT
1 GATGAAGAGT-TATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCT
* *
5175132 GGTTATC-AGGGGTGACATGACTCCTACGTGATGAGGAGGTCTGGTC-GAGGGATGACACTGCTC
65 GGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGA-GGATGACACGGCTC
5175195 ATACGT
129 ATACGT
* * * *
5175201 GATGAAGAGTTCTAGCCATCTTTAGG-AGGGTGATAACACGGTTCCTACACGATGAGGACGGCTG
1 GATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCTG
* * * *
5175265 GTTATCTAGGGGTGACAC-AGCTCCTATGTGATAAGAAGGTCTGGTCAGAGGATGACATGGCTCA
66 GTTATCTAGGGGTGACACGA-CTCCTACGTGATGAGGAGGTCTGGTCAGAGGATGACACGGCTCA
5175329 TACGT
130 TACGT
* *
5175334 GATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACGTGATGAGGATGGCTG
1 GATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCTG
* * *
5175399 GTTATCTAGGGATGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGACTCAT
66 GTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGAGGATGACACGGCTCAT
5175464 ACGT
131 ACGT
* *** ** *
5175468 GATGAAGAGTTATGGCCATCTTTAAGAAATACGATAACACGGTTCCTATGTGATGAGGACGACTG
1 GATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCTG
* * * *
5175533 GTTATCTAGGGGTGACATGGCTCCTACGTGATGA-GA--TCTAGTTAG-GTGATGACACGGCTCA
66 GTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGAG-GATGACACGGCTCA
5175594 TACGT
130 TACGT
* * * *
5175599 GAATTAA-AGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATTATGAGGATGGCT
1 G-ATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCT
* * * *
5175663 GGTTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGGTTTGGTCTGGGGATGACACGGCTCA
65 GGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGAGGATGACACGGCTCA
5175728 TACGT
130 TACGT
* *
5175733 GATGAAGAGTTCTGGTCATCTTTA
1 GATGAAGAGTTATGGCCATCTTTA
5175757 AGGATAATGG
Statistics
Matches: 584, Mismatches: 85, Indels: 37
0.83 0.12 0.05
Matches are distributed among these distances:
129 1 0.00
130 49 0.08
131 151 0.26
132 56 0.10
133 100 0.17
134 225 0.39
135 2 0.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (134 bp):
GATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACATGATGAGGACGGCTG
GTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGAGGATGACACGGCTCAT
ACGT
Found at i:5175661 original size:265 final size:264
Alignment explanation
Indices: 5174936--5175758 Score: 923
Period size: 265 Copynumber: 3.1 Consensus size: 264
5174926 CTGGTCAAGG
* ** ** *** * *
5174936 GATGAAGAGTTCTTGCTCATCTTTAAGAAGGGTGATAAGTCGGTTCCTATGTGATGAGGAAGGCT
1 GATGAAGAGTTCTGGC-CATCTTTAAG-AGAATGATAACACGGTTCCTACACGATGAGGACGACT
* * * * * * * * *
5175001 AGTTATCT-GAGGGTGACA-AGGCTCCCATGTAATGAGGAGGTCTAGTCTGTGGATGACACTGCT
64 GGTTATCTAG-GGGTGACACA-GCTCCTACGTGAT-AGAAGATCTAGTCAGAGGATGACACGGCT
* * * * * * *
5175064 CATA--TG-CGATGAGTCT-TGGTCATCTTTAGCAGGGGTGATAACACGGTTTCTAAATAATGAG
126 CATACGTGATGAAGAGT-TATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATAATGAG
* * *
5175125 GACGGTTGGTTATC-AGGGGTGACATGACTCCTACGTGATGAGGAGGTCTGGTCGAGGGATGACA
190 GATGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCG-GGGATGACA
5175189 CTGCTCATACGT
254 C-GCTCATACGT
* * ** *
5175201 GATGAAGAGTTCTAGCCATCTTTAGGAGGGTGATAACACGGTTCCTACACGATGAGGACGGCTGG
1 GATGAAGAGTTCTGGCCATCTTTAAGAGAATGATAACACGGTTCCTACACGATGAGGACGACTGG
* * * *
5175266 TTATCTAGGGGTGACACAGCTCCTATGTGATAAGAAGGTCTGGTCAGAGGATGACATGGCTCATA
66 TTATCTAGGGGTGACACAGCTCCTACGTGAT-AGAAGATCTAGTCAGAGGATGACACGGCTCATA
* * *
5175331 CGTGATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTCCTACGTGATGAGGATGG
130 CGTGATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATAATGAGGATGG
*
5175396 CTGGTTATCTAGGGATGACACGACTCCTACGTGATGAGGAGGTCTGGTCAGGGGATGACACGACT
195 CTGGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTC-GGGGATGACACG-CT
5175461 CATACGT
258 CATACGT
* ***
5175468 GATGAAGAGTTATGGCCATCTTTAAGA-AATACGATAACACGGTTCCTATGTGATGAGGACGACT
1 GATGAAGAGTTCTGGCCATCTTTAAGAGAAT--GATAACACGGTTCCTACACGATGAGGACGACT
** *
5175532 GGTTATCTAGGGGTGACATGGCTCCTACGTGAT-G-AGATCTAGTTAG-GTGATGACACGGCTCA
64 GGTTATCTAGGGGTGACACAGCTCCTACGTGATAGAAGATCTAGTCAGAG-GATGACACGGCTCA
* *
5175594 TACGTGAATTAA-AGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATTATGAGGA
128 TACGTG-ATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATAATGAGGA
* *
5175658 TGGCTGGTTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGGTTTGGTCTGGGGATGACACG
192 TGGCTGGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTC-GGGGATGACAC-
5175723 GCTCATACGT
255 GCTCATACGT
*
5175733 GATGAAGAGTTCTGGTCATCTTTAAG
1 GATGAAGAGTTCTGGCCATCTTTAAG
5175759 GATAATGGTT
Statistics
Matches: 486, Mismatches: 58, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
263 84 0.17
264 12 0.02
265 188 0.39
266 63 0.13
267 80 0.16
268 59 0.12
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (264 bp):
GATGAAGAGTTCTGGCCATCTTTAAGAGAATGATAACACGGTTCCTACACGATGAGGACGACTGG
TTATCTAGGGGTGACACAGCTCCTACGTGATAGAAGATCTAGTCAGAGGATGACACGGCTCATAC
GTGATGAAGAGTTATGGCCATCTTTAGGAAGGGCGATAACACGGTTTCTACATAATGAGGATGGC
TGGTTATCTAGGGGTGACACGACTCCTACGTGATGAGGAGGTCTGGTCGGGGATGACACGCTCAT
ACGT
Found at i:5175749 original size:40 final size:39
Alignment explanation
Indices: 5175672--5175749 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
5175662 TGGTTATCTA
* *
5175672 GGGGTGACACGGCTCCTACGTGATGAGGAGGTTTGGTCT
1 GGGGTGACACGGCTCATACGTGATGAAGAGGTTTGGTCT
5175711 GGGGATGACACGGCTCATACGTGATGAAGA-GTTCTGGTC
1 GGGG-TGACACGGCTCATACGTGATGAAGAGGTT-TGGTC
5175750 ATCTTTAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
39 7 0.20
40 28 0.80
ACGTcount: A:0.19, C:0.18, G:0.38, T:0.24
Consensus pattern (39 bp):
GGGGTGACACGGCTCATACGTGATGAAGAGGTTTGGTCT
Found at i:5178364 original size:2 final size:2
Alignment explanation
Indices: 5178357--5178391 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
5178347 AGCTTTATTG
5178357 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5178392 TGTTGGGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5182183 original size:30 final size:30
Alignment explanation
Indices: 5182099--5182184 Score: 100
Period size: 30 Copynumber: 2.9 Consensus size: 30
5182089 AATTATAAGA
* *
5182099 ACCAAAATAGCAAAAACATAAACTCAAAGG
1 ACCAAAATAGCAAAAACATAAATTTAAAGG
* * * **
5182129 ACTAAAATAGTACAAACAGGAATTTAAAGG
1 ACCAAAATAGCAAAAACATAAATTTAAAGG
*
5182159 TCCAAAATAGCAAAAACATAAATTTA
1 ACCAAAATAGCAAAAACATAAATTTA
5182185 TAAGACTAAG
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.17
Consensus pattern (30 bp):
ACCAAAATAGCAAAAACATAAATTTAAAGG
Found at i:5183527 original size:126 final size:126
Alignment explanation
Indices: 5183302--5183553 Score: 504
Period size: 126 Copynumber: 2.0 Consensus size: 126
5183292 TGCTGACTAA
5183302 TGTGGATAGGACGGCTCAACGGTGACGGTGGCGAGAGGGGAAGCTCGGTTGTCGGCTCACGCACC
1 TGTGGATAGGACGGCTCAACGGTGACGGTGGCGAGAGGGGAAGCTCGGTTGTCGGCTCACGCACC
5183367 GGTGGGAACAAACACTGAAGTCCACGTGTGCCAATGGAAGCTGGAAGGCTAGCAACGGCGG
66 GGTGGGAACAAACACTGAAGTCCACGTGTGCCAATGGAAGCTGGAAGGCTAGCAACGGCGG
5183428 TGTGGATAGGACGGCTCAACGGTGACGGTGGCGAGAGGGGAAGCTCGGTTGTCGGCTCACGCACC
1 TGTGGATAGGACGGCTCAACGGTGACGGTGGCGAGAGGGGAAGCTCGGTTGTCGGCTCACGCACC
5183493 GGTGGGAACAAACACTGAAGTCCACGTGTGCCAATGGAAGCTGGAAGGCTAGCAACGGCGG
66 GGTGGGAACAAACACTGAAGTCCACGTGTGCCAATGGAAGCTGGAAGGCTAGCAACGGCGG
5183554 CTAGAGCTTC
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 126 1.00
ACGTcount: A:0.24, C:0.22, G:0.39, T:0.15
Consensus pattern (126 bp):
TGTGGATAGGACGGCTCAACGGTGACGGTGGCGAGAGGGGAAGCTCGGTTGTCGGCTCACGCACC
GGTGGGAACAAACACTGAAGTCCACGTGTGCCAATGGAAGCTGGAAGGCTAGCAACGGCGG
Found at i:5183745 original size:3 final size:3
Alignment explanation
Indices: 5183737--5183802 Score: 80
Period size: 3 Copynumber: 22.0 Consensus size: 3
5183727 TGTTTAATTT
* * *
5183737 ATA ATA ATA ATT ATT ATT ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
5183784 ATA ATA ATA TTTA ATA ATA
1 ATA ATA ATA -ATA ATA ATA
5183803 TTTTTTGACC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.04
3 53 0.93
4 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
ATA
Found at i:5183780 original size:17 final size:17
Alignment explanation
Indices: 5183758--5183802 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
5183748 TATTATTATA
5183758 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
5183775 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
*
5183792 AT-TTAATAATA
1 ATAATAATAATA
5183803 TTTTTTGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:5186637 original size:21 final size:21
Alignment explanation
Indices: 5186613--5186674 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
5186603 TGACTTTTCA
5186613 CATGAATCGCATTACTGCATT
1 CATGAATCGCATTACTGCATT
* * *
5186634 CATG-A--GGATT--T-TATG
1 CATGAATCGCATTACTGCATT
5186649 CATGAATCGCATTACTGCATT
1 CATGAATCGCATTACTGCATT
5186670 CATGA
1 CATGA
5186675 GGATTTTATG
Statistics
Matches: 29, Mismatches: 6, Indels: 12
0.62 0.13 0.26
Matches are distributed among these distances:
15 6 0.21
16 2 0.07
18 8 0.28
20 2 0.07
21 11 0.38
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (21 bp):
CATGAATCGCATTACTGCATT
Found at i:5186660 original size:36 final size:36
Alignment explanation
Indices: 5186613--5186744 Score: 230
Period size: 36 Copynumber: 3.7 Consensus size: 36
5186603 TGACTTTTCA
5186613 CATGAATCGCATTACTGCATTCATGAGGATTTTATG
1 CATGAATCGCATTACTGCATTCATGAGGATTTTATG
5186649 CATGAATCGCATTACTGCATTCATGAGGATTTTATG
1 CATGAATCGCATTACTGCATTCATGAGGATTTTATG
*
5186685 CATGAATCGTATTACTGCATTCATGAGGATTTTATG
1 CATGAATCGCATTACTGCATTCATGAGGATTTTATG
*
5186721 CATGAATCTCATTA-TCGCATTCAT
1 CATGAATCGCATTACT-GCATTCAT
5186745 CCATACTTTT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
35 1 0.01
36 91 0.99
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (36 bp):
CATGAATCGCATTACTGCATTCATGAGGATTTTATG
Found at i:5186792 original size:93 final size:93
Alignment explanation
Indices: 5186684--5187022 Score: 367
Period size: 93 Copynumber: 3.7 Consensus size: 93
5186674 AGGATTTTAT
** ** * *
5186684 GCATGAATCGTATTACTGCATTCATGAGGATTTTATGCATGAATCTCATTATCGCATTCATCCAT
1 GCATGAATCACATTACCACATTCATGAGGATTTTATGCATAAATCTCATTACCGCATTCATCCAT
* * * * *
5186749 ACTTTTTCACTTTTATTAAGGATTTTTT
66 ACTTTTTCACCTCTATTGAGGACTTTTC
* * * **
5186777 GGATGAATCACATTACCACATTCATGAAGATTTTATGCATAAATCGCATTACCATATTCATCCAT
1 GCATGAATCACATTACCACATTCATGAGGATTTTATGCATAAATCTCATTACCGCATTCATCCAT
*
5186842 GCTTTTTCACCTCTATTGAGGACTTTTC
66 ACTTTTTCACCTCTATTGAGGACTTTTC
* * * * * * *
5186870 GCACGAATTACATTCCCACATTCATGAGAATTTTATGCATAAATCACATTATCGCATTCATCAAT
1 GCATGAATCACATTACCACATTCATGAGGATTTTATGCATAAATCTCATTACCGCATTCATCCAT
*
5186935 ACTTTTTCACCTCCATTGAGGACTTTTC
66 ACTTTTTCACCTCTATTGAGGACTTTTC
* ** * * * *
5186963 ACATGAATGGCATTACCGCA-TCTTGAGGATTTTATGCATGAAT-TGCATTACCTCATTCAT
1 GCATGAATCACATTACCACATTCATGAGGATTTTATGCATAAATCT-CATTACCGCATTCAT
5187023 GAGGATTTTA
Statistics
Matches: 203, Mismatches: 42, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
92 33 0.16
93 170 0.84
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (93 bp):
GCATGAATCACATTACCACATTCATGAGGATTTTATGCATAAATCTCATTACCGCATTCATCCAT
ACTTTTTCACCTCTATTGAGGACTTTTC
Found at i:5187003 original size:35 final size:36
Alignment explanation
Indices: 5186964--5187041 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
5186954 GGACTTTTCA
*
5186964 CATGAATGGCATTACCGCA-TCTTGAGGATTTTATG
1 CATGAATGGCATTACCGCATTCATGAGGATTTTATG
* *
5186999 CATGAATTGCATTACCTCATTCATGAGGATTTTATG
1 CATGAATGGCATTACCGCATTCATGAGGATTTTATG
5187035 CATGAAT
1 CATGAAT
5187042 CACATTATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 17 0.44
36 22 0.56
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (36 bp):
CATGAATGGCATTACCGCATTCATGAGGATTTTATG
Found at i:5187025 original size:128 final size:128
Alignment explanation
Indices: 5186857--5187254 Score: 462
Period size: 128 Copynumber: 3.1 Consensus size: 128
5186847 TTCACCTCTA
* * * * *
5186857 TTGAGGACTTTTCGCACGAATTACATTCCCACATTCATGAGAATTTTATGCATAAATCACATTAT
1 TTGAGGA-TTTTAGCATGAATTGCATTACCACATTCATGAGGATTTTATGCATAAATCACATTAT
* * * * *
5186922 CGCATTCATCAATACTTTTTCACCTCCATTGAGGACTTTTCACATGAATGGCATTACCGCA-TC
65 CGTATTCATCAATACTTTTTCACCTCTATTGAGGACTTTTCGCATGAATCGCATTACCACATTC
* *
5186985 TTGAGGATTTTATGCATGAATTGCATTACCTCATTCATGAGGATTTTATGCATGAATCACATTAT
1 TTGAGGATTTTA-GCATGAATTGCATTACCACATTCATGAGGATTTTATGCATAAATCACATTAT
** * * * *
5187050 CGTATTCATCCTTACTTTTTCACCTCTATTTAGGACTTTTTGCATTAATCACATTACCACATTC
65 CGTATTCATCAATACTTTTTCACCTCTATTGAGGACTTTTCGCATGAATCGCATTACCACATTC
* * * * *
5187114 ATGAGGAATTTTCA-CATGAATCGCATTACCGCATTCATGAGGTTTTTATGCATAAATCGCATTA
1 TTGAGG-ATTTT-AGCATGAATTGCATTACCACATTCATGAGGATTTTATGCATAAATCACATTA
* * * *
5187178 TTGTATTCATCTATACTTTTTCATCTCTATTGAGGA-TTTCTCGCATGAATCGCATTACCATATT
64 TCGTATTCATCAATACTTTTTCACCTCTATTGAGGACTTT-TCGCATGAATCGCATTACCACATT
5187242 -
128 C
*
5187242 TATGATGATTTTA
1 T-TGAGGATTTTA
5187255 TTTATGAATC
Statistics
Matches: 229, Mismatches: 35, Indels: 13
0.83 0.13 0.05
Matches are distributed among these distances:
127 5 0.02
128 111 0.48
129 107 0.47
130 5 0.02
131 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (128 bp):
TTGAGGATTTTAGCATGAATTGCATTACCACATTCATGAGGATTTTATGCATAAATCACATTATC
GTATTCATCAATACTTTTTCACCTCTATTGAGGACTTTTCGCATGAATCGCATTACCACATTC
Found at i:5187172 original size:36 final size:37
Alignment explanation
Indices: 5187081--5187177 Score: 103
Period size: 36 Copynumber: 2.7 Consensus size: 37
5187071 ACCTCTATTT
* * *
5187081 AGGACTTTT-TGCATTAATCACATTACCACATTCATG
1 AGGATTTTTATGCATAAATCGCATTACCACATTCATG
* * *
5187117 AGGAATTTTCA--CATGAATCGCATTACCGCATTCATG
1 AGG-ATTTTTATGCATAAATCGCATTACCACATTCATG
5187153 AGG-TTTTTATGCATAAATCGCATTA
1 AGGATTTTTATGCATAAATCGCATTA
5187178 TTGTATTCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
34 5 0.10
36 41 0.82
37 4 0.08
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (37 bp):
AGGATTTTTATGCATAAATCGCATTACCACATTCATG
Found at i:5187262 original size:129 final size:128
Alignment explanation
Indices: 5186888--5187269 Score: 466
Period size: 129 Copynumber: 3.0 Consensus size: 128
5186878 TACATTCCCA
* * * *
5186888 CATTCATGAGAATTTTATGCATAAATCACATTATCGCATTCATCAATACTTTTTCACCTCCATTG
1 CATTCATGAGGATTTTATGCATAAATCACATTATCGTATTCATCTATACTTTTTCACCTCTATTG
* * * * * *
5186953 AGGACTTTTCACATGAATGGCATTACCGCATCT-TGAGGATTTTATGCATGAATTGCATTACCT
66 AGGACTTTTCGCATGAATCGCATTACCACATTTATGAGGATTTTAT-CATGAATCGCATTACCG
*
5187016 CATTCATGAGGATTTTATGCATGAATCACATTATCGTATTCATCCT-TACTTTTTCACCTCTATT
1 CATTCATGAGGATTTTATGCATAAATCACATTATCGTATTCAT-CTATACTTTTTCACCTCTATT
* * * * *
5187080 TAGGACTTTTTGCATTAATCACATTACCACATTCATGAGGAATTTTCA-CATGAATCGCATTACC
65 GAGGACTTTTCGCATGAATCGCATTACCACATTTATGAGG-ATTTT-ATCATGAATCGCATTACC
5187144 G
128 G
* * * *
5187145 CATTCATGAGGTTTTTATGCATAAATCGCATTATTGTATTCATCTATACTTTTTCATCTCTATTG
1 CATTCATGAGGATTTTATGCATAAATCACATTATCGTATTCATCTATACTTTTTCACCTCTATTG
* * * *
5187210 AGGA-TTTCTCGCATGAATCGCATTACCATATTTATGATGATTTTATTTATGAATCACATT
66 AGGACTTT-TCGCATGAATCGCATTACCACATTTATGAGGATTTTA-TCATGAATCGCATT
5187270 GTTGGTAATG
Statistics
Matches: 216, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
127 1 0.00
128 92 0.43
129 117 0.54
130 5 0.02
131 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (128 bp):
CATTCATGAGGATTTTATGCATAAATCACATTATCGTATTCATCTATACTTTTTCACCTCTATTG
AGGACTTTTCGCATGAATCGCATTACCACATTTATGAGGATTTTATCATGAATCGCATTACCG
Found at i:5187688 original size:31 final size:31
Alignment explanation
Indices: 5187647--5187724 Score: 147
Period size: 31 Copynumber: 2.5 Consensus size: 31
5187637 AGACAAGTTG
*
5187647 TTAATATCAGGAGTTACAGAAGTTACATGAT
1 TTAATTTCAGGAGTTACAGAAGTTACATGAT
5187678 TTAATTTCAGGAGTTACAGAAGTTACATGAT
1 TTAATTTCAGGAGTTACAGAAGTTACATGAT
5187709 TTAATTTCAGGAGTTA
1 TTAATTTCAGGAGTTA
5187725 TAGCTATTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (31 bp):
TTAATTTCAGGAGTTACAGAAGTTACATGAT
Found at i:5194079 original size:36 final size:36
Alignment explanation
Indices: 5194032--5194107 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
5194022 TTTTCACCTA
*
5194032 TCATGATGACTTTTTGT-ATGAATCACATTATCGCAT
1 TCATGAGGACTTTTT-TCATGAATCACATTATCGCAT
*
5194068 TCATGAGGACTTTTTTCATGAATCGCATTATCGCAT
1 TCATGAGGACTTTTTTCATGAATCACATTATCGCAT
5194104 TCAT
1 TCAT
5194108 AAAAGCATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 36 0.97
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.41
Consensus pattern (36 bp):
TCATGAGGACTTTTTTCATGAATCACATTATCGCAT
Found at i:5194122 original size:36 final size:36
Alignment explanation
Indices: 5194049--5194122 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
5194039 GACTTTTTGT
* * * *
5194049 ATGAATCACATTATCGCATTCATGAGGACTTTTTTC
1 ATGAATCACATTATCGCATTCATAAAGACATTATTC
*
5194085 ATGAATCGCATTATCGCATTCATAAA-AGCATTATTC
1 ATGAATCACATTATCGCATTCATAAAGA-CATTATTC
5194121 AT
1 AT
5194123 ATAAGTACCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 1 0.03
36 31 0.97
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (36 bp):
ATGAATCACATTATCGCATTCATAAAGACATTATTC
Found at i:5194900 original size:139 final size:138
Alignment explanation
Indices: 5194491--5194933 Score: 382
Period size: 139 Copynumber: 3.2 Consensus size: 138
5194481 GAGGAGATCC
* * * *
5194491 CATTTTCTT-TGAATCTGACCAACCCTGAAGAGTAGCAAAGTAGATTCTATTTTTTTTCTTTAGA
1 CATTTT-TTCTGAATCTGACCTACCCTGAAAAGTAGCAGA-TAGATTCTAATTTTTTTCTTTAGA
* * * * * *
5194555 TTTGAACTACCCTGAAGA-ACACTGGAGAAAATCTATCTTGATATAACCTA-CCTCGAAGAGCAG
64 TTTGACCTACCCTGAAGAGA-AGTGGAGCAAATCTATCTTGATCTGACGTACCCT-GAAGAGCAG
** * * *
5194618 TTGACCAATTCT
127 TAAAGCAAATCA
* * * * * *
5194630 CCTTTTCTCTGAATCTAACCTACCCT--AAAGTGCAGCGGAGCAGAATCT-A-TTTTTTCTTTAG
1 CATTTTTTCTGAATCTGACCTACCCTGAAAAGT--AGCAGA-TAGATTCTAATTTTTTTCTTTAG
* * * * * * *
5194691 ATTTAACCTACTCTAAAGAGAAGTGGAGCAAATATATCTTGATCTGA-GCTACCCTAAATAGTAG
63 ATTTGACCTACCCTGAAGAGAAGTGGAGCAAATCTATCTTGATCTGACG-TACCCTGAAGAGCAG
*
5194755 TGAAGCAAATCA
127 TAAAGCAAATCA
*
5194767 CATTTTTTCTGAATCTGACCTACCCTGAAAAGTAGCAGATAATATTCTAATTTTTTTCTTTAGAT
1 CATTTTTTCTGAATCTGACCTACCCTGAAAAGTAGCAGAT-AGATTCTAATTTTTTTCTTTAGAT
* * * * *
5194832 ATGACCAACCCTGAAGAGAAGTGGAGCAAATCTATCCTGATCTGACGTACCCTGGAGAGCAGCAA
65 TTGACCTACCCTGAAGAGAAGTGGAGCAAATCTATCTTGATCTGACGTACCCTGAAGAGCAGTAA
*
5194897 AGCAAATCC
130 AGCAAATCA
*
5194906 CATTTATTTTCCCG-ATCTGACCTACCCT
1 CA-TT-TTTT-CTGAATCTGACCTACCCT
5194934 AAAGAGCATC
Statistics
Matches: 239, Mismatches: 50, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
137 100 0.42
138 6 0.03
139 110 0.46
140 3 0.01
141 18 0.08
142 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (138 bp):
CATTTTTTCTGAATCTGACCTACCCTGAAAAGTAGCAGATAGATTCTAATTTTTTTCTTTAGATT
TGACCTACCCTGAAGAGAAGTGGAGCAAATCTATCTTGATCTGACGTACCCTGAAGAGCAGTAAA
GCAAATCA
Found at i:5197052 original size:136 final size:136
Alignment explanation
Indices: 5196808--5197145 Score: 559
Period size: 136 Copynumber: 2.5 Consensus size: 136
5196798 TGAGTAATTA
*
5196808 GATTTGGTCCTCGCATTAAATGCTCGAGGGTCCTTATCGCTTATTCGATTCAATAATTGGTAAAA
1 GATTTGGTCCTCGCATTAAATGCTCGAGGGTTCTTATCGCTTATTCGATTCAATAATTGGTAAAA
5196873 ATCAAATAAGTTTAACTTTAAAACCCTCACTTTAGGTTAAATTTCATTTTATTCTAATTTAGGAA
66 ATCAAATAAGTTTAACTTTAAAACCCTCACTTTAGGTTAAATTTCATTTTATTCTAATTTAGGAA
5196938 ATATTC
131 ATATTC
*
5196944 GATTTGGTCCTCGCATTAAATGCTCGAGGGTTCTTATCACTTATTCGATTCAATAATTGGTAAAA
1 GATTTGGTCCTCGCATTAAATGCTCGAGGGTTCTTATCGCTTATTCGATTCAATAATTGGTAAAA
* * * *
5197009 ATCAATTAGGTTTAACTTTAAAACCTTCACTTTAGGTTAAATTTCATTTTATTCTAATTTAGGCA
66 ATCAAATAAGTTTAACTTTAAAACCCTCACTTTAGGTTAAATTTCATTTTATTCTAATTTAGGAA
5197074 ATATTC
131 ATATTC
* * * * * * *
5197080 GATTTGGTTCTCGCATTAAATGCTCGAGGATTCTCATCGGTTATTTGATTCAATGATTGGTTAAA
1 GATTTGGTCCTCGCATTAAATGCTCGAGGGTTCTTATCGCTTATTCGATTCAATAATTGGTAAAA
5197145 A
66 A
5197146 CTGACTACAT
Statistics
Matches: 188, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 188 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (136 bp):
GATTTGGTCCTCGCATTAAATGCTCGAGGGTTCTTATCGCTTATTCGATTCAATAATTGGTAAAA
ATCAAATAAGTTTAACTTTAAAACCCTCACTTTAGGTTAAATTTCATTTTATTCTAATTTAGGAA
ATATTC
Found at i:5200993 original size:22 final size:22
Alignment explanation
Indices: 5200968--5201030 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
5200958 CGAGTAACAG
5200968 AAGTGCCTTAGCACTGATACTA
1 AAGTGCCTTAGCACTGATACTA
*
5200990 AAGTGCCTTAGCAATGATACTA
1 AAGTGCCTTAGCACTGATACTA
* *
5201012 AAGTGCCTCAACACTGATA
1 AAGTGCCTTAGCACTGATA
5201031 GTATAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (22 bp):
AAGTGCCTTAGCACTGATACTA
Found at i:5208730 original size:20 final size:20
Alignment explanation
Indices: 5208681--5208730 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
5208671 GTTTTTAAAT
*
5208681 TGTTGGTTTTGATTTAATTA
1 TGTTGTTTTTGATTTAATTA
5208701 TGTTGTTTTTGATTTAATTA
1 TGTTGTTTTTGATTTAATTA
5208721 TGTTGTTTTT
1 TGTTGTTTTT
5208731 TTAATGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.16, C:0.00, G:0.18, T:0.66
Consensus pattern (20 bp):
TGTTGTTTTTGATTTAATTA
Found at i:5211011 original size:21 final size:22
Alignment explanation
Indices: 5210962--5211019 Score: 73
Period size: 21 Copynumber: 2.6 Consensus size: 22
5210952 TACCCCATAG
*
5210962 GGTACCGATACCCCTATGCAAAGA
1 GGTACCGATA--CCTATCCAAAGA
*
5210986 GGTACCGATACCTATCCCAA-A
1 GGTACCGATACCTATCCAAAGA
5211007 GGTACCGATACCT
1 GGTACCGATACCT
5211020 CTTATGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 14 0.44
22 8 0.25
24 10 0.31
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (22 bp):
GGTACCGATACCTATCCAAAGA
Found at i:5214851 original size:30 final size:30
Alignment explanation
Indices: 5214817--5214890 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
5214807 AGAGAACCGA
* *
5214817 CGGTTCACACCGGTTTTATCGGTTTTCAAC
1 CGGTTCACACCGGTTTTACCGGTTCTCAAC
* *
5214847 CGGTTCAC-CCTGATTTTACCGGTTCTCAGC
1 CGGTTCACACC-GGTTTTACCGGTTCTCAAC
*
5214877 CGGTTC-TACCGGTT
1 CGGTTCACACCGGTT
5214891 CTGTGCTCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
29 5 0.14
30 31 0.86
ACGTcount: A:0.14, C:0.30, G:0.22, T:0.35
Consensus pattern (30 bp):
CGGTTCACACCGGTTTTACCGGTTCTCAAC
Found at i:5218420 original size:23 final size:23
Alignment explanation
Indices: 5218394--5218444 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
5218384 GTTAGTTTAA
* * * *
5218394 ATTAAATGAACTTGTTCATGGAC
1 ATTAAACGAACATGTCCATGAAC
5218417 ATTAAACGAACATGTCCATGAAC
1 ATTAAACGAACATGTCCATGAAC
5218440 -TTAAA
1 ATTAAA
5218445 AGGGAATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (23 bp):
ATTAAACGAACATGTCCATGAAC
Found at i:5221682 original size:9 final size:9
Alignment explanation
Indices: 5221664--5221722 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
5221654 GGTCGGGTCG
*
5221664 GGTCAGACC
1 GGTCAAACC
5221673 GGTCAAACC
1 GGTCAAACC
*
5221682 GGTTAAGACC
1 GGTCAA-ACC
5221692 GGTCAAACC
1 GGTCAAACC
* *
5221701 GATTCGAACC
1 G-GTCAAACC
*
5221711 GGTCGAACC
1 GGTCAAACC
5221720 GGT
1 GGT
5221723 TTCCAGCCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
9 27 0.64
10 15 0.36
ACGTcount: A:0.27, C:0.29, G:0.29, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:5221690 original size:19 final size:18
Alignment explanation
Indices: 5221668--5221723 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
5221658 GGGTCGGGTC
5221668 AGACCGGTCAAACCGGTT
1 AGACCGGTCAAACCGGTT
*
5221686 AAGACCGGTCAAACCGATT
1 -AGACCGGTCAAACCGGTT
* *
5221705 CGAACCGGTCGAACCGGTT
1 AG-ACCGGTCAAACCGGTT
5221724 TCCAGCCCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 1 0.03
19 31 0.97
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.16
Consensus pattern (18 bp):
AGACCGGTCAAACCGGTT
Found at i:5228843 original size:13 final size:14
Alignment explanation
Indices: 5228825--5228854 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
5228815 GTCAAAGGAA
5228825 GTCAACGGTC-ACG
1 GTCAACGGTCAACG
5228838 GTCAACGGTCAACG
1 GTCAACGGTCAACG
5228852 GTC
1 GTC
5228855 GGGTCGGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:5228866 original size:17 final size:17
Alignment explanation
Indices: 5228844--5228899 Score: 103
Period size: 17 Copynumber: 3.3 Consensus size: 17
5228834 CACGGTCAAC
5228844 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
5228861 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
*
5228878 AGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
5228895 GGTCA
1 GGTCA
5228900 GACCGGTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.45, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:5228871 original size:7 final size:7
Alignment explanation
Indices: 5228825--5228854 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
5228815 GTCAAAGGAA
5228825 GTCAACG
1 GTCAACG
5228832 GTC-ACG
1 GTCAACG
5228838 GTCAACG
1 GTCAACG
5228845 GTCAACG
1 GTCAACG
5228852 GTC
1 GTC
5228855 GGGTCGGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:5228919 original size:19 final size:19
Alignment explanation
Indices: 5228897--5229002 Score: 144
Period size: 19 Copynumber: 5.5 Consensus size: 19
5228887 TCGGGTCGGG
5228897 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
5228916 TCAGACCGATCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
5228935 TCAGACCGATCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
5228954 TCAGACCAGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
5228973 TC-GAACCGGTCGAAACCGG-
1 TCAG-ACCGGTC-AAACCGGT
5228992 TCAGAACCGGT
1 TCAG-ACCGGT
5229003 TGAAAACTGG
Statistics
Matches: 80, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
18 1 0.01
19 64 0.80
20 15 0.19
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.15
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:5228942 original size:10 final size:10
Alignment explanation
Indices: 5228897--5229003 Score: 66
Period size: 10 Copynumber: 11.1 Consensus size: 10
5228887 TCGGGTCGGG
5228897 TCAGACCGG-
1 TCAGACCGGT
*
5228906 TCAAACCGGT
1 TCAGACCGGT
*
5228916 TCAGACC-GA
1 TCAGACCGGT
*
5228925 TCAAACCGGT
1 TCAGACCGGT
*
5228935 TCAGACC-GA
1 TCAGACCGGT
*
5228944 TCAAACCGGT
1 TCAGACCGGT
*
5228954 TCAGACCAG-
1 TCAGACCGGT
*
5228963 TCAAACCGGT
1 TCAGACCGGT
5228973 TC-GAACCGG-
1 TCAG-ACCGGT
*
5228982 TCGAAACCGG-
1 TC-AGACCGGT
5228992 TCAGAACCGGT
1 TCAG-ACCGGT
5229003 T
1 T
5229004 GAAAACTGGT
Statistics
Matches: 73, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
9 32 0.44
10 40 0.55
11 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.24, T:0.16
Consensus pattern (10 bp):
TCAGACCGGT
Found at i:5232319 original size:21 final size:23
Alignment explanation
Indices: 5232281--5232325 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
5232271 CACAACTTGT
*
5232281 TCTGTCTTTATGACACAT-TTTTC
1 TCTGTCTCTATGA-ACATGTTTTC
5232304 TCTGTCTCTATG-ACATGTTTTC
1 TCTGTCTCTATGAACATGTTTTC
5232326 GGTCACTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 5 0.25
23 11 0.55
ACGTcount: A:0.16, C:0.22, G:0.11, T:0.51
Consensus pattern (23 bp):
TCTGTCTCTATGAACATGTTTTC
Found at i:5239223 original size:20 final size:20
Alignment explanation
Indices: 5239187--5239247 Score: 52
Period size: 20 Copynumber: 2.9 Consensus size: 20
5239177 TTTTGGTGCA
*
5239187 GAGGGAATCGATACCCCC-AT
1 GAGGGAA-CGATTCCCCCTAT
*
5239207 GAGGGAACAGATTCCCCCTTT
1 GAGGGAAC-GATTCCCCCTAT
5239228 GAAGGGGAACCGATTCCCCC
1 G-A-GGGAA-CGATTCCCCC
5239248 CACAGGGGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 1 0.03
20 15 0.44
21 2 0.06
22 1 0.03
23 14 0.41
24 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.16
Consensus pattern (20 bp):
GAGGGAACGATTCCCCCTAT
Found at i:5241281 original size:17 final size:17
Alignment explanation
Indices: 5241248--5241281 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5241238 TTGAATATTT
* *
5241248 TGGATTGTTTGATTTTG
1 TGGATTGTTAGACTTTG
5241265 TGGATTGTTAGACTTTG
1 TGGATTGTTAGACTTTG
5241282 GATTTGTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.29, T:0.53
Consensus pattern (17 bp):
TGGATTGTTAGACTTTG
Found at i:5243165 original size:14 final size:14
Alignment explanation
Indices: 5243140--5243178 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
5243130 TTTTTTTTTT
*
5243140 CTCTCTCTCTCTCC
1 CTCTCTCCCTCTCC
*
5243154 CTTTCTCCCTCTCC
1 CTCTCTCCCTCTCC
5243168 CTCTCTCCCTC
1 CTCTCTCCCTC
5243179 CCTCCTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (14 bp):
CTCTCTCCCTCTCC
Found at i:5243183 original size:22 final size:22
Alignment explanation
Indices: 5243140--5243183 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
5243130 TTTTTTTTTT
* **
5243140 CTCTCTCTCTCTCCCTTTCTCC
1 CTCTCCCTCTCTCCCTCCCTCC
5243162 CTCTCCCTCTCTCCCTCCCTCC
1 CTCTCCCTCTCTCCCTCCCTCC
5243184 TTCTGGTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCCCTCTCTCCCTCCCTCC
Found at i:5244384 original size:27 final size:26
Alignment explanation
Indices: 5244354--5244424 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
5244344 AAATATTTAG
* *
5244354 AAATTTTAAATTTTATTAAAATTAAAA
1 AAATTTTAAATTTTA-CAAAATGAAAA
*
5244381 AAA-TTAAATATTTTACAAAATGAAAA
1 AAATTTTAA-ATTTTACAAAATGAAAA
*
5244407 ATAATTTTAAATTATACA
1 A-AATTTTAAATTTTACA
5244425 TTTTAAAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
26 14 0.39
27 18 0.50
28 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.39
Consensus pattern (26 bp):
AAATTTTAAATTTTACAAAATGAAAA
Found at i:5244632 original size:14 final size:15
Alignment explanation
Indices: 5244600--5244637 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
5244590 AAAATCATAT
5244600 TTTTAATAAATTTTG
1 TTTTAATAAATTTTG
5244615 -TTTAA-AAATTTTG
1 TTTTAATAAATTTTG
5244628 TTTTAATAAA
1 TTTTAATAAA
5244638 ATGATTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.38
14 10 0.48
15 3 0.14
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (15 bp):
TTTTAATAAATTTTG
Found at i:5245228 original size:20 final size:20
Alignment explanation
Indices: 5245208--5245294 Score: 147
Period size: 20 Copynumber: 4.3 Consensus size: 20
5245198 GTTTTGAAAT
*
5245208 TCGCAACGCGAATATGTAAT
1 TCGCAACGCGAATATGTAAA
5245228 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATATGTAAA
*
5245248 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATATGTAAA
*
5245268 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATATGTAAA
5245288 TCGCAAC
1 TCGCAAC
5245295 ACAAAAGTCA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 65 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.23
Consensus pattern (20 bp):
TCGCAACGCGAATATGTAAA
Found at i:5245311 original size:20 final size:20
Alignment explanation
Indices: 5245288--5245333 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
5245278 AATTTGTAAA
5245288 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAAAAGTCAAAT
* *
5245308 TCGCAACACAGAAGTGAAAT
1 TCGCAACACAAAAGTCAAAT
5245328 TCGCAA
1 TCGCAA
5245334 AGCGTGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.24, G:0.15, T:0.15
Consensus pattern (20 bp):
TCGCAACACAAAAGTCAAAT
Found at i:5245312 original size:40 final size:41
Alignment explanation
Indices: 5245208--5245314 Score: 123
Period size: 40 Copynumber: 2.7 Consensus size: 41
5245198 GTTTTGAAAT
* *
5245208 TCGCAACGCGAATATGT-AATTCGCAACGCGAATATGTAAA
1 TCGCAACACGAATAAGTAAATTCGCAACGCGAATATGTAAA
* ** *
5245248 TCGCAACGCGAATTTGTAAA-TCGCAACGCGAATTTGTAAA
1 TCGCAACACGAATAAGTAAATTCGCAACGCGAATATGTAAA
5245288 TCGCAACAC-AA-AAGTCAAATTCGCAAC
1 TCGCAACACGAATAAGT-AAATTCGCAAC
5245315 ACAGAAGTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.03
39 5 0.08
40 50 0.85
41 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (41 bp):
TCGCAACACGAATAAGTAAATTCGCAACGCGAATATGTAAA
Found at i:5245312 original size:60 final size:60
Alignment explanation
Indices: 5245200--5245333 Score: 150
Period size: 60 Copynumber: 2.2 Consensus size: 60
5245190 GCAACTCAGT
* * *
5245200 TTTGAAATTCGCAACGCGAATATGTAATTCGCAACGCGAATATGTAAATCGCAACGCGAA
1 TTTGAAATTCGCAACGCGAATATGTAAATCGCAACACGAATAAGTAAATCGCAACGCGAA
* *
5245260 TTTGTAAA-TCGCAACGCGAATTTGTAAATCGCAACAC-AA-AAGTCAAATTCGCAACACAGAA
1 TTTG-AAATTCGCAACGCGAATATGTAAATCGCAACACGAATAAGT-AAA-TCGCAACGC-GAA
*
5245321 -GTGAAATTCGCAA
1 TTTGAAATTCGCAA
5245334 AGCGTGTTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
58 3 0.05
59 8 0.13
60 46 0.73
61 6 0.10
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (60 bp):
TTTGAAATTCGCAACGCGAATATGTAAATCGCAACACGAATAAGTAAATCGCAACGCGAA
Found at i:5245867 original size:20 final size:20
Alignment explanation
Indices: 5245844--5245882 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
5245834 TTTGAAACTT
5245844 AAATTAGCAACACGAAAATG
1 AAATTAGCAACACGAAAATG
*
5245864 AAATTCGCAACACGAAAAT
1 AAATTAGCAACACGAAAAT
5245883 CGCAACGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.18, G:0.13, T:0.15
Consensus pattern (20 bp):
AAATTAGCAACACGAAAATG
Found at i:5245928 original size:20 final size:20
Alignment explanation
Indices: 5245889--5245951 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
5245879 AAATCGCAAC
*
5245889 GCGATTTT-AGTTTCGTGTT
1 GCGATTTTCATTTTCGTGTT
*
5245908 GCGATTTTCATTTTCGCGTT
1 GCGATTTTCATTTTCGTGTT
5245928 GCGATTTTCATTTTCGTGTT
1 GCGATTTTCATTTTCGTGTT
5245948 GCGA
1 GCGA
5245952 ATTTAAGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 8 0.20
20 32 0.80
ACGTcount: A:0.11, C:0.16, G:0.24, T:0.49
Consensus pattern (20 bp):
GCGATTTTCATTTTCGTGTT
Found at i:5245962 original size:20 final size:20
Alignment explanation
Indices: 5245892--5245962 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
5245882 TCGCAACGCG
*
5245892 ATTTTAGTTTCGTGTTGCGA
1 ATTTCAGTTTCGTGTTGCGA
* * *
5245912 TTTTCATTTTCGCGTTGCGA
1 ATTTCAGTTTCGTGTTGCGA
* *
5245932 TTTTCATTTTCGTGTTGCGA
1 ATTTCAGTTTCGTGTTGCGA
*
5245952 ATTTAAGTTTC
1 ATTTCAGTTTC
5245963 AAAAACTACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.52
Consensus pattern (20 bp):
ATTTCAGTTTCGTGTTGCGA
Found at i:5250728 original size:23 final size:24
Alignment explanation
Indices: 5250685--5250737 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
5250675 TTTCATTCTT
5250685 TTTCTTCTTTTCGAGTACTTTCAA
1 TTTCTTCTTTTCGAGTACTTTCAA
* * *
5250709 TTTCTTCTTTT-GAGTGCTTTGAT
1 TTTCTTCTTTTCGAGTACTTTCAA
5250732 TTTCTT
1 TTTCTT
5250738 TGCTGGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.11, C:0.17, G:0.11, T:0.60
Consensus pattern (24 bp):
TTTCTTCTTTTCGAGTACTTTCAA
Found at i:5253793 original size:21 final size:22
Alignment explanation
Indices: 5253761--5253838 Score: 81
Period size: 21 Copynumber: 3.6 Consensus size: 22
5253751 AATTCACATG
* *
5253761 TCATTGTTCAAGAGGCTCCTCC
1 TCATCGTTCAAGAGGCCCCTCC
*
5253783 T-AT-GATTCAAGAGGCCCCTTC
1 TCATCG-TTCAAGAGGCCCCTCC
5253804 TCATCGTTCAAGAGGCCCCTCC
1 TCATCGTTCAAGAGGCCCCTCC
* *
5253826 -CACCGATCAAGAG
1 TCATCGTTCAAGAG
5253839 CCCGATTCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
20 1 0.02
21 28 0.58
22 18 0.38
23 1 0.02
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.24
Consensus pattern (22 bp):
TCATCGTTCAAGAGGCCCCTCC
Found at i:5253816 original size:22 final size:21
Alignment explanation
Indices: 5253765--5253825 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 21
5253755 CACATGTCAT
*
5253765 TGTTCAAGAGGCTCCTCCT-A
1 TGTTCAAGAGGCCCCTCCTCA
*
5253785 TGATTCAAGAGGCCCCTTCTCA
1 TG-TTCAAGAGGCCCCTCCTCA
5253807 TCGTTCAAGAGGCCCCTCC
1 T-GTTCAAGAGGCCCCTCC
5253826 CACCGATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.06
21 15 0.43
22 17 0.49
23 1 0.03
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.26
Consensus pattern (21 bp):
TGTTCAAGAGGCCCCTCCTCA
Found at i:5255246 original size:16 final size:15
Alignment explanation
Indices: 5255221--5255250 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
5255211 AAGAATTATT
5255221 ATTTTTGTTTAATTG
1 ATTTTTGTTTAATTG
5255236 ATTTGTTGTTTAATT
1 ATTT-TTGTTTAATT
5255251 TCAATATGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.00, G:0.13, T:0.67
Consensus pattern (15 bp):
ATTTTTGTTTAATTG
Found at i:5255390 original size:14 final size:14
Alignment explanation
Indices: 5255368--5255405 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
5255358 GAAAGTCAAA
*
5255368 TTCGTGTTGCGATT
1 TTCGCGTTGCGATT
5255382 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
*
5255396 TTTGCGTTGC
1 TTCGCGTTGC
5255406 AAATTTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.05, C:0.18, G:0.29, T:0.47
Consensus pattern (14 bp):
TTCGCGTTGCGATT
Found at i:5255417 original size:20 final size:20
Alignment explanation
Indices: 5255392--5255440 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
5255382 TTCGCGTTGC
*
5255392 GATTTTTGCGTTGCAAATTT
1 GATTTTCGCGTTGCAAATTT
*
5255412 GATTTTCGCGTTGCGAATTT
1 GATTTTCGCGTTGCAAATTT
*
5255432 GACTTTCGC
1 GATTTTCGC
5255441 AATAATCGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.45
Consensus pattern (20 bp):
GATTTTCGCGTTGCAAATTT
Found at i:5255459 original size:29 final size:29
Alignment explanation
Indices: 5255425--5255486 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
5255415 TTTCGCGTTG
*
5255425 CGAATTTGACTTTCGCAATAATCGCAACA
1 CGAATTTGACTTTCGCAACAATCGCAACA
*
5255454 CGAATTTGACTTTCGCAACAATCGCAACG
1 CGAATTTGACTTTCGCAACAATCGCAACA
5255483 CGAA
1 CGAA
5255487 AATCGTAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (29 bp):
CGAATTTGACTTTCGCAACAATCGCAACA
Found at i:5255739 original size:12 final size:12
Alignment explanation
Indices: 5255724--5255764 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
5255714 AAGCCGGTTG
*
5255724 TGATTGAGATTT
1 TGATTGTGATTT
*
5255736 TGATTTTGATTT
1 TGATTGTGATTT
5255748 TGATTGTGATTT
1 TGATTGTGATTT
5255760 TGATT
1 TGATT
5255765 TCCTTTTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.22, T:0.59
Consensus pattern (12 bp):
TGATTGTGATTT
Found at i:5255740 original size:6 final size:6
Alignment explanation
Indices: 5255731--5255765 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
5255721 TTGTGATTGA
*
5255731 GATTTT GATTTT GATTTT GATTGT GATTTT GATTT
1 GATTTT GATTTT GATTTT GATTTT GATTTT GATTT
5255766 CCTTTTGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (6 bp):
GATTTT
Found at i:5258068 original size:24 final size:24
Alignment explanation
Indices: 5258034--5258087 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
5258024 CTGAAACATC
5258034 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
5258058 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
5258082 ATCAAA
1 ATCAAA
5258088 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:5258101 original size:24 final size:24
Alignment explanation
Indices: 5258034--5258101 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
5258024 CTGAAACATC
* * *
5258034 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
5258058 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
5258082 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
5258102 TAGTACTCAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:5258865 original size:14 final size:15
Alignment explanation
Indices: 5258829--5258866 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
5258819 GAAATCATTG
5258829 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
5258844 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
5258859 AAAAATTA
1 AAAAATTA
5258867 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:5259048 original size:20 final size:20
Alignment explanation
Indices: 5259005--5259114 Score: 86
Period size: 20 Copynumber: 5.6 Consensus size: 20
5258995 AAAACATTTA
*
5259005 TGTTGCGAAAATAAAA-TC-
1 TGTTGCGAAATTAAAATTCG
5259023 TGTTGCGAAATTAAAATTCG
1 TGTTGCGAAATTAAAATTCG
5259043 TGTTGCG-AATTCGAAAA-TCG
1 TGTTGCGAAATT--AAAATTCG
* **
5259063 AGTTGCGAAAACAAAATTCG
1 TGTTGCGAAATTAAAATTCG
* * * *
5259083 TGTTACGAATTTGAAATTCCT
1 TGTTGCGAAATTAAAATT-CG
5259104 TGTTGC-AAATT
1 TGTTGCGAAATT
5259115 TGGAAACCGC
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
18 15 0.21
19 10 0.14
20 35 0.49
21 12 0.17
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
TGTTGCGAAATTAAAATTCG
Found at i:5259131 original size:61 final size:58
Alignment explanation
Indices: 5259006--5259133 Score: 139
Period size: 61 Copynumber: 2.2 Consensus size: 58
5258996 AAACATTTAT
* * * *
5259006 GTTGCGAAAATAAAATCTGTTGCGAAATTAAAATTCGTGTTGCGAATTCGAAAATCGA
1 GTTGCGAAAACAAAATCTGTTACGAAATTAAAATTCGTGTTGCAAATTCGAAAACCGA
* * * * * *
5259064 GTTGCGAAAACAAAATTCGTGTTACGAATTTGAAATTCCTTGTTGCAAATTTGGAAACCGC
1 GTTGCGAAAACAAAA-TC-TGTTACGAAATTAAAATT-CGTGTTGCAAATTCGAAAACCGA
5259125 GTTGCGAAA
1 GTTGCGAAA
5259134 TTAGAGTTCG
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
58 14 0.25
59 2 0.04
60 15 0.26
61 26 0.46
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (58 bp):
GTTGCGAAAACAAAATCTGTTACGAAATTAAAATTCGTGTTGCAAATTCGAAAACCGA
Found at i:5270039 original size:37 final size:36
Alignment explanation
Indices: 5269989--5270097 Score: 148
Period size: 35 Copynumber: 3.0 Consensus size: 36
5269979 CATTATCAAC
*
5269989 AAACATCTACCAAACTTTGAAAAACTATTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAAAC-ATTTTTCAAAG
* *
5270026 AAACATTTACCAAACTTTGAAAACCA-TTTTCAAAA
1 AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG
* *
5270061 AAATATTTACCAAACTTTGAAAATCATTTTTTCAAAG
1 AAACATTTACCAAACTTTGAAAAACA-TTTTTCAAAG
5270098 TTGGTTGCCA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
35 32 0.50
36 1 0.02
37 31 0.48
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (36 bp):
AAACATTTACCAAACTTTGAAAAACATTTTTCAAAG
Found at i:5270089 original size:21 final size:21
Alignment explanation
Indices: 5270029--5270089 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 21
5270019 TTCAAAGAAA
*
5270029 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAT
*
5270050 CATTT-TCAAA-----AAAAT
1 CATTTACCAAACTTTGAAAAT
5270065 -ATTTACCAAACTTTGAAAAT
1 CATTTACCAAACTTTGAAAAT
5270085 CATTT
1 CATTT
5270090 TTTCAAAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
20 9 0.30
21 9 0.30
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.34
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAT
Found at i:5274657 original size:37 final size:36
Alignment explanation
Indices: 5274598--5274717 Score: 154
Period size: 37 Copynumber: 3.3 Consensus size: 36
5274588 ATCCCATTAT
* *
5274598 CATTTTTC-AACAAACATATACCAAACTTTGAAAAA
1 CATTTTTCAAAAAAACATTTACCAAACTTTGAAAAA
* *
5274633 CTATTTTTCAAAGAAACATTTACCAAACTTTGAAAAC
1 C-ATTTTTCAAAAAAACATTTACCAAACTTTGAAAAA
* *
5274670 CA-TTTTCAAAAAAATATTTACCAAACTTTGAAAAT
1 CATTTTTCAAAAAAACATTTACCAAACTTTGAAAAA
5274705 CATTTTTTCAAAA
1 CA-TTTTTCAAAA
5274718 TTGGTTGCCA
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
35 33 0.44
36 8 0.11
37 34 0.45
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.33
Consensus pattern (36 bp):
CATTTTTCAAAAAAACATTTACCAAACTTTGAAAAA
Found at i:5274689 original size:35 final size:35
Alignment explanation
Indices: 5274601--5274710 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
5274591 CCATTATCAT
* * *
5274601 TTTTC-AACAAACATATACCAAACTTTGAAAAACTA
1 TTTTCAAAAAAACATTTACCAAACTTTG-AAAACCA
*
5274636 TTTTTCAAAGAAACATTTACCAAACTTTGAAAACCA
1 -TTTTCAAAAAAACATTTACCAAACTTTGAAAACCA
* *
5274672 TTTTCAAAAAAATATTTACCAAACTTTGAAAATCA
1 TTTTCAAAAAAACATTTACCAAACTTTGAAAACCA
5274707 TTTT
1 TTTT
5274711 TTCAAAATTG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
35 36 0.54
36 11 0.16
37 20 0.30
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (35 bp):
TTTTCAAAAAAACATTTACCAAACTTTGAAAACCA
Found at i:5274709 original size:21 final size:21
Alignment explanation
Indices: 5274649--5274709 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 21
5274639 TTCAAAGAAA
*
5274649 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAT
*
5274670 CATTT-TCAAA-----AAAAT
1 CATTTACCAAACTTTGAAAAT
5274685 -ATTTACCAAACTTTGAAAAT
1 CATTTACCAAACTTTGAAAAT
5274705 CATTT
1 CATTT
5274710 TTTCAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 14
0.64 0.06 0.30
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
20 9 0.30
21 9 0.30
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.34
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAT
Found at i:5275873 original size:23 final size:22
Alignment explanation
Indices: 5275847--5275893 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
5275837 ATAAAGTACA
*
5275847 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAG-GCTTAT
**
5275870 ATAATGTAATAGGTAGGCTTAT
1 ATAACATAATAGGTAGGCTTAT
5275892 AT
1 AT
5275894 TTACCTATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (22 bp):
ATAACATAATAGGTAGGCTTAT
Found at i:5276398 original size:23 final size:23
Alignment explanation
Indices: 5276368--5276430 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5276358 ACTTTACAAC
5276368 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5276391 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5276414 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5276431 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5276881 original size:23 final size:23
Alignment explanation
Indices: 5276851--5276913 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5276841 ACTTTACAAC
5276851 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5276874 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5276897 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5276914 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5277364 original size:23 final size:23
Alignment explanation
Indices: 5277334--5277396 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5277324 ACTTTACAAC
5277334 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5277357 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5277380 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5277397 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5277845 original size:23 final size:23
Alignment explanation
Indices: 5277815--5277877 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5277805 ACTTTACAAC
5277815 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5277838 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5277861 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5277878 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5278328 original size:23 final size:23
Alignment explanation
Indices: 5278298--5278360 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5278288 ACTTTACAAC
5278298 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5278321 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5278344 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5278361 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5278807 original size:23 final size:23
Alignment explanation
Indices: 5278777--5278839 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
5278767 ACTTTACAAC
*
5278777 TACCTATTACATTATATAAATGA
1 TACCTATTACATTATATAAACGA
* *
5278800 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5278823 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5278840 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5279288 original size:23 final size:23
Alignment explanation
Indices: 5279258--5279320 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5279248 ACTTTACAAC
5279258 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5279281 TACCTATTACATTATATAACCGC
1 TACCTATTACATTATATAAACGA
*
5279304 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5279321 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5279442 original size:482 final size:482
Alignment explanation
Indices: 5275967--5283310 Score: 13319
Period size: 482 Copynumber: 15.5 Consensus size: 482
5275957 TTATAATATG
* *
5275967 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAATTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5276032 TCAATTTTTTTTAATAGTGTTTCATGTTTTTCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5276097 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
* *
5276162 TAACCAAAGATAATAATAAATATGTAATATATATTTTTATTATTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
5276227 ATC----CGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
5276288 CAAAAGATAACCTTAAATTAATGTTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5276353 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5276418 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
5276445 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACAC-TTTTTTTAAAGTTATGTAATTTATGT
*
5276510 TTCAATTTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5276575 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
5276640 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5276705 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
*
5276770 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGAACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
5276835 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5276900 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
*
5276928 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTTAAAGTAATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACAC-TTTTTTTAAAGTTATGTAATTTATGT
*
5276993 TTCAATTTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5277058 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
*
5277123 TTAACCAAAGATAATAATAAATGTGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5277188 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
5277253 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
5277318 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5277383 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
5277411 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
*
5277476 TCAA-TTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5277540 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
5277605 TAACCAAAGATAATAATAAATGTGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
5277670 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5277735 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5277800 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5277865 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
*
5277892 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACATTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACA-CTTTTTTTAAAGTTATGTAATTTATGT
*
5277957 TTCAATTTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5278022 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
*
5278087 TTAACCAAAGATAATAATAAATGTGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5278152 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
5278217 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
5278282 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5278347 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
5278375 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACAC-TTTTTTTAAAGTTATGTAATTTATGT
*
5278440 TTCAA-TTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5278504 AC-AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
5278568 TTAACCAAAGATAATAATAAATATGTAATATATA--TTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5278631 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
5278696 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
*
5278761 ATAGATACTTTACAACTACCTATTACATTATATAAATGATACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5278826 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
5278854 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5278919 TCAATTTTTTTTAATAGTGTTTCATGTTTTACACTTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5278984 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATGATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5279049 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5279114 ATCGTAATGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5279178 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
5279243 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAACCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5279308 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
5279335 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACAC-TTTTTTTAAAGTTATGTAATTTATGT
**
5279400 TTCAATTTTTTTTAATAGTGTTTTTTGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5279465 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
*
5279530 TTAACCAAAGATAATAATAAATGTGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5279595 TATCGTAATGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
5279659 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
5279724 ATAG----------A-TA-CT-TTAC--------AAC--TACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5279766 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
*
5279794 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5279859 TCAATTTTTTTTAATAGTGTTTCATATTTTACACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5279924 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATGATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5279989 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5280054 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5280119 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAA-G-
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5280182 --G--A---TA-AA-TA-CT-TTAC--------AAC--TACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5280226 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
*
5280253 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5280318 TCAATTTTTTTTAATAGTGTTTCATATTTTACACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5280383 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATGATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5280448 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5280513 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
5280578 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5280643 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5280708 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
5280735 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACAC-TTTTTTTAAAGTTATGTAATTTATGT
*
5280800 TTCAA-TTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
65 TTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTAC
5280864 AC-AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
130 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATA
5280928 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
195 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
5280993 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
260 TATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
5281058 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
325 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
*
5281123 ATAGATACTTTACAACTACCTATTACATTATATAAATGATACCTATTACATTATATAAGCGCTAC
390 ATAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTAC
5281188 CTATTACATCATATTTTTACCTATTATA
455 CTATTACATCATATTTTTACCTATTATA
5281216 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5281281 TCAATTTTTTTTAATAGTGTTTCATGTTTTACACTTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5281346 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATGATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5281411 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5281476 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5281541 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
5281606 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAACCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5281671 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
5281698 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
*
5281763 TCAATTTTTTTTAATAGTGTTTTATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5281828 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
5281893 TAACCAAAGATAATAATAAATGTGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5281958 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5282023 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5282088 TAG----------A-TA-CT-TTAC--------AAC--TACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5282130 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
*
5282157 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5282222 TCAA-TTTTTTTAATAGTGTTTCATATTTTACACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5282286 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATGATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5282351 TAACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTGTTTTTAATTTAATAAT-A-ATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5282412 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5282477 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAA-G-
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
5282540 --G--A---TA-AA-TA-CT-TTAC--------AAC--TACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
5282584 TATTACATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
*
5282611 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
* *
5282676 TCAATTTTTTTTAATAGTGTTTCATATTTTACACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
5282741 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5282806 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
196 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
5282871 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
261 ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
5282936 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
326 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
5283001 TAAATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
391 TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
*
5283066 TATTATATCATATTTTTACCTATTATA
456 TATTACATCATATTTTTACCTATTATA
* * * *
5283093 TTGAAAGTGTTCATACTTTTTATAAAAAGAATTGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
5283158 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
66 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
*
5283222 CAAAAAATTATTTGATT-TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATAT
131 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
5283286 TAACCAAAGATAATAATAAATATGT
196 TAACCAAAGATAATAATAAATATGT
5283311 TTTCCACAGT
Statistics
Matches: 6716, Mismatches: 74, Indels: 150
0.97 0.01 0.02
Matches are distributed among these distances:
450 1 0.00
453 1 0.00
454 266 0.04
455 151 0.02
456 31 0.00
457 31 0.00
458 373 0.06
459 911 0.14
460 2 0.00
461 6 0.00
463 1 0.00
465 2 0.00
468 4 0.00
469 12 0.00
470 8 0.00
471 8 0.00
472 10 0.00
478 67 0.01
479 567 0.08
480 203 0.03
481 1308 0.19
482 1513 0.23
483 1240 0.18
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (482 bp):
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGACACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACA
CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
ATCGTAATGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
TAGATACTTTACAACTACCTATTACATTATATAAACGATACCTATTACATTATATAAGCGCTACC
TATTACATCATATTTTTACCTATTATA
Found at i:5280688 original size:23 final size:23
Alignment explanation
Indices: 5280658--5280720 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5280648 ACTTTACAAC
5280658 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5280681 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5280704 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5280721 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5281169 original size:23 final size:23
Alignment explanation
Indices: 5281139--5281201 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
5281129 ACTTTACAAC
*
5281139 TACCTATTACATTATATAAATGA
1 TACCTATTACATTATATAAACGA
* *
5281162 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
5281185 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5281202 TTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5281651 original size:23 final size:23
Alignment explanation
Indices: 5281621--5281683 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
5281611 ACTTTACAAC
5281621 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
5281644 TACCTATTACATTATATAACCGC
1 TACCTATTACATTATATAAACGA
*
5281667 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5281684 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5283078 original size:23 final size:23
Alignment explanation
Indices: 5283015--5283070 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
5283005 TACTTTACAA
5283015 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATAAACG
* *
5283038 ATACCTATTACATTATATAAGCG
1 CTACCTATTACATTATATAAACG
5283061 CTACCTATTA
1 CTACCTATTA
5283071 TATCATATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
CTACCTATTACATTATATAAACG
Found at i:5283761 original size:230 final size:229
Alignment explanation
Indices: 5283110--5283819 Score: 1293
Period size: 229 Copynumber: 3.1 Consensus size: 229
5283100 TGTTCATACT
5283110 TTTTATAAAAA-GA-ATTGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAAT
1 TTTTATAAAAATGATA-T-ATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAAT
5283172 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
64 AGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGA
5283237 TTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAA
129 TTTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAA
5283302 TAAATATGTTTTCCACAGTGAAATAAGTATAAACAC
194 TAAATATGTTTTCCACAGTGAAATAAGTATAAACAC
*
5283338 TTTTATAAAAATGATATATATTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAG
1 TTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAG
5283403 TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATT
66 TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATT
*
5283468 ATTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATA
131 TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATA
5283533 AATATGTTTTCCACAGTGAAATAAGTATAAACAC
196 AATATGTTTTCCACAGTGAAATAAGTATAAACAC
5283567 TTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAG
1 TTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAG
*
5283632 TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACATAAAATTATTTGATT
66 TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATT
5283697 GTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAAT
131 -TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAAT
* **
5283762 AAATATATTTT-CACAGTGAAATAAGTATGGACAC
195 AAATATGTTTTCCACAGTGAAATAAGTATAAACAC
* *
5283796 TTTTATAAAAAGGATAGATACTTT
1 TTTTATAAAAATGATATATACTTT
5283820 ACAATATAAC
Statistics
Matches: 468, Mismatches: 10, Indels: 7
0.96 0.02 0.01
Matches are distributed among these distances:
228 45 0.10
229 349 0.75
230 74 0.16
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (229 bp):
TTTTATAAAAATGATATATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAG
TGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATT
TTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATA
AATATGTTTTCCACAGTGAAATAAGTATAAACAC
Found at i:5285767 original size:16 final size:16
Alignment explanation
Indices: 5285746--5285812 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
5285736 TAAATAAACG
5285746 AACATAAACGAACACA
1 AACATAAACGAACACA
*
5285762 AACATAAACGAACACG
1 AACATAAACGAACACA
* *
5285778 AACATAAATGAACACG
1 AACATAAACGAACACA
* *
5285794 AACATAAGCGAACATA
1 AACATAAACGAACACA
5285810 AAC
1 AAC
5285813 GTTGAAGACC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.58, C:0.22, G:0.10, T:0.09
Consensus pattern (16 bp):
AACATAAACGAACACA
Done.