Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009625.1 Hibiscus syriacus cultivar Beakdansim tig00117017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6938204
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 25
Found at i:1864582 original size:18 final size:17
Alignment explanation
Indices: 1864557--1864593 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
1864547 GAAGAAAACC
*
1864557 AAAAAGAAAGGAAAAAG
1 AAAAAGAAAAGAAAAAG
1864574 AAAATAGAAAAGAAAAAG
1 AAAA-AGAAAAGAAAAAG
1864592 AA
1 AA
1864594 GTCGAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAAGAAAAAG
Found at i:1868961 original size:385 final size:386
Alignment explanation
Indices: 1868247--1869022 Score: 1333
Period size: 385 Copynumber: 2.0 Consensus size: 386
1868237 TTGGAGATGC
*
1868247 AAGTCCATTTTTGACGCTGAATTGGATCACATCATCCCCCTTCTTTAAAGCGATTTGACCTCAAA
1 AAGTCCATTTTTGACACTGAATTGGATCACATCATCCCCCTTCTTTAAAGCGATTTGACCTCAAA
* * * *
1868312 TTGAAGGGTGGTTTCTTTTCAACGTTCTTCTATTCCATAGTTGTTGTTTCGTCAGAAATTGGGAT
66 TCGAAGGGTGGTTTCTTTTCAACGTTCTTCAATTCCATAGTTATTGTTTCGTCAAAAATTGGGAT
*
1868377 CCCTTCAATATGCTCTTCAGTGAGATATGCCCATTTAATTTTGCTTTGAACGTTTAGGTCCCTTG
131 CCCTTCAATATGCTCTTCAGTGAGATATGCCCATGTAATTTTGCTTTGAACGTTTAGGTCCCTTG
*
1868442 ATATCCCAAAAATGGTGTTTCCTAATATACCAATTGGCATGATCATTGAGTCCTCGTAGGTCACA
196 ATATCCCAAAAATGGTGTTTCCTAATATACCAATTGGCATGATCATTGAGTCCTCATAGGTCACA
*
1868507 TCCATTGGTTCTTTTAAAGACACGTTCTTTGAATGAAAAATGGTGCCCTTTTGCTGTTCAATAGA
261 TCCATTGGTTCTTTTAAAGACACGCTCTTTGAATGAAAAATGGTGCCCTTTTGCTGTTCAATAGA
1868572 CACATCC-TT-TGAAAAATTATGTTCATTTGCTGCTCAATGGACACATCTTTTGGATTCCCA
326 CACATCCTTTATGAAAAATTATGTTC-TTTGCTGCTCAATGGACACATCTTTTGGATTCCCA
* * *
1868632 AAGTCCATTTTTGACACTGAATTGGATCATATCATCCCCGTTCTTTAAAGTGATTTGACCTCAAA
1 AAGTCCATTTTTGACACTGAATTGGATCACATCATCCCCCTTCTTTAAAGCGATTTGACCTCAAA
*
1868697 TCGAAGGGTGGTTTCTTTTCAACGTTCCTT-AATTCCATAGTTATTGTTTCTTCAAAAATTGGGA
66 TCGAAGGGTGGTTTCTTTTCAACGTT-CTTCAATTCCATAGTTATTGTTTCGTCAAAAATTGGGA
*
1868761 TCCCTTCAATATGCTCTTGAGTGAGATATGCCCATGTAATTTTGCTTTGAACGTTTAGGTCCCTT
130 TCCCTTCAATATGCTCTTCAGTGAGATATGCCCATGTAATTTTGCTTTGAACGTTTAGGTCCCTT
*
1868826 GATATCCCAAAAGTGGTGTTTCCTAATATACCAATTGGCATGATCATTGAGTCCTCATAGGTCAC
195 GATATCCCAAAAATGGTGTTTCCTAATATACCAATTGGCATGATCATTGAGTCCTCATAGGTCAC
* * *
1868891 ATCCATTGGTTCTTTTAAATACACGCTCTTTGAATGAAAAATTGTGCCCTTTTGCTGTTCAATGG
260 ATCCATTGGTTCTTTTAAAGACACGCTCTTTGAATGAAAAATGGTGCCCTTTTGCTGTTCAATAG
*
1868956 ACACATCCTTTGAATGAAAAATTGTGTTCTTTGCTGCTCAATGGACACATCTTTTGGATTCCCA
325 ACACATCCTTT--ATGAAAAATTATGTTCTTTGCTGCTCAATGGACACATCTTTTGGATTCCCA
1869020 AAG
1 AAG
1869023 GTCACTTCTC
Statistics
Matches: 368, Mismatches: 18, Indels: 7
0.94 0.05 0.02
Matches are distributed among these distances:
385 311 0.85
386 5 0.01
388 38 0.10
389 14 0.04
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (386 bp):
AAGTCCATTTTTGACACTGAATTGGATCACATCATCCCCCTTCTTTAAAGCGATTTGACCTCAAA
TCGAAGGGTGGTTTCTTTTCAACGTTCTTCAATTCCATAGTTATTGTTTCGTCAAAAATTGGGAT
CCCTTCAATATGCTCTTCAGTGAGATATGCCCATGTAATTTTGCTTTGAACGTTTAGGTCCCTTG
ATATCCCAAAAATGGTGTTTCCTAATATACCAATTGGCATGATCATTGAGTCCTCATAGGTCACA
TCCATTGGTTCTTTTAAAGACACGCTCTTTGAATGAAAAATGGTGCCCTTTTGCTGTTCAATAGA
CACATCCTTTATGAAAAATTATGTTCTTTGCTGCTCAATGGACACATCTTTTGGATTCCCA
Found at i:1869004 original size:44 final size:45
Alignment explanation
Indices: 1868918--1869011 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 45
1868908 AATACACGCT
*
1868918 CTTTGAATGAAAAATTGTGCCCTTTTGCTGTTCAATGGACACATC
1 CTTTGAATGAAAAATTGTGCCCTTTTGCTGCTCAATGGACACATC
**
1868963 CTTTGAATGAAAAATTGTGTTC-TTTGCTGCTCAATGGACACATC
1 CTTTGAATGAAAAATTGTGCCCTTTTGCTGCTCAATGGACACATC
*
1869007 TTTTG
1 CTTTG
1869012 GATTCCCAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 25 0.56
45 20 0.44
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (45 bp):
CTTTGAATGAAAAATTGTGCCCTTTTGCTGCTCAATGGACACATC
Found at i:1871116 original size:12 final size:12
Alignment explanation
Indices: 1871099--1871123 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1871089 GGGGTAGAAT
1871099 AGAAAAAGGATA
1 AGAAAAAGGATA
1871111 AGAAAAAGGATA
1 AGAAAAAGGATA
1871123 A
1 A
1871124 AGTAATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (12 bp):
AGAAAAAGGATA
Found at i:1874796 original size:22 final size:22
Alignment explanation
Indices: 1874756--1874797 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1874746 AAATATATGG
* *
1874756 TTCATAATAATAACTTCATACA
1 TTCATAATAACAACATCATACA
*
1874778 TTCATAATAACATCATCATA
1 TTCATAATAACAACATCATA
1874798 ACTATAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (22 bp):
TTCATAATAACAACATCATACA
Found at i:1876928 original size:11 final size:11
Alignment explanation
Indices: 1876912--1876936 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1876902 AATACAAAAA
1876912 GAAGTGCAAGT
1 GAAGTGCAAGT
1876923 GAAGTGCAAGT
1 GAAGTGCAAGT
1876934 GAA
1 GAA
1876937 ACAAATCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.36, T:0.16
Consensus pattern (11 bp):
GAAGTGCAAGT
Found at i:1876976 original size:23 final size:23
Alignment explanation
Indices: 1876948--1877000 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 23
1876938 CAAATCAGTA
*
1876948 AAGAAATTGAAGCACTCCAAAAG
1 AAGAAATTGAAGCACTCAAAAAG
**
1876971 AAGAAAATTTCAGCACTCAAAAAG
1 AAG-AAATTGAAGCACTCAAAAAG
1876995 AAGAAA
1 AAGAAA
1877001 AAAACAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.57, C:0.15, G:0.15, T:0.13
Consensus pattern (23 bp):
AAGAAATTGAAGCACTCAAAAAG
Found at i:1887465 original size:41 final size:45
Alignment explanation
Indices: 1887407--1887507 Score: 115
Period size: 49 Copynumber: 2.3 Consensus size: 45
1887397 ATAACTAAAG
1887407 AATAAAAT--TAATAACT-AAACA-TGTTTT-AACC-TAATTCCT
1 AATAAAATAATAATAACTAAAACATTGTTTTCAACCTTAATTCCT
*
1887446 AATAAAATAATAATAACTAAAATATTGTTTTAACCCAACCTTAATTCCT
1 AATAAAATAATAATAACTAAAACATTGTTTT----CAACCTTAATTCCT
1887495 AATAAAATAATAA
1 AATAAAATAATAA
1887508 ATCTGATCCT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
39 8 0.16
41 8 0.16
42 4 0.08
43 6 0.12
48 4 0.08
49 21 0.41
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (45 bp):
AATAAAATAATAATAACTAAAACATTGTTTTCAACCTTAATTCCT
Found at i:1889878 original size:42 final size:43
Alignment explanation
Indices: 1889830--1889917 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
1889820 TTACCTTATA
1889830 CATCAAGGCATCA-CATTATAATTCATTTTAGTAGTTCATATG
1 CATCAAGGCATCATCATTATAATTCATTTTAGTAGTTCATATG
1889872 CATCAAGGCATCATCATTATAATTCATTTTAGTAGTTCATATG
1 CATCAAGGCATCATCATTATAATTCATTTTAGTAGTTCATATG
1889915 CAT
1 CAT
1889918 TCATATTAGC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 13 0.29
43 32 0.71
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (43 bp):
CATCAAGGCATCATCATTATAATTCATTTTAGTAGTTCATATG
Found at i:1891352 original size:27 final size:26
Alignment explanation
Indices: 1891322--1891377 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
1891312 AAAAATCAGA
*
1891322 AAACAAAGTGAAGCACTC-AAAAGAAAG
1 AAACAAA-TCAAGCACTCAAAAAG-AAG
*
1891349 AAACAAATCCAGCACTCAAAAAGAAG
1 AAACAAATCAAGCACTCAAAAAGAAG
1891375 AAA
1 AAA
1891378 AGCACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.61, C:0.18, G:0.14, T:0.07
Consensus pattern (26 bp):
AAACAAATCAAGCACTCAAAAAGAAG
Found at i:1893559 original size:14 final size:14
Alignment explanation
Indices: 1893540--1893578 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
1893530 TAATGGGAAT
*
1893540 TAATCCTTGCAAAA
1 TAATCCCTGCAAAA
*
1893554 TAATCCCTGCGAAA
1 TAATCCCTGCAAAA
*
1893568 TAATCTCTGCA
1 TAATCCCTGCA
1893579 TATAGACAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (14 bp):
TAATCCCTGCAAAA
Found at i:1894247 original size:21 final size:21
Alignment explanation
Indices: 1894221--1894263 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1894211 TTTAGAGGCA
1894221 CCTTCTTGTCACACAAAACTC
1 CCTTCTTGTCACACAAAACTC
1894242 CCTTCTTGTCACACAAAACTC
1 CCTTCTTGTCACACAAAACTC
1894263 C
1 C
1894264 AGTAGCGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.40, G:0.05, T:0.28
Consensus pattern (21 bp):
CCTTCTTGTCACACAAAACTC
Found at i:1898989 original size:68 final size:68
Alignment explanation
Indices: 1898907--1899042 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
1898897 AAAATCAGCC
1898907 CTAAATACCTTCGTTTACAATTTTTTTTAAAATTTTGGCTTTTTTATTTTTTTTTATTTTGTTTT
1 CTAAATACCTTCGTTTACAATTTTTTTTAAAATTTTGGCTTTTTTATTTTTTTTTATTTTGTTTT
1898972 TGT
66 TGT
1898975 CTAAATACCTTCGTTTACAATTTTTTTTAAAATTTTGGCTTTTTTATTTTTTTTTATTTTGTTTT
1 CTAAATACCTTCGTTTACAATTTTTTTTAAAATTTTGGCTTTTTTATTTTTTTTTATTTTGTTTT
1899040 TGT
66 TGT
1899043 TTTGTTTTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.19, C:0.09, G:0.07, T:0.65
Consensus pattern (68 bp):
CTAAATACCTTCGTTTACAATTTTTTTTAAAATTTTGGCTTTTTTATTTTTTTTTATTTTGTTTT
TGT
Found at i:1899040 original size:6 final size:6
Alignment explanation
Indices: 1899031--1899063 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
1899021 TTTTTTTTTA
1899031 TTTTGT TTTTG- TTTTGT TTTTGT TTTT-T TTTTG
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTG
1899064 AAAAAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:1899063 original size:11 final size:11
Alignment explanation
Indices: 1899015--1899063 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
1899005 AATTTTGGCT
*
1899015 TTTTTATTTT-
1 TTTTTGTTTTG
*
1899025 TTTTTATTTTG
1 TTTTTGTTTTG
1899036 TTTTTGTTTTG
1 TTTTTGTTTTG
*
1899047 TTTTTGTTTTT
1 TTTTTGTTTTG
1899058 TTTTTG
1 TTTTTG
1899064 AAAAAATAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
10 10 0.28
11 26 0.72
ACGTcount: A:0.04, C:0.00, G:0.10, T:0.86
Consensus pattern (11 bp):
TTTTTGTTTTG
Found at i:1912095 original size:80 final size:80
Alignment explanation
Indices: 1911962--1912121 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
1911952 GGTGGTATAG
1911962 ATTAGTTCGAATCTTAAGCCTCCTCGAAATCATGTATCGGTCTCTACTCAGTTCACCCGATTGAG
1 ATTAGTTCGAATCTTAAGCCTCCTCGAAATCATGTATCGGTCTCTACTCAGTTCACCCGATTGAG
1912027 AGCAATCTTTGTTTT
66 AGCAATCTTTGTTTT
1912042 ATTAGTTCGAATCTTAAGCCTCCTCGAAATCATGTATCGGTCTCTACTCAGTTCACCCGATTGAG
1 ATTAGTTCGAATCTTAAGCCTCCTCGAAATCATGTATCGGTCTCTACTCAGTTCACCCGATTGAG
1912107 AGCAATCTTTGTTTT
66 AGCAATCTTTGTTTT
1912122 CCCCAAAACT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (80 bp):
ATTAGTTCGAATCTTAAGCCTCCTCGAAATCATGTATCGGTCTCTACTCAGTTCACCCGATTGAG
AGCAATCTTTGTTTT
Found at i:1919503 original size:24 final size:24
Alignment explanation
Indices: 1919476--1919535 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
1919466 AAGAAAAATC
1919476 AGAAAAGAAAGAT-AAGCACTCAAA
1 AGAAAAGAAAGATCAA-CACTCAAA
*
1919500 AG-AAAGAAAAATCCAACACTCAAA
1 AGAAAAGAAAGAT-CAACACTCAAA
1919524 AGAAGAA-AAAGA
1 AGAA-AAGAAAGA
1919536 AAATAAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 9 0.30
24 12 0.40
25 7 0.23
26 2 0.07
ACGTcount: A:0.65, C:0.13, G:0.15, T:0.07
Consensus pattern (24 bp):
AGAAAAGAAAGATCAACACTCAAA
Found at i:1920807 original size:24 final size:24
Alignment explanation
Indices: 1920780--1920828 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
1920770 TCCTTTGACA
* *
1920780 TTCAAACAGTTATGCCACTTGAAG
1 TTCAAAAAGATATGCCACTTGAAG
* *
1920804 TTCAAAAAGATGTGTCACTTGAAG
1 TTCAAAAAGATATGCCACTTGAAG
1920828 T
1 T
1920829 GCCACAAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (24 bp):
TTCAAAAAGATATGCCACTTGAAG
Found at i:1920841 original size:24 final size:25
Alignment explanation
Indices: 1920795--1920849 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
1920785 ACAGTTATGC
*
1920795 CACTTGAAGTTCAAAAAGATGTG-T
1 CACTTGAAGTGCAAAAAGATGTGAT
* * *
1920819 CACTTGAAGTGCCACAAGTTGTGAT
1 CACTTGAAGTGCAAAAAGATGTGAT
1920844 CA-TTGA
1 CACTTGA
1920850 GGCTCCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (25 bp):
CACTTGAAGTGCAAAAAGATGTGAT
Found at i:1922621 original size:74 final size:73
Alignment explanation
Indices: 1922495--1922656 Score: 195
Period size: 74 Copynumber: 2.2 Consensus size: 73
1922485 TTAATGAATA
* *
1922495 AATATTCATGAATGTATCTTCATGGCTGAATCCTTCCTCCCATGTGTGAACATG-CTTGATTTGT
1 AATATTCATGAATGTATCTT-ATGGCTGAATCCTTCCCCCCATGTGTGAACATGAC-T-ATTTGG
*
1922559 CTTCTATGGATG
63 CTTCT-TGCATG
* * *
1922571 AATGTTCATGAATGTATC-T-TGGCTGAAATTCTTCCCCCCTTGTGTGAACATGACTATTTGGCT
1 AATATTCATGAATGTATCTTATGGCTG-AATCCTTCCCCCCATGTGTGAACATGACTATTTGGCT
1922634 TCTTGCATG
65 TCTTGCATG
*
1922643 AATATGCATGAATG
1 AATATTCATGAATG
1922657 GATGAACTTA
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
72 17 0.22
73 16 0.21
74 24 0.32
75 2 0.03
76 17 0.22
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (73 bp):
AATATTCATGAATGTATCTTATGGCTGAATCCTTCCCCCCATGTGTGAACATGACTATTTGGCTT
CTTGCATG
Found at i:1945995 original size:11 final size:11
Alignment explanation
Indices: 1945981--1946026 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
1945971 TTTTTTTTTC
1945981 AAAAAAACAAA
1 AAAAAAACAAA
1945992 AAAAAAAC-AA
1 AAAAAAACAAA
**
1946002 AAAAAAAGGAA
1 AAAAAAACAAA
1946013 AAAAAAACAAA
1 AAAAAAACAAA
1946024 AAA
1 AAA
1946027 TCCAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 9 0.29
11 22 0.71
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:1946007 original size:21 final size:21
Alignment explanation
Indices: 1945981--1946026 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
1945971 TTTTTTTTTC
1945981 AAAAAAACAAAAAAAAAACAA
1 AAAAAAACAAAAAAAAAACAA
**
1946002 AAAAAAAGGAAAAAAAAACAA
1 AAAAAAACAAAAAAAAAACAA
1946023 AAAA
1 AAAA
1946027 TCCAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (21 bp):
AAAAAAACAAAAAAAAAACAA
Found at i:1953600 original size:13 final size:13
Alignment explanation
Indices: 1953578--1953607 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1953568 ACTAAACACC
1953578 TTTC-ACATACCT
1 TTTCAACATACCT
1953590 TTTCAACATACCT
1 TTTCAACATACCT
1953603 TTTCA
1 TTTCA
1953608 TCTTTGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (13 bp):
TTTCAACATACCT
Found at i:1969874 original size:76 final size:72
Alignment explanation
Indices: 1969788--1969943 Score: 172
Period size: 74 Copynumber: 2.1 Consensus size: 72
1969778 AATAAATCTT
* ** *
1969788 CATGAATGTATCTTCATGGCTG-AATCCTTCCTCCCATGTATGAACATGTTTGATTTGTCTTCTA
1 CATGAATGTATC-T--TGGCTGAAATCCTTCCTCCCATGTATAAACATGACT-ATTTGGCTTCT-
*
1969852 TGGATGAATATTG
61 TGCATGAATA-TG
* * *
1969865 -ATGAATGTATCTTGGCTGAAATTCTTCCTCCCTTGTGTAAACATGACTATTTGGCTTCTTGCAT
1 CATGAATGTATCTTGGCTGAAATCCTTCCTCCCATGTATAAACATGACTATTTGGCTTCTTGCAT
1969929 GAATATG
66 GAATATG
1969936 CATGAATG
1 CATGAATG
1969944 GATGAACTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
71 2 0.03
72 16 0.23
73 16 0.23
74 23 0.33
75 1 0.01
76 11 0.16
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (72 bp):
CATGAATGTATCTTGGCTGAAATCCTTCCTCCCATGTATAAACATGACTATTTGGCTTCTTGCAT
GAATATG
Found at i:1972289 original size:22 final size:23
Alignment explanation
Indices: 1972237--1972290 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
1972227 TCTCCAAACA
*
1972237 TTCTTCATTTGCATTGTCTTTAAG
1 TTCTTC-TTTGCATTGTCTTCAAG
*
1972261 TTGTTCTTT-CATTG-CTTCAATG
1 TTCTTCTTTGCATTGTCTTCAA-G
1972283 TTCTTCTT
1 TTCTTCTT
1972291 CAGGGTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 5 0.19
22 13 0.50
23 3 0.12
24 5 0.19
ACGTcount: A:0.13, C:0.19, G:0.11, T:0.57
Consensus pattern (23 bp):
TTCTTCTTTGCATTGTCTTCAAG
Found at i:1973287 original size:27 final size:28
Alignment explanation
Indices: 1973256--1973321 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
1973246 CTTGTCTTGC
*
1973256 TTTCTCTTTT-TGAATTTTTTCTT-TTCT
1 TTTCTCTTTTCAGAATTTTTTCTTCTT-T
1973283 TTTCTTCTTTTCAGAATTTTTTCTTCTTT
1 TTTC-TCTTTTCAGAATTTTTTCTTCTTT
1973312 TTGTCTCTTT
1 TT-TCTCTTT
1973322 CTTTCTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 4 0.12
28 6 0.18
29 20 0.59
30 4 0.12
ACGTcount: A:0.08, C:0.17, G:0.05, T:0.71
Consensus pattern (28 bp):
TTTCTCTTTTCAGAATTTTTTCTTCTTT
Found at i:1977361 original size:29 final size:29
Alignment explanation
Indices: 1977297--1977358 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
1977287 GCTTTCTTTC
*
1977297 TCTTTT-TGAATTTTTTATTTTCTTTTAT
1 TCTTTTCTGAATTTTTTATCTTCTTTTAT
1977325 TCTTTTCTGAATTTTTT-TCTTCTTTT-T
1 TCTTTTCTGAATTTTTTATCTTCTTTTAT
1977352 GTCTTTT
1 -TCTTTT
1977359 TCTTTCTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 1 0.03
28 20 0.65
29 10 0.32
ACGTcount: A:0.10, C:0.11, G:0.05, T:0.74
Consensus pattern (29 bp):
TCTTTTCTGAATTTTTTATCTTCTTTTAT
Found at i:1984279 original size:20 final size:21
Alignment explanation
Indices: 1984242--1984280 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1984232 GATGGTCTTG
*
1984242 ATGAAGGATGTTGATGATGGA
1 ATGAAGGATGGTGATGATGGA
*
1984263 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
1984281 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.31, C:0.00, G:0.41, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGGA
Found at i:1988187 original size:20 final size:20
Alignment explanation
Indices: 1988162--1988227 Score: 64
Period size: 20 Copynumber: 3.1 Consensus size: 20
1988152 TCTTTTTGAA
1988162 TTTCTTTTTTCTTTTCTTCT
1 TTTCTTTTTTCTTTTCTTCT
*
1988182 TTTC-TTTTTCTGAATT-TTCT
1 TTTCTTTTTTCT--TTTCTTCT
1988202 TCTTCTTTTTGTCTTTTCTTTCT
1 T-TTCTTTTT-TCTTTTC-TTCT
1988225 TTT
1 TTT
1988228 TGTACTCCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
19 7 0.19
20 9 0.24
21 7 0.19
22 6 0.16
23 8 0.22
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTCTTTTTTCTTTTCTTCT
Found at i:1988208 original size:34 final size:33
Alignment explanation
Indices: 1988150--1988222 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 33
1988140 CTTGGCTTGC
*
1988150 TTTC-TTTTTGAATTTCTTTTTTCTTTTCT-TCT
1 TTTCTTTTTTGAATTTCTTTCTTCTTTT-TGTCT
1988182 TTTCTTTTTCTGAATTT-TCTTCTTCTTTTTGTCT
1 TTTCTTTTT-TGAATTTCT-TTCTTCTTTTTGTCT
1988216 TTTCTTT
1 TTTCTTT
1988223 CTTTTTGTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 4 0.11
33 6 0.17
34 26 0.72
ACGTcount: A:0.05, C:0.16, G:0.04, T:0.74
Consensus pattern (33 bp):
TTTCTTTTTTGAATTTCTTTCTTCTTTTTGTCT
Found at i:1995669 original size:22 final size:21
Alignment explanation
Indices: 1995643--1995683 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
1995633 GTTGCAGAAT
1995643 TGATGGTCTTGATGGATGAAGA
1 TGATGGTCTTGAT-GATGAAGA
*
1995665 TGATGGTGTTGATGATGAA
1 TGATGGTCTTGATGATGAA
1995684 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.34
Consensus pattern (21 bp):
TGATGGTCTTGATGATGAAGA
Found at i:1999466 original size:28 final size:27
Alignment explanation
Indices: 1999411--1999476 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 27
1999401 CTTGGCTTGC
*
1999411 TTTC-TCTTTTTGAATTTTTTCTTTTCT
1 TTTCTTCTTTTTGAATTTTTTC-TATCT
1999438 TTTCTTCTTTTCTGAATTTGTTTC-ATCT
1 TTTCTTCTTTT-TGAATTT-TTTCTATCT
1999466 TTT-TGTCTTTT
1 TTTCT-TCTTTT
1999477 ACTTTCTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
27 5 0.15
28 18 0.53
29 7 0.21
30 4 0.12
ACGTcount: A:0.08, C:0.15, G:0.06, T:0.71
Consensus pattern (27 bp):
TTTCTTCTTTTTGAATTTTTTCTATCT
Found at i:1999832 original size:22 final size:21
Alignment explanation
Indices: 1999806--1999846 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
1999796 GTTGCAGAAT
1999806 TGATGGTCTTGATGGATGAAGA
1 TGATGGTCTTGAT-GATGAAGA
*
1999828 TGATGGTGTTGATGATGAA
1 TGATGGTCTTGATGATGAA
1999847 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.34
Consensus pattern (21 bp):
TGATGGTCTTGATGATGAAGA
Found at i:2003629 original size:28 final size:27
Alignment explanation
Indices: 2003574--2003639 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 27
2003564 CTTGGCTTGC
*
2003574 TTTC-TCTTTTTGAATTTTTTCTTTTCT
1 TTTCTTCTTTTTGAATTTTTTC-TATCT
2003601 TTTCTTCTTTTCTGAATTTGTTTC-ATCT
1 TTTCTTCTTTT-TGAATTT-TTTCTATCT
2003629 TTT-TGTCTTTT
1 TTTCT-TCTTTT
2003640 ACTTTCTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
27 5 0.15
28 18 0.53
29 7 0.21
30 4 0.12
ACGTcount: A:0.08, C:0.15, G:0.06, T:0.71
Consensus pattern (27 bp):
TTTCTTCTTTTTGAATTTTTTCTATCT
Found at i:2003995 original size:22 final size:21
Alignment explanation
Indices: 2003969--2004009 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
2003959 GTTGCAGAAT
2003969 TGATGGTCTTGATGGATGAAGA
1 TGATGGTCTTGAT-GATGAAGA
*
2003991 TGATGGTGTTGATGATGAA
1 TGATGGTCTTGATGATGAA
2004010 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.27, C:0.02, G:0.37, T:0.34
Consensus pattern (21 bp):
TGATGGTCTTGATGATGAAGA
Found at i:2007808 original size:29 final size:29
Alignment explanation
Indices: 2007744--2007805 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
2007734 GCTTGCTTTC
*
2007744 TCTTTT-TGAATTTTTTCTTTTCTTTTAT
1 TCTTTTCTGAATTTTTTCTCTTCTTTTAT
2007772 TCTTTTCTGAATTTTTT-TCTTCTTTT-T
1 TCTTTTCTGAATTTTTTCTCTTCTTTTAT
2007799 GTCTTTT
1 -TCTTTT
2007806 TCTTTCTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 1 0.03
28 20 0.65
29 10 0.32
ACGTcount: A:0.08, C:0.13, G:0.05, T:0.74
Consensus pattern (29 bp):
TCTTTTCTGAATTTTTTCTCTTCTTTTAT
Found at i:2009586 original size:21 final size:20
Alignment explanation
Indices: 2009552--2009590 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
2009542 GTATGCTCAT
*
2009552 AATAATATATATAATATATA
1 AATAATAAATATAATATATA
2009572 AATAAGTAAATATAATATA
1 AATAA-TAAATATAATATA
2009591 AAGTAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
AATAATAAATATAATATATA
Found at i:2009594 original size:16 final size:17
Alignment explanation
Indices: 2009553--2009596 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
2009543 TATGCTCATA
*
2009553 ATAATATATA-TAATAT
1 ATAATATAAAGTAATAT
2009569 ATAA-AT-AAGTAA-AT
1 ATAATATAAAGTAATAT
2009583 ATAATATAAAGTAA
1 ATAATATAAAGTAA
2009597 GGAAGAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
14 7 0.29
15 7 0.29
16 10 0.42
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
ATAATATAAAGTAATAT
Found at i:2012229 original size:19 final size:19
Alignment explanation
Indices: 2012167--2012230 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
2012157 TTGGCAACTC
2012167 AGCTGCCTTGTACTTTGTG
1 AGCTGCCTTGTACTTTGTG
* * **
2012186 AGCTTTCCTTAGT-GTTCCATG
1 AGC-TGCCTT-GTACTT-TGTG
2012207 AGCTGCCTTGTACTTTGTG
1 AGCTGCCTTGTACTTTGTG
2012226 AGCTG
1 AGCTG
2012231 TTTGTGAGCT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 12 0.36
20 14 0.42
21 7 0.21
ACGTcount: A:0.12, C:0.22, G:0.25, T:0.41
Consensus pattern (19 bp):
AGCTGCCTTGTACTTTGTG
Found at i:2017781 original size:21 final size:21
Alignment explanation
Indices: 2017742--2017781 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2017732 AAGGAAGATT
*
2017742 AATGAAATGATAAAGATAAGG
1 AATGAAATGATAAAAATAAGG
2017763 AATGAAATGA-AATAAATAA
1 AATGAAATGATAA-AAATAA
2017782 AGGATATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.20
Consensus pattern (21 bp):
AATGAAATGATAAAAATAAGG
Found at i:2017830 original size:22 final size:21
Alignment explanation
Indices: 2017804--2017844 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
2017794 GTTGCAGAAT
2017804 TGATGGTCTTGATGGATGAAGG
1 TGATGGTCTTGAT-GATGAAGG
*
2017826 TGATGGTGTTGATGATGAA
1 TGATGGTCTTGATGATGAA
2017845 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.02, G:0.39, T:0.34
Consensus pattern (21 bp):
TGATGGTCTTGATGATGAAGG
Found at i:2018186 original size:20 final size:20
Alignment explanation
Indices: 2018161--2018198 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2018151 GCTGGCCAAA
* *
2018161 TAAATAGATGTCTATTTGTC
1 TAAATACATGACTATTTGTC
2018181 TAAATACATGACTATTTG
1 TAAATACATGACTATTTG
2018199 AAGGTGTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
TAAATACATGACTATTTGTC
Found at i:2024523 original size:24 final size:24
Alignment explanation
Indices: 2024471--2024523 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
2024461 CTTTTATTTT
*
2024471 CTTTTCTTCTTTTTGAGTGTTGGA
1 CTTTTCTTCTTTTGGAGTGTTGGA
*
2024495 GTTTTCTTCTTTTGGAGTGCTT-GA
1 CTTTTCTTCTTTTGGAGTG-TTGGA
2024519 CTTTT
1 CTTTT
2024524 ATTTGCTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.08, C:0.13, G:0.21, T:0.58
Consensus pattern (24 bp):
CTTTTCTTCTTTTGGAGTGTTGGA
Found at i:2029712 original size:20 final size:20
Alignment explanation
Indices: 2029687--2029734 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
2029677 ATTCGGCTAG
*
2029687 ATACATG-ACTTTTAATGGAA
1 ATACATGTA-TTTTAATGAAA
2029707 ATACATGTTATTTTAATGAAA
1 ATACATG-TATTTTAATGAAA
2029728 ATACATG
1 ATACATG
2029735 CTCTTGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 7 0.28
21 17 0.68
22 1 0.04
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (20 bp):
ATACATGTATTTTAATGAAA
Found at i:2030578 original size:17 final size:19
Alignment explanation
Indices: 2030542--2030579 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
2030532 AACTATATAA
2030542 TGCATATAATATAATGATG
1 TGCATATAATATAATGATG
*
2030561 TGCATATTATA-AAT-ATG
1 TGCATATAATATAATGATG
2030578 TG
1 TG
2030580 AACTATAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (19 bp):
TGCATATAATATAATGATG
Found at i:2033067 original size:19 final size:19
Alignment explanation
Indices: 2033029--2033064 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
2033019 GCTACAACAA
*
2033029 AAAAAAAGCAACAAGAAAG
1 AAAAAAAGCAAAAAGAAAG
2033048 AAAAAAAG-AAAAAGAAA
1 AAAAAAAGCAAAAAGAAA
2033065 AGACTCCTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAAAGCAAAAAGAAAG
Found at i:2033299 original size:16 final size:15
Alignment explanation
Indices: 2033266--2033317 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
2033256 GTAAGTTATC
2033266 TTCATTTTTTATCAT
1 TTCATTTTTTATCAT
2033281 TTCATTTCTTTATTC-T
1 TTCATTT-TTTA-TCAT
* * *
2033297 TTCATCTTTTCTTAT
1 TTCATTTTTTATCAT
2033312 TTCATT
1 TTCATT
2033318 ACCATATCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
16 11 0.37
17 2 0.07
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCATTTTTTATCAT
Found at i:2043321 original size:2 final size:2
Alignment explanation
Indices: 2043314--2043361 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
2043304 TGGAAGAGGA
2043314 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2043356 AT AT AT
1 AT AT AT
2043362 GTTGGTAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2045815 original size:25 final size:25
Alignment explanation
Indices: 2045783--2045838 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
2045773 AAAAATCAGA
* *
2045783 AAAG-AAATTGAAGCACACCAAAAG
1 AAAGAAAATTCAAGCACACAAAAAG
* *
2045807 AAAGAAAATTCCAGCACTCAAAAAG
1 AAAGAAAATTCAAGCACACAAAAAG
2045832 -AAGAAAA
1 AAAGAAAA
2045839 AAAAACAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.61, C:0.16, G:0.14, T:0.09
Consensus pattern (25 bp):
AAAGAAAATTCAAGCACACAAAAAG
Found at i:2048338 original size:24 final size:21
Alignment explanation
Indices: 2048304--2048346 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
2048294 TCCACAAGAC
*
2048304 ATGTCCTTTGACATTTCAAAGG
1 ATGTCCTTTGA-AATTCAAAGG
2048326 ATGTACCTCTTGAAATTCAAA
1 ATGT-CCT-TTGAAATTCAAA
2048347 AGAATGTGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 10 0.56
24 4 0.22
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
ATGTCCTTTGAAATTCAAAGG
Found at i:2049282 original size:42 final size:42
Alignment explanation
Indices: 2049205--2049287 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
2049195 TGTAAATTAT
* **
2049205 CATATCATTCATACCATCCTATGTTTAGTTCATCATGTTTTC
1 CATATCATTCATACCATCCTATGATTACATCATCATGTTTTC
* * *
2049247 CATATCATTCATATCTATGCTATGATTACAT-ATCATTTTTT
1 CATATCATTCATA-CCATCCTATGATTACATCATCATGTTTT
2049288 GAGATATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 22 0.65
43 12 0.35
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (42 bp):
CATATCATTCATACCATCCTATGATTACATCATCATGTTTTC
Found at i:2050091 original size:20 final size:21
Alignment explanation
Indices: 2050066--2050108 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
2050056 ACCAAAAAAT
2050066 TTCAAGAAGAC-CCATGTGCA
1 TTCAAGAAGACTCCATGTGCA
*
2050086 TTCAAGAAGGCTTCCATGTGCA
1 TTCAAGAAGAC-TCCATGTGCA
2050108 T
1 T
2050109 CATTCAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (21 bp):
TTCAAGAAGACTCCATGTGCA
Found at i:2052402 original size:19 final size:19
Alignment explanation
Indices: 2052349--2052404 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 19
2052339 GTGCAAAAAG
2052349 AAAGAAAAAGACAAAAGAAGA
1 AAAG-AAAAGA-AAAAGAAGA
2052370 AAA-AAATCAG-AAAAGAAGA
1 AAAGAAA--AGAAAAAGAAGA
2052389 AAAGAAAAGAAAAAGA
1 AAAGAAAAGAAAAAGA
2052405 GTAGTTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
18 2 0.06
19 21 0.68
20 3 0.10
21 5 0.16
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (19 bp):
AAAGAAAAGAAAAAGAAGA
Found at i:2072793 original size:10 final size:10
Alignment explanation
Indices: 2072780--2072804 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2072770 CAATTTTTAA
2072780 TTTTTTTTCT
1 TTTTTTTTCT
2072790 TTTTTTTTCT
1 TTTTTTTTCT
2072800 TTTTT
1 TTTTT
2072805 GCTTATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:2074997 original size:15 final size:16
Alignment explanation
Indices: 2074954--2074999 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
2074944 TTTGAAATAA
*
2074954 GAAATGGAAGAAGAATG
1 GAAATGG-AGAAGAAAG
*
2074971 GAAAT-GATAAGAAAG
1 GAAATGGAGAAGAAAG
2074986 GAAATGGA-AAGAAA
1 GAAATGGAGAAGAAA
2075000 TGATATCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 18 0.69
16 3 0.12
17 5 0.19
ACGTcount: A:0.59, C:0.00, G:0.30, T:0.11
Consensus pattern (16 bp):
GAAATGGAGAAGAAAG
Found at i:2075543 original size:20 final size:21
Alignment explanation
Indices: 2075501--2075544 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
2075491 ATTCGGCTAG
** *
2075501 ATACATGTCTTTTTAATGGAA
1 ATACATGTCTTTAAAATGAAA
2075522 ATACATGTC-TTAAAATGAAA
1 ATACATGTCTTTAAAATGAAA
2075542 ATA
1 ATA
2075545 GATGATGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (21 bp):
ATACATGTCTTTAAAATGAAA
Found at i:2078764 original size:17 final size:17
Alignment explanation
Indices: 2078742--2078783 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
2078732 CGTCTATTGA
2078742 TTCTTCAAAATACAAGT
1 TTCTTCAAAATACAAGT
2078759 TTCTTCAAAATACAAGT
1 TTCTTCAAAATACAAGT
2078776 TTCTTCAA
1 TTCTTCAA
2078784 TCTATAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (17 bp):
TTCTTCAAAATACAAGT
Found at i:2080009 original size:15 final size:15
Alignment explanation
Indices: 2079974--2080002 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2079964 GTGCTTCAAC
2079974 TTCTTT-CTTTTCTT
1 TTCTTTGCTTTTCTT
2079988 TTCTTTGCTTTTCTT
1 TTCTTTGCTTTTCTT
2080003 CTTTTTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTGCTTTTCTT
Found at i:2091416 original size:25 final size:25
Alignment explanation
Indices: 2091395--2091446 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
2091385 ATCAGAAAAT
* *
2091395 AAATTGAAGTACTCCAAAAGAAAGA
1 AAATTCAAGTACTCAAAAAGAAAGA
*
2091420 AAATTCCAGTACTCAAAAAG-AAGA
1 AAATTCAAGTACTCAAAAAGAAAGA
2091444 AAA
1 AAA
2091447 AAACTAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.15
Consensus pattern (25 bp):
AAATTCAAGTACTCAAAAAGAAAGA
Found at i:2100567 original size:24 final size:24
Alignment explanation
Indices: 2100539--2100586 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2100529 GCCTTAATGA
*
2100539 TCACAACTTGTGGCACTTCAAGTG
1 TCACAACTTGTGGAACTTCAAGTG
* * *
2100563 TCACATCTTTTTGAACTTCAAGTG
1 TCACAACTTGTGGAACTTCAAGTG
2100587 GCATAACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (24 bp):
TCACAACTTGTGGAACTTCAAGTG
Found at i:2103852 original size:24 final size:25
Alignment explanation
Indices: 2103806--2103860 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
2103796 ACAGTTATGC
*
2103806 CACTTGATGTTCAAAAAGATGTG-T
1 CACTTGAAGTTCAAAAAGATGTGAT
* * *
2103830 CACTTGAAGTTCCACAAGTTGTGAT
1 CACTTGAAGTTCAAAAAGATGTGAT
2103855 CA-TTGA
1 CACTTGA
2103861 GGCTGCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (25 bp):
CACTTGAAGTTCAAAAAGATGTGAT
Found at i:2113100 original size:19 final size:19
Alignment explanation
Indices: 2113074--2113134 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 19
2113064 TCTTTTTGAA
2113074 TTTT-TTCTTTTTCTTTTC
1 TTTTCTTCTTTTTCTTTTC
2113092 TTTTCTTC-TTTTCTGATTT-
1 TTTTCTTCTTTTTCT--TTTC
*
2113111 TTCTCTTCTTTTCTCTTTTTC
1 TTTTCTTCTTTT-TC-TTTTC
2113132 TTT
1 TTT
2113135 CTTTTTGCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
18 10 0.29
19 10 0.29
20 9 0.26
21 4 0.12
22 1 0.03
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTCTTCTTTTTCTTTTC
Found at i:2113139 original size:27 final size:27
Alignment explanation
Indices: 2113077--2113139 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
2113067 TTTTGAATTT
*
2113077 TTTCTTTTTCTTTTCTTTTCTTCTTTTC
1 TTTC-TTTTCTCTTCTTTTCTTCTTTTC
*
2113105 TGAT-TTTTCTCTTCTTTTC-TCTTTTTC
1 T-TTCTTTTCTCTTCTTTTCTTC-TTTTC
2113132 TTTCTTTT
1 TTTCTTTT
2113140 TGCACTTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
26 3 0.10
27 24 0.83
28 1 0.03
29 1 0.03
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.76
Consensus pattern (27 bp):
TTTCTTTTCTCTTCTTTTCTTCTTTTC
Found at i:2120433 original size:3 final size:3
Alignment explanation
Indices: 2120425--2120452 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
2120415 TTCAAATATG
2120425 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
2120453 GTTTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:2129225 original size:15 final size:15
Alignment explanation
Indices: 2129190--2129218 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2129180 GTGCTTCAAC
2129190 TTCTTT-CTTTTCTT
1 TTCTTTGCTTTTCTT
2129204 TTCTTTGCTTTTCTT
1 TTCTTTGCTTTTCTT
2129219 CTTTTTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (15 bp):
TTCTTTGCTTTTCTT
Found at i:2140627 original size:25 final size:25
Alignment explanation
Indices: 2140606--2140657 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
2140596 ATTAGAAAAT
* *
2140606 AAATTGAAGTACTCCAAAAGAAAGA
1 AAATTCAAGTACTCAAAAAGAAAGA
*
2140631 AAATTCCAGTACTCAAAAAG-AAGA
1 AAATTCAAGTACTCAAAAAGAAAGA
2140655 AAA
1 AAA
2140658 AAACTAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.58, C:0.13, G:0.13, T:0.15
Consensus pattern (25 bp):
AAATTCAAGTACTCAAAAAGAAAGA
Found at i:2149840 original size:24 final size:24
Alignment explanation
Indices: 2149812--2149859 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2149802 GCCTTAATGA
*
2149812 TCACAACTTGTGGCACTTCAAGTG
1 TCACAACTTGTGGAACTTCAAGTG
* * *
2149836 TCACATCTTTTTGAACTTCAAGTG
1 TCACAACTTGTGGAACTTCAAGTG
2149860 GCATAACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (24 bp):
TCACAACTTGTGGAACTTCAAGTG
Found at i:2153266 original size:24 final size:25
Alignment explanation
Indices: 2153220--2153274 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
2153210 ACAGTTATGC
*
2153220 CACTTGATGTTCAAAAAGATGTG-T
1 CACTTGAAGTTCAAAAAGATGTGAT
* * *
2153244 CACTTGAAGTTCCACAAGTTGTGAT
1 CACTTGAAGTTCAAAAAGATGTGAT
2153269 CA-TTGA
1 CACTTGA
2153275 GGCTGCAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (25 bp):
CACTTGAAGTTCAAAAAGATGTGAT
Found at i:2192873 original size:46 final size:46
Alignment explanation
Indices: 2192796--2193280 Score: 652
Period size: 46 Copynumber: 10.4 Consensus size: 46
2192786 GTTAATATAT
* * *
2192796 CGTTATGCATTTTCATTTATGGCATCATTTCATGTTGATCATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
* *
2192842 CGTTATGCATTTTCATTTATGACATCTTTTCATGCTGATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
* *
2192888 CATTATGCATTTTCATTTATGTCATCCTTTCATG-TAGATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCT-GATAATGCAC
* ** *
2192934 CGTTATGCATTTTCATTTATGGCACCCTTTCATGCCAATAATGAAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
* * * *
2192980 TGTTATGAATTTTCATTTATGGCATCATTTCATGCCGATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
*
2193026 C-TTATGCATTTTCTTTTTCATTTATGGCATCTTTTCATGCTGATAATGCAC
1 CGTTATGCA------TTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
**
2193077 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCCCATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
*
2193123 CGTTATGCATTTTCATTTATGGCTTCCTTTCATGCTGATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
* *
2193169 CGTTATGCATTTTCATTTATGGCATCCTTTAATGCCT-ATAATGCGC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATG-CTGATAATGCAC
** *
2193215 CGTTATTAATTTTCATTTATGGCATCCTTTCATGCCGATAATGCAC
1 CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
*
2193261 TGTTATGCATTTTCATTTAT
1 CGTTATGCATTTTCATTTAT
2193281 TCATTCATTT
Statistics
Matches: 388, Mismatches: 40, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
45 8 0.02
46 335 0.86
47 2 0.01
51 36 0.09
52 7 0.02
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (46 bp):
CGTTATGCATTTTCATTTATGGCATCCTTTCATGCTGATAATGCAC
Found at i:2193228 original size:235 final size:237
Alignment explanation
Indices: 2192805--2193285 Score: 752
Period size: 235 Copynumber: 2.0 Consensus size: 237
2192795 TCGTTATGCA
* * *
2192805 TTTTCATTTATGGCATCATTTCATGTTGATCATGCACCGTTATGCATTTTCATTTATGACATCTT
1 TTTTCATTTATGGCATCATTTCATGCTGATAATGCACCGTTATGCATTTTCATTTATGACATCCT
** *
2192870 TTCATGCTGATAATGCACCATTATGCATTTTCATTTATGTCATCCTTTCATGTAGATAATGCACC
66 TTCATGCCCATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGTAGATAATGCACC
* *
2192935 GTTATGCATTTTCATTTATGGCACCCTTTCATGCCAATAATGAACTGTTATGAATTTTCATTTAT
131 GTTATGCATTTTCATTTATGGCACCCTTTAATGCCAATAATGAACCGTTATGAATTTTCATTTAT
2193000 GGCATCATTTCATGCCGATAATGCAC-CTTATGCATTTTC-T
196 GGCATCATTTCATGCCGATAATGCACTCTTATGCATTTTCAT
* *
2193040 TTTTCATTTATGGCATCTTTTCATGCTGATAATGCACCGTTATGCATTTTCATTTATGGCATCCT
1 TTTTCATTTATGGCATCATTTCATGCTGATAATGCACCGTTATGCATTTTCATTTATGACATCCT
* *
2193105 TTCATGCCCATAATGCACCGTTATGCATTTTCATTTATGGCTTCCTTTCATGCT-GATAATGCAC
66 TTCATGCCCATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATG-TAGATAATGCAC
* * ** *
2193169 CGTTATGCATTTTCATTTATGGCATCCTTTAATGCCTATAATGCGCCGTTATTAATTTTCATTTA
130 CGTTATGCATTTTCATTTATGGCACCCTTTAATGCCAATAATGAACCGTTATGAATTTTCATTTA
* *
2193234 TGGCATCCTTTCATGCCGATAATGCACTGTTATGCATTTTCAT
195 TGGCATCATTTCATGCCGATAATGCACTCTTATGCATTTTCAT
2193277 TTATTCATT
1 TT-TTCATT
2193286 CATTTTAGAG
Statistics
Matches: 223, Mismatches: 19, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
235 201 0.90
236 13 0.06
237 3 0.01
238 6 0.03
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (237 bp):
TTTTCATTTATGGCATCATTTCATGCTGATAATGCACCGTTATGCATTTTCATTTATGACATCCT
TTCATGCCCATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGTAGATAATGCACC
GTTATGCATTTTCATTTATGGCACCCTTTAATGCCAATAATGAACCGTTATGAATTTTCATTTAT
GGCATCATTTCATGCCGATAATGCACTCTTATGCATTTTCAT
Found at i:2199021 original size:46 final size:46
Alignment explanation
Indices: 2198968--2199490 Score: 674
Period size: 46 Copynumber: 11.4 Consensus size: 46
2198958 TTAATATACT
* * * *
2198968 GTTATGCATTTTTC-TTTGTGGCATCCTTTTATGCCAATTATGCACC
1 GTTATGCA-TTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * *
2199014 ATTATGCATTTTCATTTATGCCATCCTTTCATGCCGATAATGCACT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * *
2199060 GTTATGCATTTTCATTTATAGCATCCTTTTATGTCGATAATGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
** ** * *
2199106 GTTATGCATTTTGGTTTATGGCATTTTTTCATGTCGAT-GTGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* *
2199151 GTTATGCATTTTCATTTATGGCATCCGTTCATGTCGATAATGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* *
2199197 ATTATGCATTTTCATTTATGGTATCCTTTCATGCCGATAATGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* *
2199243 GTTATGAATTTTCATTTATGGCATCCTTTCATGCCGATATTGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * * ** *
2199289 GGTATGCATTTTCATTTAT-TCATCCATTCATGTTGATAATGCAAC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * *
2199334 ATTATACACTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * *
2199380 ATTATGCATTTTCATTTATGGCATCCATTCATGTCGATAATGCACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
* * * *
2199426 ATTATGAATTTTCATTTATGGCATCCTTTGATGCCGATAATACACC
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
2199472 GTTATGCATTTTCATTTAT
1 GTTATGCATTTTCATTTAT
2199491 TCATTCATTA
Statistics
Matches: 412, Mismatches: 62, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
45 79 0.19
46 333 0.81
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (46 bp):
GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACC
Found at i:2199189 original size:137 final size:138
Alignment explanation
Indices: 2198968--2199490 Score: 674
Period size: 137 Copynumber: 3.8 Consensus size: 138
2198958 TTAATATACT
* * * * *
2198968 GTTATGCATTTTTC-TTTGTGGCATCCTTTTATGCCAATTATGCACCATTATGCATTTTCATTTA
1 GTTATGCA-TTTTCATTTATGGCATCCTTTCATGTCGATAATGCACCATTATGCATTTTCATTTA
* ** * * *
2199032 TGCCATCCTTTCATGCCGATAATGCACTGTTATGCATTTTCATTTATAGCATCCTTTTATGTCGA
65 TGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGCCGA
2199097 TAATGCACC
130 TAATGCACC
** ** * *
2199106 GTTATGCATTTTGGTTTATGGCATTTTTTCATGTCGAT-GTGCACCGTTATGCATTTTCATTTAT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGTCGATAATGCACCATTATGCATTTTCATTTAT
* * *
2199170 GGCATCCGTTCATGTCGATAATGCACCATTATGCATTTTCATTTATGGTATCCTTTCATGCCGAT
66 GGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGCCGAT
2199235 AATGCACC
131 AATGCACC
* * * **
2199243 GTTATGAATTTTCATTTATGGCATCCTTTCATGCCGATATTGCACCGGTATGCATTTTCATTTAT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGTCGATAATGCACCATTATGCATTTTCATTTAT
* * ** * * *
2199308 -TCATCCATTCATGTTGATAATGCAACATTATACACTTTCATTTATGGCATCCTTTCATGCCGAT
66 GGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGCCGAT
2199372 AATGCACC
131 AATGCACC
* * *
2199380 ATTATGCATTTTCATTTATGGCATCCATTCATGTCGATAATGCACCATTATGAATTTTCATTTAT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGTCGATAATGCACCATTATGCATTTTCATTTAT
* * *
2199445 GGCATCCTTTGATGCCGATAATACACCGTTATGCATTTTCATTTAT
66 GGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTAT
2199491 TCATTCATTA
Statistics
Matches: 331, Mismatches: 51, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
137 246 0.74
138 85 0.26
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (138 bp):
GTTATGCATTTTCATTTATGGCATCCTTTCATGTCGATAATGCACCATTATGCATTTTCATTTAT
GGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTATGGCATCCTTTCATGCCGAT
AATGCACC
Found at i:2199289 original size:183 final size:183
Alignment explanation
Indices: 2198968--2199499 Score: 726
Period size: 183 Copynumber: 2.9 Consensus size: 183
2198958 TTAATATACT
* * * *
2198968 GTTATGCATTTTTC-TTTGTGGCATCCTTTTATGCCAATTATGCACCATTATGCATTTTCATTTA
1 GTTATGCA-TTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTA
* * * * * *
2199032 TGCCATCCTTTCATGCCGATAATGCACTGTTATGCATTTTCATTTATAGCATCCTTTTATGTCGA
65 TGGCATCCTTTCATGCCGATAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGA
** *** * *
2199097 TAATGCACCGTTATGCATTTTGGTTTATGGCATTTTTTCATGTCGAT-GTGCACC
130 TAATGCACCGTTATGCATTTTCATTTAT-GCATCCATTCATGTCGATAATGCAAC
* *
2199151 GTTATGCATTTTCATTTATGGCATCCGTTCATGTCGATAATGCACCATTATGCATTTTCATTTAT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTAT
*
2199216 GGTATCCTTTCATGCCGATAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGAT
66 GGCATCCTTTCATGCCGATAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGAT
* * * *
2199281 ATTGCACCGGTATGCATTTTCATTTATTCATCCATTCATGTTGATAATGCAAC
131 AATGCACCGTTATGCATTTTCATTTATGCATCCATTCATGTCGATAATGCAAC
* * *
2199334 ATTATACACTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTAT
1 GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTAT
* * * *
2199399 GGCATCCATTCATGTCGATAATGCACCATTATGAATTTTCATTTATGGCATCCTTTGATGCCGAT
66 GGCATCCTTTCATGCCGATAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGAT
* * *
2199464 AATACACCGTTATGCATTTTCATTTATTCATTCATT
131 AATGCACCGTTATGCATTTTCATTTATGCATCCATT
2199500 ATAGAGCAGT
Statistics
Matches: 309, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
182 18 0.06
183 291 0.94
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (183 bp):
GTTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCATTATGCATTTTCATTTAT
GGCATCCTTTCATGCCGATAATGCACCGTTATGAATTTTCATTTATGGCATCCTTTCATGCCGAT
AATGCACCGTTATGCATTTTCATTTATGCATCCATTCATGTCGATAATGCAAC
Found at i:2203114 original size:827 final size:827
Alignment explanation
Indices: 2201519--2204007 Score: 4933
Period size: 827 Copynumber: 3.0 Consensus size: 827
2201509 TCAAACCTAG
*
2201519 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTATTATATGATT
1 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
2201584 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
66 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
2201649 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
131 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
2201714 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
196 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
2201779 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
261 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
2201844 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
326 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
2201909 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
391 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
2201974 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
456 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
2202039 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
521 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
*
2202104 AAATTTACACTTGACCCTCACATATGGATTTCCTGAAATAGTTTTCATCAATTAAACAATGAATA
586 AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
2202169 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
651 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
2202234 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
716 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
2202299 CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
781 CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
2202346 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
1 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
2202411 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
66 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
2202476 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
131 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
2202541 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
196 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
*
2202606 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATTAGTAATCCTC
261 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
2202671 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
326 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
2202736 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
391 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
*
2202801 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTTAACTAGT
456 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
2202866 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
521 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
2202931 AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
586 AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
2202996 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
651 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
2203061 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
716 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
*
2203126 CATAAGTACACATCTGATCAATGGCTTCAAGCACTTGTACAATGTTA
781 CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
2203173 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
1 TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
2203238 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
66 CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
2203303 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
131 TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
2203368 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
196 ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
2203433 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
261 CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
2203498 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
326 ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
2203563 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
391 AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
2203628 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
456 TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
2203693 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
521 TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
2203758 AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
586 AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
2203823 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
651 GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
2203888 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
716 TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
2203953 CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
781 CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
2204000 TATAGCTT
1 TATAGCTT
2204008 ATCAAGGACA
Statistics
Matches: 1654, Mismatches: 8, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
827 1654 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (827 bp):
TATAGCTTGAAGCAAGATAGATTGTCCCACCTCTAATGAATATTCCTTAGACTTTTTATATGATT
CGTCTTTAGTAAGTCTCTCATCTTTCTTAGTGTGAAAAAACTCATTGTGGAAAAATTTTATGTGC
TCTTCCGTATGAAAAAAATTGCCATGGCTAAAATTTTGATGCTATTCTAGTTGTAAAAATTTACC
ACGGCTAAAAATTTCAGCTCCAGCTTCCACTGTTGAATCAATGTCTTCAATGCATTGGCTTTTTT
CAAAATCATCAATATATTTAAGAGTAATTAAGACATTAATTATGACACTCTGATCAGTAATCCTC
ATTTTGAACTCTCCCTTCTCACAGTATATTTAGTTGCGCCTATTGGCCAAGAAGAGACGCCCAAG
AATAATACGTGCATTGTCATCGCCATCGCAGTCTACAATGAGGAAGTCTACTGGAAACACGAGCT
TCTCCACCTTTACTATGAATTATTCTATTATGCCCTCGAGAAAAACGTATGATTGGTCAACTAGT
TGCAAGATCACAGTGGTTGATCGAGCATTACCCATTCCAAGCTCTAAAATATGGATTTGGGCATC
AAATTTACACTTGACCCTCACATATGGATTTCCTGACATAGTTTTCATCAATTAAACAATGAATA
GTAAAGCATCTAGGATCTTTTTGCTTTAGAGAAAGCTTGCTTAGTGCAGAACAATATTATTTTTC
TGTGGCAACATTTTCTAGTCTTTCAACCTTTCTTTTCTTTGTAACTATATCCTTTAGAAATTTTT
CATAAGTACACATCTGATCAATGGCTTCGAGCACTTGTACAATGTTA
Found at i:2211249 original size:20 final size:20
Alignment explanation
Indices: 2211211--2211250 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2211201 CTCTACAAGA
*
2211211 ATTTATGGCTTCAATAAAAT
1 ATTTATGGCATCAATAAAAT
2211231 ATTTCATGGCATCAA-AAAAT
1 ATTT-ATGGCATCAATAAAAT
2211251 TCCTTCATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (20 bp):
ATTTATGGCATCAATAAAAT
Found at i:2211338 original size:22 final size:20
Alignment explanation
Indices: 2211297--2211352 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
2211287 CAAGGCACAC
2211297 TTTTGTAAAGTCAAGCAGCT
1 TTTTGTAAAGTCAAGCAGCT
*
2211317 TTTTCGTAAAGTCGTAGCAGCT
1 TTTT-GTAAAGTC-AAGCAGCT
*
2211339 TTGTTGCAAAGTCA
1 TT-TTGTAAAGTCA
2211353 TAGCTCATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.13
21 8 0.27
22 16 0.53
23 2 0.07
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTTGTAAAGTCAAGCAGCT
Found at i:2220710 original size:25 final size:24
Alignment explanation
Indices: 2220670--2220717 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
2220660 AAGTTTTTCG
2220670 AATTAATAAATAAAATAT-TATTT
1 AATTAATAAATAAAATATATATTT
*
2220693 AATTAATTCAAATTAAATATATATT
1 AATTAA-T-AAATAAAATATATATT
2220718 AAAGACTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 1 0.05
25 10 0.48
26 4 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
AATTAATAAATAAAATATATATTT
Found at i:2220796 original size:77 final size:80
Alignment explanation
Indices: 2220681--2220829 Score: 182
Period size: 78 Copynumber: 1.9 Consensus size: 80
2220671 ATTAATAAAT
* *
2220681 AAAATATTATTTAATTAATTCAAATTAAATATATATT-AAAGACTTATAATTTGAATTACAATC-
1 AAAATATTATTTAATTAATTCAAATTAAATATATATTAAAAGACTTATAATCTAAATTACAATCT
2220744 TTTAATGTTTATTTA
66 TTTAATGTTTATTTA
* * * * *
2220759 AAAAT-TTATTTAATT-ATTCTGAATTATATATCA-ATTAAAAGAGTTGTAATCTAAATTACATT
1 AAAATATTATTTAATTAATTC-AAATTAAATAT-ATATTAAAAGACTTATAATCTAAATTACAAT
2220821 CTTTTAATG
64 CTTTTAATG
2220830 ATTACTTACT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
76 4 0.07
77 22 0.37
78 27 0.45
79 7 0.12
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (80 bp):
AAAATATTATTTAATTAATTCAAATTAAATATATATTAAAAGACTTATAATCTAAATTACAATCT
TTTAATGTTTATTTA
Found at i:2228066 original size:42 final size:42
Alignment explanation
Indices: 2228009--2228094 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 42
2227999 ACATTTTTCT
*
2228009 CCTTTGAAACTTTTATTTAG-GTACTCTTGCA-ATTGATTTTTG
1 CCTTAGAAACTTTTATTT-GTGTACTCTTGCATATT-ATTTTTG
* * *
2228051 CCTTAGAAATTTTTATTTGTTTACTCTTGCATATTTTTTTTG
1 CCTTAGAAACTTTTATTTGTGTACTCTTGCATATTATTTTTG
2228093 CC
1 CC
2228095 ACGAAAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
41 1 0.03
42 34 0.89
43 3 0.08
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (42 bp):
CCTTAGAAACTTTTATTTGTGTACTCTTGCATATTATTTTTG
Found at i:2232823 original size:65 final size:65
Alignment explanation
Indices: 2232764--2232891 Score: 159
Period size: 65 Copynumber: 2.0 Consensus size: 65
2232754 ATAATAAGTA
** *
2232764 AAAT-TAAAAGAATATAATTTTGATTATAATTCTTTTAATCAATATTTAATTTAAAATAATTAAA
1 AAATGTAAAAGAATATAATTAAGATTATAACTC-TTTAATCAATATTTAATTTAAAATAATTAAA
2232828 T
65 T
* * ** * *
2232829 AAATGTTAAAGATTATAATTAAGATTATAACTCTTTAATGGATATTTAATTTGAATTAATTAA
1 AAATGTAAAAGAATATAATTAAGATTATAACTCTTTAATCAATATTTAATTTAAAATAATTAA
2232892 TATTTTTTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
65 30 0.57
66 23 0.43
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (65 bp):
AAATGTAAAAGAATATAATTAAGATTATAACTCTTTAATCAATATTTAATTTAAAATAATTAAAT
Found at i:2244388 original size:46 final size:46
Alignment explanation
Indices: 2244300--2244388 Score: 144
Period size: 46 Copynumber: 1.9 Consensus size: 46
2244290 GATAAACTGG
* *
2244300 AAAATAAGCTTACGAGCTTATGGGATTAAATGGTAAGTATTTTCGT
1 AAAATAAGCATACGAGCTTATGGGATTAAATGGTAAGGATTTTCGT
2244346 AAAATAAGCATACGAGCTTATGGGA-TAAATGGTAAGAGATTTT
1 AAAATAAGCATACGAGCTTATGGGATTAAATGGTAAG-GATTTT
2244389 ATCTTAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 11 0.28
46 29 0.73
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.31
Consensus pattern (46 bp):
AAAATAAGCATACGAGCTTATGGGATTAAATGGTAAGGATTTTCGT
Found at i:2251299 original size:46 final size:45
Alignment explanation
Indices: 2251167--2251292 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 45
2251157 GATAAACTGG
* * * * *
2251167 AAAATAAGCTTACGAGCTTATGGAAT-AGTGGCAAGTATATTGGT
1 AAAATAAGCTTATGAGCTTATGGGATAAATGGTAAGTATTTTGGT
* *
2251211 AAAATAAGCTTACT-AGCCTATGGGATTAAAAGGTAAGTATTTTGGT
1 AAAATAAGCTTA-TGAGCTTATGGGA-TAAATGGTAAGTATTTTGGT
*
2251257 AAAATAAGCTTATGAGTTTATGGGATAAATGGTAAG
1 AAAATAAGCTTATGAGCTTATGGGATAAATGGTAAG
2251293 AGATTTTATC
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 21 0.31
45 12 0.18
46 35 0.51
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (45 bp):
AAAATAAGCTTATGAGCTTATGGGATAAATGGTAAGTATTTTGGT
Found at i:2255360 original size:10 final size:10
Alignment explanation
Indices: 2255347--2255399 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
2255337 AATAAGATGA
2255347 AAATAAAAAT
1 AAATAAAAAT
* *
2255357 AAATAGAATT
1 AAATAAAAAT
2255367 AAATAAAAAT
1 AAATAAAAAT
*
2255377 AAA-AAAATT
1 AAATAAAAAT
*
2255386 AAAAAAGAAAT
1 AAATAA-AAAT
2255397 AAA
1 AAA
2255400 ACAATATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
9 8 0.23
10 21 0.60
11 6 0.17
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:2255362 original size:26 final size:27
Alignment explanation
Indices: 2255311--2255381 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 27
2255301 TAAATAATAA
2255311 TAAATGAATAAATAAAAACAAGATAGAA-
1 TAAAT-AA-AAATAAAAACAAGATAGAAT
* *
2255339 TAAGATGAAAATAAAAATAA-ATAGAAT
1 TAA-ATAAAAATAAAAACAAGATAGAAT
2255366 TAAATAAAAATAAAAA
1 TAAATAAAAATAAAAA
2255382 AATTAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 18 0.47
27 14 0.37
28 4 0.11
29 2 0.05
ACGTcount: A:0.70, C:0.01, G:0.08, T:0.20
Consensus pattern (27 bp):
TAAATAAAAATAAAAACAAGATAGAAT
Found at i:2255372 original size:20 final size:19
Alignment explanation
Indices: 2255347--2255400 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
2255337 AATAAGATGA
*
2255347 AAATAAAAATAAATAGAATT
1 AAATAAAAATAAA-AAAATT
2255367 AAATAAAAATAAAAAAATT
1 AAATAAAAATAAAAAAATT
*
2255386 AAAAAAGAAATAAAA
1 AAATAA-AAATAAAA
2255401 CAATATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.32
20 21 0.68
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.19
Consensus pattern (19 bp):
AAATAAAAATAAAAAAATT
Found at i:2255593 original size:9 final size:10
Alignment explanation
Indices: 2255579--2255605 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
2255569 AATAATTAAT
2255579 AAAAAAATAA
1 AAAAAAATAA
2255589 AAAAAAATAA
1 AAAAAAATAA
2255599 AAAAAAA
1 AAAAAAA
2255606 ATATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:2255595 original size:11 final size:11
Alignment explanation
Indices: 2255579--2255608 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
2255569 AATAATTAAT
2255579 AAAAAAAT-AA
1 AAAAAAATAAA
2255589 AAAAAAATAAA
1 AAAAAAATAAA
2255600 AAAAAAATA
1 AAAAAAATA
2255609 TAATAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:2256886 original size:41 final size:41
Alignment explanation
Indices: 2256862--2257173 Score: 333
Period size: 41 Copynumber: 7.6 Consensus size: 41
2256852 GAATTGGTTT
** *
2256862 GTGAATTATTGTATGCTACCATGAT-TGAACCAAGTTAAATG
1 GTGAATTATTGTATGCTACCATGATCT-AATGAAGTTGAATG
* * * *
2256903 GTGAATTATTGTATGCTACCGTGAT-TGAATCATGTTGAATA
1 GTGAATTATTGTATGCTACCATGATCT-AATGAAGTTGAATG
* *
2256944 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATG
1 GTGAATTATTGTATGCTACCATGATCTAATGAAGTTGAATG
2256985 GTGAATTATTGTATGCTACCATGATCGT-ATGAAGTTGAATG
1 GTGAATTATTGTATGCTACCATGATC-TAATGAAGTTGAATG
* ** * *
2257026 GTGAATTAATGTATGCTACCATGATGGAATCAAGTTGATTG
1 GTGAATTATTGTATGCTACCATGATCTAATGAAGTTGAATG
* * *
2257067 ATGAATTATTGTATGCTACCATGATCAAATCAAGTTGAATG
1 GTGAATTATTGTATGCTACCATGATCTAATGAAGTTGAATG
* ** * * *
2257108 GTAAATTATTGTATATTACCATGACCGAATCAAGTTGAATG
1 GTGAATTATTGTATGCTACCATGATCTAATGAAGTTGAATG
* * * *
2257149 GTGAAGTATTGCATGTTGCCATGAT
1 GTGAATTATTGTATGCTACCATGAT
2257174 TGAATTGAAT
Statistics
Matches: 235, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
41 235 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (41 bp):
GTGAATTATTGTATGCTACCATGATCTAATGAAGTTGAATG
Found at i:2256950 original size:82 final size:82
Alignment explanation
Indices: 2256862--2257178 Score: 427
Period size: 82 Copynumber: 3.9 Consensus size: 82
2256852 GAATTGGTTT
* * * *
2256862 GTGAATTATTGTATGCTACCATGATTGAACCAAGTTAAATGGTGAATTATTGTATGCTACCGTGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
* * *
2256927 TTGAATCATGTTGAATA
66 TCGAATCAAGTTGAATG
2256944 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
* *
2257009 TCGTATGAAGTTGAATG
66 TCGAATCAAGTTGAATG
* * * *
2257026 GTGAATTAATGTATGCTACCATGATGGAATCAAGTTGATTGATGAATTATTGTATGCTACCATGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
*
2257091 TCAAATCAAGTTGAATG
66 TCGAATCAAGTTGAATG
* ** * * * * *
2257108 GTAAATTATTGTATATTACCATGACCGAATCAAGTTGAATGGTGAAGTATTGCATGTTGCCATGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
*
2257173 TTGAAT
66 TCGAAT
2257179 TGAATCAAAT
Statistics
Matches: 205, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 205 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (82 bp):
GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
TCGAATCAAGTTGAATG
Found at i:2256994 original size:123 final size:123
Alignment explanation
Indices: 2256862--2257178 Score: 447
Period size: 123 Copynumber: 2.6 Consensus size: 123
2256852 GAATTGGTTT
* * * *
2256862 GTGAATTATTGTATGCTACCATGATTGAACCAAGTTAAATGGTGAATTATTGTATGCTACCGTGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
* *
2256927 TTGAATCATGTTGAATAG-TGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATG
66 TTGAATCAAGTTG-ATAGATGAATTATTGTATGCTACCATGATCAAATCAAGTTGAATG
* * *
2256985 GTGAATTATTGTATGCTACCATGATCGTATGAAGTTGAATGGTGAATTAATGTATGCTACCATGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
* *
2257050 TGGAATCAAGTTGATTGATGAATTATTGTATGCTACCATGATCAAATCAAGTTGAATG
66 TTGAATCAAGTTGATAGATGAATTATTGTATGCTACCATGATCAAATCAAGTTGAATG
* ** * * * * *
2257108 GTAAATTATTGTATATTACCATGACCGAATCAAGTTGAATGGTGAAGTATTGCATGTTGCCATGA
1 GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
2257173 TTGAAT
66 TTGAAT
2257179 TGAATCAAAT
Statistics
Matches: 170, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
122 3 0.02
123 167 0.98
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (123 bp):
GTGAATTATTGTATGCTACCATGATCGAATCAAGTTGAATGGTGAATTATTGTATGCTACCATGA
TTGAATCAAGTTGATAGATGAATTATTGTATGCTACCATGATCAAATCAAGTTGAATG
Found at i:2257194 original size:41 final size:41
Alignment explanation
Indices: 2257149--2257245 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 41
2257139 AAGTTGAATG
* *
2257149 GTGAAGTATTGCATGTTGCCATGATTGAATTGAATCAAATT
1 GTGAACTAATGCATGTTGCCATGATTGAATTGAATCAAATT
*** **
2257190 GTGAACTAATGCATGTTTTTATGATTGAATTGAATTGAATT
1 GTGAACTAATGCATGTTGCCATGATTGAATTGAATCAAATT
* *
2257231 GTGAATTAATACATG
1 GTGAACTAATGCATG
2257246 CTACCAAGAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (41 bp):
GTGAACTAATGCATGTTGCCATGATTGAATTGAATCAAATT
Found at i:2260787 original size:19 final size:19
Alignment explanation
Indices: 2260763--2260805 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
2260753 GCTCATAATC
2260763 AGCTCACAAACATCATGGA
1 AGCTCACAAACATCATGGA
2260782 AGCTCACAAACATCATGGA
1 AGCTCACAAACATCATGGA
2260801 AGCTC
1 AGCTC
2260806 GTGGAACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.16, T:0.16
Consensus pattern (19 bp):
AGCTCACAAACATCATGGA
Found at i:2264955 original size:76 final size:79
Alignment explanation
Indices: 2264808--2264961 Score: 199
Period size: 76 Copynumber: 2.0 Consensus size: 79
2264798 ATATAGTAAG
2264808 TAAACATTAAAAGAATGTAATTCTGATTACAACTCTTTTAATGAATATTTAATTCAAAATAATTA
1 TAAACATTAAAAGAATGTAATTCTGATTACAACTCTTTTAATGAATATTTAATTCAAAATAATTA
*
2264873 AATAAGAGTTTAAA
66 AATAAGAATTTAAA
* * * ** *
2264887 TAAACGTT-AAAGAATGTAATTCAT-ATTATAAGTC-TTTAATG-ATATTTAATTTGAATTAATT
1 TAAACATTAAAAGAATGTAATTC-TGATTACAACTCTTTTAATGAATATTTAATTCAAAATAATT
*
2264948 AACTAAGAATTTAA
65 AAATAAGAATTTAA
2264962 TTAATTTGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
76 29 0.44
77 7 0.11
78 22 0.33
79 8 0.12
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (79 bp):
TAAACATTAAAAGAATGTAATTCTGATTACAACTCTTTTAATGAATATTTAATTCAAAATAATTA
AATAAGAATTTAAA
Found at i:2267527 original size:14 final size:16
Alignment explanation
Indices: 2267508--2267540 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
2267498 AATAGCATAC
2267508 ACTAATT-TCG-TCTA
1 ACTAATTGTCGTTCTA
2267522 ACTAATTGTCGTTCTA
1 ACTAATTGTCGTTCTA
2267538 ACT
1 ACT
2267541 GAACCTCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 3 0.18
16 7 0.41
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.42
Consensus pattern (16 bp):
ACTAATTGTCGTTCTA
Found at i:2269416 original size:296 final size:296
Alignment explanation
Indices: 2268881--2269472 Score: 1076
Period size: 296 Copynumber: 2.0 Consensus size: 296
2268871 GACATATCAT
*
2268881 AAAAATCAGATATTCCAAAACCACAACATATATTGTGAATCTGACATATCAACATACAACACATG
1 AAAAATCAGATATTCCAAAACCACAACATATATTGTGAATCTGACATATCAACATACAACACATA
*
2268946 ATATTTATTTGAATTTAATACAAACAATTTCAACCAATTTCATATAACAGTCAATCTCACAGTTT
66 ATATTTATTTGAATTTAACACAAACAATTTCAACCAATTTCATATAACAGTCAATCTCACAGTTT
*
2269011 AACGCTGCATGCGAAATAGTCAAATAAACAAATAATTTATTATAGAACTGAACAGAGACACGCCT
131 AACGATGCATGCGAAATAGTCAAATAAACAAATAATTTATTATAGAACTGAACAGAGACACGCCT
* *
2269076 TAACAAAATATTTAACGATTAACGTAGCGTTTCCCACGATCATCTCAAATAGTGGTTTTAACCGA
196 TAACAAAATATTTAACGATTAACGTAACGTTTCACACGATCATCTCAAATAGTGGTTTTAACCGA
2269141 ACCAATTCCTACCCCAAAGATAATAATAATTTTTAA
261 ACCAATTCCTACCCCAAAGATAATAATAATTTTTAA
* * *
2269177 AAAAATCAGATATTTCAAAAGCACAACATATATTTTGAATCTGACATATCAACATACAACACATA
1 AAAAATCAGATATTCCAAAACCACAACATATATTGTGAATCTGACATATCAACATACAACACATA
*
2269242 ATATTTATTTGAATTTAACGCAAACAATTTCAACCAATTTCATATAACAGTCAATCTCACAGTTT
66 ATATTTATTTGAATTTAACACAAACAATTTCAACCAATTTCATATAACAGTCAATCTCACAGTTT
* *
2269307 AACGATGCATGCGAAATAGTCAAATAAACACATAATTTATTATAGCACTGAACAGAGACACGCCT
131 AACGATGCATGCGAAATAGTCAAATAAACAAATAATTTATTATAGAACTGAACAGAGACACGCCT
*
2269372 TAACAAAATATTTAACGATTAACGTAACGTTTCACACTATCATCTCAAATAGTGGTTTTAACCGA
196 TAACAAAATATTTAACGATTAACGTAACGTTTCACACGATCATCTCAAATAGTGGTTTTAACCGA
2269437 ACCAATTCCTACCCCAAAGATAATAATAATTTTTAA
261 ACCAATTCCTACCCCAAAGATAATAATAATTTTTAA
2269473 CTATAAAATA
Statistics
Matches: 284, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
296 284 1.00
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (296 bp):
AAAAATCAGATATTCCAAAACCACAACATATATTGTGAATCTGACATATCAACATACAACACATA
ATATTTATTTGAATTTAACACAAACAATTTCAACCAATTTCATATAACAGTCAATCTCACAGTTT
AACGATGCATGCGAAATAGTCAAATAAACAAATAATTTATTATAGAACTGAACAGAGACACGCCT
TAACAAAATATTTAACGATTAACGTAACGTTTCACACGATCATCTCAAATAGTGGTTTTAACCGA
ACCAATTCCTACCCCAAAGATAATAATAATTTTTAA
Found at i:2273682 original size:15 final size:15
Alignment explanation
Indices: 2273664--2273697 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
2273654 TCAAGCACTC
2273664 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
* *
2273679 AAAAAAGAGGAAAAG
1 AAAAAAAAAGAAAAG
2273694 AAAA
1 AAAA
2273698 GAAAGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:2299804 original size:20 final size:20
Alignment explanation
Indices: 2299781--2299835 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
2299771 CAAGAAATCA
* *
2299781 TAAAGAAAGACAAAAGTAAT
1 TAAATAAAGCCAAAAGTAAT
2299801 TAAATAAAGCCAAAAGTAAT
1 TAAATAAAGCCAAAAGTAAT
2299821 TAAATAAAGCCAAAA
1 TAAATAAAGCCAAAA
2299836 TTCAAGTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.16
Consensus pattern (20 bp):
TAAATAAAGCCAAAAGTAAT
Found at i:2308719 original size:29 final size:29
Alignment explanation
Indices: 2308687--2308923 Score: 282
Period size: 29 Copynumber: 8.1 Consensus size: 29
2308677 TCCAAAAATA
2308687 TCACCTTTTTCAAAATAATTTCCAGAATG
1 TCACCTTTTTCAAAATAATTTCCAGAATG
2308716 TCACCTTTTT-AAAAT-ATTTCCCAGAATG
1 TCACCTTTTTCAAAATAATTT-CCAGAATG
*
2308744 TCACCTTTTTCAAAATAATTTCCAGAATA
1 TCACCTTTTTCAAAATAATTTCCAGAATG
** * *
2308773 TCACCTTTTAAAAAAAAATATTTTCCAAAATG
1 TCACCTTTT---TCAAAATAATTTCCAGAATG
* *
2308805 TTACCTTTTTTAAAATAATTTCCAGAATG
1 TCACCTTTTTCAAAATAATTTCCAGAATG
* *
2308834 TCA-CTTTTTCAAAATAATTCCCAAAATG
1 TCACCTTTTTCAAAATAATTTCCAGAATG
* *
2308862 TTACATTTTTCAAAATAATTTCCAGAATG
1 TCACCTTTTTCAAAATAATTTCCAGAATG
* * * *
2308891 TCACCTTTTTTACAATAATTACCAAAATG
1 TCACCTTTTTCAAAATAATTTCCAGAATG
2308920 TCAC
1 TCAC
2308924 TGGGTCGAGT
Statistics
Matches: 176, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
27 4 0.02
28 47 0.27
29 98 0.56
30 4 0.02
32 23 0.13
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (29 bp):
TCACCTTTTTCAAAATAATTTCCAGAATG
Found at i:2308756 original size:57 final size:57
Alignment explanation
Indices: 2308674--2308923 Score: 313
Period size: 57 Copynumber: 4.3 Consensus size: 57
2308664 CACATTCGAA
* *
2308674 AATTCCAAAAATATCACCTTTTTCAAAATAATTTCCAGAATGTCACCTTTTTAAAAT
1 AATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAGAATGTCACCTTTTTAAAAT
* * * *
2308731 ATTTCCCAGAATGTCACCTTTTTCAAAATAATTTCCAGAATATCACCTTTTAAAAAAAAAT
1 AATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAGAATGTCACCTTTT----TAAAAT
* * * *
2308792 ATTTTCCAAAATGTTACCTTTTTTAAAATAATTTCCAGAATGTCA-CTTTTTCAAAAT
1 AATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAGAATGTCACCTTTTT-AAAAT
* * *
2308849 AATTCCCAAAATGTTACATTTTTCAAAATAATTTCCAGAATGTCACCTTTTTTACAAT
1 AATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAGAATGTCACC-TTTTTAAAAT
*
2308907 AATTACCAAAATGTCAC
1 AATTCCCAAAATGTCAC
2308924 TGGGTCGAGT
Statistics
Matches: 167, Mismatches: 19, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
57 92 0.55
58 20 0.12
59 5 0.03
60 5 0.03
61 45 0.27
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.38
Consensus pattern (57 bp):
AATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAGAATGTCACCTTTTTAAAAT
Found at i:2312147 original size:11 final size:11
Alignment explanation
Indices: 2312130--2312159 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
2312120 ACTTCGGAAT
2312130 CCGTTTAATGG
1 CCGTTTAATGG
*
2312141 TCGTTTAATGG
1 CCGTTTAATGG
2312152 CCGTTTAA
1 CCGTTTAA
2312160 AGCCGGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (11 bp):
CCGTTTAATGG
Found at i:2312248 original size:29 final size:29
Alignment explanation
Indices: 2312207--2312356 Score: 201
Period size: 29 Copynumber: 5.2 Consensus size: 29
2312197 CACATTCAAA
* *
2312207 AATTCCCAAAATGTCACCCTTTTCAAAAT
1 AATTCCCAGAATGTCACCTTTTTCAAAAT
* * *
2312236 AATTTCCAGAATGTCACATTTTTTAAAAT
1 AATTCCCAGAATGTCACCTTTTTCAAAAT
*
2312265 AATTCCCAGAATGTCATCTTTTTCAAAAT
1 AATTCCCAGAATGTCACCTTTTTCAAAAT
** * *
2312294 AATTTTCAAAATGTCACCTTTTTCAACAT
1 AATTCCCAGAATGTCACCTTTTTCAAAAT
*
2312323 AATTCCCAGAATGTCACCTTTTTCACAAT
1 AATTCCCAGAATGTCACCTTTTTCAAAAT
2312352 AATTC
1 AATTC
2312357 TCAAAATACC
Statistics
Matches: 102, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 102 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.37
Consensus pattern (29 bp):
AATTCCCAGAATGTCACCTTTTTCAAAAT
Found at i:2313446 original size:44 final size:46
Alignment explanation
Indices: 2313336--2313447 Score: 183
Period size: 46 Copynumber: 2.5 Consensus size: 46
2313326 CCCTTTATCA
2313336 CATAAGCTCGTAAGCTTATTTTACCAAAATACTTATCATTTAATTC
1 CATAAGCTCGTAAGCTTATTTTACCAAAATACTTATCATTTAATTC
* * *
2313382 CATAAGCTCGTAAGCATATTTTACCAATATACTTGTCA-TT-ATTC
1 CATAAGCTCGTAAGCTTATTTTACCAAAATACTTATCATTTAATTC
2313426 CATAAGCTCGTAAGCTTATTTT
1 CATAAGCTCGTAAGCTTATTTT
2313448 CCAGTTTATC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 25 0.40
45 2 0.03
46 35 0.56
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (46 bp):
CATAAGCTCGTAAGCTTATTTTACCAAAATACTTATCATTTAATTC
Found at i:2318938 original size:15 final size:15
Alignment explanation
Indices: 2318918--2318974 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 15
2318908 AACCATGCAG
2318918 GGGGAATCTGTACCC
1 GGGGAATCTGTACCC
2318933 GGGGAATC-GATACCCC
1 GGGGAATCTG-TA-CCC
*
2318949 TGGGGGGAATCTGTTCCC
1 ---GGGGAATCTGTACCC
2318967 GGGGAATC
1 GGGGAATC
2318975 GATACCCCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
14 1 0.03
15 18 0.51
16 3 0.09
18 3 0.09
19 9 0.26
20 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.37, T:0.19
Consensus pattern (15 bp):
GGGGAATCTGTACCC
Found at i:2318991 original size:35 final size:34
Alignment explanation
Indices: 2318917--2319001 Score: 152
Period size: 34 Copynumber: 2.5 Consensus size: 34
2318907 AAACCATGCA
*
2318917 GGGGGAATCTGTACCCGGGGAATCGATACCCCTG
1 GGGGGAATCTGTTCCCGGGGAATCGATACCCCTG
2318951 GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTG
1 GGGGGAATCTGTTCCCGGGGAATCGATA-CCCCTG
2318986 GGGGGAATCTGTTCCC
1 GGGGGAATCTGTTCCC
2319002 CCTTGGGGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
34 27 0.55
35 22 0.45
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (34 bp):
GGGGGAATCTGTTCCCGGGGAATCGATACCCCTG
Found at i:2318992 original size:20 final size:20
Alignment explanation
Indices: 2318967--2319027 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 20
2318957 ATCTGTTCCC
2318967 GGGGAATC-GATACCCCCTGG
1 GGGGAATCTG-TACCCCCTGG
*
2318987 GGGGAATCTGTTCCCCCTTGG
1 GGGGAATCTGTACCCCC-TGG
2319008 GGGGAATCTGTACCCCCTGG
1 GGGGAATCTGTACCCCCTGG
2319028 ACAATCTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (20 bp):
GGGGAATCTGTACCCCCTGG
Found at i:2322518 original size:34 final size:35
Alignment explanation
Indices: 2322467--2322551 Score: 145
Period size: 34 Copynumber: 2.5 Consensus size: 35
2322457 AAACCATGCA
* *
2322467 GGGGGAATATGTACCCGGGGAATCGATA-CCCCTG
1 GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTG
2322501 GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTG
1 GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTG
2322536 GGGGGAATCTGTTCCC
1 GGGGGAATCTGTTCCC
2322552 CCTGGACAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 26 0.54
35 22 0.46
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.20
Consensus pattern (35 bp):
GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTG
Found at i:2322552 original size:20 final size:20
Alignment explanation
Indices: 2322495--2322556 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
2322485 GGAATCGATA
2322495 CCCCTGGGGGGAATCTGTT-
1 CCCCTGGGGGGAATCTGTTC
*
2322514 -CCC---GGGGAATC-GATAC
1 CCCCTGGGGGGAATCTG-TTC
2322530 CCCCTGGGGGGAATCTGTTC
1 CCCCTGGGGGGAATCTGTTC
2322550 CCCCTGG
1 CCCCTGG
2322557 ACAATCTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
14 1 0.03
15 9 0.26
17 3 0.09
18 3 0.09
20 17 0.50
21 1 0.03
ACGTcount: A:0.13, C:0.32, G:0.34, T:0.21
Consensus pattern (20 bp):
CCCCTGGGGGGAATCTGTTC
Found at i:2325773 original size:26 final size:25
Alignment explanation
Indices: 2325743--2325791 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
2325733 AAAACAAGTA
* *
2325743 TTTAAATAATTATTTCATAATATATT
1 TTTAAAAAAATATTTCAT-ATATATT
*
2325769 TTTAAAAAAATATTTTATATATA
1 TTTAAAAAAATATTTCATATATA
2325792 AAAATATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTAAAAAAATATTTCATATATATT
Found at i:2325805 original size:116 final size:112
Alignment explanation
Indices: 2325575--2325780 Score: 288
Period size: 116 Copynumber: 1.8 Consensus size: 112
2325565 ATTCTTAAAA
*
2325575 AATAATTTATTTTAATTACTAATTTTTTGTAATATTTTTGTCAAAACAAGTATTTAAATTATTAT
1 AATAATTTATTTTAATTACTAATTTTTTGTAATATTTTTGTCAAAACAAGTATTTAAATAATTAT
** * * **
2325640 TTCATAATAATTTAATACTAACATCCTTAAAAAATAATTTATTACTT
66 TTCATAATAATTTAATAAAAAAATACTTAAAAAATAAAATATTACTT
2325687 AATAATTTATTTTAATTACTAATTTTTTTGTAATATTCTTTTTGTCAAAACAAGTATTTAAATAA
1 AATAATTTATTTTAATTACTAA-TTTTTTGTAATA---TTTTTGTCAAAACAAGTATTTAAATAA
*
2325752 TTATTTCATAATATATTT-TTAAAAAAATA
62 TTATTTCATAATA-ATTTAATAAAAAAATA
2325781 TTTTATATAT
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
112 22 0.27
113 12 0.14
116 45 0.54
117 4 0.05
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (112 bp):
AATAATTTATTTTAATTACTAATTTTTTGTAATATTTTTGTCAAAACAAGTATTTAAATAATTAT
TTCATAATAATTTAATAAAAAAATACTTAAAAAATAAAATATTACTT
Found at i:2327243 original size:20 final size:19
Alignment explanation
Indices: 2327218--2327271 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
2327208 GCGAAATAAA
2327218 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
2327238 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
2327258 AATCGCAACGCGAT
1 AATCGCAACGCGAT
2327272 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:2327282 original size:21 final size:21
Alignment explanation
Indices: 2327256--2327355 Score: 82
Period size: 21 Copynumber: 4.8 Consensus size: 21
2327246 ATCAGTTCCC
2327256 AGAATCGCAACGCGATTATGA
1 AGAATCGCAACGCGATTATGA
*
2327277 AGAATCGCAATGCGA-TA-GTA
1 AGAATCGCAACGCGATTATG-A
** * **
2327297 CA-AATTCGCATTGCGATTTTCC
1 -AGAA-TCGCAACGCGATTATGA
*
2327319 AGAATCGCAACGCGAATATGA
1 AGAATCGCAACGCGATTATGA
2327340 A-AATCGCAACGCGATT
1 AGAATCGCAACGCGATT
2327356 TTGACTATCA
Statistics
Matches: 61, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
19 1 0.02
20 19 0.31
21 38 0.62
22 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (21 bp):
AGAATCGCAACGCGATTATGA
Found at i:2327346 original size:20 final size:20
Alignment explanation
Indices: 2327321--2327393 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
2327311 GATTTTCCAG
2327321 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATATGAA
* * *
2327341 AATCGCAACGCGATTTTGAC
1 AATCGCAACGCGAATATGAA
* * *
2327361 TATCACAACGCGAACAT-ATA
1 AATCGCAACGCGAATATGA-A
2327381 AATCGCAACGCGA
1 AATCGCAACGCGA
2327394 TTCTGACTAT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 1 0.02
20 40 0.98
ACGTcount: A:0.40, C:0.25, G:0.18, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATATGAA
Found at i:2327384 original size:40 final size:40
Alignment explanation
Indices: 2327326--2327410 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
2327316 TCCAGAATCG
* *
2327326 CAACGCGAATATGAAAATCGCAACGCGATTTTGACTATCA
1 CAACGCGAACATGAAAATCGCAACGCGATTCTGACTATCA
*
2327366 CAACGCGAACAT-ATAAATCGCAACGCGATTCTGACTATCG
1 CAACGCGAACATGA-AAATCGCAACGCGATTCTGACTATCA
2327406 CAACG
1 CAACG
2327411 AGTATCCGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.02
40 40 0.98
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (40 bp):
CAACGCGAACATGAAAATCGCAACGCGATTCTGACTATCA
Found at i:2327405 original size:20 final size:20
Alignment explanation
Indices: 2327322--2327410 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
2327312 ATTTTCCAGA
* * **
2327322 ATCGCAACGCGAATATGAAA
1 ATCGCAACGCGATTCTGACT
*
2327342 ATCGCAACGCGATTTTGACT
1 ATCGCAACGCGATTCTGACT
* *
2327362 ATCACAACGCGA-ACAT-A-T
1 ATCGCAACGCGATTC-TGACT
2327380 AAATCGCAACGCGATTCTGACT
1 --ATCGCAACGCGATTCTGACT
2327402 ATCGCAACG
1 ATCGCAACG
2327411 AGTATCCGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
18 1 0.02
19 1 0.02
20 49 0.91
21 2 0.04
22 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:2327447 original size:41 final size:41
Alignment explanation
Indices: 2327402--2327551 Score: 157
Period size: 41 Copynumber: 3.7 Consensus size: 41
2327392 GATTCTGACT
* * **
2327402 ATCGCAACGAGTATCCGTAAAATCATAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
2327443 ATCGCAACAACAATACGTAAAATCGCAACACGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
2327484 ATCACAACGAGAATACGT-AAATCGCAACGCGTAT-C-TATA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTA-A
* *
2327523 ATCGCAATGCGAAT-CTGT-AAATCGCAACG
1 ATCGCAACGAGAATAC-GTAAAATCGCAACG
2327552 AGATTCTGAC
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 3 0.03
39 26 0.28
40 15 0.16
41 49 0.53
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:2327512 original size:20 final size:19
Alignment explanation
Indices: 2327438--2327554 Score: 85
Period size: 20 Copynumber: 5.9 Consensus size: 19
2327428 AACGCGTATC
* *
2327438 CGTAAATCGCAACAACAAT
1 CGTAAATCGCAACGAGAAT
*
2327457 ACGTAAAATCGCAAC-ACGTAT
1 -CGT-AAATCGCAACGA-GAAT
*
2327478 CCGTAAATCACAACGAGAAT
1 -CGTAAATCGCAACGAGAAT
* *
2327498 ACGTAAATCGCAACGCGTAT
1 -CGTAAATCGCAACGAGAAT
* *
2327518 C-TATAATCGCAATGCGAAT
1 CGTA-AATCGCAACGAGAAT
2327537 CTGTAAATCGCAACGAGA
1 C-GTAAATCGCAACGAGA
2327555 TTCTGACTAT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
18 2 0.03
19 15 0.19
20 43 0.55
21 18 0.23
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (19 bp):
CGTAAATCGCAACGAGAAT
Found at i:2327527 original size:19 final size:20
Alignment explanation
Indices: 2327501--2327551 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
2327491 CGAGAATACG
*
2327501 TAAATCGCAACGCGTATCTA
1 TAAATCGCAACGCGAATCTA
* *
2327521 T-AATCGCAATGCGAATCTG
1 TAAATCGCAACGCGAATCTA
2327540 TAAATCGCAACG
1 TAAATCGCAACG
2327552 AGATTCTGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.24
Consensus pattern (20 bp):
TAAATCGCAACGCGAATCTA
Found at i:2328459 original size:24 final size:24
Alignment explanation
Indices: 2328401--2328447 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
2328391 AGTCAGTATT
*
2328401 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATCTTGGTCAATACC
2328425 CGAACTTTGATCTTGGTCAATAC
1 CGAACTTTGATCTTGGTCAATAC
2328448 TCGGATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAACTTTGATCTTGGTCAATACC
Found at i:2330914 original size:20 final size:20
Alignment explanation
Indices: 2330889--2330977 Score: 117
Period size: 20 Copynumber: 4.5 Consensus size: 20
2330879 CAACGCGGAA
2330889 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAA-ATGACT
*
2330909 ATCGCAACACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
* *
2330929 ATCGCAATGCGGAATTGACT
1 ATCGCAACGCGGAAATGACT
* *
2330949 ATCACAATGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
2330969 ATCGCAACG
1 ATCGCAACG
2330978 AGAGAATCGC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
20 57 0.95
21 3 0.05
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:2331006 original size:19 final size:19
Alignment explanation
Indices: 2330982--2331069 Score: 105
Period size: 19 Copynumber: 4.8 Consensus size: 19
2330972 GCAACGAGAG
2330982 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2331001 AATCGCAATGTGAAATGAA
1 AATCGCAATGCGAAATGAA
*
2331020 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
2331034 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
2331054 AATCGCAACGCGAAAT
1 AATCGCAATGCGAAAT
2331070 TAGTTTCGCG
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
14 8 0.14
16 5 0.09
17 1 0.02
18 3 0.05
19 30 0.52
20 11 0.19
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Done.