Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000963.1 Hibiscus syriacus cultivar Beakdansim tig00001925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69215

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3039--3122
34
2.3
38
82
12
104
42
10
2
44
1.52
3037--3206
75
2.4
70
79
8
164
41
10
2
45
1.53
3173--3227
27
2.2
25
87
9
76
40
5
1
52
1.35
3248--3282
2
17.5
2
100
0
70
48
0
0
51
1.00
3207--3317
55
2.1
53
88
6
161
45
6
1
45
1.39
3264--3622
38
9.4
38
88
6
473
45
8
3
42
1.52
9475--9565
42
2.2
41
90
3
146
52
19
4
23
1.64
10856--10983
42
3.0
42
87
0
184
19
24
11
44
1.84
11517--12012
252
2.0
252
93
0
857
26
22
15
35
1.94
19174--19266
47
2.0
47
87
6
134
59
6
13
20
1.57
22677--22727
25
2.0
25
85
14
68
52
0
5
41
1.25
22734--22765
16
1.9
17
93
6
57
34
0
0
65
0.93
22737--22792
23
2.5
22
77
13
60
32
1
0
66
1.03
28684--28759
36
2.1
36
92
4
127
30
19
23
26
1.98
30963--31009
2
23.5
2
100
0
94
48
0
0
51
1.00
31043--31078
12
3.0
12
87
0
54
61
2
0
36
1.11
31883--32195
30
10.6
29
83
4
207
59
12
10
17
1.61
31921--32194
60
4.6
60
89
0
361
59
12
10
16
1.60
31921--32194
90
3.1
90
87
0
388
59
12
10
16
1.60
33540--33595
3
18.7
3
88
0
85
64
3
0
32
1.11
33794--34144
131
2.7
131
85
2
452
23
17
34
25
1.96
34153--34296
66
2.2
65
83
6
175
38
15
23
22
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34446--34540
36
2.7
34
83
8
118
41
14
18
25
1.89
35723--35796
27
2.7
27
87
6
96
2
16
4
77
1.04
35714--35796
16
5.2
16
74
8
55
2
15
4
77
1.05
48850--48932
27
3.2
27
67
10
73
55
3
15
25
1.57
48840--48949
51
2.2
51
96
0
202
55
2
13
28
1.52
49053--49109
29
2.0
29
82
6
71
50
17
15
15
1.78
49049--49351
30
10.2
30
83
4
319
58
11
11
18
1.61
49028--49337
147
2.1
150
83
5
396
59
11
10
18
1.60
59981--60169
45
4.5
44
79
15
218
29
26
11
32
1.91
60060--60177
34
3.1
34
73
23
119
27
25
10
37
1.88
60015--60177
79
2.1
79
95
0
290
27
26
11
34
1.90
62688--62737
3
16.7
3
87
8
75
62
0
2
36
1.07
63569--63607
12
3.2
12
92
0
60
33
17
2
46
1.62
64556--64617
31
2.0
31
90
6
99
12
11
9
66
1.46
66517--66584
33
2.1
33
85
0
91
32
17
22
27
1.96
66700--66786
36
2.4
36
80
5
95
32
17
14
35
1.90
66848--66990
62
2.3
61
83
4
171
29
15
13
41
1.86
66959--67065
38
2.8
38
91
0
169
42
14
11
31
1.82
67097--67162
34
2.0
33
90
3
105
40
12
12
34
1.80
67095--67186
31
2.9
31
85
6
112
36
13
13
36
1.83
67292--67765
129
3.7
127
81
5
501
26
30
17
24
1.97

Tables:   1

The End!