Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009628.1 Hibiscus syriacus cultivar Beakdansim tig00117021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2284295
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 2 of 10
Found at i:255728 original size:18 final size:18
Alignment explanation
Indices: 255705--255741 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
255695 AACAGAACCG
255705 AGAGAAAA-AAGAAAAAAC
1 AGAGAAAAGAA-AAAAAAC
255723 AGAGAAAAGAAAAAAAAC
1 AGAGAAAAGAAAAAAAAC
255741 A
1 A
255742 ACAACTATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (18 bp):
AGAGAAAAGAAAAAAAAC
Found at i:283433 original size:10 final size:10
Alignment explanation
Indices: 283434--283487 Score: 54
Period size: 10 Copynumber: 5.0 Consensus size: 10
283424 GGTTATGTTC
*
283434 GTTCGGTTAT
1 GTTCGTTTAT
*
283444 GTTTGTTTAT
1 GTTCGTTTAT
283454 GTTCGTTCGGTTAT
1 GTTCG-T---TTAT
283468 GTTCGTTTAT
1 GTTCGTTTAT
283478 GTTCGTTTAT
1 GTTCGTTTAT
283488 TTATGTTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 26 0.70
11 1 0.03
13 1 0.03
14 9 0.24
ACGTcount: A:0.09, C:0.09, G:0.24, T:0.57
Consensus pattern (10 bp):
GTTCGTTTAT
Found at i:283436 original size:14 final size:14
Alignment explanation
Indices: 283419--283474 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
283409 CGTTCATTTA
283419 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
283433 CGTTCGGTTATG-T
1 CGTTCGGTTATGTT
*
283446 --TT-GTTTATGTT
1 CGTTCGGTTATGTT
283457 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
283471 CGTT
1 CGTT
283475 TATGTTCGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
10 6 0.17
11 3 0.08
13 3 0.08
14 24 0.67
ACGTcount: A:0.07, C:0.12, G:0.27, T:0.54
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:283453 original size:24 final size:24
Alignment explanation
Indices: 283406--283484 Score: 113
Period size: 24 Copynumber: 3.3 Consensus size: 24
283396 CATAGGTCTC
** * *
283406 GTTCGTTCATTTACGTTCGGTTAT
1 GTTCGTTCGGTTATGTTCGTTTAT
*
283430 GTTCGTTCGGTTATGTTTGTTTAT
1 GTTCGTTCGGTTATGTTCGTTTAT
283454 GTTCGTTCGGTTATGTTCGTTTAT
1 GTTCGTTCGGTTATGTTCGTTTAT
283478 GTTCGTT
1 GTTCGTT
283485 TATTTATGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.09, C:0.13, G:0.24, T:0.54
Consensus pattern (24 bp):
GTTCGTTCGGTTATGTTCGTTTAT
Found at i:283491 original size:24 final size:24
Alignment explanation
Indices: 283406--283494 Score: 106
Period size: 24 Copynumber: 3.7 Consensus size: 24
283396 CATAGGTCTC
* * *
283406 GTTCGTTCATTTACGTTCGGTTAT
1 GTTCGTTCAGTTATGTTCGTTTAT
* *
283430 GTTCGTTCGGTTATGTTTGTTTAT
1 GTTCGTTCAGTTATGTTCGTTTAT
*
283454 GTTCGTTCGGTTATGTTCGTTTAT
1 GTTCGTTCAGTTATGTTCGTTTAT
* *
283478 GTTCGTTTATTTATGTT
1 GTTCGTTCAGTTATGTT
283495 TAACCCAATC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.10, C:0.11, G:0.22, T:0.56
Consensus pattern (24 bp):
GTTCGTTCAGTTATGTTCGTTTAT
Found at i:283863 original size:10 final size:10
Alignment explanation
Indices: 283848--283905 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
283838 GGTCTCCAAT
283848 GTTTATGTTC
1 GTTTATGTTC
283858 GTTTATGTTC
1 GTTTATGTTC
*
283868 GTGTTCAT-TTAT
1 GT-TT-ATGTT-C
**
283880 GTTCGTGTTC
1 GTTTATGTTC
283890 GTTTATGTTC
1 GTTTATGTTC
283900 GTTTAT
1 GTTTAT
283906 TTATTAAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
10 27 0.71
11 7 0.18
12 4 0.11
ACGTcount: A:0.10, C:0.10, G:0.21, T:0.59
Consensus pattern (10 bp):
GTTTATGTTC
Found at i:283872 original size:16 final size:16
Alignment explanation
Indices: 283853--283901 Score: 89
Period size: 16 Copynumber: 3.1 Consensus size: 16
283843 CCAATGTTTA
283853 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
283869 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
283885 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
283901 T
1 T
283902 TTATTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.08, C:0.12, G:0.22, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:283991 original size:16 final size:16
Alignment explanation
Indices: 283970--284002 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
283960 AAAAAAAATT
283970 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
283986 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
284002 T
1 T
284003 TTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:288010 original size:22 final size:22
Alignment explanation
Indices: 287980--288022 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
287970 TACAGAATGT
*
287980 CAAGGGGGAACCGATACCCCCA
1 CAAGAGGGAACCGATACCCCCA
*
288002 CAAGAGGGAACCGATTCCCCC
1 CAAGAGGGAACCGATACCCCC
288023 TAAAGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.37, G:0.26, T:0.07
Consensus pattern (22 bp):
CAAGAGGGAACCGATACCCCCA
Found at i:289803 original size:103 final size:103
Alignment explanation
Indices: 289474--289795 Score: 617
Period size: 103 Copynumber: 3.1 Consensus size: 103
289464 GCTAGGGGTC
*
289474 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGAAACATGTGTGAAGTCTGGTGAGACACATA
1 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
289539 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
*
289577 ATATGTGGTCTTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
1 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
*
289642 CTTGATCCTTAGTATATGTATATGATTCTTAAGGAATG
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
289680 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
1 ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
289745 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
66 CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
289783 ATATGTGGTCCTT
1 ATATGTGGTCCTT
289796 ATGGACATTA
Statistics
Matches: 214, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 214 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (103 bp):
ATATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATA
CTTGATCCCTAGTATATGTATATGATTCTTAAGGAATG
Found at i:289879 original size:23 final size:23
Alignment explanation
Indices: 289811--289871 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
289801 CATTATTATA
*
289811 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
*
289834 CGGCACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
289857 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
289872 TTTATATGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:295744 original size:18 final size:18
Alignment explanation
Indices: 295718--295753 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
295708 AAATGCTACC
*
295718 AAAATACTTAACATAAAG
1 AAAAAACTTAACATAAAG
*
295736 AAAAAACTTACCATAAAG
1 AAAAAACTTAACATAAAG
295754 CCACCTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.14, G:0.06, T:0.19
Consensus pattern (18 bp):
AAAAAACTTAACATAAAG
Found at i:302623 original size:17 final size:17
Alignment explanation
Indices: 302603--302636 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
302593 ATAATTTTGA
* *
302603 TATTTTTAATTTTATAT
1 TATTTTGAATATTATAT
302620 TATTTTGAATATTATAT
1 TATTTTGAATATTATAT
302637 AAAAAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
TATTTTGAATATTATAT
Found at i:312853 original size:60 final size:59
Alignment explanation
Indices: 312741--312903 Score: 168
Period size: 60 Copynumber: 2.7 Consensus size: 59
312731 GAATGAATTT
* * * * * * *
312741 GGATGAAATTGGAA-GATCTAAAGTTTAGGGACCAATTTAGAATGAGATTCATAATTTGA
1 GGATGAAAATGGAATGTTCAAAAGTTTA-GGACTAATTTAAAATGAGAGTCATAATTTAA
* * *
312800 GGATGAAAATGGAATGTTCAAAAGTTTGAGGACTAGTTTAAAATGATAGTCATAGTTTAA
1 GGATGAAAATGGAATGTTCAAAAGTTT-AGGACTAATTTAAAATGAGAGTCATAATTTAA
* *
312860 GGAT-AAAATTAGAATGTTTAAAAGTTTAGGAACTAATTTAAAAT
1 GGATGAAAA-TGGAATGTTCAAAAGTTTAGG-ACTAATTTAAAAT
312904 AAAGGTTATA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
59 20 0.23
60 66 0.76
61 1 0.01
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (59 bp):
GGATGAAAATGGAATGTTCAAAAGTTTAGGACTAATTTAAAATGAGAGTCATAATTTAA
Found at i:312961 original size:14 final size:14
Alignment explanation
Indices: 312942--312968 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
312932 AATTAACTCT
312942 TTTTTTTCTTTTTC
1 TTTTTTTCTTTTTC
312956 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
312969 AAGATTTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTCTTTTTC
Found at i:314953 original size:36 final size:36
Alignment explanation
Indices: 314912--315142 Score: 332
Period size: 36 Copynumber: 6.6 Consensus size: 36
314902 GGCAGTCATA
*
314912 TGGTTCTCCACTGATGGGAGGAGGACAGCAATATTC
1 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
314948 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
1 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
*
314984 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATCC
1 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
315020 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
1 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
*
315056 T-GTCTCTCCACAGAT--G-GGAGGACAACAATATTC
1 TGGT-TCTCCACAGATGGGAGGAGGACAGCAATATTC
* * *
315089 CGGCTCTCCACAGAT--G-GGAGGACAACAATATTC
1 TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
* *
315122 CGGCTCTCCACAGATGGGAGG
1 TGGTTCTCCACAGATGGGAGG
315143 TCAGCGATAT
Statistics
Matches: 184, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
33 60 0.33
34 2 0.01
35 3 0.02
36 119 0.65
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (36 bp):
TGGTTCTCCACAGATGGGAGGAGGACAGCAATATTC
Found at i:316683 original size:29 final size:29
Alignment explanation
Indices: 316633--316689 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
316623 GAGCGTGTAA
**
316633 AGGGTTTCTGATGCCATTTTTCTCCTCAG
1 AGGGTTTCTGATGCCAACTTTCTCCTCAG
*
316662 AGGGTTTCTGATGTCAACTTTCTCCTCA
1 AGGGTTTCTGATGCCAACTTTCTCCTCA
316690 TACATTGGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (29 bp):
AGGGTTTCTGATGCCAACTTTCTCCTCAG
Found at i:319303 original size:12 final size:11
Alignment explanation
Indices: 319282--319311 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
319272 AAATGTTACA
319282 ATTTTTATAAC
1 ATTTTTATAAC
319293 ATTTTTCATAAC
1 ATTTTT-ATAAC
319305 ATTTTTA
1 ATTTTTA
319312 GTTGACAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTTTATAAC
Found at i:323149 original size:25 final size:25
Alignment explanation
Indices: 323103--323151 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
323093 CGGATATGTT
* *
323103 AATAAAATTGATAAACGTATAATAA
1 AATAAAATTAATAAACATATAATAA
323128 AATAAAATTAATAAA-ATAATAATA
1 AATAAAATTAATAAACAT-ATAATA
323152 TTTTAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (25 bp):
AATAAAATTAATAAACATATAATAA
Found at i:327185 original size:30 final size:30
Alignment explanation
Indices: 327140--327196 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
327130 AAGTGGCTTG
327140 ATTGACAACAATTAAATAGATAGGTGGTCTA
1 ATTGACAACAATTAAA-AGATAGGTGGTCTA
327171 ATTGACAA-AATTAAAAGATAGGTGGT
1 ATTGACAACAATTAAAAGATAGGTGGT
327197 AAAAGCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 11 0.42
30 7 0.27
31 8 0.31
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (30 bp):
ATTGACAACAATTAAAAGATAGGTGGTCTA
Found at i:333515 original size:28 final size:26
Alignment explanation
Indices: 333478--333531 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
333468 GAGAAATATT
* *
333478 TTTAAGATAATATACATATATAATTTTA
1 TTTAAAATAATATA-A-ATAAAATTTTA
333506 TTTAAAATAATATAAATAAAATTTTA
1 TTTAAAATAATATAAATAAAATTTTA
333532 GAATAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
27 1 0.04
28 13 0.54
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TTTAAAATAATATAAATAAAATTTTA
Found at i:339248 original size:23 final size:22
Alignment explanation
Indices: 339204--339248 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
339194 AATATCGTGG
*
339204 GGGAACCGAAACCCCCACAGGA
1 GGGAACCGAAACCCCCAAAGGA
**
339226 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGAAACCCCC-AAAGGA
339249 AAGTTGTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.33, C:0.33, G:0.27, T:0.07
Consensus pattern (22 bp):
GGGAACCGAAACCCCCAAAGGA
Found at i:340840 original size:23 final size:23
Alignment explanation
Indices: 340808--340874 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
340798 TTATTATATG
340808 GCACTACGGTGCAATTCTACGCA
1 GCACTACGGTGCAATTCTACGCA
* * **
340831 GCACTCCGGTACAATTCTACGTG
1 GCACTACGGTGCAATTCTACGCA
* * *
340854 GCACTTCGGTGTAATTATACG
1 GCACTACGGTGCAATTCTACG
340875 AGTTGTGGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (23 bp):
GCACTACGGTGCAATTCTACGCA
Found at i:342863 original size:32 final size:32
Alignment explanation
Indices: 342822--342942 Score: 124
Period size: 31 Copynumber: 3.8 Consensus size: 32
342812 AGTCGAGGGT
342822 TTACCTATGTTCTATGGAACATATGGACA-TAA
1 TTACCTATGTTCTATGGAACATATGGACAGT-A
* * *
342854 TTACCTATG-TCTTTCGGGATATATGGACAGTA
1 TTACCTATGTTCTAT-GGAACATATGGACAGTA
*
342886 -TACCTATGTTCTAAGGAACATATGGACAGT-
1 TTACCTATGTTCTATGGAACATATGGACAGTA
* * * *
342916 TTACCTAGGTTCTTTGGGACCTATGGA
1 TTACCTATGTTCTATGGAACATATGGA
342943 AAATTGCCGA
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
31 47 0.64
32 25 0.34
33 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (32 bp):
TTACCTATGTTCTATGGAACATATGGACAGTA
Found at i:343075 original size:10 final size:10
Alignment explanation
Indices: 343060--343123 Score: 56
Period size: 10 Copynumber: 5.9 Consensus size: 10
343050 TTGTTCACGG
343060 TATTGTTCAT
1 TATTGTTCAT
*
343070 TATTGTTAACAG
1 TATTGTT--CAT
343082 TATTGTTCAT
1 TATTGTTCAT
*
343092 TATTGTTAACAG
1 TATTGTT--CAT
*
343104 TACTGTTCAT
1 TATTGTTCAT
343114 TATTTGTTCA
1 TA-TTGTTCA
343124 CAGTACTGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
10 20 0.47
11 6 0.14
12 17 0.40
ACGTcount: A:0.25, C:0.11, G:0.12, T:0.52
Consensus pattern (10 bp):
TATTGTTCAT
Found at i:343076 original size:22 final size:22
Alignment explanation
Indices: 343048--343136 Score: 124
Period size: 22 Copynumber: 4.0 Consensus size: 22
343038 ACCATTCGGG
* * *
343048 TATTGTTCACGGTATTGTTCAT
1 TATTGTTAACAGTACTGTTCAT
*
343070 TATTGTTAACAGTATTGTTCAT
1 TATTGTTAACAGTACTGTTCAT
343092 TATTGTTAACAGTACTGTTCAT
1 TATTGTTAACAGTACTGTTCAT
*
343114 TATTTGTTCACAGTACTGTTCAT
1 TA-TTGTTAACAGTACTGTTCAT
343137 AAAACGTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
22 43 0.69
23 19 0.31
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (22 bp):
TATTGTTAACAGTACTGTTCAT
Found at i:343534 original size:34 final size:34
Alignment explanation
Indices: 343479--343546 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
343469 GACATAACAC
* *
343479 ATATCACATCACTTAATATAATAATATAATATAT
1 ATATCACATCACTTAAGATAATAACATAATATAT
* *
343513 ATATCACATCA-TCTAGGATAATGACATAATATAT
1 ATATCACATCACT-TAAGATAATAACATAATATAT
343547 GTCATATCAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 1 0.03
34 28 0.97
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.35
Consensus pattern (34 bp):
ATATCACATCACTTAAGATAATAACATAATATAT
Found at i:344247 original size:24 final size:23
Alignment explanation
Indices: 344203--344263 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
344193 AATTATAAGA
*
344203 AATTTTAAAAATATAAAATTTCTT
1 AATTTTAAAAA-ATAAAATTTCGT
*
344227 AATTTTAAAAAACTAATATTTCGT
1 AATTTTAAAAAA-TAAAATTTCGT
*
344251 -ATATTAAAAAATA
1 AATTTTAAAAAATA
344264 TTATATAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 2 0.06
23 11 0.33
24 20 0.61
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (23 bp):
AATTTTAAAAAATAAAATTTCGT
Found at i:349926 original size:15 final size:15
Alignment explanation
Indices: 349906--349935 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
349896 GCTGGGTGGG
*
349906 CGGATGTGGGGCGGA
1 CGGATGCGGGGCGGA
349921 CGGATGCGGGGCGGA
1 CGGATGCGGGGCGGA
349936 TAATGTCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.60, T:0.10
Consensus pattern (15 bp):
CGGATGCGGGGCGGA
Found at i:351292 original size:162 final size:163
Alignment explanation
Indices: 351024--351348 Score: 589
Period size: 162 Copynumber: 2.0 Consensus size: 163
351014 GCAATCGTCC
351024 CTATCACGGTTAATCTACATTCACTTGTTGATTCATTTGAGCGGATGACAACATCAGCCTTGGCG
1 CTATCACGGTTAATCTACATTCACTTGTTGATTCATTTGAGCGGATGACAACATCAGCCTTGGCG
*
351089 GCACGGGGACTGTCCTGGCTTAGATATCAATCATACTGAATGAAATCAGCCAGTTTGGAAATTAG
66 GCACGGGGACTGTCCTGGCTTAGATATCAATCATACTGAATGAAATCAGCCAGGTTGGAAATTAG
351154 TTATGATTCAAAAGAATCAACATCCTGATGCAT
131 TTATGATTCAAAAGAATCAACATCCTGATGCAT
*
351187 CTATCACGGTTAATCTACATTCGCTTGTTGATTC-TTTGAGCGGATGACAACATCAGCCTTGGCG
1 CTATCACGGTTAATCTACATTCACTTGTTGATTCATTTGAGCGGATGACAACATCAGCCTTGGCG
*
351251 GCACGGGGACTGTTCTGGCTTAGATATCAATCATACTGAATGAAATCAGCCAGGTTGGAAATTAG
66 GCACGGGGACTGTCCTGGCTTAGATATCAATCATACTGAATGAAATCAGCCAGGTTGGAAATTAG
* * *
351316 TTCTGATTCGAAAGAATCGACATCCTGATGCAT
131 TTATGATTCAAAAGAATCAACATCCTGATGCAT
351349 GTCTCGGTAA
Statistics
Matches: 156, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
162 123 0.79
163 33 0.21
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (163 bp):
CTATCACGGTTAATCTACATTCACTTGTTGATTCATTTGAGCGGATGACAACATCAGCCTTGGCG
GCACGGGGACTGTCCTGGCTTAGATATCAATCATACTGAATGAAATCAGCCAGGTTGGAAATTAG
TTATGATTCAAAAGAATCAACATCCTGATGCAT
Found at i:353218 original size:29 final size:28
Alignment explanation
Indices: 353155--353249 Score: 174
Period size: 29 Copynumber: 3.4 Consensus size: 28
353145 GATCAGATCC
353155 AATTAAGTCCCTAAAGTTCTATTTTTTT
1 AATTAAGTCCCTAAAGTTCTATTTTTTT
353183 AATTAAGTCCCTAAAGTTCTATTTTTTTT
1 AATTAAGTCCCTAAAGTTCTA-TTTTTTT
353212 AATTAAGTCCCTAAAGTTCTA-TTTTTT
1 AATTAAGTCCCTAAAGTTCTATTTTTTT
353239 AATTAAGTCCC
1 AATTAAGTCCC
353250 CAAAATTCAA
Statistics
Matches: 66, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
27 17 0.26
28 21 0.32
29 28 0.42
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.47
Consensus pattern (28 bp):
AATTAAGTCCCTAAAGTTCTATTTTTTT
Found at i:354713 original size:29 final size:29
Alignment explanation
Indices: 354679--354735 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
354669 AACGTATGTC
354679 TTTCGTTCTAGTTT-AGTACCTAACGTTTG
1 TTTCGTTCTAGTTTGA-TACCTAACGTTTG
*
354708 TTTCGTTCTAGTTTGATGCCTAACGTTT
1 TTTCGTTCTAGTTTGATACCTAACGTTT
354736 CATTTCGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.16, C:0.18, G:0.18, T:0.49
Consensus pattern (29 bp):
TTTCGTTCTAGTTTGATACCTAACGTTTG
Found at i:354847 original size:2 final size:2
Alignment explanation
Indices: 354840--354868 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
354830 AATTTAAAAT
354840 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
354869 TAAAAAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:355282 original size:2 final size:2
Alignment explanation
Indices: 355275--355300 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
355265 GTGTTTTCTT
355275 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
355301 ATTTTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:355537 original size:31 final size:31
Alignment explanation
Indices: 355499--355576 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
355489 TATTTAACCC
*
355499 TTAAATAAAAATGAAAATGAACACGTCTTAG
1 TTAAATAAAAATGAAAATGAACACATCTTAG
* **
355530 TTAAATAAAAATGAAAGTGGCCACATCTTAG
1 TTAAATAAAAATGAAAATGAACACATCTTAG
355561 TTAAATAAAAAT-AAAA
1 TTAAATAAAAATGAAAA
355577 GTGACCATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 3 0.07
31 39 0.93
ACGTcount: A:0.54, C:0.09, G:0.12, T:0.26
Consensus pattern (31 bp):
TTAAATAAAAATGAAAATGAACACATCTTAG
Found at i:355921 original size:18 final size:19
Alignment explanation
Indices: 355887--355924 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
355877 GAGTATAAGC
355887 ACAAATTATCAATAAAAAAT
1 ACAAATTAT-AATAAAAAAT
355907 ACAAATTAT-ATAAAAAAT
1 ACAAATTATAATAAAAAAT
355925 TAAAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
20 9 0.50
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (19 bp):
ACAAATTATAATAAAAAAT
Found at i:355930 original size:18 final size:17
Alignment explanation
Indices: 355898--355935 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
355888 CAAATTATCA
355898 ATAAAAAATACAAATTAT
1 ATAAAAAATACAAATT-T
355916 ATAAAAAATTA-AAATTT
1 ATAAAAAA-TACAAATTT
355933 ATA
1 ATA
355936 GAAGATGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 13 0.68
19 2 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAAATACAAATTT
Found at i:356105 original size:18 final size:18
Alignment explanation
Indices: 356082--356117 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
356072 TCTCTAGAGG
356082 ATAATAACTTGTCAGCAT
1 ATAATAACTTGTCAGCAT
356100 ATAATAACTTGTCAGCAT
1 ATAATAACTTGTCAGCAT
356118 CAGTCCATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
ATAATAACTTGTCAGCAT
Found at i:360506 original size:20 final size:20
Alignment explanation
Indices: 360477--360515 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
360467 TAATCTTATT
360477 CACTGATAATCTTACATTCA
1 CACTGATAATCTTACATTCA
*
360497 CACTGGTAATCTTACATTC
1 CACTGATAATCTTACATTC
360516 CGTGAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (20 bp):
CACTGATAATCTTACATTCA
Found at i:364321 original size:19 final size:19
Alignment explanation
Indices: 364253--364322 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
364243 ATACCCTTCT
364253 ATATATTATTTTTTTCAATTAA
1 ATATATTA-TTTTTT-AA-TAA
* *
364275 ATAT-TTATTTTTTATTGA
1 ATATATTATTTTTTAATAA
* * *
364293 AGAAAATATTTTTTAATAA
1 ATATATTATTTTTTAATAA
364312 ATATATTATTT
1 ATATATTATTT
364323 CAGGTCGGTT
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
18 4 0.11
19 20 0.54
20 6 0.16
21 3 0.08
22 4 0.11
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (19 bp):
ATATATTATTTTTTAATAA
Found at i:372737 original size:25 final size:27
Alignment explanation
Indices: 372702--372752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
372692 TTGAAAATCC
*
372702 AGAATCGGAGTA-TAATTTCAAAGTGT
1 AGAATCGGAGTAGTAATTGCAAAGTGT
372728 AGAATC-GAGTAGTAATTGCAAAGTG
1 AGAATCGGAGTAGTAATTGCAAAGTG
372753 ATTGATCTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
AGAATCGGAGTAGTAATTGCAAAGTGT
Found at i:378247 original size:229 final size:227
Alignment explanation
Indices: 377842--378290 Score: 783
Period size: 229 Copynumber: 2.0 Consensus size: 227
377832 GTAAATTATC
* * *
377842 TATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGT
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
*
377907 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
66 TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
377972 TGTGTAAATGAAATTATTAAATTAATATTGTAGGAGGAAAACATGAAACACTATTAAAAAAATTG
131 TGTGTAAATGAAATTATTAAATTAATATTGTAGGAGGAAAACATGAAACACTATTAAAAAAATTG
378037 AAACATAAATTACATAACTTTCAAAAAAGTATA
196 AAACATAAATTACATAACTTT-AAAAAAGTATA
*
378070 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTTGAAAACATATTTATTATTATATTTGG
1 TATCATTTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTATATTTAG
*
378135 TTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAAT-ATAAT
65 TTAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT-AT
* * *
378199 TTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAATAAAT
129 TTTGTGTAAATGAAATTATTAAATTAATATTGTAGGAGGAAAACATGAAACACTATTAAAAAAAT
378264 TGAAACATAAATTACATAACTTTAAAA
194 TGAAACATAAATTACATAACTTTAAAA
378291 GCAGTTTTAA
Statistics
Matches: 210, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
228 42 0.20
229 168 0.80
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.39
Consensus pattern (227 bp):
TATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTATATTTAGT
TAATATTGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGAGGAAAACATGAAACACTATTAAAAAAATTG
AAACATAAATTACATAACTTTAAAAAAGTATA
Found at i:378543 original size:20 final size:19
Alignment explanation
Indices: 378520--378566 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
378510 CGATATAACA
378520 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
378540 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
378560 GGTAAAA
1 GGTAAAA
378567 TGATACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:378568 original size:17 final size:18
Alignment explanation
Indices: 378524--378571 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
378514 ATAACAGGTA
378524 AAAATATGATAAAACCGGT
1 AAAA-ATGATAAAACCGGT
378543 AACAAAATGATAAAACCGGT
1 -A-AAAATGATAAAACCGGT
378563 -AAAATGATA
1 AAAAATGATA
378572 CCGGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.33
20 15 0.56
21 3 0.11
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (18 bp):
AAAAATGATAAAACCGGT
Found at i:380848 original size:21 final size:21
Alignment explanation
Indices: 380801--380865 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
380791 AAGACAATCA
* *
380801 AGAGTCGAAGAGAAACTTGATC
1 AGAGTCGAAGAGAAACTCGA-G
*
380823 A-AGTCGTAGAGAAACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
* *
380843 AGAGTCGAAGATACACTCGAG
1 AGAGTCGAAGAGAAACTCGAG
380864 AG
1 AG
380866 GAATAAGGGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTCGAG
Found at i:380941 original size:33 final size:33
Alignment explanation
Indices: 380899--380964 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
380889 AAATAGATGG
*
380899 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
380932 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
380965 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:382004 original size:19 final size:19
Alignment explanation
Indices: 381980--382028 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
381970 AATGTCGAGT
381980 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
381999 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
382018 TATTTTTGTAT
1 TAATTTTGTAT
382029 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:382915 original size:198 final size:199
Alignment explanation
Indices: 382149--383320 Score: 2267
Period size: 199 Copynumber: 5.9 Consensus size: 199
382139 CAATATGGCC
* *
382149 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
382214 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
382279 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
382344 TGGAA
195 TGGAA
382349 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
382414 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
382479 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTATCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
382544 GGAA
196 GGAA
382548 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
382613 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
382678 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCATAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
382743 GGAA
196 GGAA
382747 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
382811 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
382876 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTCCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
382941 GGAA
196 GGAA
382945 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
383010 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
383074 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
383139 GGAA
196 GGAA
383143 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
383208 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACTGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
383273 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
383321 AATTTAAATA
Statistics
Matches: 961, Mismatches: 9, Indels: 5
0.99 0.01 0.01
Matches are distributed among these distances:
198 393 0.41
199 534 0.56
200 34 0.04
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (199 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGAA
Found at i:382984 original size:397 final size:398
Alignment explanation
Indices: 382149--383320 Score: 2267
Period size: 397 Copynumber: 2.9 Consensus size: 398
382139 CAATATGGCC
* *
382149 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAAGTGTCAATCCCAAAATCATCGAAC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAAGTGTCGATCCCAAAATCATCGAAC
382214 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGA
382279 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAA
382344 TGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
195 TGGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
382409 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
260 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTAT
* *
382474 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTATCGATACTTTTTTCCCAGAA
325 GAGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTCCCCAGAA
382539 TGAATGGAA
390 TGAATGGAA
382548 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
382613 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
382678 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCATAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
382743 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
382807 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
382872 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTCCCCAGAAT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTCCCCAGAAT
382937 GAATGGAA
391 GAATGGAA
382945 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
383010 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACC-GTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
383074 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
383139 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
196 GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
*
383204 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACTGGTTTTATG
261 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
383269 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
326 AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACT
383321 AATTTAAATA
Statistics
Matches: 765, Mismatches: 7, Indels: 4
0.99 0.01 0.01
Matches are distributed among these distances:
396 129 0.17
397 405 0.53
398 197 0.26
399 34 0.04
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.31
Consensus pattern (398 bp):
AACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTTCCCAGAATGAAT
GGAAAACAAGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATG
AGAGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATACTTTTTCCCCAGAAT
GAATGGAA
Found at i:384801 original size:3 final size:3
Alignment explanation
Indices: 384793--384867 Score: 69
Period size: 3 Copynumber: 25.0 Consensus size: 3
384783 TGAAGCTGAC
* * * ** * * *
384793 GAT GAT GAT GAT GAT GAC GAT GAA GCT GGC GAT GAA GAT GAT GAC GAC
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
384841 GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
384868 CCAAACAAGT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:384817 original size:30 final size:30
Alignment explanation
Indices: 384781--384867 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
384771 GGTCGCAGAA
*
384781 GATGAAGCTGACGATGATGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGATGATGAC
* *
384811 GATGAAGCTGGCGATGAAGATGATGACGAC
1 GATGAAGCTGACGATGAAGATGATGATGAC
* * *
384841 GATGATGATGATGATGAAGATGATGAT
1 GATGAAGCTGACGATGAAGATGATGAT
384868 CCAAACAAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.34, C:0.08, G:0.34, T:0.23
Consensus pattern (30 bp):
GATGAAGCTGACGATGAAGATGATGATGAC
Found at i:386372 original size:183 final size:183
Alignment explanation
Indices: 386064--386574 Score: 968
Period size: 183 Copynumber: 2.8 Consensus size: 183
386054 CAAAGTTTTC
* * * * *
386064 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGAAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
*
386129 AAAAAAGTGTCGACATTTACACATCGGAACCCATATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
386194 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTTTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTTTACAACCTTTATCG
386247 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
386312 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
386377 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTTTACAACCTTTATCG
131 AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTTTACAACCTTTATCG
386430 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
1 ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
386495 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
66 AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
386560 AACCGGTATAAAAAT
131 AACCGGTATAAAAAT
386575 GTGTCGATAC
Statistics
Matches: 322, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 322 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (183 bp):
ACACTTTCTAATATTGTGTCGGTACTTTATGTTCAGATTGGAAGAAAAATGTGTCGATACCATTT
AAAAAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAAAATACCGGTTTTATGAGCGAATAGGTTTACAACCTTTATCG
Found at i:386603 original size:22 final size:23
Alignment explanation
Indices: 386570--386612 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
386560 AACCGGTATA
386570 AAAATGTGTCGATACCTTTTTAT
1 AAAATGTGTCGATACCTTTTTAT
*
386593 AAAA-GTGTCGATACTTTTTT
1 AAAATGTGTCGATACCTTTTT
386613 CACTGTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (23 bp):
AAAATGTGTCGATACCTTTTTAT
Found at i:389749 original size:23 final size:23
Alignment explanation
Indices: 389718--389781 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
389708 ATAGGTAAAC
*
389718 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
389741 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
389764 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
389782 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:389788 original size:23 final size:23
Alignment explanation
Indices: 389718--389790 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
389708 ATAGGTAAAC
* **
389718 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
389741 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
389764 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
389787 ATAT
1 ATAT
389791 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:390177 original size:23 final size:23
Alignment explanation
Indices: 390146--390209 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
390136 ATAGGTAAAC
*
390146 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
390169 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
390192 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
390210 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:390216 original size:23 final size:23
Alignment explanation
Indices: 390146--390218 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
390136 ATAGGTAAAC
* **
390146 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
390169 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
390192 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
390215 ATAT
1 ATAT
390219 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:390521 original size:25 final size:25
Alignment explanation
Indices: 390487--390537 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
390477 ACAACAAATC
*
390487 AATTAAACATTGTTGTGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
*
390512 AATTGAACATTGTTATGGGTACATT
1 AATTAAACATTGTTATGGGTACATT
390537 A
1 A
390538 TTTGGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTAAACATTGTTATGGGTACATT
Found at i:390807 original size:18 final size:18
Alignment explanation
Indices: 390786--390822 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
390776 GTAATTGGAG
390786 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
390804 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
390822 T
1 T
390823 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:390830 original size:24 final size:24
Alignment explanation
Indices: 390778--390824 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
390768 TTTCATATGT
* *
390778 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
390802 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
390825 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:391124 original size:39 final size:39
Alignment explanation
Indices: 391081--391206 Score: 234
Period size: 39 Copynumber: 3.2 Consensus size: 39
391071 TCCGATGCTC
* *
391081 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
391120 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
391159 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
391198 ATCAAAATC
1 ATCAAAATC
391207 TACAACTTGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.48, C:0.21, G:0.13, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAATCTCATATGATGCCAAGCAAAAGGAA
Found at i:391640 original size:23 final size:23
Alignment explanation
Indices: 391609--391672 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
391599 ATAGGTAAAC
*
391609 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGCCCTT
* **
391632 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCCCTT
391655 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
391673 TGGTTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCCCTT
Found at i:391679 original size:23 final size:23
Alignment explanation
Indices: 391609--391681 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
391599 ATAGGTAAAC
* **
391609 ATATGATGTAATAGGTAGCCCTT
1 ATATAATGTAATAGGTAGTGCTT
*
391632 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
391655 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
391678 ATAT
1 ATAT
391682 TGTAAAGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:392718 original size:17 final size:18
Alignment explanation
Indices: 392698--392736 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
392688 TAAGTTTTAT
*
392698 ATAAAATTT-CAATTCTA
1 ATAAAATTTAAAATTCTA
*
392715 ATAAATTTTAAAATTCTA
1 ATAAAATTTAAAATTCTA
392733 ATAA
1 ATAA
392737 TAAAGTACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAAAATTTAAAATTCTA
Found at i:397673 original size:24 final size:24
Alignment explanation
Indices: 397628--397675 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
397618 AAAATTATAT
* *
397628 TAAAATTTTAAGAATATAAAATTA
1 TAAAATCTTAAGAATACAAAATTA
*
397652 TAAAATCTTAAGAATACGAAATTA
1 TAAAATCTTAAGAATACAAAATTA
397676 AATAATTCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
TAAAATCTTAAGAATACAAAATTA
Found at i:402673 original size:42 final size:42
Alignment explanation
Indices: 402627--402743 Score: 207
Period size: 42 Copynumber: 2.8 Consensus size: 42
402617 AGTTCGCGAA
* *
402627 GCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTT
1 GCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATT
402669 GCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATT
1 GCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATT
*
402711 GCGATAGTCCATGTTCGCGTTGCGATTTATTCC
1 GCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
402744 TCGTTGCGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (42 bp):
GCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCATT
Found at i:402733 original size:21 final size:21
Alignment explanation
Indices: 402598--402736 Score: 115
Period size: 21 Copynumber: 6.6 Consensus size: 21
402588 GATTTACATA
* *
402598 TTCGCGATGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
** *
402619 TTCGCGAAGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
402640 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCCAAG
402663 TT--CGTTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
402682 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCCAAG
* *
402705 TT--CATTGCGATAGTCCATG
1 TTCGCGTTGCGATAGTCCAAG
402724 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
402737 TTATTCCTCG
Statistics
Matches: 95, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
19 17 0.18
21 61 0.64
23 17 0.18
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:403474 original size:21 final size:21
Alignment explanation
Indices: 403450--403523 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
403440 TTTGGAATAA
403450 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* * **
403471 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTCGACT
*
403490 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
*
403511 ATCGCAATGCGAA
1 ATCGCAACGCGAA
403524 TATGTAAATC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
19 15 0.36
21 27 0.64
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:403606 original size:21 final size:21
Alignment explanation
Indices: 403580--403634 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
403570 AATTTGGAAA
*
403580 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
403601 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTCGACT
403622 ATCGCAATGCGAA
1 ATCGCAATGCGAA
403635 TATATAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:403653 original size:90 final size:90
Alignment explanation
Indices: 403479--403657 Score: 229
Period size: 90 Copynumber: 2.0 Consensus size: 90
403469 CTATCGCAAC
* *
403479 GAATTTGGAAAATCGCAACGCGAACTTTGACTATCGCAATGCGAATATGTAAATCGCAATGCGAT
1 GAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAATGCGAATATGGAAATCGCAATGCGAT
* * **
403544 AGTCGAAGTTCGCGTTGCGATAGTT
66 AGTAGAAGATCGCAATGCGATAGTT
*
403569 GAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAATGCGAACT-TGGACTATCGCAATGCG
1 GAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAATGCGAA-TATGGA-AATCGCAATGCG
* *
403633 AATA-TATAA-ATCGTAATGCGATAGT
64 -ATAGTAGAAGATCGCAATGCGATAGT
403658 AGAAGTTCGC
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
90 59 0.77
91 15 0.19
92 3 0.04
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (90 bp):
GAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAATGCGAATATGGAAATCGCAATGCGAT
AGTAGAAGATCGCAATGCGATAGTT
Found at i:403684 original size:111 final size:111
Alignment explanation
Indices: 403490--403785 Score: 504
Period size: 111 Copynumber: 2.7 Consensus size: 111
403480 AATTTGGAAA
* *
403490 ATCGCAACGCGAACTTTGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
* *
403555 GCGTTGCGATAGTTGAATTTGGAAAATCGCAACGCGAACTTCG-ACT
66 GCGTTGCGATAGTCGAATTTGGAAAATCGCAACGCAAACTT-GAACT
* * *
403601 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATATAAATCGTAATGCGATAGTAGAAGTTC
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
*
403666 GCTTTGCGATAGTCGAATTTGGAAAATCGCAACGCAAACTTGAACT
66 GCGTTGCGATAGTCGAATTTGGAAAATCGCAACGCAAACTTGAACT
403712 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
1 ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
403777 GCGTTGCGA
66 GCGTTGCGA
403786 ATCTGGAAAC
Statistics
Matches: 172, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
110 1 0.01
111 171 0.99
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (111 bp):
ATCGCAATGCGAACTTGGACTATCGCAATGCGAATATGTAAATCGCAATGCGATAGTCGAAGTTC
GCGTTGCGATAGTCGAATTTGGAAAATCGCAACGCAAACTTGAACT
Found at i:403740 original size:21 final size:21
Alignment explanation
Indices: 403691--403745 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
403681 AATTTGGAAA
* *
403691 ATCGCAACGCAAACTTGAACT
1 ATCGCAATGCGAACTTGAACT
*
403712 ATCGCAATGCGAACTTGGACT
1 ATCGCAATGCGAACTTGAACT
403733 ATCGCAATGCGAA
1 ATCGCAATGCGAA
403746 TATGTAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAATGCGAACTTGAACT
Found at i:404749 original size:24 final size:24
Alignment explanation
Indices: 404717--404766 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
404707 ATTTTTTAGA
*
404717 TTTTTAATA-GTGTTTTTAATAAAT
1 TTTTTAATATGTGATTTTAA-AAAT
*
404741 TTTTTAATATTTGATTTTAAAAAT
1 TTTTTAATATGTGATTTTAAAAAT
404765 TT
1 TT
404767 AAAATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTTTAATATGTGATTTTAAAAAT
Found at i:423423 original size:63 final size:60
Alignment explanation
Indices: 423356--423484 Score: 136
Period size: 63 Copynumber: 2.1 Consensus size: 60
423346 AGGCATTTAT
* *
423356 TATCTTTTTAACACTGAAT-ATTAAAGATAATTATATACTTTT-ATATATTTCAAATTAAAATAA
1 TATCTATTTAACACTGAATGA-TAAAAATAATT-TAT-CTTTTGA-ATATTTCAAATTAAAAT-A
*** * *
423419 TATCTATTTAAGTTTGAATGATAAAAATAGTTTATCTTTTGAGTATTTCAAATTAAAATA
1 TATCTATTTAACACTGAATGATAAAAATAATTTATCTTTTGAATATTTCAAATTAAAATA
423479 TATCTA
1 TATCTA
423485 CAACATCCTA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
60 7 0.12
61 21 0.37
62 4 0.07
63 24 0.42
64 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.06, T:0.45
Consensus pattern (60 bp):
TATCTATTTAACACTGAATGATAAAAATAATTTATCTTTTGAATATTTCAAATTAAAATA
Found at i:423945 original size:48 final size:49
Alignment explanation
Indices: 423873--423974 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 49
423863 ACTAATCTAG
423873 AGCAGCATAACAATTTCATAAGCACAAGCATGATGAAGACATGATACTA
1 AGCAGCATAACAATTTCATAAGCACAAGCATGATGAAGACATGATACTA
*
423922 AGCAG-ATAAGAATTTCATAAGCACAAGCATGATGAAGACATGATACTA
1 AGCAGCATAACAATTTCATAAGCACAAGCATGATGAAGACATGATACTA
423970 AGCAG
1 AGCAG
423975 TAGGTACATA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 47 0.90
49 5 0.10
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.20
Consensus pattern (49 bp):
AGCAGCATAACAATTTCATAAGCACAAGCATGATGAAGACATGATACTA
Found at i:435023 original size:21 final size:20
Alignment explanation
Indices: 435003--435140 Score: 89
Period size: 20 Copynumber: 6.8 Consensus size: 20
434993 ATTCGCGTTG
*
435003 CATTTCGCGTTGCGATAGTTG
1 CATTTCGCGTTGCGAT-GTTC
* ** * *
435024 AAAATCACGTTGCGATTTTC
1 CATTTCGCGTTGCGATGTTC
*
435044 CATTTCGCGTTGCGATAGTTG
1 CATTTCGCGTTGCGAT-GTTC
* ** * *
435065 AAAATCGCTTTGCGATTTTC
1 CATTTCGCGTTGCGATGTTC
*
435085 CATTTCGCGTTGCGATAGTCTA
1 CATTTCGCGTTGCGAT-GT-TC
* *
435107 CA-GTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATGTTC
*
435126 CATTTGGCGTTGCGA
1 CATTTCGCGTTGCGA
435141 AACGGAAAAT
Statistics
Matches: 84, Mismatches: 29, Indels: 9
0.69 0.24 0.07
Matches are distributed among these distances:
19 3 0.04
20 39 0.46
21 39 0.46
22 3 0.04
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (20 bp):
CATTTCGCGTTGCGATGTTC
Found at i:435050 original size:41 final size:41
Alignment explanation
Indices: 435003--435140 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 41
434993 ATTCGCGTTG
*
435003 CATTTCGCGTTGCGATAGTTGAAAATCACGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
*
435044 CATTTCGCGTTGCGATAGTTGAAAATCGCTTTGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
* *
435085 CATTTCGCGTTGCGATAGTCT-ACAGTCGCGTTGCGATTTTC
1 CATTTCGCGTTGCGATAGT-TGAAAATCGCGTTGCGATTTTC
*
435126 CATTTGGCGTTGCGA
1 CATTTCGCGTTGCGA
435141 AACGGAAAAT
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 89 0.99
42 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC
Found at i:435056 original size:20 final size:20
Alignment explanation
Indices: 435031--435140 Score: 96
Period size: 20 Copynumber: 5.4 Consensus size: 20
435021 TTGAAAATCA
435031 CGTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* ** **
435051 CGTTGCGATAGTTGAAAATCG
1 CGTTGCGAT-TTTCCATTTCG
*
435072 CTTTGCGATTTTCCATTTCG
1 CGTTGCGATTTTCCATTTCG
* * *
435092 CGTTGCGATAGTCTACA-GTCG
1 CGTTGCGAT--TTTCCATTTCG
*
435113 CGTTGCGATTTTCCATTTGG
1 CGTTGCGATTTTCCATTTCG
435133 CGTTGCGA
1 CGTTGCGA
435141 AACGGAAAAT
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
19 4 0.06
20 33 0.49
21 26 0.39
22 4 0.06
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (20 bp):
CGTTGCGATTTTCCATTTCG
Found at i:435196 original size:20 final size:20
Alignment explanation
Indices: 435171--435325 Score: 134
Period size: 20 Copynumber: 7.6 Consensus size: 20
435161 ACTGTAGACT
*
435171 ATCGCAACGCGAAACGGAAA
1 ATCGCAACGCGAAATGGAAA
* **
435191 ATCGCAACGCG-ACTGTAGACT
1 ATCGCAACGCGAAATG--GAAA
*
435212 ATCGCAACGCAAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
** ** *
435232 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
435253 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
* **
435273 ATCGCAACGCG-ACTGTAGACT
1 ATCGCAACGCGAAATG--GAAA
435294 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
435314 ATCGCAACGCGA
1 ATCGCAACGCGA
435326 TTTTCAACTA
Statistics
Matches: 103, Mismatches: 25, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
19 5 0.05
20 52 0.50
21 40 0.39
22 6 0.06
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:435217 original size:21 final size:21
Alignment explanation
Indices: 435149--435305 Score: 96
Period size: 21 Copynumber: 7.6 Consensus size: 21
435139 GAAACGGAAA
*
435149 ATCGCAACGACAACTGTAGACT
1 ATCGCAACG-CGACTGTAGACT
**
435171 ATCGCAACGCGAAAC-G--GAAA
1 ATCGCAACGCG--ACTGTAGACT
435191 ATCGCAACGCGACTGTAGACT
1 ATCGCAACGCGACTGTAGACT
* * **
435212 ATCGCAACGCAAAATG--GAAA
1 ATCGCAACGC-GACTGTAGACT
* *
435232 ATCGCAACGCGATTTTCA-ACT
1 ATCGCAACGCGACTGT-AGACT
* **
435253 ATCGCAACGCGAAATG--GAAA
1 ATCGCAACGCG-ACTGTAGACT
435273 ATCGCAACGCGACTGTAGACT
1 ATCGCAACGCGACTGTAGACT
435294 ATCGCAACGCGA
1 ATCGCAACGCGA
435306 AATGGAAAAT
Statistics
Matches: 101, Mismatches: 21, Indels: 27
0.68 0.14 0.18
Matches are distributed among these distances:
18 2 0.02
19 6 0.06
20 37 0.37
21 39 0.39
22 15 0.15
23 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (21 bp):
ATCGCAACGCGACTGTAGACT
Found at i:435218 original size:41 final size:41
Alignment explanation
Indices: 435137--435350 Score: 315
Period size: 41 Copynumber: 5.2 Consensus size: 41
435127 ATTTGGCGTT
* *
435137 GCGAAACGGAAAATCGCAACGACAACTGTAGACTATCGCAAC
1 GCGAAATGGAAAATCGCAACG-CGACTGTAGACTATCGCAAC
*
435179 GCGAAACGGAAAATCGCAACGCGACTGTAGACTATCGCAAC
1 GCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAAC
* * *
435220 GCAAAATGGAAAATCGCAACGCGATTTTCA-ACTATCGCAAC
1 GCGAAATGGAAAATCGCAACGCGACTGT-AGACTATCGCAAC
435261 GCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAAC
1 GCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAAC
* *
435302 GCGAAATGGAAAATCGCAACGCGATTTTCA-ACTATCGCAAC
1 GCGAAATGGAAAATCGCAACGCGACTGT-AGACTATCGCAAC
435343 GCGAAATG
1 GCGAAATG
435351 CAACACGAAT
Statistics
Matches: 159, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
40 1 0.01
41 135 0.85
42 23 0.14
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (41 bp):
GCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAAC
Found at i:435282 original size:82 final size:82
Alignment explanation
Indices: 435168--435350 Score: 348
Period size: 82 Copynumber: 2.2 Consensus size: 82
435158 ACAACTGTAG
*
435168 ACTATCGCAACGCGAAACGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCAAAATGGAAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCAAAATGGAAAA
435233 TCGCAACGCGATTTTCA
66 TCGCAACGCGATTTTCA
*
435250 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCGAAATGGAAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCAAAATGGAAAA
435315 TCGCAACGCGATTTTCA
66 TCGCAACGCGATTTTCA
435332 ACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATG
435351 CAACACGAAT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 99 1.00
ACGTcount: A:0.37, C:0.25, G:0.21, T:0.16
Consensus pattern (82 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGTAGACTATCGCAACGCAAAATGGAAAA
TCGCAACGCGATTTTCA
Found at i:435340 original size:21 final size:21
Alignment explanation
Indices: 435232--435347 Score: 94
Period size: 21 Copynumber: 5.6 Consensus size: 21
435222 AAAATGGAAA
*
435232 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTTCAACT
* ** *
435253 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
* *
435273 ATCGCAACGCGACTGT-AGACT
1 ATCGCAACGCGAATTTCA-ACT
* ** *
435294 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGAATTTCAACT
*
435314 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAATTTCAACT
435335 ATCGCAACGCGAA
1 ATCGCAACGCGAA
435348 ATGCAACACG
Statistics
Matches: 70, Mismatches: 21, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.01
20 28 0.40
21 40 0.57
22 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (21 bp):
ATCGCAACGCGAATTTCAACT
Found at i:435406 original size:20 final size:20
Alignment explanation
Indices: 435383--435488 Score: 63
Period size: 20 Copynumber: 5.2 Consensus size: 20
435373 AGATCGCGTT
*
435383 GCGATTTCAACTATCGCAAC
1 GCGATTGCAACTATCGCAAC
* * *
435403 GCGAAATGGAA-AATCGCAAC
1 GCG-ATTGCAACTATCGCAAC
*
435423 GCGATCTCCAACTATCGCAAC
1 GCGAT-TGCAACTATCGCAAC
* * * *
435444 GCGAAATGGAA-AAACGCAAC
1 GCG-ATTGCAACTATCGCAAC
* *
435464 GCGATTTTCAACTATCGCAAT
1 GCGA-TTGCAACTATCGCAAC
435485 GCGA
1 GCGA
435489 AATGCAACGT
Statistics
Matches: 61, Mismatches: 19, Indels: 11
0.67 0.21 0.12
Matches are distributed among these distances:
19 2 0.03
20 30 0.49
21 28 0.46
22 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (20 bp):
GCGATTGCAACTATCGCAAC
Found at i:435440 original size:41 final size:41
Alignment explanation
Indices: 435390--435492 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
435380 GTTGCGATTT
*
435390 CAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTC
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
* *
435431 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATTTT
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
*
435472 CAACTATCGCAATGCGAAATG
1 CAACTATCGCAACGCGAAATG
435493 CAACGTGAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (41 bp):
CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
Found at i:435528 original size:142 final size:143
Alignment explanation
Indices: 435232--435528 Score: 474
Period size: 142 Copynumber: 2.1 Consensus size: 143
435222 AAAATGGAAA
* **
435232 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTGTAGACTATC
1 ATCGCAATGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTCCAGACTATC
*
435297 GCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGCAACACGAATT
66 GCAACGCGAAATGGAAAAACGCAACGCGATTTTCAACTATCGCAACGCGAAATGCAACACGAATT
435362 TGCGATGATGGAG
131 TGCGATGATGGAG
**
435375 ATCGCGTTGCGA-TTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCA-ACTAT
1 ATCGCAATGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGA-CTCCAGACTAT
* **
435438 CGCAACGCGAAATGGAAAAACGCAACGCGATTTTCAACTATCGCAATGCGAAATGCAACGTGAAT
65 CGCAACGCGAAATGGAAAAACGCAACGCGATTTTCAACTATCGCAACGCGAAATGCAACACGAAT
435503 TTGCGAT-AGTGGAG
130 TTGCGATGA-TGGAG
435517 ATCGCAATGCGA
1 ATCGCAATGCGA
435529 ATTAGAGATC
Statistics
Matches: 141, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
141 1 0.01
142 128 0.91
143 12 0.09
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (143 bp):
ATCGCAATGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGACTCCAGACTATC
GCAACGCGAAATGGAAAAACGCAACGCGATTTTCAACTATCGCAACGCGAAATGCAACACGAATT
TGCGATGATGGAG
Found at i:444486 original size:12 final size:12
Alignment explanation
Indices: 444469--444504 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
444459 TTCTTGGAAC
444469 TGGAGGAGGAGG
1 TGGAGGAGGAGG
444481 TGGAGGAGGAGG
1 TGGAGGAGGAGG
*
444493 TGGAGGCGGAGG
1 TGGAGGAGGAGG
444505 AAGGGAAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.22, C:0.03, G:0.67, T:0.08
Consensus pattern (12 bp):
TGGAGGAGGAGG
Found at i:445847 original size:36 final size:36
Alignment explanation
Indices: 445807--445909 Score: 197
Period size: 36 Copynumber: 2.9 Consensus size: 36
445797 ATGGTGCTGG
445807 ACATTGATACACGAATGTACCAAAGCTGATAGGATA
1 ACATTGATACACGAATGTACCAAAGCTGATAGGATA
*
445843 ACATTGATACACGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATAGGATA
445879 ACATTGATACACGAATGTACCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
445910 ATACTCAACT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
36 66 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.23
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATAGGATA
Found at i:449930 original size:4 final size:4
Alignment explanation
Indices: 449921--449946 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
449911 TTGTTTTCTC
449921 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
449947 ATTACTGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:452006 original size:31 final size:31
Alignment explanation
Indices: 451968--452026 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
451958 TTTTGAAAAG
*
451968 GGATTAATTTTATTAATAGTTGATATGGGAC
1 GGATTAATTTGATTAATAGTTGATATGGGAC
*
451999 GGATTAATTTGATTGATAGTTGATATGG
1 GGATTAATTTGATTAATAGTTGATATGG
452027 ATCGCATCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.42
Consensus pattern (31 bp):
GGATTAATTTGATTAATAGTTGATATGGGAC
Found at i:452384 original size:25 final size:25
Alignment explanation
Indices: 452345--452425 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 25
452335 TATGATGCAA
*
452345 TTCTACGCGGCACTTCGGTGCAAAT
1 TTCTACGCGGTACTTCGGTGCAAAT
*
452370 TTCTACACGGTACTTCGG-GACAAA-
1 TTCTACGCGGTACTTCGGTG-CAAAT
* *
452394 TTCTACGTGGTACTTTGGTGCAAAT
1 TTCTACGCGGTACTTCGGTGCAAAT
*
452419 TTATACG
1 TTCTACG
452426 AGCTGTGGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 20 0.43
25 27 0.57
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.32
Consensus pattern (25 bp):
TTCTACGCGGTACTTCGGTGCAAAT
Found at i:452405 original size:24 final size:24
Alignment explanation
Indices: 452343--452419 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
452333 ACTATGATGC
*
452343 AATTCTACGCGGCACTTCGGTGCA
1 AATTCTACGCGGTACTTCGGTGCA
*
452367 AATTTCTACACGGTACTTCGG-GACA
1 AA-TTCTACGCGGTACTTCGGTG-CA
* *
452392 AATTCTACGTGGTACTTTGGTGCA
1 AATTCTACGCGGTACTTCGGTGCA
452416 AATT
1 AATT
452420 TATACGAGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
24 24 0.53
25 21 0.47
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (24 bp):
AATTCTACGCGGTACTTCGGTGCA
Found at i:453737 original size:31 final size:31
Alignment explanation
Indices: 453699--453757 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
453689 TTTTGAAAAG
*
453699 GGATTAATTTTATTAATAGTTGATATGGGAC
1 GGATTAATTTGATTAATAGTTGATATGGGAC
*
453730 GGATTAATTTGATTGATAGTTGATATGG
1 GGATTAATTTGATTAATAGTTGATATGG
453758 ATCGCATCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.42
Consensus pattern (31 bp):
GGATTAATTTGATTAATAGTTGATATGGGAC
Found at i:454319 original size:15 final size:15
Alignment explanation
Indices: 454299--454529 Score: 324
Period size: 15 Copynumber: 15.5 Consensus size: 15
454289 TAATAAGGTT
*
454299 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
*
454314 ATTTATTATAAAATG
1 ATTTATTATAAAATA
454329 ATTTATTATAAAATA
1 ATTTATTATAAAATA
*
454344 ATTTATTATAAAATG
1 ATTTATTATAAAATA
454359 ATTTATTATAAAATA
1 ATTTATTATAAAATA
454374 ATTTATTATAAAATA
1 ATTTATTATAAAATA
454389 ATTTATTATAAAATA
1 ATTTATTATAAAATA
454404 ATTTATTATAAAATA
1 ATTTATTATAAAATA
454419 ATTTATTATAAAATA
1 ATTTATTATAAAATA
* *
454434 ATTTGTTTTAAAATA
1 ATTTATTATAAAATA
454449 ATTTATTATAAAATA
1 ATTTATTATAAAATA
* *
454464 AATTATTTTAAAATA
1 ATTTATTATAAAATA
* * *
454479 AATTATTATAAGATTG
1 ATTTATTATAA-AATA
*
454495 ATTTATTTTAAAATA
1 ATTTATTATAAAATA
*
454510 A-TTATT-TTAAAT-
1 ATTTATTATAAAATA
454522 ATTTATTA
1 ATTTATTA
454530 GTATTGATTG
Statistics
Matches: 194, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
12 1 0.01
13 10 0.05
14 5 0.03
15 167 0.86
16 11 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATTTATTATAAAATA
Found at i:454545 original size:18 final size:18
Alignment explanation
Indices: 454522--454578 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 18
454512 TATTTTAAAT
454522 ATTTATTAGTATTGATTG
1 ATTTATTAGTATTGATTG
* *
454540 ATTTA-T--T-TTAATTA
1 ATTTATTAGTATTGATTG
*
454554 ATTTATTAGTATGGATTG
1 ATTTATTAGTATTGATTG
454572 ATTTATT
1 ATTTATT
454579 TTAAAATATG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
14 10 0.33
15 2 0.07
17 2 0.07
18 16 0.53
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (18 bp):
ATTTATTAGTATTGATTG
Found at i:454548 original size:76 final size:79
Alignment explanation
Indices: 454314--454947 Score: 330
Period size: 75 Copynumber: 7.9 Consensus size: 79
454304 TTTTAAAATA
* * * * * *
454314 ATTTATTATAAAATGATTTATTATAA-AATAATTTATTATAAAATG-ATTTATTATAAAATAATT
1 ATTTATTTTAAAATAAATTATTATAAGATTGATTTATTATAAAATGAATTTATT-TTAAATAATT
* * *
454377 TATTA-TA--AAATA
65 TATTAGTATGGATTG
* * * * *
454389 ATTTATTATAAAATAATTTATTATAA-AATAATTTATTATAAAAT-AATTTGTTTTAAAATAATT
1 ATTTATTTTAAAATAAATTATTATAAGATTGATTTATTATAAAATGAATTTATTTT-AAATAATT
* * *
454452 TATTA-TA--AAATA
65 TATTAGTATGGATTG
* *
454464 AATTATTTTAAAATAAATTATTATAAGATTGATTTATTTTAAAAT-AA-TTATTTTAAAT-ATTT
1 ATTTATTTTAAAATAAATTATTATAAGATTGATTTATTATAAAATGAATTTATTTTAAATAATTT
*
454526 ATTAGTATTGATTG
66 ATTAGTATGGATTG
* * * *
454540 ATTTATTTT-AATTAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTA
1 ATTTATTTTAAAATAAATTATTA-TA-AGATTGATTTATTAT-AAA-AT-GA---ATTTATTTTA
454604 AATAATTTATTAGTATGGATTG
58 AATAATTTATTAGTATGGATTG
* ** * * * *
454626 ATTTATTTTAAAATATGGATTGATT-TATTATTGTAGTT-GTATAGATTG-ATTTATTTTAAATA
1 ATTTATTTTAAAATA--AATT-ATTATAAGATTG-ATTTATTATAAAATGAATTTATTTTAAATA
454688 ATTTATTAGTATGGATTG
62 ATTTATTAGTATGGATTG
* * *
454706 ATTTATTTTAAAATATAGATTGATTTATTTTAA-A-TAATTTATTAGTATGGATTG-ATTTATTT
1 ATTTATTTTAAAATA-A-ATT-A-TTA---TAAGATTGATTTATTA-TA--AAATGAATTTATTT
*
454768 TAAATAATTTATTAGTATGGATTT
56 TAAATAATTTATTAGTATGGATTG
* * * * * * *
454792 ATTTATTTT-AAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGA-TTT--ATT
1 ATTTATTTTAAAATAAATTA-TTATA-AGATTGATTTATTAT-AAA-ATGAATTTATTTTAAATA
*
454853 ATTGTAGTT-GTATGTATTG
62 ATT-TA-TTAGTATGGATTG
* * *
454872 ATTTATTTT-AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTA
1 ATTTATTTTAAAATAAATTATTA-TA-AGATTGATTTATTAT-AAA-AT-GA---ATTTATTTTA
454936 AATAATTTATTA
58 AATAATTTATTA
454948 TTATAGTTGT
Statistics
Matches: 460, Mismatches: 50, Indels: 87
0.77 0.08 0.15
Matches are distributed among these distances:
73 8 0.02
74 7 0.02
75 109 0.24
76 29 0.06
77 14 0.03
78 3 0.01
79 11 0.02
80 107 0.23
81 13 0.03
82 20 0.04
83 5 0.01
84 10 0.02
85 24 0.05
86 75 0.16
87 15 0.03
88 5 0.01
89 2 0.00
90 3 0.01
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (79 bp):
ATTTATTTTAAAATAAATTATTATAAGATTGATTTATTATAAAATGAATTTATTTTAAATAATTT
ATTAGTATGGATTG
Found at i:454562 original size:32 final size:32
Alignment explanation
Indices: 454511--454835 Score: 229
Period size: 32 Copynumber: 10.3 Consensus size: 32
454501 TTTAAAATAA
*
454511 TTATTTTAAAT-ATTTATTAGTATTGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
*
454542 TTATTTTAATTAATTTATTAGTATGGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
454574 TTA-TTT---TAA---A--A-TATGGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
454596 TTATTTTAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
** **
454628 TTATTTTAAA-ATATGGATT-G-ATTTATT-AT
1 TTATTTTAAATA-ATTTATTAGTATGGATTGAT
* * * * *
454657 TGTAGTTGTATAGATTGATTTATT--T-T-AAATAAT
1 T-TA-TT-T-TA-AATAATTTATTAGTATGGATTGAT
* * * * *
454690 TTATTAGTATGGATTGATTTATTTTAAAATATAGATTGAT
1 TTATT--T-T-AAATAATTTA--TT--AGTATGGATTGAT
454730 TTATTTTAAATAATTTATTAGTATGGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
*
454762 TTATTTTAAATAATTTATTAGTATGGATTTAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
*
454794 TTATTTTAAATAATTTATTTGTATGGATTGAT
1 TTATTTTAAATAATTTATTAGTATGGATTGAT
454826 TTATTTTAAA
1 TTATTTTAAA
454836 ATATGGATTG
Statistics
Matches: 240, Mismatches: 24, Indels: 59
0.74 0.07 0.18
Matches are distributed among these distances:
22 14 0.06
23 4 0.02
25 1 0.00
26 3 0.01
28 3 0.01
29 4 0.02
30 7 0.03
31 20 0.08
32 148 0.62
33 6 0.03
34 10 0.04
36 7 0.03
37 1 0.00
38 2 0.01
39 1 0.00
40 9 0.04
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (32 bp):
TTATTTTAAATAATTTATTAGTATGGATTGAT
Found at i:454588 original size:22 final size:22
Alignment explanation
Indices: 454563--454605 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
454553 AATTTATTAG
454563 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
454585 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
454606 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:454593 original size:54 final size:54
Alignment explanation
Indices: 454535--454947 Score: 314
Period size: 54 Copynumber: 7.5 Consensus size: 54
454525 TATTAGTATT
*
454535 GATTGATTTATTTTAATTAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
454589 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
* * * * * *
454643 GATTGATTTATTATT--GTAGTTGTA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATT-TTAAATAATT-TATTAGTATGGATTGA-TTT--AT--TTTA-AAATATG
* * * *
454701 GATTGATTTATTTT-AA-AA--TA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGA-TTT--AT--TTTA-AAATATG
*
454755 GATTGATTTATTTTAAATAATTTATTAGTATGGATTTATTTATTTT-AAATA--
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
* * * ** * * * ***
454806 -ATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATG
1 GATTGATTTATTTTAAATAATTTA--TT--AGTATGGATTGATTTA-T-TT-TA-AAATATG
*
454867 TATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
454921 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTTAAATAATTTATTA
454948 TTATAGTTGT
Statistics
Matches: 296, Mismatches: 36, Indels: 54
0.77 0.09 0.14
Matches are distributed among these distances:
50 16 0.05
52 9 0.03
53 13 0.04
54 161 0.54
55 12 0.04
56 6 0.02
57 11 0.04
58 34 0.11
59 8 0.03
60 10 0.03
62 16 0.05
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (54 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
Found at i:454696 original size:80 final size:83
Alignment explanation
Indices: 454511--454803 Score: 341
Period size: 86 Copynumber: 3.5 Consensus size: 83
454501 TTTAAAATAA
* * *
454511 TTATTTTAAAT-ATTTATTAGTATTGATTGATTTATTTTAATTAATTTATTAGTATGGATTGATT
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAA--AA--TA-TAG-ATTGATTTATT
* * * *
454575 T-AT-TTTA-AAATATGGATTGAT
60 TAATATGTATTAGTATAGATTGAT
*
454596 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTA-TT-AT-T
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTTAATAT
454658 GTAGTT-GTATAGATTGAT
66 GTA-TTAGTATAGATTGAT
454676 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTTTAAAT
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTA-TTT-AAT
* *
454741 AATTTATTAGTATGGATTGAT
64 -ATGTATTAGTATAGATTGAT
*
454762 TTATTTTAAATAATTTATTAGTATGGATTTATTTATTTTAAA
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
454804 TAATTTATTT
Statistics
Matches: 186, Mismatches: 12, Indels: 19
0.86 0.06 0.09
Matches are distributed among these distances:
79 7 0.04
80 73 0.39
81 2 0.01
82 4 0.02
84 4 0.02
85 13 0.07
86 83 0.45
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (83 bp):
TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTGATTTATTTAATAT
GTATTAGTATAGATTGAT
Found at i:454863 original size:198 final size:188
Alignment explanation
Indices: 454535--454947 Score: 684
Period size: 198 Copynumber: 2.1 Consensus size: 188
454525 TATTAGTATT
*
454535 GATTGATTTATTTTAATTAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
454600 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
66 TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
454665 TATAG-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
131 TAT-GTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
454723 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTT---TAA---A--A-TATGG
* *
454788 ATTTATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATT
56 ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATT
454853 ATTGTAGTTGTATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT
121 ATTGTAGTTGTATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAAT
*
454918 ATG
186 ATA
454921 GATTGATTTATTTTAAATAATTTATTA
1 GATTGATTTATTTTAAATAATTTATTA
454948 TTATAGTTGT
Statistics
Matches: 210, Mismatches: 4, Indels: 12
0.93 0.02 0.05
Matches are distributed among these distances:
188 41 0.20
189 3 0.01
192 3 0.01
195 1 0.00
197 2 0.01
198 160 0.76
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (188 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
TATGTATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATA
Found at i:454877 original size:80 final size:80
Alignment explanation
Indices: 454466--454932 Score: 280
Period size: 80 Copynumber: 5.7 Consensus size: 80
454456 ATAAAATAAA
* * *
454466 TTATTTTAAAATAAATTATTA-TA-AGATTGATTTATTTTAAAATA---ATT-ATTTTAAATATT
1 TTATTTT-AAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGA-TTT-ATTATT
*
454525 -TA-TTAGTATTGATTGAT
63 GTAGTT-GTATGGATTGAT
*
454542 TTATTTTAATTAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAAAT
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTA--TT--AT
*
454607 AATTTA-TTAGTATGGATTGAT
62 --TGTAGTT-GTATGGATTGAT
** ** * * *
454628 TTATTTTAAA-ATATGGATT-G-ATTTATT-ATTGTAGTTGTATAGAT-T-GATTTATTTTAAAT
1 TTATTTTAAATA-ATTTATTAGTATGGATTGATT-TA-TTTTA-AAATATGGATTGA-TTT--AT
*
454687 AATT-TA-TTAGTATGGATTGAT
59 TATTGTAGTT-GTATGGATTGAT
* * * *
454708 TTATTTT-AA-AA--TA-TAG-ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATT
1 TTATTTTAAATAATTTATTAGTATGGATTGA-TTT--AT--TTTA-AAATATGGATTGATTTA--
* *
454767 TTAAATAATTTA-TTAGTATGGATTTAT
58 TT--AT--TGTAGTT-GTATGGATTGAT
*
454794 TTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTA
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTA
*
454859 GTTGTATGTATTGAT
66 GTTGTATGGATTGAT
454874 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATT
1 TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATT
454933 TTAAATAATT
Statistics
Matches: 316, Mismatches: 32, Indels: 82
0.73 0.07 0.19
Matches are distributed among these distances:
75 12 0.04
76 17 0.05
77 22 0.07
78 4 0.01
79 6 0.02
80 106 0.34
81 10 0.03
82 7 0.02
83 9 0.03
84 14 0.04
85 13 0.04
86 71 0.22
87 7 0.02
88 2 0.01
89 2 0.01
90 2 0.01
91 5 0.02
92 7 0.02
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (80 bp):
TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTA
GTTGTATGGATTGAT
Found at i:454911 original size:22 final size:22
Alignment explanation
Indices: 454895--454937 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
454885 AATTTATTAG
454895 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
454917 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
454938 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:454997 original size:31 final size:31
Alignment explanation
Indices: 454962--455020 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
454952 AGTTGTATGG
* *
454962 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
454993 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
455021 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:475270 original size:4 final size:4
Alignment explanation
Indices: 475261--475287 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
475251 TTCAACTATG
475261 TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TAT
475288 ACATACATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:489487 original size:23 final size:23
Alignment explanation
Indices: 489461--489506 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
489451 CCTTATTTCT
489461 TTTGGAGTTCAAATACCGAAGAG
1 TTTGGAGTTCAAATACCGAAGAG
*
489484 TTTGGAGTTCAAATAGCGAAGAG
1 TTTGGAGTTCAAATACCGAAGAG
489507 GAGGGAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (23 bp):
TTTGGAGTTCAAATACCGAAGAG
Found at i:489513 original size:23 final size:23
Alignment explanation
Indices: 489464--489513 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
489454 TATTTCTTTT
***
489464 GGAGTTCAAATACCGAAGAGTTT
1 GGAGTTCAAATACCGAAGAGGAG
*
489487 GGAGTTCAAATAGCGAAGAGGAG
1 GGAGTTCAAATACCGAAGAGGAG
489510 GGAG
1 GGAG
489514 ATTAACGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.10, G:0.36, T:0.18
Consensus pattern (23 bp):
GGAGTTCAAATACCGAAGAGGAG
Found at i:490524 original size:34 final size:33
Alignment explanation
Indices: 490486--490565 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 33
490476 TGATATGTTA
*
490486 ATAAATATTGATTTAATTTGACCTTAAACCTTAG
1 ATAAATATT-ATTTAATTTGACCCTAAACCTTAG
490520 AT-AA-A-TA-TTAATTTGACCCTAAACCTTAG
1 ATAAATATTATTTAATTTGACCCTAAACCTTAG
490549 ATAAAATATTAATTTAA
1 AT-AAATATT-ATTTAA
490566 CCTATTGAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
29 23 0.59
30 1 0.03
31 3 0.08
32 2 0.05
33 3 0.08
34 3 0.08
35 4 0.10
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (33 bp):
ATAAATATTATTTAATTTGACCCTAAACCTTAG
Found at i:490531 original size:29 final size:30
Alignment explanation
Indices: 490498--490597 Score: 130
Period size: 29 Copynumber: 3.3 Consensus size: 30
490488 AAATATTGAT
490498 TTAATTTGACCTTAAACCTTAGAT-AAATA
1 TTAATTTGACCTTAAACCTTAGATAAAATA
*
490527 TTAATTTGACCCTAAACCTTAGATAAAATA
1 TTAATTTGACCTTAAACCTTAGATAAAATA
* * *
490557 TTAATTTAACCTATTGAACTTTAGATAAAATA
1 TTAATTTGACC--TTAAACCTTAGATAAAATA
*
490589 TCAATTTGA
1 TTAATTTGA
490598 TACTTAAATC
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
29 23 0.38
30 15 0.25
32 23 0.38
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (30 bp):
TTAATTTGACCTTAAACCTTAGATAAAATA
Found at i:495237 original size:21 final size:21
Alignment explanation
Indices: 495211--495250 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
495201 TACCCTAAAC
495211 ATCTAATAT-AAAACCTAAATA
1 ATCTAA-ATCAAAACCTAAATA
*
495232 ATCTAAATCTAAACCTAAA
1 ATCTAAATCAAAACCTAAA
495251 CCAAACTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (21 bp):
ATCTAAATCAAAACCTAAATA
Found at i:496278 original size:55 final size:55
Alignment explanation
Indices: 496219--496511 Score: 275
Period size: 51 Copynumber: 5.5 Consensus size: 55
496209 TGGCGGGTAT
* * ** *
496219 GCTCCCTATTCTTTCAGGGAGTATAAGACTCAAACAATCTTCGGCAAACGTGTCT
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAAACGTGTCC
*** * ** * *
496274 GCTCCCTATTTAGTCAGGGAGTATAAGACTTGAACAATCTTCAATAAAACGGGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTCAA-CAAACGTGTCC
* * *
496330 GCTCTCTATTCCTTCAGAGAGTAT-AGAACTCAGAA-AATCTTCAATAAACATGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAG-ACTCA-AACAATCTTCAACAAACGTGTCC
* * *
496385 GCTCTCTATTCCTTCAGAGAGTATAGGACT----CAATCTTTAACAAACGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAAACGTGTCC
* * *
496436 GCTCCCTATTCCTTCAGAGAGTATAGGACT----CGATCTTCATA-AAATGTGTCC
1 GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTCA-ACAAACGTGTCC
496487 GCTCCCTATTCCTTCAGAGAGTATA
1 GCTCCCTATTCCTTCAGAGAGTATA
496512 GAACTCGATC
Statistics
Matches: 204, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
51 87 0.43
52 1 0.00
55 74 0.36
56 40 0.20
57 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (55 bp):
GCTCCCTATTCCTTCAGAGAGTATAAGACTCAAACAATCTTCAACAAACGTGTCC
Found at i:496370 original size:111 final size:106
Alignment explanation
Indices: 496219--496530 Score: 262
Period size: 111 Copynumber: 2.9 Consensus size: 106
496209 TGGCGGGTAT
* * ** * *
496219 GCTCCCTATTCTTTCAGGGAGTATA-AGACTCAAACAATCTTCGGCAAACGTGTCTGCTCCCTAT
1 GCTCCCTATTCCTTCAGAGAGTATAGA-ACTCAAACAATCTTCAACAAACATGTCCGCTCCCTAT
* *
496283 TTAGTCAGGGAGTATAAGACTTGAACAATCTTCAATAAAACGGGTCC
65 TCAGTCAGAGAGTATAAGAC-T---CAATCTTCAA-AAAACGGGTCC
* * *
496330 GCTCTCTATTCCTTCAGAGAGTATAGAACTCAGAA-AATCTTCAATAAACATGTCCGCTCTCTAT
1 GCTCCCTATTCCTTCAGAGAGTATAGAACTCA-AACAATCTTCAACAAACATGTCCGCTCCCTAT
** * * * *
496394 TCCTTCAGAGAGTATAGGACTCAATCTTTAACAAACGTGTCC
65 TCAGTCAGAGAGTATAAGACTCAATCTTCAAAAAACGGGTCC
* * **
496436 GCTCCCTATTCCTTCAGAGAGTATAGGACT----CGATCTTCATA-AAATGTGTCCGCTCCCTAT
1 GCTCCCTATTCCTTCAGAGAGTATAGAACTCAAACAATCTTCA-ACAAACATGTCCGCTCCCTAT
** * *
496496 TCCTTCAGAGAGTAT-AGAACTCGATCTTCATAAAA
65 TCAGTCAGAGAGTATAAG-ACTCAATCTTCAAAAAA
496531 TGAGTTTGCT
Statistics
Matches: 168, Mismatches: 28, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
101 1 0.01
102 51 0.30
103 1 0.01
106 37 0.22
107 9 0.05
110 1 0.01
111 65 0.39
112 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (106 bp):
GCTCCCTATTCCTTCAGAGAGTATAGAACTCAAACAATCTTCAACAAACATGTCCGCTCCCTATT
CAGTCAGAGAGTATAAGACTCAATCTTCAAAAAACGGGTCC
Found at i:496532 original size:51 final size:51
Alignment explanation
Indices: 496310--496530 Score: 284
Period size: 51 Copynumber: 4.2 Consensus size: 51
496300 GACTTGAACA
* *
496310 ATCTTCAATAAAACGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCAG
1 ATCTTC-ATAAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTC-G
* * * *
496363 AAAATCTTCA-ATAAACATGTCCGCTCTCTATTCCTTCAGAGAGTATAGGACTCA
1 ---ATCTTCATA-AAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCG
* *
496417 ATCTTTA-ACAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGGACTCG
1 ATCTTCATA-AAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCG
*
496468 ATCTTCATAAAATGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCG
1 ATCTTCATAAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCG
496519 ATCTTCATAAAA
1 ATCTTCATAAAA
496531 TGAGTTTGCT
Statistics
Matches: 151, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
51 104 0.69
52 1 0.01
54 1 0.01
55 39 0.26
56 6 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (51 bp):
ATCTTCATAAAACGTGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCG
Found at i:496575 original size:37 final size:38
Alignment explanation
Indices: 496528--496601 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 38
496518 GATCTTCATA
* *
496528 AAATGAGTTTGCTTCACTATTCTTCCGTGAAGGCTTAC
1 AAATGAGTTTGCTTCACTACTCTTCCATGAAGGCTTAC
*
496566 AAATG-GTTTGCTTCATTACTCTTCCATGAAGGCTTA
1 AAATGAGTTTGCTTCACTACTCTTCCATGAAGGCTTA
496602 AGATTGACCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 28 0.85
38 5 0.15
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (38 bp):
AAATGAGTTTGCTTCACTACTCTTCCATGAAGGCTTAC
Found at i:497901 original size:31 final size:32
Alignment explanation
Indices: 497866--497928 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 32
497856 TCATCTTGAA
497866 CTCTTCTTTT-ATTTT-TAATTTTT-TTATTTTT
1 CTCTT-TTTTCATTTTCT-ATTTTTCTTATTTTT
*
497897 CTCTTTTTTCATTTTCTATTTTTCTTCTTTTT
1 CTCTTTTTTCATTTTCTATTTTTCTTATTTTT
497929 TCCTTTTCGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 4 0.14
31 16 0.57
32 8 0.29
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (32 bp):
CTCTTTTTTCATTTTCTATTTTTCTTATTTTT
Found at i:497903 original size:15 final size:16
Alignment explanation
Indices: 497865--497911 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
497855 TTCATCTTGA
497865 ACTCTTCTTTTATTTTT
1 ACTCTT-TTTTATTTTT
*
497882 AAT-TTTTTTATTTTT
1 ACTCTTTTTTATTTTT
497897 -CTCTTTTTTCATTTT
1 ACTCTTTTTT-ATTTT
497912 CTATTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 16 0.62
16 7 0.27
17 2 0.08
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (16 bp):
ACTCTTTTTTATTTTT
Found at i:497905 original size:24 final size:24
Alignment explanation
Indices: 497877--497929 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
497867 TCTTCTTTTA
*
497877 TTTTTAATTTTTTTATTTTTC-TCT
1 TTTTTAA-TTTTCTATTTTTCTTCT
*
497901 TTTTTCATTTTCTATTTTTCTTCT
1 TTTTTAATTTTCTATTTTTCTTCT
497925 TTTTT
1 TTTTT
497930 CCTTTTCGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTAATTTTCTATTTTTCTTCT
Found at i:497941 original size:23 final size:23
Alignment explanation
Indices: 497885--497944 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
497875 TATTTTTAAT
*
497885 TTTTTTATTTTTCTCTTTTTTCA
1 TTTTCTATTTTTCTCTTTTTTCA
*
497908 TTTTCTATTTTTCTTCTTTTTTCC
1 TTTTCTATTTTTC-TCTTTTTTCA
497932 TTTTCGT-TTTTTC
1 TTTTC-TATTTTTC
497945 CATCATTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 12 0.36
24 20 0.61
25 1 0.03
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTTCTATTTTTCTCTTTTTTCA
Found at i:498026 original size:9 final size:9
Alignment explanation
Indices: 497950--498040 Score: 51
Period size: 9 Copynumber: 9.9 Consensus size: 9
497940 TTTTCCATCA
*
497950 TTTTCCTTT
1 TTTTTCTTT
* *
497959 TTTCTCATT
1 TTTTTCTTT
*
497968 TTTTTCTTC
1 TTTTTCTTT
497977 TTTTTCTTCT
1 TTTTTCTT-T
497987 TTTCATT-TTT
1 TTT--TTCTTT
* *
497997 ATTATTATTT
1 -TTTTTCTTT
*
498007 TTTTTC-AT
1 TTTTTCTTT
498015 TTTTTCTTT
1 TTTTTCTTT
*
498024 TTTCTCTTT
1 TTTTTCTTT
*
498033 TATTTCTT
1 TTTTTCTT
498041 CTTCAAGTGA
Statistics
Matches: 61, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
8 7 0.11
9 41 0.67
10 7 0.11
11 4 0.07
12 2 0.03
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:504058 original size:21 final size:21
Alignment explanation
Indices: 504032--504077 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
504022 CAGTGATGTT
504032 ATTATAATCATACTGCCTCAC
1 ATTATAATCATACTGCCTCAC
*
504053 ATTATAATCGTACTGCCTCAC
1 ATTATAATCATACTGCCTCAC
504074 ATTA
1 ATTA
504078 CTGACTTCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.35
Consensus pattern (21 bp):
ATTATAATCATACTGCCTCAC
Done.