Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 22 of 78
Found at i:4696305 original size:33 final size:33
Alignment explanation
Indices: 4696263--4696333 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
4696253 AATACTAACT
4696263 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
4696296 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
4696329 TGAAA
1 TGAAA
4696334 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:4696738 original size:20 final size:20
Alignment explanation
Indices: 4696713--4696907 Score: 232
Period size: 20 Copynumber: 9.6 Consensus size: 20
4696703 CTTTAAAAAT
4696713 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
4696733 CGCGTTGTGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
4696753 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
4696774 CGCGTTGCGATATATACGGATA
1 CGCGTTGCGAT-T-TACGGATA
*
4696796 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
4696816 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
4696836 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
4696856 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
4696876 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
4696896 CGCGTTGCGATT
1 CGCGTTGCGATT
4696908 CTGGAAAATC
Statistics
Matches: 152, Mismatches: 16, Indels: 14
0.84 0.09 0.08
Matches are distributed among these distances:
20 115 0.76
21 19 0.12
22 18 0.12
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:4698702 original size:38 final size:39
Alignment explanation
Indices: 4698626--4698722 Score: 142
Period size: 38 Copynumber: 2.5 Consensus size: 39
4698616 CTCATATAAA
*
4698626 TGTCCCGAAGGACCTATCATCCCCAAAGGATGCCATCTG
1 TGTCCCGAAGGACCTATCATCCCCAAAGGATGCAATCTG
* * *
4698665 TGTCCCGAAGGACCTGTCAT-CCCGAAGGATGTAATCTG
1 TGTCCCGAAGGACCTATCATCCCCAAAGGATGCAATCTG
*
4698703 TGTCCCGTAGGACCTATCAT
1 TGTCCCGAAGGACCTATCAT
4698723 ATGTCTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.63
39 19 0.37
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
TGTCCCGAAGGACCTATCATCCCCAAAGGATGCAATCTG
Found at i:4698939 original size:37 final size:37
Alignment explanation
Indices: 4698895--4698966 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
4698885 ATATCACATG
*
4698895 TATCACGTATTACATATTCATATGTCATTTCATATCA
1 TATCACGTATTACATATTCATATATCATTTCATATCA
*
4698932 TATCACGTATTGCATATTCATATATCATTTCATAT
1 TATCACGTATTACATATTCATATATCATTTCATAT
4698967 AGTCATATAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (37 bp):
TATCACGTATTACATATTCATATATCATTTCATATCA
Found at i:4699421 original size:35 final size:37
Alignment explanation
Indices: 4699375--4699445 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
4699365 TCATTTAGGG
4699375 GGGAATCGATA-CCCCCCA-GAGGGAATCTGTTCCCA
1 GGGAATCGATACCCCCCCAGGAGGGAATCTGTTCCCA
*
4699410 GGGAATCGATACCCCCCCAGGGGGGAATCTGTTCCC
1 GGGAATCGATACCCCCCCAGGAGGGAATCTGTTCCC
4699446 CCTGCACATA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
35 11 0.33
36 7 0.21
37 15 0.45
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (37 bp):
GGGAATCGATACCCCCCCAGGAGGGAATCTGTTCCCA
Found at i:4709114 original size:57 final size:56
Alignment explanation
Indices: 4709028--4709134 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
4709018 AATGCGTTTG
* * * *
4709028 ATGCATCGATGCACTGAGGATTTTATGAAAACATTGAATGCATTTGATGCACCAACC
1 ATGCATCGATGCACTGACGATTTTATG-AAACATAGAATGCACTTCATGCACCAACC
*
4709085 ATGCATCGATGCACTCTGACTA-TTT-TGAAACATAGAATGCACTTCATGCA
1 ATGCATCGATGCA--CTGACGATTTTATGAAACATAGAATGCACTTCATGCA
4709135 TCGATGCACT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 20 0.47
57 15 0.35
58 3 0.07
59 5 0.12
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (56 bp):
ATGCATCGATGCACTGACGATTTTATGAAACATAGAATGCACTTCATGCACCAACC
Found at i:4714959 original size:20 final size:21
Alignment explanation
Indices: 4714934--4715028 Score: 68
Period size: 23 Copynumber: 4.4 Consensus size: 21
4714924 TTGTGCTTAA
4714934 TGCATCGATACACC-T-AACAG
1 TGCATCGATACACCTTGAA-AG
* *
4714954 TGCATCGATGCATCCTTGAATG
1 TGCATCGATACA-CCTTGAAAG
* *
4714976 TGCATCGATACACCATGAAGG
1 TGCATCGATACACCTTGAAAG
* * * *
4714997 TTCACCGATGCACTCCTTGAATG
1 TGCATCGAT--ACACCTTGAAAG
4715020 TGCATCGAT
1 TGCATCGAT
4715029 GCACAAGGCC
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
20 11 0.19
21 16 0.28
22 13 0.22
23 18 0.31
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (21 bp):
TGCATCGATACACCTTGAAAG
Found at i:4715023 original size:44 final size:42
Alignment explanation
Indices: 4714934--4715028 Score: 129
Period size: 44 Copynumber: 2.2 Consensus size: 42
4714924 TTGTGCTTAA
*
4714934 TGCATCGATACACCTAACAGTGCATCGATGCATCCTTGAATG
1 TGCATCGATACACCTAACAGTGCACCGATGCATCCTTGAATG
* *
4714976 TGCATCGATACACCATGAA-GGTTCACCGATGCACTCCTTGAATG
1 TGCATCGATACACC-T-AACAGTGCACCGATGCA-TCCTTGAATG
4715020 TGCATCGAT
1 TGCATCGAT
4715029 GCACAAGGCC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
42 14 0.30
43 12 0.26
44 21 0.45
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
TGCATCGATACACCTAACAGTGCACCGATGCATCCTTGAATG
Found at i:4715049 original size:43 final size:42
Alignment explanation
Indices: 4714952--4715053 Score: 116
Period size: 44 Copynumber: 2.4 Consensus size: 42
4714942 TACACCTAAC
* *
4714952 AGTGCATCGATGCATCCTTGAATGTGCATCGATACACCATGA
1 AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAAGGA
* * * *
4714994 AGGTTCACCGATGCACTCCTTGAATGTGCATCGATGCACAAGGCC
1 A-GTGCATCGATGCA-TCCTTGAATGTGCATCGATACACAAGG-A
4715039 A-TGCATCGATGCATC
1 AGTGCATCGATGCATC
4715054 AGTCGGGTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
42 3 0.06
43 21 0.43
44 24 0.49
45 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (42 bp):
AGTGCATCGATGCATCCTTGAATGTGCATCGATACACAAGGA
Found at i:4716620 original size:21 final size:21
Alignment explanation
Indices: 4716578--4716621 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
4716568 ACTCCGGGAG
* *
4716578 CTAGTTCTTCACGAGCTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
4716599 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
4716620 CT
1 CT
4716622 CCGGCACCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.39, G:0.16, T:0.36
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:4717651 original size:20 final size:20
Alignment explanation
Indices: 4717622--4717677 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
4717612 TTTCAAAGTG
*
4717622 ATGCACCGATGCACCAATCC
1 ATGCATCGATGCACCAATCC
4717642 ATGCATCGATGCACCAATCC
1 ATGCATCGATGCACCAATCC
4717662 ATGCATCGATGCACCA
1 ATGCATCGATGCACCA
4717678 TGGAATAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCATCGATGCACCAATCC
Found at i:4717802 original size:66 final size:64
Alignment explanation
Indices: 4717707--4717831 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 64
4717697 AATGTATTTT
* * *
4717707 ATGCATCGATGCACTAAGGATTTTATGAAAATATCGAATGCATTTGATGCATCGAATGCACCAAC
1 ATGCATCGATGCACTAAGGATTTTATG-AAACATCGAATGCACTTCATGCATCG-ATGCACCAAC
4717772 C
64 C
** *
4717773 ATGCATCGATGCACTTTGGCTATTT-TGAAACATCGAATGCACTTCATGCATCGATGCAC
1 ATGCATCGATGCACTAAGGAT-TTTATGAAACATCGAATGCACTTCATGCATCGATGCAC
4717832 TCTTAGTGCA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
64 6 0.12
65 23 0.44
66 20 0.38
67 3 0.06
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (64 bp):
ATGCATCGATGCACTAAGGATTTTATGAAACATCGAATGCACTTCATGCATCGATGCACCAACC
Found at i:4717831 original size:17 final size:19
Alignment explanation
Indices: 4717803--4717851 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
4717793 TATTTTGAAA
4717803 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
4717821 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
4717840 CACCGATGCACT
1 CATCGATGCACT
4717852 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:4718941 original size:2 final size:2
Alignment explanation
Indices: 4718934--4718985 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
4718924 GCTAACATGA
4718934 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4718976 AT AT AT AT AT
1 AT AT AT AT AT
4718986 TATGAAATAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4719046 original size:116 final size:115
Alignment explanation
Indices: 4718855--4719087 Score: 414
Period size: 116 Copynumber: 2.0 Consensus size: 115
4718845 AACATGCATA
*
4718855 ATATATATATATATATTATGAAATACACAATGCATGAAAAATGTGTATATGAAATGCACAATACA
1 ATATATATATATATATTATGAAATACACAATGCACGAAAAATGTGTATATGAAATGCACAATACA
4718920 AACAGCTAACATGAATA-TATATATATATATATATATATATATATATATAT
66 AACAGCTAACATGAATAGTA-ATATATATATATATATATATATATATATAT
4718970 ATATATATATATATATTATGAAATACACAATGCACGAAAAAATGTGTATATGAAATGCACAATAC
1 ATATATATATATATATTATGAAATACACAATGCACG-AAAAATGTGTATATGAAATGCACAATAC
* *
4719035 AAACAGCTAACATGCATAGTAATATATGTATATATATATATATATATATAT
65 AAACAGCTAACATGAATAGTAATATATATATATATATATATATATATATAT
4719086 AT
1 AT
4719088 TATGAAATGC
Statistics
Matches: 113, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
115 35 0.31
116 76 0.67
117 2 0.02
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (115 bp):
ATATATATATATATATTATGAAATACACAATGCACGAAAAATGTGTATATGAAATGCACAATACA
AACAGCTAACATGAATAGTAATATATATATATATATATATATATATATAT
Found at i:4719068 original size:2 final size:2
Alignment explanation
Indices: 4719056--4719087 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4719046 ATGCATAGTA
*
4719056 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4719088 TATGAAATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4719292 original size:27 final size:27
Alignment explanation
Indices: 4719244--4719302 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
4719234 TGACCGAATT
4719244 TAAAAATAAAAAGATAATAAAACAA-A
1 TAAAAATAAAAAGATAATAAAACAACA
*
4719270 TAAAAGATAAAAGGAATAA-AAAACAACA
1 TAAAA-ATAAAAAG-ATAATAAAACAACA
4719298 TAAAA
1 TAAAA
4719303 TGTTGAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 5 0.17
27 14 0.48
28 10 0.34
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (27 bp):
TAAAAATAAAAAGATAATAAAACAACA
Found at i:4720533 original size:7 final size:7
Alignment explanation
Indices: 4720521--4720553 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
4720511 AATAATAAGC
4720521 ATATAAT
1 ATATAAT
4720528 ATATAAT
1 ATATAAT
4720535 ATATAAT
1 ATATAAT
*
4720542 ATATACT
1 ATATAAT
4720549 ATATA
1 ATATA
4720554 GTATGGACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (7 bp):
ATATAAT
Found at i:4721516 original size:85 final size:85
Alignment explanation
Indices: 4721265--4722102 Score: 1041
Period size: 85 Copynumber: 9.8 Consensus size: 85
4721255 TGATGTGTCA
* * * ** ** * *
4721265 TTGAGCTGAATGTAATCAAACTCGACA-GTTTTTGTTGACATATTGCTTTTCTCGACTTAAGTTA
1 TTGAGCTGAATGTAATCGAACTCGA-AGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTA
4721329 TGCTGTAAATTTGATATGCCT
65 TGCTGTAAATTTGATATGCCT
* * **
4721350 TTGAGCTGAATGTAATCGAACTCGAAGGTGGTCTTGGTTGACAGATATCCCTTCTTACCTTGAGT
1 TTGAGCTGAATGTAATCGAACTCGAA---GGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGT
* *
4721415 TATGATGTAAAATTGATATGCCT
63 TATGCTGTAAATTTGATATGCCT
* *
4721438 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGCTGACAGATAACCCTTCTCGCCTTGAGCTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
4721503 GCTGTAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* * * * *
4721523 TTGAGTTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAAATAGCCCTTCTCACCTTGAGCTA
1 TTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTCGCCTTGAGTTA
*
4721588 TGCTGTAAATTTGATGTGCCT
65 TGCTGTAAATTTGATATGCCT
* * * ***
4721609 TTAAGCTGAATGTAATCAAACTCAAAGGTCACGGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
4721674 GCTGTAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* * * * * *
4721694 TTGAGCTGAGTGTAATCGAACTCAAAGGT-ATTGATTGATAGATAGCCTTTCTCGCCTTGAGTTA
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTG-TTGACAGATAACCCTTCTCGCCTTGAGTTA
* *
4721758 TACTGTAAATTTGATATACCT
65 TGCTGTAAATTTGATATGCCT
* * * *
4721779 TTGAGCTGAATATAATCGAACTCGAAGGTCTTTGCTAATAGATAACCCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
*
4721844 GCTATAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* *
4721864 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTTACAGATAACCCTTCTCGCCTTGAGCTA
1 TTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTCGCCTTGAGTTA
*
4721929 TGCTGTAAATTTGATGTGCCT
65 TGCTGTAAATTTGATATGCCT
* * * *** *
4721950 TTGAGTTGAATGTAATCAAACTCGAAGATCACAGTTGAAAGATAACCCTTCTCGCCTTGAGTTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
*
4722015 GTTGTAAATTTGATATGCCT
66 GCTGTAAATTTGATATGCCT
* * * * * * * **
4722035 TTGAGTTGAGTGTAATCGAACTCGAAGGTCTTAGTTGAAAGATAGCCTTTCTTGTATTGAGTTAT
1 TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
4722100 GCT
66 GCT
4722103 ACCAATATTT
Statistics
Matches: 655, Mismatches: 90, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
84 3 0.00
85 426 0.65
86 155 0.24
88 71 0.11
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (85 bp):
TTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTAT
GCTGTAAATTTGATATGCCT
Found at i:4722097 original size:256 final size:256
Alignment explanation
Indices: 4721265--4722103 Score: 1067
Period size: 256 Copynumber: 3.3 Consensus size: 256
4721255 TGATGTGTCA
* * * * * * ** * *
4721265 TTGAGCTGAATGTAATCAAACTCGACA-GTTTTTGTTGACATATTGCTTTTCTCGACTTAAGTTA
1 TTGAGTTGAATGTAATCGAACTCGA-AGGTCTTTGTTGAAAGATAGCCCTTCTCGCCTTGAGTTA
* *
4721329 TGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTGGTCTTGGTTGACAG
65 TGCTATAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGT-CT-TTGGTTGACAG
* ** * *
4721394 ATATCCCTTCTTACCTTGAGTTATGATGTAAAATTGATATGCCTTTGAGCTGAATGTAATCGAAC
128 ATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAAC
* * * *
4721459 TCGAAGGTCTTTGCTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCT
193 TCGAAGGTCATTGTTGAAAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCT
* *
4721523 TTGAGTTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAA-ATAGCCCTTCTCACCTTGAGCT
1 TTGAGTTGAATGTAATCGAACTCGAAGGTC-TTTGTTGA-AAGATAGCCCTTCTCGCCTTGAGTT
* * * * * **
4721587 ATGCTGTAAATTTGATGTGCCTTTAAGCTGAATGTAATCAAACTCAAAGGTC-ACGGTTGACAGA
64 ATGCTATAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGGTTGACAGA
*
4721651 TAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACT
129 TAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACT
* * * * * *
4721716 CAAAGGT-ATTGATTGATAGATAGCCTTTCTCGCCTTGAGTTATACTGTAAATTTGATATACCT
194 CGAAGGTCATTG-TTGAAAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCT
* * * *
4721779 TTGAGCTGAATATAATCGAACTCGAAGGTCTTTGCT-AATAGATAACCCTTCTCGCCTTGAGTTA
1 TTGAGTTGAATGTAATCGAACTCGAAGGTCTTTGTTGAA-AGATAGCCCTTCTCGCCTTGAGTTA
* *
4721843 TGCTATAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTTACAGAT
65 TGCTATAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGGTTGACAGAT
* * * *
4721908 AACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATGTGCCTTTGAGTTGAATGTAATCAAACTC
130 AACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTC
* ** *
4721973 GAAGATCACAGTTGAAAGATAACCCTTCTCGCCTTGAGTTATGTTGTAAATTTGATATGCCT
195 GAAGGTCATTGTTGAAAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCT
* * * * **
4722035 TTGAGTTGAGTGTAATCGAACTCGAAGGTCTTAGTTGAAAGATAGCCTTTCTTGTATTGAGTTAT
1 TTGAGTTGAATGTAATCGAACTCGAAGGTCTTTGTTGAAAGATAGCCCTTCTCGCCTTGAGTTAT
4722100 GCTA
66 GCTA
4722104 CCAATATTTC
Statistics
Matches: 499, Mismatches: 73, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
253 1 0.00
254 2 0.00
255 74 0.15
256 321 0.64
257 5 0.01
258 25 0.05
259 70 0.14
260 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (256 bp):
TTGAGTTGAATGTAATCGAACTCGAAGGTCTTTGTTGAAAGATAGCCCTTCTCGCCTTGAGTTAT
GCTATAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGGTTGACAGATA
ACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCG
AAGGTCATTGTTGAAAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCT
Found at i:4722097 original size:341 final size:340
Alignment explanation
Indices: 4721313--4722100 Score: 1209
Period size: 341 Copynumber: 2.3 Consensus size: 340
4721303 CATATTGCTT
* * *
4721313 TTCTCGACTTAAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAA--
* * * * *
4721378 TGGTCTTGGTTGACAGATATCCCTTCTTACCTTGAGTTATGATGTAAAATTGATATGCCTTTGAG
64 -GGTCTT-GTTGAAAGATAGCCTTTCTTGCCTTGAGTTATGATGTAAAATTGATATACCTTTGAG
* * *
4721443 CTGAATGTAATCGAACTCGAAGGTCTTTGCTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGT
127 CTGAATATAATCGAACTCGAAGGTCTTTGCTAACAGATAACCCTTCTCGCCTTGAGCTATGCTAT
* *
4721508 AAATTTGATATGCCTTTGAGTTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAAATAGCCCT
192 AAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAAATAACCCT
*
4721573 TCTCACCTTGAGCTATGCTGTAAATTTGATGTGCCTTTAAGCTGAATGTAATCAAACTCAAAGGT
257 TCTCACCTTGAGCTATGCTGTAAATTTGATGTGCCTTTAAGCTGAATGTAATCAAACTCAAAGAT
* *
4721638 CACGGTTGACAGATAACCC
322 CACAGTTGAAAGATAACCC
*
4721657 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCAAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
* * * *
4721722 TATTGATTGATAGATAGCCTTTCTCGCCTTGAGTTAT-ACTGTAAATTTGATATACCTTTGAGCT
66 TCTTG-TTGAAAGATAGCCTTTCTTGCCTTGAGTTATGA-TGTAAAATTGATATACCTTTGAGCT
* *
4721786 GAATATAATCGAACTCGAAGGTCTTTGCTAATAGATAACCCTTCTCGCCTTGAGTTATGCTATAA
129 GAATATAATCGAACTCGAAGGTCTTTGCTAACAGATAACCCTTCTCGCCTTGAGCTATGCTATAA
* *
4721851 ATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTTACAGATAACCCTTC
194 ATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAAATAACCCTTC
* * * *
4721916 TCGCCTTGAGCTATGCTGTAAATTTGATGTGCCTTTGAGTTGAATGTAATCAAACTCGAAGATCA
259 TCACCTTGAGCTATGCTGTAAATTTGATGTGCCTTTAAGCTGAATGTAATCAAACTCAAAGATCA
4721981 CAGTTGAAAGATAACCC
324 CAGTTGAAAGATAACCC
* *
4721998 TTCTCGCCTTGAGTTATGTTGTAAATTTGATATGCCTTTGAGTTGAGTGTAATCGAACTCGAAGG
1 TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
**
4722063 TCTTAGTTGAAAGATAGCCTTTCTTGTATTGAGTTATG
66 TCTT-GTTGAAAGATAGCCTTTCTTGCCTTGAGTTATG
4722101 CTACCAATAT
Statistics
Matches: 404, Mismatches: 36, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
340 2 0.00
341 342 0.85
342 1 0.00
344 59 0.15
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (340 bp):
TTCTCGCCTTGAGTTATGCTGTAAATTTGATATGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG
TCTTGTTGAAAGATAGCCTTTCTTGCCTTGAGTTATGATGTAAAATTGATATACCTTTGAGCTGA
ATATAATCGAACTCGAAGGTCTTTGCTAACAGATAACCCTTCTCGCCTTGAGCTATGCTATAAAT
TTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTGACAAATAACCCTTCTC
ACCTTGAGCTATGCTGTAAATTTGATGTGCCTTTAAGCTGAATGTAATCAAACTCAAAGATCACA
GTTGAAAGATAACCC
Found at i:4722476 original size:3 final size:3
Alignment explanation
Indices: 4722456--4722492 Score: 56
Period size: 3 Copynumber: 11.7 Consensus size: 3
4722446 TCCAGAAATC
4722456 TCT TCAT TCT TCCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TC-T TCT T-CT TCT TCT TCT TCT TCT TCT TCT TC
4722493 ATACACGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 26 0.81
4 6 0.19
ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:4722863 original size:19 final size:20
Alignment explanation
Indices: 4722827--4722868 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
4722817 ATAATAAAGT
4722827 GTTAAAATGATAAAAGTT-A
1 GTTAAAATGATAAAAGTTGA
* * *
4722846 GTTAAAATGGTTATAGTTGA
1 GTTAAAATGATAAAAGTTGA
4722866 GTT
1 GTT
4722869 TAGTGGTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (20 bp):
GTTAAAATGATAAAAGTTGA
Found at i:4723787 original size:21 final size:21
Alignment explanation
Indices: 4723761--4723805 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4723751 GATTTCTGGG
* *
4723761 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
4723782 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
4723803 CAA
1 CAA
4723806 ACGATAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:4724655 original size:31 final size:31
Alignment explanation
Indices: 4724617--4724831 Score: 366
Period size: 31 Copynumber: 7.0 Consensus size: 31
4724607 AGGGTCGAGG
4724617 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4724648 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4724679 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4724710 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4724741 GTTTACCTATG---TTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4724769 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
4724800 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
4724831 G
1 G
4724832 GTCCTTCGGG
Statistics
Matches: 177, Mismatches: 3, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
28 28 0.16
31 148 0.84
32 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:4727681 original size:21 final size:21
Alignment explanation
Indices: 4727655--4727699 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
4727645 GATTTCTGGG
* *
4727655 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
4727676 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
4727697 CAA
1 CAA
4727700 ACGATAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:4728544 original size:31 final size:31
Alignment explanation
Indices: 4728506--4728723 Score: 384
Period size: 31 Copynumber: 7.0 Consensus size: 31
4728496 AGGGTCGAGG
4728506 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4728537 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4728568 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4728599 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
4728630 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
4728661 GTTTACCTATGTTCTTCGGGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
4728692 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
4728723 G
1 G
4728724 GTCCTTCGGG
Statistics
Matches: 181, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
31 180 0.99
32 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:4729820 original size:24 final size:21
Alignment explanation
Indices: 4729775--4729821 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 21
4729765 AATTCATATG
*
4729775 ATATGTGATAGAAGAAAAGAC
1 ATATGTGATACAAGAAAAGAC
4729796 ATATGTGATTACAAGAGAAATGAC
1 ATATGTGA-TACAAGA-AAA-GAC
4729820 AT
1 AT
4729822 GAATACATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 6 0.27
23 3 0.14
24 5 0.23
ACGTcount: A:0.49, C:0.06, G:0.21, T:0.23
Consensus pattern (21 bp):
ATATGTGATACAAGAAAAGAC
Found at i:4730573 original size:19 final size:20
Alignment explanation
Indices: 4730531--4730580 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
4730521 CTGTTCACAG
* *
4730531 TACTATTTATACAGTATCAA
1 TACTATTCATACAATATCAA
4730551 TACTATTCATACAATAT-AA
1 TACTATTCATACAATATCAA
4730570 TACTATTCATA
1 TACTATTCATA
4730581 AAAACGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (20 bp):
TACTATTCATACAATATCAA
Found at i:4732032 original size:95 final size:94
Alignment explanation
Indices: 4731810--4732067 Score: 268
Period size: 95 Copynumber: 2.7 Consensus size: 94
4731800 GGCTAGCTGG
* * * * * * * *
4731810 ATCCATAAAGCTGAGGCATTTAACCAATTTCTCTAAAGGGACAGCTCAATATCATAGTATAG-AT
1 ATCCATAAAGCAGAGGCATTTAACAAATTGCTCTAGAGGGACAACTC-A-AGC-T-TTATTGTAT
*
4731874 ATCATAATCACCTTTATCAGGCTAGCTAAATAT
62 ATCATAATCACATTTATCAGGCTAGCTAAATAT
* * * *
4731907 ATCCATAAAGCCGGGGCATTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
1 ATCCATAAAGCAGAGGCATTTAACAAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATCA
* * *
4731972 TAATCACATTTATCATGCTAGCTGAATCTT
66 TAATCACATTTATCAGGCTAGCTAAAT-AT
* * * * *
4732002 ATCCATAAAGCATAGGCGTTTAACAAATTGCTTTAGAGGGATAGCTCAAGCTTTATTGTATA-CA
1 ATCCATAAAGCAGAGGCATTTAACAAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATCA
4732066 TA
66 TA
4732068 TAATATTATA
Statistics
Matches: 137, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
93 4 0.03
94 33 0.24
95 57 0.42
96 1 0.01
97 42 0.31
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (94 bp):
ATCCATAAAGCAGAGGCATTTAACAAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATCA
TAATCACATTTATCAGGCTAGCTAAATAT
Found at i:4737838 original size:23 final size:25
Alignment explanation
Indices: 4737812--4737861 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
4737802 TAAGCATTAT
* *
4737812 AATAATGTATTA-AAT-TTAATCAA
1 AATAAGGTATTACAATATTAATAAA
4737835 AATAAGGTATTACAATATTAATAAA
1 AATAAGGTATTACAATATTAATAAA
4737860 AA
1 AA
4737862 AATAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 3 0.13
25 9 0.39
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AATAAGGTATTACAATATTAATAAA
Found at i:4742417 original size:7 final size:7
Alignment explanation
Indices: 4742407--4742448 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
4742397 CGGAAAATGG
4742407 CGGCGGA
1 CGGCGGA
4742414 CGGCGGA
1 CGGCGGA
* *
4742421 TGTCGGA
1 CGGCGGA
*
4742428 CGGCAGA
1 CGGCGGA
4742435 CGGCGGA
1 CGGCGGA
4742442 CGGCGGA
1 CGGCGGA
4742449 TGTCGAATGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.17, C:0.26, G:0.52, T:0.05
Consensus pattern (7 bp):
CGGCGGA
Found at i:4742429 original size:14 final size:14
Alignment explanation
Indices: 4742410--4742453 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
4742400 AAAATGGCGG
4742410 CGGACGGCGGATGT
1 CGGACGGCGGATGT
* * *
4742424 CGGACGGCAGACGG
1 CGGACGGCGGATGT
4742438 CGGACGGCGGATGT
1 CGGACGGCGGATGT
4742452 CG
1 CG
4742454 AATGGCAGAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.16, C:0.25, G:0.50, T:0.09
Consensus pattern (14 bp):
CGGACGGCGGATGT
Found at i:4742447 original size:28 final size:28
Alignment explanation
Indices: 4742407--4742468 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
4742397 CGGAAAATGG
*
4742407 CGGCGGACGGCGGATGTCGGACGGCAGA
1 CGGCGGACGGCGGATGTCGAACGGCAGA
*
4742435 CGGCGGACGGCGGATGTCGAATGGCAGA
1 CGGCGGACGGCGGATGTCGAACGGCAGA
4742463 CGGCGG
1 CGGCGG
4742469 CCGGAGGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.18, C:0.24, G:0.50, T:0.08
Consensus pattern (28 bp):
CGGCGGACGGCGGATGTCGAACGGCAGA
Found at i:4745650 original size:216 final size:216
Alignment explanation
Indices: 4745261--4745652 Score: 696
Period size: 216 Copynumber: 1.8 Consensus size: 216
4745251 ATTTAAGAAT
4745261 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
*
4745326 GGATCAAATTGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAT
66 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAT
* * * *
4745391 CCCTTTAAAAAGTTATGGGCTAATTAAAAAATATAATTAAGTAATAGGTATGGATCAATTTCATA
131 CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATAGGTATGGATCAATTTCATA
4745456 TGCAAATAAAATTTGGAGTAC
196 TGCAAATAAAATTTGGAGTAC
4745477 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* *
4745542 GGATCAAATCGAAATGATTTTAAATTGTGAGGTTGAAATTAATACAAAAATGTACTAAATTATA-
66 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAT
*
4745606 CTCATTTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATA
131 C-CATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATA
4745653 AGTTGAGAAA
Statistics
Matches: 167, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
215 1 0.01
216 166 0.99
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.30
Consensus pattern (216 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAT
CCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATAGGTATGGATCAATTTCATA
TGCAAATAAAATTTGGAGTAC
Found at i:4745691 original size:2 final size:2
Alignment explanation
Indices: 4745678--4745754 Score: 50
Period size: 2 Copynumber: 37.5 Consensus size: 2
4745668 AAAACAACTA
* * *
4745678 AT AT AG AT AT AT AT AT AT A- AT AT AA ACT AT AT AGT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT
* * *
4745721 AA AGT AT AT GT AT -T AT AT AT AT AA ACT AT AT AT A
1 AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A
4745755 CCATGTTTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
1 2 0.04
2 51 0.89
3 4 0.07
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (2 bp):
AT
Found at i:4745710 original size:20 final size:20
Alignment explanation
Indices: 4745676--4745754 Score: 81
Period size: 20 Copynumber: 3.9 Consensus size: 20
4745666 GTAAAACAAC
*
4745676 TAATATAGA-TATATATATA
1 TAATATAAACTATATATATA
*
4745695 TAATATAAACTATATAGTTTA
1 TAATATAAACTATATA-TATA
* *
4745716 T-ATATAAAGTATATGTATTA
1 TAATATAAACTATATATA-TA
4745736 TATATATAAACTATATATA
1 TA-ATATAAACTATATATA
4745755 CCATGTTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
19 9 0.19
20 21 0.44
21 4 0.08
22 14 0.29
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (20 bp):
TAATATAAACTATATATATA
Found at i:4745844 original size:9 final size:9
Alignment explanation
Indices: 4745822--4745911 Score: 51
Period size: 9 Copynumber: 9.8 Consensus size: 9
4745812 ACTACATAGT
4745822 TTATATAAA
1 TTATATAAA
* *
4745831 ATATATGAA
1 TTATATAAA
4745840 TTATATAAA
1 TTATATAAA
* * *
4745849 CTATACAAT
1 TTATATAAA
4745858 TTATATTATATA
1 TTATA-TA-A-A
*
4745870 TTATGTATAA
1 TTATATA-AA
4745880 TTATATATAA
1 TTATATA-AA
4745890 -TATAT--A
1 TTATATAAA
*
4745896 TTGTATAAA
1 TTATATAAA
4745905 TTATATA
1 TTATATA
4745912 GTTTATTAAT
Statistics
Matches: 61, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
6 1 0.02
7 4 0.07
9 36 0.59
10 11 0.18
11 5 0.08
12 4 0.07
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (9 bp):
TTATATAAA
Found at i:4745948 original size:15 final size:15
Alignment explanation
Indices: 4745864--4745956 Score: 52
Period size: 15 Copynumber: 6.3 Consensus size: 15
4745854 CAATTTATAT
4745864 TATATAT-TAT-GTA
1 TATATATATATAGTA
*
4745877 TA-ATTATATATAATA
1 TATA-TATATATAGTA
* * *
4745892 TATATTGTATAAATTA
1 TATA-TATATATAGTA
* *
4745908 TATAGTTTAT-TAATA
1 TATA-TATATATAGTA
* *
4745923 TAAAT-TATATAGTT
1 TATATATATATAGTA
4745937 TATATATATATAGTA
1 TATATATATATAGTA
4745952 TATAT
1 TATAT
4745957 GATTTAGGGT
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
12 1 0.02
13 8 0.13
14 11 0.18
15 23 0.38
16 18 0.30
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TATATATATATAGTA
Found at i:4745953 original size:22 final size:22
Alignment explanation
Indices: 4745899--4745955 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
4745889 ATATATATTG
*
4745899 TATAAATTATATAGTTTATTAA
1 TATAAAGTATATAGTTTATTAA
*
4745921 TATAAATTATATAGTTTA-TATA
1 TATAAAGTATATAGTTTATTA-A
*
4745943 TATATAGTATATA
1 TATAAAGTATATA
4745956 TGATTTAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 2 0.06
22 30 0.94
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
TATAAAGTATATAGTTTATTAA
Found at i:4746031 original size:20 final size:20
Alignment explanation
Indices: 4745999--4746072 Score: 76
Period size: 20 Copynumber: 3.5 Consensus size: 20
4745989 TATAAACTAC
*
4745999 ATACTATAATTTATACTTAT
1 ATACTATATTTTATACTTAT
*
4746019 ATATTATATTTTATACTATTTAT
1 ATACTATATTTTATAC---TTAT
*
4746042 ATAAACTATATTTTATATTTAT
1 AT--ACTATATTTTATACTTAT
4746064 ATACTATAT
1 ATACTATAT
4746073 ATATGAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
20 21 0.47
22 6 0.13
23 6 0.13
25 12 0.27
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (20 bp):
ATACTATATTTTATACTTAT
Found at i:4746076 original size:33 final size:33
Alignment explanation
Indices: 4745999--4746115 Score: 111
Period size: 33 Copynumber: 3.7 Consensus size: 33
4745989 TATAAACTAC
* * *
4745999 ATACTATA-ATTTATACTTATATATTATATTT-T
1 ATACTATATATATAAAC-TATATTTTATATTTAT
*
4746031 ATACTATTTATATAAACTATATTTTATATTTAT
1 ATACTATATATATAAACTATATTTTATATTTAT
* * *
4746064 ATACTATATATATGAACTATAGTTTACA--TAT
1 ATACTATATATATAAACTATATTTTATATTTAT
4746095 GA-ACTATATATATAAA-TATAT
1 -ATACTATATATATAAACTATAT
4746116 ATATACTAAG
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
30 4 0.06
31 16 0.22
32 21 0.29
33 31 0.43
ACGTcount: A:0.42, C:0.07, G:0.03, T:0.49
Consensus pattern (33 bp):
ATACTATATATATAAACTATATTTTATATTTAT
Found at i:4746117 original size:65 final size:64
Alignment explanation
Indices: 4746070--4746234 Score: 294
Period size: 65 Copynumber: 2.5 Consensus size: 64
4746060 TTATATACTA
4746070 TATATATGAACTATAGTTTACATATGAACTATATATATAAATATATATATACTAAGGTTGATATT
1 TATATATGAACTATAGTTTACATATGAACTATATATATAAATATATATATACTAA-GTTGATATT
4746135 TATATATGAACTATAGTTTACATATGAACTATATATATAAATATATATATACTAAGGTTGATATT
1 TATATATGAACTATAGTTTACATATGAACTATATATATAAATATATATATACTAA-GTTGATATT
* *
4746200 TATATATGAACTATAATTTACATATAAACTATATA
1 TATATATGAACTATAGTTTACATATGAACTATATA
4746235 GTTTATATAC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 98 1.00
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (64 bp):
TATATATGAACTATAGTTTACATATGAACTATATATATAAATATATATATACTAAGTTGATATT
Found at i:4746154 original size:18 final size:18
Alignment explanation
Indices: 4746133--4746278 Score: 69
Period size: 18 Copynumber: 8.4 Consensus size: 18
4746123 AAGGTTGATA
4746133 TTTATATATGAACTATAG
1 TTTATATATGAACTATAG
*
4746151 TTTACATATGAACTATA-
1 TTTATATATGAACTATAG
4746168 --TATATA--AA-TATA-
1 TTTATATATGAACTATAG
* * **
4746180 TATATACTAAG-GTTGATA-
1 TTTATA-TATGAACT-ATAG
*
4746198 TTTATATATGAACTATAA
1 TTTATATATGAACTATAG
* *
4746216 TTTACATATAAACTATATAG
1 TTTATATATGAAC--TATAG
*
4746236 TTTATATACT-AATTATAG
1 TTTATATA-TGAACTATAG
* *
4746254 TTTACATATAAACTATAG
1 TTTATATATGAACTATAG
*
4746272 TTGATAT
1 TTTATAT
4746279 TTACATATGA
Statistics
Matches: 99, Mismatches: 16, Indels: 26
0.70 0.11 0.18
Matches are distributed among these distances:
12 4 0.04
13 2 0.02
14 4 0.04
15 7 0.07
17 8 0.08
18 60 0.61
20 13 0.13
21 1 0.01
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (18 bp):
TTTATATATGAACTATAG
Found at i:4746240 original size:38 final size:38
Alignment explanation
Indices: 4746198--4746327 Score: 128
Period size: 38 Copynumber: 3.4 Consensus size: 38
4746188 AAGGTTGATA
*
4746198 TTTATATATGAACTATAATTTACATATAAACTATATAG
1 TTTACATATGAACTATAATTTACATATAAACTATATAG
* * * *
4746236 TTTATATACT-AATTATAGTTTACATATAAACTATAGTTGATA
1 TTTACATA-TGAACTATAATTTACATATAAACTATA--T-A-G
4746278 TTTACATATGAACTAT-A--T--ATATAAACTATATAG
1 TTTACATATGAACTATAATTTACATATAAACTATATAG
4746311 TTTACATATGAACTATA
1 TTTACATATGAACTATA
4746328 TATATAGTTT
Statistics
Matches: 78, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
33 16 0.21
34 1 0.01
35 1 0.01
37 12 0.15
38 31 0.40
39 2 0.03
40 1 0.01
41 2 0.03
42 12 0.15
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.42
Consensus pattern (38 bp):
TTTACATATGAACTATAATTTACATATAAACTATATAG
Found at i:4746318 original size:57 final size:60
Alignment explanation
Indices: 4746215--4746327 Score: 160
Period size: 57 Copynumber: 1.9 Consensus size: 60
4746205 ATGAACTATA
*
4746215 ATTTACATATAAACTATATAGTTTATATACTAATTATAGTTTACATATAAACTATAGTTGAT
1 ATTTACATATAAACTATATA--TTATAAACTAATTATAGTTTACATATAAACTATAGTTGAT
* *
4746277 ATTTACATATGAACTATATA-TATAAACT-A-TATAGTTTACATATGAACTATA
1 ATTTACATATAAACTATATATTATAAACTAATTATAGTTTACATATAAACTATA
4746328 TATATAGTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
57 21 0.44
58 1 0.02
59 7 0.15
62 19 0.40
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (60 bp):
ATTTACATATAAACTATATATTATAAACTAATTATAGTTTACATATAAACTATAGTTGAT
Found at i:4746324 original size:20 final size:20
Alignment explanation
Indices: 4746198--4746329 Score: 90
Period size: 18 Copynumber: 7.0 Consensus size: 20
4746188 AAGGTTGATA
*
4746198 TTTATATATGAACTATA-A-
1 TTTACATATGAACTATATAG
*
4746216 TTTACATATAAACTATATAG
1 TTTACATATGAACTATATAG
*
4746236 TTTATATACT-AA-T-TATAG
1 TTTACATA-TGAACTATATAG
* *
4746254 TTTACATATAAACTATAGTTGATA
1 TTTACATATGAACTATA--T-A-G
4746278 TTTACATATGAACTATATA-
1 TTTACATATGAACTATATAG
4746297 --T--ATA--AACTATATAG
1 TTTACATATGAACTATATAG
4746311 TTTACATATGAACTATATA
1 TTTACATATGAACTATATA
4746330 TATAGTTTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 32
0.71 0.05 0.25
Matches are distributed among these distances:
13 9 0.10
15 3 0.03
16 1 0.01
17 2 0.02
18 32 0.35
19 3 0.03
20 20 0.22
21 2 0.02
22 2 0.02
23 1 0.01
24 16 0.18
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.42
Consensus pattern (20 bp):
TTTACATATGAACTATATAG
Found at i:4746331 original size:24 final size:24
Alignment explanation
Indices: 4746304--4746353 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
4746294 ATATATAAAC
4746304 TATATAGTTTACATA-TGAACTATA
1 TATATAGTTTA-ATAGTGAACTATA
*
4746328 TATATAGTTTATTAGTGAACTATA
1 TATATAGTTTAATAGTGAACTATA
4746352 TA
1 TA
4746354 CACTATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (24 bp):
TATATAGTTTAATAGTGAACTATA
Found at i:4746376 original size:18 final size:18
Alignment explanation
Indices: 4746350--4746384 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4746340 TAGTGAACTA
*
4746350 TATACACTATTTATATAC
1 TATACACTATATATATAC
*
4746368 TATATACTATATATATA
1 TATACACTATATATATA
4746385 AAAACTATAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TATACACTATATATATAC
Found at i:4746384 original size:20 final size:20
Alignment explanation
Indices: 4746289--4746469 Score: 68
Period size: 20 Copynumber: 8.7 Consensus size: 20
4746279 TTACATATGA
*
4746289 ACTATATATATAAACTATAT
1 ACTATATATATATACTATAT
* * *
4746309 AGTTTACATATGA-ACTATAT
1 ACTATATATAT-ATACTATAT
*
4746329 A-TATAGTTTATTAGTGAACTATAT
1 ACTATA-TATA-TA-T--ACTATAT
*
4746353 AC-ACTATTTATATACTATAT
1 ACTA-TATATATATACTATAT
*
4746373 ACTATATATATAAAAACTATAGT
1 ACTATATATAT--ATACTATA-T
* * **
4746396 -TTATATTTATATACTACGT
1 ACTATATATATATACTATAT
* *
4746415 ACTATAGTTTATAT-TTATAT
1 ACTATA-TATATATACTATAT
*
4746435 ACTATATATTATATA-TATAA
1 ACTATATA-TATATACTATAT
*
4746455 ACTACATATACTATA
1 ACTATATATA-TATA
4746470 TAGTATAATT
Statistics
Matches: 123, Mismatches: 20, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
19 7 0.06
20 72 0.59
21 10 0.08
22 16 0.13
23 3 0.02
24 13 0.11
25 2 0.02
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (20 bp):
ACTATATATATATACTATAT
Found at i:4746400 original size:27 final size:27
Alignment explanation
Indices: 4746377--4746438 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
4746367 CTATATACTA
4746377 TATATA-TAAAAACTATAGTTTATATT
1 TATATACTAAAAACTATAGTTTATATT
***
4746403 TATATACTACGTACTATAGTTTATATT
1 TATATACTAAAAACTATAGTTTATATT
4746430 TATATACTA
1 TATATACTA
4746439 TATATTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (27 bp):
TATATACTAAAAACTATAGTTTATATT
Found at i:4746447 original size:27 final size:27
Alignment explanation
Indices: 4746388--4746447 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
4746378 ATATATAAAA
*
4746388 ACTATAGTTTATATTTATATACTACGT
1 ACTATAGTTTATATTTATATACTACAT
*
4746415 ACTATAGTTTATATTTATATACTATAT
1 ACTATAGTTTATATTTATATACTACAT
*
4746442 ATTATA
1 ACTATA
4746448 TATATAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (27 bp):
ACTATAGTTTATATTTATATACTACAT
Found at i:4746498 original size:34 final size:36
Alignment explanation
Indices: 4746430--4746498 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 36
4746420 AGTTTATATT
*
4746430 TATATACTATATATTATATATATAAACTACATATAC
1 TATATACTATATATTATACATATAAACTACATATAC
* * *
4746466 TATATAGTATA-ATT-TACATATGAACTATATATA
1 TATATACTATATATTATACATATAAACTACATATA
4746499 AAATTCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 16 0.55
35 3 0.10
36 10 0.34
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (36 bp):
TATATACTATATATTATACATATAAACTACATATAC
Found at i:4746559 original size:33 final size:33
Alignment explanation
Indices: 4746520--4746674 Score: 159
Period size: 33 Copynumber: 4.5 Consensus size: 33
4746510 CCCTAAACCC
*
4746520 TAAACTATACATTATATAGTTTATTAGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* * *
4746553 TAAACTATATGATATATATAG-ACTATATGGTATATA
1 TAAACTATA-CAT-TATATAGTTC-AT-TAGTATATA
* *
4746589 TAAACTATGCATTATATATAGTTCACTAGTATATA
1 TAAACTATACA-T-TATATAGTTCATTAGTATATA
* *
4746624 TAAACTATATACTATATAGTTCATTAGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* *
4746657 TAAACTATATAGTATATA
1 TAAACTATACATTATATA
4746675 TAAACTATAT
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
33 46 0.45
34 2 0.02
35 27 0.26
36 26 0.25
37 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (33 bp):
TAAACTATACATTATATAGTTCATTAGTATATA
Found at i:4746587 original size:51 final size:51
Alignment explanation
Indices: 4746520--4746797 Score: 301
Period size: 51 Copynumber: 5.3 Consensus size: 51
4746510 CCCTAAACCC
* *
4746520 TAAACTATACATTATATAGTTTATTAGTATATATAAACTATAT-GATATATA
1 TAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG-TATATA
* ** ** * * * *
4746571 TAGACTATATGGTATATA-TAAACTATGCATTATATATAGT-TCACTAGTATATA
1 TAAACTATATATTATATAGTTCATTA-GTA-TATATAAACTAT-A-TAGTATATA
*
4746624 TAAACTATATACTATATAGTTCATTAGTATATATAAACTATATAGTATATA
1 TAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATA
*
4746675 TAAACTATATATTATATAGTTCATTAGTATATATAACCTATATAGTATATGATATA
1 TAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAG----T-ATATA
*
4746731 TACAAACTATATATTATATAGTTCATTAGTATATATAAATTATATAGTATATA
1 T--AAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATA
4746784 TAAACTATATATTA
1 TAAACTATATATTA
4746798 ATTTATTAAT
Statistics
Matches: 190, Mismatches: 23, Indels: 28
0.79 0.10 0.12
Matches are distributed among these distances:
50 4 0.02
51 82 0.43
52 18 0.09
53 31 0.16
54 6 0.03
55 1 0.01
56 6 0.03
58 42 0.22
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (51 bp):
TAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATA
Found at i:4746703 original size:33 final size:33
Alignment explanation
Indices: 4746666--4746783 Score: 135
Period size: 33 Copynumber: 3.8 Consensus size: 33
4746656 ATAAACTATA
*
4746666 TAGTATATATAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATAGTATATAGTTCAT
*
4746699 TAGTATATATAACCTATATAGTATAT-G-----
1 TAGTATATATAAACTATATAGTATATAGTTCAT
* *
4746726 -A-TATATACAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATAGTATATAGTTCAT
*
4746757 TAGTATATATAAATTATATAGTATATA
1 TAGTATATATAAACTATATAGTATATA
4746784 TAAACTATAT
Statistics
Matches: 69, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
25 20 0.29
26 2 0.03
32 2 0.03
33 45 0.65
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (33 bp):
TAGTATATATAAACTATATAGTATATAGTTCAT
Found at i:4746722 original size:18 final size:18
Alignment explanation
Indices: 4746544--4746794 Score: 154
Period size: 18 Copynumber: 14.1 Consensus size: 18
4746534 TATAGTTTAT
4746544 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
*
4746562 T-GATATATATAGACTATA
1 TAG-TATATATAAACTATA
* *
4746580 TGGTATATATAAACTATG
1 TAGTATATATAAACTATA
* * *
4746598 CA-T-TATATATAGT-TCA
1 TAGTATATATAAACTAT-A
4746614 CTAGTATATATAAACTATA
1 -TAGTATATATAAACTATA
* *
4746633 TACTATATAGT--TC-AT-
1 TAGTATATA-TAAACTATA
4746648 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
4746666 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
**
4746684 TA-T-TATAT-AGTTCAT-
1 TAGTATATATAAACT-ATA
*
4746699 TAGTATATATAACCTATA
1 TAGTATATATAAACTATA
*
4746717 TAGTATATGATATATAC-AAA
1 TAGTATAT-ATA-A-ACTATA
* *
4746737 CTA-TATATTATATAGT-TCA
1 -TAGTATA-TATAAACTAT-A
*
4746756 TTAGTATATATAAATTATA
1 -TAGTATATATAAACTATA
4746775 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
4746793 TA
1 TA
4746795 TTAATTTATT
Statistics
Matches: 179, Mismatches: 28, Indels: 52
0.69 0.11 0.20
Matches are distributed among these distances:
14 1 0.01
15 13 0.07
16 19 0.11
17 14 0.08
18 88 0.49
19 24 0.13
20 16 0.09
21 4 0.02
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (18 bp):
TAGTATATATAAACTATA
Found at i:4746731 original size:58 final size:58
Alignment explanation
Indices: 4746669--4746782 Score: 201
Period size: 58 Copynumber: 2.0 Consensus size: 58
4746659 AACTATATAG
* *
4746669 TATATATAAACTATATATTATATAGTTCATTAGTATATATAACCTATATAGTATATGA
1 TATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGA
*
4746727 TATATACAAACTATATATTATATAGTTCATTAGTATATATAAATTATATAGTATAT
1 TATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT
4746783 ATAAACTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (58 bp):
TATATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGA
Found at i:4746818 original size:109 final size:109
Alignment explanation
Indices: 4746521--4746818 Score: 314
Period size: 109 Copynumber: 2.8 Consensus size: 109
4746511 CCTAAACCCT
* * * * **
4746521 AAACTATACATTATATAGTTTATTAGTATATATAAACTATAT-GATATATATAGACTATATGGTA
1 AAACTATATACTATATAGTTCATTAGTATATATAAACTATATAG-TATATATAAACTATATATTA
* * *
4746585 TATA-TAAACTATG--CAT-T-A--TATATAGT-TCACT-AGTATATAT
65 TATAGTTAATTA-GAACATATAACCTATATAGTAT-A-TGA-TATATAC
4746625 AAACTATATACTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTATATATTAT
1 AAACTATATACTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTATATATTAT
* * *
4746690 ATAGTTCATTAGTATATATAACCTATATAGTATATGATATATAC
66 ATAGTTAATTAGAACATATAACCTATATAGTATATGATATATAC
* *
4746734 AAACTATATATTATATAGTTCATTAGTATATATAAATTATATAGTATATATAAACTATATATTAA
1 AAACTATATACTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTATATATT-A
*
4746799 TTTA-TTAATATA-AACATATA
65 TATAGTTAAT-TAGAACATATA
4746819 TATTAATTGA
Statistics
Matches: 165, Mismatches: 17, Indels: 19
0.82 0.08 0.09
Matches are distributed among these distances:
104 61 0.37
105 5 0.03
106 2 0.01
107 1 0.01
108 1 0.01
109 78 0.47
110 16 0.10
111 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (109 bp):
AAACTATATACTATATAGTTCATTAGTATATATAAACTATATAGTATATATAAACTATATATTAT
ATAGTTAATTAGAACATATAACCTATATAGTATATGATATATAC
Found at i:4750362 original size:17 final size:17
Alignment explanation
Indices: 4750325--4750365 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
4750315 TAACCATATT
* *
4750325 AATTTAATTATTATAAT
1 AATTTAATTATCATAAG
*
4750342 AATTTAATTATCATTAG
1 AATTTAATTATCATAAG
4750359 AATTTAA
1 AATTTAA
4750366 AATAATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
AATTTAATTATCATAAG
Found at i:4750493 original size:16 final size:16
Alignment explanation
Indices: 4750459--4750494 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4750449 TGAGTTAATT
*
4750459 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
4750475 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
4750491 ACAG
1 ACAG
4750495 ATCGGGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:4754084 original size:2 final size:2
Alignment explanation
Indices: 4754077--4754114 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4754067 CCTAAATCAA
4754077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4754115 TCGAATCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4757175 original size:13 final size:13
Alignment explanation
Indices: 4757157--4757182 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4757147 TGATAGAAGC
4757157 AAAGAAAAAGAGA
1 AAAGAAAAAGAGA
4757170 AAAGAAAAAGAGA
1 AAAGAAAAAGAGA
4757183 GAGCAAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAGAGA
Found at i:4757190 original size:17 final size:16
Alignment explanation
Indices: 4757154--4757195 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
4757144 CGATGATAGA
4757154 AGCAAAG-AAAAAGAG
1 AGCAAAGAAAAAAGAG
4757169 A--AAAGAAAAAGAGAG
1 AGCAAAGAAAAA-AGAG
4757184 AGCAAAGAAAAA
1 AGCAAAGAAAAA
4757196 CAAAGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.17
14 4 0.17
15 6 0.26
17 9 0.39
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (16 bp):
AGCAAAGAAAAAAGAG
Found at i:4757212 original size:12 final size:11
Alignment explanation
Indices: 4757186--4757226 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
4757176 AAAGAGAGAG
4757186 CAAAG-AAAAA
1 CAAAGAAAAAA
4757196 CAAAGAAAAAA
1 CAAAGAAAAAA
*
4757207 CAAAAGAAAAAG
1 C-AAAGAAAAAA
4757219 CAAAGAAA
1 CAAAGAAA
4757227 CAAAAGACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 10 0.36
ACGTcount: A:0.78, C:0.10, G:0.12, T:0.00
Consensus pattern (11 bp):
CAAAGAAAAAA
Found at i:4757221 original size:33 final size:31
Alignment explanation
Indices: 4757153--4757233 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 31
4757143 GCGATGATAG
* * *
4757153 AAGCAAAG-AAAAAGAGAAAAGAAAAAGAGA
1 AAGCAAAGAAAAAAAAGAAAAAAAAAAGAAA
*
4757183 GAGCAAAGAAAAACAAAGAAAAAACAAAAGAAA
1 AAGCAAAGAAAAA-AAAGAAAAAA-AAAAGAAA
*
4757216 AAGCAAAGAAACAAAAGA
1 AAGCAAAGAAAAAAAAGA
4757234 CAAGAAACAC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
30 7 0.17
31 4 0.10
32 13 0.31
33 18 0.43
ACGTcount: A:0.74, C:0.07, G:0.19, T:0.00
Consensus pattern (31 bp):
AAGCAAAGAAAAAAAAGAAAAAAAAAAGAAA
Found at i:4758384 original size:37 final size:37
Alignment explanation
Indices: 4758329--4758714 Score: 229
Period size: 37 Copynumber: 11.1 Consensus size: 37
4758319 TTTGGTATTA
** *
4758329 TTTCTCTCGAAACAAAATTTTGTCTCACTTGAGCCATT
1 TTTCTCTTAAAAC-AAATTTTGTCTCACTTGAGACATT
*
4758367 TTTCTCTTAAAACAAATTTTATCTCACTTGAGACATT
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
** * * **
4758404 TTTCTTCGGAAAA-AAA--AT-T-TCA---AAGTTATT
1 TTTC-TCTTAAAACAAATTTTGTCTCACTTGAGACATT
* *
4758434 TTTCT-TAAAAACAAATTTTGGCTCACTTGAGACATT
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
* *
4758470 TTTCTCTTAAAATAAATTTCGTCTCACTTGAGACA-T
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
* ** *
4758506 TTTC-CTTCGAAACAAA-AAT-T-TCA----A-ACATG
1 TTTCTCTT-AAAACAAATTTTGTCTCACTTGAGACATT
*
4758535 TTTCTCTTAAAAACAAAGTTTGTCTCACTTGAGACATT
1 TTTCTCTT-AAAACAAATTTTGTCTCACTTGAGACATT
4758573 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACA-T
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
* ** *
4758609 TTTC-CTTATGAACACAAA---TATCAAAGTT--G---TT
1 TTTCTCTTA--AA-ACAAATTTTGTCTCACTTGAGACATT
*
4758640 TTTCT-TAAAAACAAATTTTGTCTCACTTGAGACATT
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
* * * * * *
4758676 TATCTCTCAAAACAAACTTCGTCTCGCTTAAGACATT
1 TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
4758713 TT
1 TT
4758715 CCAAAAATTT
Statistics
Matches: 264, Mismatches: 49, Indels: 71
0.69 0.13 0.18
Matches are distributed among these distances:
28 12 0.05
29 11 0.04
30 19 0.07
31 15 0.06
32 1 0.00
33 14 0.05
34 2 0.01
35 14 0.05
36 32 0.12
37 110 0.42
38 34 0.13
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (37 bp):
TTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
Found at i:4758505 original size:103 final size:102
Alignment explanation
Indices: 4758338--4758716 Score: 533
Period size: 103 Copynumber: 3.7 Consensus size: 102
4758328 ATTTCTCTCG
* **
4758338 AAACAAAATTTTGTCTCACTTGAGCCATTTTTCTCTTAAAACAAATTTTATCTCACTTGAGACAT
1 AAAC-AAATTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTCGTCTCACTTGAGACAT
* *
4758403 TTTTCTTCGGAAAAAAAATTTCAAAGTTATTTTTCTTAA
65 TTTCCTTC-GAAAAAAAATTTCAAAGTTGTTTTTCTTAA
* *
4758442 AAACAAATTTTGGCTCACTTGAGACATTTTTCTCTTAAAATAAATTTCGTCTCACTTGAGACATT
1 AAACAAATTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTCGTCTCACTTGAGACATT
** *
4758507 TTCCTTCGAAACAAAAATTTCAAACATGTTTCTCTTAA
66 TTCCTTCGAAA-AAAAATTTCAAAGTTGTTTTTCTTAA
* *
4758545 AAACAAAGTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTTGTCTCACTTGAGACATT
1 AAACAAATTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTCGTCTCACTTGAGACATT
* * * *
4758610 TTCCTTATGAACACAAATATCAAAGTTGTTTTTCTTAA
66 TTCCTT-CGAAAAAAAATTTCAAAGTTGTTTTTCTTAA
* * * * *
4758648 AAACAAATTTTGTCTCACTTGAGACATTTATCTCTCAAAACAAACTTCGTCTCGCTTAAGACATT
1 AAACAAATTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTCGTCTCACTTGAGACATT
4758713 TTCC
66 TTCC
4758717 AAAAATTTGA
Statistics
Matches: 245, Mismatches: 28, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
102 4 0.02
103 234 0.96
104 7 0.03
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.39
Consensus pattern (102 bp):
AAACAAATTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTCGTCTCACTTGAGACATT
TTCCTTCGAAAAAAAATTTCAAAGTTGTTTTTCTTAA
Found at i:4758610 original size:19 final size:19
Alignment explanation
Indices: 4758553--4758611 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
4758543 AAAAACAAAG
4758553 TTTGTCTCACTTGAGACAT
1 TTTGTCTCACTTGAGACAT
* *
4758572 TTT-TCT--CTTAAAACAAAT
1 TTTGTCTCACTTGAGAC--AT
4758590 TTTGTCTCACTTGAGACAT
1 TTTGTCTCACTTGAGACAT
4758609 TTT
1 TTT
4758612 CCTTATGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
16 6 0.19
18 8 0.26
19 11 0.35
21 6 0.19
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (19 bp):
TTTGTCTCACTTGAGACAT
Found at i:4758699 original size:206 final size:207
Alignment explanation
Indices: 4758338--4758716 Score: 598
Period size: 206 Copynumber: 1.8 Consensus size: 207
4758328 ATTTCTCTCG
* *
4758338 AAACAAAATTTTGTCTCACTTGAGCCATTTTTCTCTTAAAACAAATTTTATCTCACTTGAGACAT
1 AAACAAAAGTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTTATCTCACTTGAGACAT
* * *
4758403 TTTTCTTCGGAAAAAAAATTTCAAAGTTATTTTTCTTAAAAACAAATTTTGGCTCACTTGAGACA
66 TTTCCTTAGGAAAAAAAATATCAAAGTTATTTTTCTTAAAAACAAATTTTGGCTCACTTGAGACA
* * * * *
4758468 TTTTTCTCTTAAAATAAATTTCGTCTCACTTGAGACATTTTCCTTCGAAACAAAAATTTCAAACA
131 TTTATCTCTCAAAACAAACTTCGTCTCACTTAAGACATTTTCCTTCGAAACAAAAATTTCAAACA
4758533 TGTTTCTCTTAA
196 TGTTTCTCTTAA
*
4758545 AAAC-AAAGTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTTGTCTCACTTGAGACAT
1 AAACAAAAGTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTTATCTCACTTGAGACAT
* * * * *
4758609 TTTCCTTATGAACACAAATATCAAAGTTGTTTTTCTTAAAAACAAATTTTGTCTCACTTGAGACA
66 TTTCCTTAGGAAAAAAAATATCAAAGTTATTTTTCTTAAAAACAAATTTTGGCTCACTTGAGACA
*
4758674 TTTATCTCTCAAAACAAACTTCGTCTCGCTTAAGACATTTTCC
131 TTTATCTCTCAAAACAAACTTCGTCTCACTTAAGACATTTTCC
4758717 AAAAATTTGA
Statistics
Matches: 155, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
206 151 0.97
207 4 0.03
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.39
Consensus pattern (207 bp):
AAACAAAAGTTTGTCTCACTTGAGACATTTTTCTCTTAAAACAAATTTTATCTCACTTGAGACAT
TTTCCTTAGGAAAAAAAATATCAAAGTTATTTTTCTTAAAAACAAATTTTGGCTCACTTGAGACA
TTTATCTCTCAAAACAAACTTCGTCTCACTTAAGACATTTTCCTTCGAAACAAAAATTTCAAACA
TGTTTCTCTTAA
Found at i:4758894 original size:37 final size:37
Alignment explanation
Indices: 4758819--4758894 Score: 84
Period size: 38 Copynumber: 2.0 Consensus size: 37
4758809 ACAAAATTAA
*
4758819 TCTCACTTGAGATCATTTTCTCTAAAAAATGAATTTTG
1 TCTCACTTGAGATCATTTTCTCTAAAAAA-GAAGTTTG
* *
4758857 TCTCACTTGATA-CATTTTCCTCTCAAAACA-AAGTTTG
1 TCTCACTTGAGATCATTTT-CTCT-AAAAAAGAAGTTTG
4758894 T
1 T
4758895 ATCCCTTAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
37 13 0.39
38 15 0.45
39 5 0.15
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (37 bp):
TCTCACTTGAGATCATTTTCTCTAAAAAAGAAGTTTG
Found at i:4759051 original size:36 final size:36
Alignment explanation
Indices: 4759004--4759532 Score: 394
Period size: 36 Copynumber: 14.4 Consensus size: 36
4758994 CTTTGAATCT
* *
4759004 GTTTCCCTTGAAACAAACTTTGTCTCCCTCGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* *
4759040 GTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* *
4759076 ATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACA
* *
4759113 TTTTCCCTTGAAACAAATTTTGTCTCCCTTGAAACAAA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGAC--A
* * * *
4759151 TTTTGTCTCTCTTGAGAC--A----GTTTCCCTTGAAACAAA
1 -GTT-TC-C-CTTGAAACAAATTTTGTCTCCCTTGAGAC--A
* * *
4759187 GTTTTGTCTCTCTTG--AGAAA----GTTTCCCTTGAAACAAA
1 G--TT-TC-C-CTTGAAACAAATTTTGTCTCCCTTGAGAC--A
*
4759224 TTTTGTCTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 ----GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* * *
4759264 ATCTCCCTTGAAGCAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
**
4759300 GTTTCCCTTGAAACAAAGTTTTGTCTATCTTGAGACA
1 GTTTCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACA
* *
4759337 GTTTCTCTTGAAACAAA-TTTGTCTCCATTGAGACAATTTACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAG-------ACA
*
4759379 GTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
*
4759415 GTTTCCCTTGAAACAAATTTTGTCTTCCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* * *
4759451 GTCTCCCTTGAGAC--A----GTTTCCCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
* * *
4759481 GTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
4759517 GTTTCCCTTGAAACAA
1 GTTTCCCTTGAAACAA
4759533 CCTTAGCTTG
Statistics
Matches: 415, Mismatches: 42, Indels: 72
0.78 0.08 0.14
Matches are distributed among these distances:
30 24 0.06
32 1 0.00
34 1 0.00
35 13 0.03
36 207 0.50
37 99 0.24
38 7 0.02
39 4 0.01
40 4 0.01
41 2 0.00
42 39 0.09
43 14 0.03
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
Found at i:4759166 original size:57 final size:59
Alignment explanation
Indices: 4759079--4759202 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 59
4759069 TGAGACAATT
*
4759079 TCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACATTTTCCCTTGAAACAAA-TTTTGTC
1 TCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTC
4759137 TCCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTC
1 TCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTC
*
4759195 TCTCTTGA
1 TCCCTTGA
4759203 GAAAGTTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
57 35 0.56
58 28 0.44
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.40
Consensus pattern (59 bp):
TCCCTTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTC
Found at i:4759168 original size:130 final size:132
Alignment explanation
Indices: 4758939--4759410 Score: 540
Period size: 130 Copynumber: 3.5 Consensus size: 132
4758929 CTTTAAATAT
* *
4758939 ATTTCTCTTGAAACAAATTTTGTCTCTCTTGAGACAA--TTTCTCTTGAAACAACATCTTTGAAT
1 ATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAATTTTTCCCTTGAAACAA-AT-TTTG--T
* * *
4759002 CTGTTTCCCTTGAAACAAACTTTGTCTCCCTCGAGACAGTTTCTCTTGAAACAAA-TTTTGTCTC
62 C----TCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTC
4759066 TCTTGAGACA
123 TCTTGAGACA
4759076 ATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGAC-A-TTTTCCCTTGAAACAAATTTTGTCTC
1 ATTTCCCTTGAAACAAA-TTTTGTCTCTCTTGAGACAATTTTTCCCTTGAAACAAATTTTGTCTC
*
4759139 CCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
65 CCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAG
4759204 A-A
130 ACA
* * *
4759206 AGTTTCCCTTGAAACAAATTTTGTCTCCCTTGAAACAAATTTTGTCTCCCTTGAGAC-AA-----
1 A-TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGAC-AA-TTT-T-TCCCTTGAAACAAATTTTG
* *
4759265 TCTCCCTTGAAGCAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTATCT
61 TCTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCT
4759330 TGAGACA
126 TGAGACA
* * *
4759337 GTTTCTCTTGAAACAAA-TTTGTCTC-CATTGAGACAATTTACAGTTTCTCTTGAAACAAATTTT
1 ATTTCCCTTGAAACAAATTTTGTCTCTC-TTGAGACAA-TT----TTTCCCTTGAAACAAATTTT
4759400 GTCTCCCTTGA
60 GTCTCCCTTGA
4759411 GACAGTTTCC
Statistics
Matches: 296, Mismatches: 17, Indels: 45
0.83 0.05 0.13
Matches are distributed among these distances:
128 6 0.02
129 14 0.05
130 155 0.52
131 37 0.12
132 2 0.01
134 4 0.01
135 3 0.01
136 24 0.08
137 19 0.06
138 32 0.11
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (132 bp):
ATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAATTTTTCCCTTGAAACAAATTTTGTCTCC
CTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
CA
Found at i:4759260 original size:57 final size:58
Alignment explanation
Indices: 4759173--4759295 Score: 196
Period size: 57 Copynumber: 2.1 Consensus size: 58
4759163 TGAGACAGTT
* *
4759173 TCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA-AAGTTTCCCTTGAAACAAATTTTGTC
1 TCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAA-TCTCCCTTGAAACAAATTTTGTC
*
4759231 TCCCTTGAAACAAA-TTTTGTCTCCCTTGAGACAATCTCCCTTGAAGCAAATTTTGTC
1 TCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTC
4759288 TCCCTTGA
1 TCCCTTGA
4759296 GACAGTTTCC
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
57 45 0.74
58 16 0.26
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (58 bp):
TCCCTTGAAACAAAGTTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTC
Found at i:4759332 original size:94 final size:94
Alignment explanation
Indices: 4759046--4759325 Score: 481
Period size: 94 Copynumber: 3.0 Consensus size: 94
4759036 GACAGTTTCT
4759046 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
*
4759111 CATTTTCCCTTGAAACAAATTTTGTCTCC
66 CAGTTTCCCTTGAAACAAATTTTGTCTCC
*
4759140 CTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
*
4759205 AAGTTTCCCTTGAAACAAATTTTGTCTCC
66 CAGTTTCCCTTGAAACAAATTTTGTCTCC
* * * *
4759234 CTTGAAACAAATTTTGTCTCCCTTGAGACAATCTCCCTTGAAGCAAA-TTTTGTCTCCCTTGAGA
1 CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
4759298 CAGTTTCCCTTGAAACAAAGTTTTGTCT
66 CAGTTTCCCTTGAAACAAA-TTTTGTCT
4759326 ATCTTGAGAC
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
93 34 0.19
94 142 0.81
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (94 bp):
CTTGAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAGTTTTGTCTCTCTTGAGA
CAGTTTCCCTTGAAACAAATTTTGTCTCC
Found at i:4759389 original size:151 final size:144
Alignment explanation
Indices: 4759028--4759500 Score: 436
Period size: 151 Copynumber: 3.2 Consensus size: 144
4759018 AAACTTTGTC
*
4759028 TCCCTCGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTC-TTGAGACAATTT-C-----C-CTT
1 TCCCTTGAGACAGTTTCTCTTGAAACAAA-TTTGTCTC-CATTGAGACAATTTACAGTTTCTCTT
* * * *
4759085 GAAACAAAGTTTTGTCTCTCTTGAGACATTTTCCCTTGAAACAAATTTTGTCTCCCTTGAAACAA
64 GAAACAAA-TTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTCTCCCTTGAGAC--
* *
4759150 ATTTTGTCTCTCTTGAGACAGTT
126 A----GTCTCCCTTGAAACAGTT
* * * * * *
4759173 TCCCTTGAAACAAAGTTTTGTCTCTCTTG--AGAAAGTT-TC-CC-TTGAAACAAATTT--TGTC
1 TCCCTTGAGAC--AG---T-T-TCTCTTGAAACAAATTTGTCTCCATTGAGAC-AATTTACAGTT
* *
4759231 TCCCTTGAAACAAATTTTGTCTCCCTTGAGACAATCTCCCTTGAAGCAAATTTTGTCTCCCTTGA
58 TCTCTTGAAACAAATTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTCTCCCTTGA
*
4759296 GACAGTTTCCCTTGAAACAAAGTTTT
123 GACAGTCTCCCTTGAAAC--AG--TT
*
4759322 GTCTATCTTGAGACAGTTTCTCTTGAAACAAATTTGTCTCCATTGAGACAATTTACAGTTTCTCT
1 -TC--CCTTGAGACAGTTTCTCTTGAAACAAATTTGTCTCCATTGAGACAATTTACAGTTTCTCT
* * *
4759387 TGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTTCCTTGAGACAG
63 TGAAACAAATTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
4759452 TCTCCCTTGAGACAGTT
128 TCTCCCTTGAAACAGTT
4759469 TCCCTTGAGACAGTTTCTCTTGAAACAAATTT
1 TCCCTTGAGACAGTTTCTCTTGAAACAAATTT
4759501 TATCTCTCTT
Statistics
Matches: 272, Mismatches: 28, Indels: 57
0.76 0.08 0.16
Matches are distributed among these distances:
144 29 0.11
145 27 0.10
146 10 0.04
147 19 0.07
148 4 0.01
149 14 0.05
150 15 0.06
151 129 0.47
152 25 0.09
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (144 bp):
TCCCTTGAGACAGTTTCTCTTGAAACAAATTTGTCTCCATTGAGACAATTTACAGTTTCTCTTGA
AACAAATTTTGTCTCCCTTGAGACAATCTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTCT
CCCTTGAAACAGTT
Found at i:4759393 original size:42 final size:43
Alignment explanation
Indices: 4759334--4759414 Score: 146
Period size: 42 Copynumber: 1.9 Consensus size: 43
4759324 CTATCTTGAG
4759334 ACAGTTTCTCTTGAAACAAA-TTTGTCTCCATTGAGACAATTT
1 ACAGTTTCTCTTGAAACAAATTTTGTCTCCATTGAGACAATTT
*
4759376 ACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACA
1 ACAGTTTCTCTTGAAACAAATTTTGTCTCCATTGAGACA
4759415 GTTTCCCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
42 20 0.54
43 17 0.46
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (43 bp):
ACAGTTTCTCTTGAAACAAATTTTGTCTCCATTGAGACAATTT
Found at i:4759394 original size:22 final size:22
Alignment explanation
Indices: 4759334--4759394 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
4759324 CTATCTTGAG
4759334 ACAGTTTCTCTTGAAACAAATTT
1 ACAGTTTCTCTTGAAAC-AATTT
* *
4759357 ---GTCTC-CATTGAGACAATTT
1 ACAGTTTCTC-TTGAAACAATTT
4759376 ACAGTTTCTCTTGAAACAA
1 ACAGTTTCTCTTGAAACAA
4759395 ATTTTGTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 11
0.66 0.09 0.25
Matches are distributed among these distances:
19 6 0.21
20 10 0.34
22 12 0.41
23 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (22 bp):
ACAGTTTCTCTTGAAACAATTT
Found at i:4759416 original size:78 final size:80
Alignment explanation
Indices: 4759297--4759450 Score: 242
Period size: 78 Copynumber: 1.9 Consensus size: 80
4759287 CTCCCTTGAG
* *
4759297 ACAGTTTCCCTTGAAACAAAGTTTTGTCTATCTTGAGACAGTTTCTCTTGAAACAAA-TTTGTC-
1 ACAGTTTCCCTTGAAACAAAGTTTTGTCTACCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCT
4759360 TCCATTGAGACAATTT
66 TCC-TTGAGACAATTT
* *
4759376 ACAGTTTCTCTTGAAACAAA-TTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCT
1 ACAGTTTCCCTTGAAACAAAGTTTTGTCTACCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCT
4759440 TCCTTGAGACA
66 TCCTTGAGACA
4759451 GTCTCCCTTG
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
78 33 0.48
79 33 0.48
80 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (80 bp):
ACAGTTTCCCTTGAAACAAAGTTTTGTCTACCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCT
TCCTTGAGACAATTT
Found at i:4759423 original size:15 final size:15
Alignment explanation
Indices: 4759403--4759491 Score: 88
Period size: 15 Copynumber: 5.5 Consensus size: 15
4759393 AAATTTTGTC
4759403 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
* *
4759418 TCCCTTGAAACAAATTTT
1 TCCCTTGAGAC--A-GTT
*
4759436 GTCTTCCTTGAGACAGTC
1 -TC--CCTTGAGACAGTT
4759454 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
4759469 TCCCTTGAGACAGTT
1 TCCCTTGAGACAGTT
*
4759484 TCTCTTGA
1 TCCCTTGA
4759492 AACAAATTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
15 44 0.72
17 3 0.05
18 3 0.05
19 3 0.05
21 8 0.13
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (15 bp):
TCCCTTGAGACAGTT
Found at i:4759512 original size:51 final size:51
Alignment explanation
Indices: 4759376--4759531 Score: 171
Period size: 51 Copynumber: 3.1 Consensus size: 51
4759366 GAGACAATTT
4759376 ACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAA
1 ACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAA
* * *
4759427 ACAAATTTTGTCTTCCTTGAGAC--A----GTCTCCCTTGAGACAGTTTCCCTTGAG
1 AC--A-GTT-TC-T-CTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAA
* *
4759478 ACAGTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCCTTGAA
1 ACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAA
4759529 ACA
1 ACA
4759532 ACCTTAGCTT
Statistics
Matches: 85, Mismatches: 8, Indels: 24
0.73 0.07 0.21
Matches are distributed among these distances:
45 7 0.08
46 1 0.01
47 3 0.04
48 2 0.02
49 1 0.01
51 57 0.67
53 1 0.01
54 2 0.02
55 3 0.04
56 1 0.01
57 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.37
Consensus pattern (51 bp):
ACAGTTTCTCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCCCTTGAA
Found at i:4759512 original size:66 final size:66
Alignment explanation
Indices: 4759403--4759527 Score: 207
Period size: 66 Copynumber: 1.9 Consensus size: 66
4759393 AAATTTTGTC
*
4759403 TCCCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTTCCTTGAGACAGTCTCCCTTGAGACAGT
1 TCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTTCCTTGAGACAGTCTCCCTTGAGACAGT
4759468 T
66 T
* *
4759469 TCCCTTGAGACAGTTTCTCTTGAAACAAATTTTATC-TCTCTTGAGACAGTTTCCCTTGA
1 TCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTTC-CTTGAGACAGTCTCCCTTGA
4759528 AACAACCTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 2 0.04
66 53 0.96
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (66 bp):
TCCCTTGAGACAGTTTCCCTTGAAACAAATTTTATCTTCCTTGAGACAGTCTCCCTTGAGACAGT
T
Found at i:4763490 original size:2 final size:2
Alignment explanation
Indices: 4763483--4763511 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4763473 TCATACCTCT
4763483 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4763512 TTTGTTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4763724 original size:51 final size:51
Alignment explanation
Indices: 4763666--4763792 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 51
4763656 GCAGTAAAGT
* *
4763666 GCGCCCCCTGAACCGCATTATATGCTGATTTGGCG-T-CACGTGGAGTATAGC
1 GCGCCCCCTGAACCGCACTATACGCTGA-TTGG-GTTACACGTGGAGTATAGC
* * *
4763717 GCGCCCCCTGTACCGCGCTATACGCTGATTGGGTTACACGTGGGGTATAGC
1 GCGCCCCCTGAACCGCACTATACGCTGATTGGGTTACACGTGGAGTATAGC
** *
4763768 GCGCCCCCTGCTCCGCGCTATACGC
1 GCGCCCCCTGAACCGCACTATACGC
4763793 CACGTAGGGG
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 5 0.07
51 61 0.91
ACGTcount: A:0.16, C:0.33, G:0.28, T:0.23
Consensus pattern (51 bp):
GCGCCCCCTGAACCGCACTATACGCTGATTGGGTTACACGTGGAGTATAGC
Found at i:4766545 original size:50 final size:50
Alignment explanation
Indices: 4766491--4766616 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
4766481 AGATACCCAT
* * * *
4766491 GTATAGCGCGGATCAGGGGGAGCGCTATGCCCACGTGGCGCCAGATCACC
1 GTATAGCGCGGATCAGGGCGAGCGCTATACCCACGTGGCGCCAAATCAAC
* ** * *
4766541 GTATATCGCGGGGCAGAGCGCGCGCTATACCCACGTGGCGCCAAATCAAC
1 GTATAGCGCGGATCAGGGCGAGCGCTATACCCACGTGGCGCCAAATCAAC
* * *
4766591 GTATAGTGCGGTTCAGGGCGCGCGCT
1 GTATAGCGCGGATCAGGGCGAGCGCT
4766617 TTACTGCTAC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (50 bp):
GTATAGCGCGGATCAGGGCGAGCGCTATACCCACGTGGCGCCAAATCAAC
Found at i:4769112 original size:16 final size:16
Alignment explanation
Indices: 4769083--4769115 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
4769073 CAATTCTGTA
4769083 ATCATTGTTTCTTTTT
1 ATCATTGTTTCTTTTT
*
4769099 ATCA-TGTTTCCTTTT
1 ATCATTGTTTCTTTTT
4769114 AT
1 AT
4769116 TTTTCCAGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.64
Consensus pattern (16 bp):
ATCATTGTTTCTTTTT
Found at i:4773778 original size:23 final size:23
Alignment explanation
Indices: 4773751--4773886 Score: 133
Period size: 23 Copynumber: 6.2 Consensus size: 23
4773741 TTGAAAAAGG
4773751 AGAAAT-GAGTTTATGGAAGAAGA
1 AGAAATAG-GTTTATGGAAGAAGA
4773774 AGAAATAGGTTTATGGAAGAAGA
1 AGAAATAGGTTTATGGAAGAAGA
4773797 AGAAATAGGTTTAT--AA-AAGA
1 AGAAATAGGTTTATGGAAGAAGA
* * *
4773817 AGGAATGGGTTTATGG--GAAAA
1 AGAAATAGGTTTATGGAAGAAGA
* * **
4773838 AGCAACAAATTTATGGAAGAAGA
1 AGAAATAGGTTTATGGAAGAAGA
* *
4773861 AGAAA-ATGTTTATGAAAGAAGA
1 AGAAATAGGTTTATGGAAGAAGA
4773883 AGAA
1 AGAA
4773887 TGATTCAGAA
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
20 16 0.17
21 16 0.17
22 18 0.19
23 43 0.46
24 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.27, T:0.21
Consensus pattern (23 bp):
AGAAATAGGTTTATGGAAGAAGA
Found at i:4774709 original size:13 final size:13
Alignment explanation
Indices: 4774691--4774716 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4774681 CTACTAATCA
4774691 ATAATTGTGAGGC
1 ATAATTGTGAGGC
4774704 ATAATTGTGAGGC
1 ATAATTGTGAGGC
4774717 TTTCTTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
ATAATTGTGAGGC
Found at i:4779870 original size:21 final size:21
Alignment explanation
Indices: 4779725--4779871 Score: 80
Period size: 21 Copynumber: 6.9 Consensus size: 21
4779715 TCGAGGGTTC
4779725 TATGTGGTCCTTCGGGACATA
1 TATGTGGTCCTTCGGGACATA
** * * *
4779746 TATGTAATCCTTTGGAACATC
1 TATGTGGTCCTTCGGGACATA
* * **
4779767 TATGCGGTTCTTCGGGACACC
1 TATGTGGTCCTTCGGGACATA
* * * *
4779788 TATTTGGTCCTTTGGAATATA
1 TATGTGGTCCTTCGGGACATA
* * *
4779809 TATGTGGTCTTTAAGGAGA-ATTC
1 TATGTGGTCCTT-CGG-GACA-TA
* * *
4779832 TTTGTGGTCCTCCAGGACATA
1 TATGTGGTCCTTCGGGACATA
*
4779853 TATGTAGTCCTTCGGGACA
1 TATGTGGTCCTTCGGGACA
4779872 AATTTTATGT
Statistics
Matches: 87, Mismatches: 35, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
21 71 0.82
22 5 0.06
23 11 0.13
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (21 bp):
TATGTGGTCCTTCGGGACATA
Found at i:4780657 original size:19 final size:18
Alignment explanation
Indices: 4780633--4780668 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
4780623 ATGTAATTAG
4780633 TGTACCGATACACCTAGGA
1 TGTACCGATACA-CTAGGA
4780652 TGTACCGATACACTAGG
1 TGTACCGATACACTAGG
4780669 TCAACCAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (18 bp):
TGTACCGATACACTAGGA
Found at i:4784841 original size:19 final size:19
Alignment explanation
Indices: 4784817--4784862 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
4784807 TAGTGAGGAA
4784817 CAAGGCTAGACTTGTTGCT
1 CAAGGCTAGACTTGTTGCT
4784836 CAAGGCTAGACTTGTTGCT
1 CAAGGCTAGACTTGTTGCT
4784855 CAAGGCTA
1 CAAGGCTA
4784863 TACTCAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (19 bp):
CAAGGCTAGACTTGTTGCT
Found at i:4786925 original size:22 final size:20
Alignment explanation
Indices: 4786890--4786943 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
4786880 AATTTTTTTC
*
4786890 AAAAT-TTTTAAATTTTCGAAA
1 AAAATGTTTTTAATTTT--AAA
4786911 AAAATGTTTTTAATTTTAAA
1 AAAATGTTTTTAATTTTAAA
*
4786931 ATAATTGTTTTTA
1 A-AAATGTTTTTA
4786944 TTTAATTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.14
21 15 0.52
22 10 0.34
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (20 bp):
AAAATGTTTTTAATTTTAAA
Found at i:4787004 original size:14 final size:15
Alignment explanation
Indices: 4786985--4787021 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
4786975 GTATTATGAT
4786985 TTTTCAAAATAATA-
1 TTTTCAAAATAATAG
4786999 TTTTC-AAA-AATAG
1 TTTTCAAAATAATAG
4787012 TTTTCAAAAT
1 TTTTCAAAAT
4787022 TTCCTATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.43
Consensus pattern (15 bp):
TTTTCAAAATAATAG
Found at i:4791224 original size:23 final size:24
Alignment explanation
Indices: 4791189--4791292 Score: 122
Period size: 23 Copynumber: 4.4 Consensus size: 24
4791179 GAGTCGAGGG
*
4791189 TTCTACGTAGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* * *
4791213 -TCTATGTTGTCCTTTGGGAC-AA
1 TTCTACGTGGTCCTTCGGGACAAA
*
4791235 TTCTACGTGGTCCTTCGGGAAAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
4791259 TTCTACGCGGTCCTTCAGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
*
4791283 TTCTATGTGG
1 TTCTACGTGG
4791293 CACTTCTGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
22 2 0.03
23 33 0.50
24 31 0.47
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:4791265 original size:24 final size:24
Alignment explanation
Indices: 4791189--4791292 Score: 104
Period size: 24 Copynumber: 4.4 Consensus size: 24
4791179 GAGTCGAGGG
* *
4791189 TTCTACGTAGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGAAAAA
* * * *
4791213 -TCTATGTTGTCCTTTGGG-ACAA
1 TTCTACGTGGTCCTTCGGGAAAAA
4791235 TTCTACGTGGTCCTTCGGGAAAAA
1 TTCTACGTGGTCCTTCGGGAAAAA
* * *
4791259 TTCTACGCGGTCCTTCAGGACAAA
1 TTCTACGTGGTCCTTCGGGAAAAA
*
4791283 TTCTATGTGG
1 TTCTACGTGG
4791293 CACTTCTGTA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
22 2 0.03
23 30 0.47
24 32 0.50
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGAAAAA
Found at i:4792686 original size:2 final size:2
Alignment explanation
Indices: 4792674--4792708 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
4792664 ATCCTAGTTA
*
4792674 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4792709 TTAAAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:4796585 original size:42 final size:42
Alignment explanation
Indices: 4796527--4796681 Score: 160
Period size: 42 Copynumber: 3.8 Consensus size: 42
4796517 TAAGCTTCAA
* *
4796527 CTTGAC-TCCTCGTGAAGAGGAGTCAATATTTCAATGTAATT
1 CTTGACTTCCTCGTGAAGAGAAGTCAATCTTTCAATGTAATT
*
4796568 CTTGACTTCCTCGTGAAGAGAAGTCAATC-TT---TGTTATT
1 CTTGACTTCCTCGTGAAGAGAAGTCAATCTTTCAATGTAATT
* * * * * *
4796606 CTTAACTCCCTTGCT-AAGAGGAGTCAATCTTTCAATATCATT
1 CTTGACTTCCTCG-TGAAGAGAAGTCAATCTTTCAATGTAATT
* *
4796648 CTTGACTTTCTCGTAAAGAGAAGTCAATCTTTCA
1 CTTGACTTCCTCGTGAAGAGAAGTCAATCTTTCA
4796682 GTAGTATCTT
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
38 29 0.31
39 3 0.03
41 9 0.10
42 52 0.56
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (42 bp):
CTTGACTTCCTCGTGAAGAGAAGTCAATCTTTCAATGTAATT
Found at i:4796712 original size:14 final size:14
Alignment explanation
Indices: 4796693--4796739 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
4796683 TAGTATCTTT
4796693 CTCATATACATATA
1 CTCATATACATATA
4796707 CTCATAT-CATATA
1 CTCATATACATATA
* *
4796720 TCACATGTACATATA
1 -CTCATATACATATA
*
4796735 ATCAT
1 CTCAT
4796740 CTATCTCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 6 0.22
14 15 0.56
15 6 0.22
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.36
Consensus pattern (14 bp):
CTCATATACATATA
Found at i:4799137 original size:13 final size:13
Alignment explanation
Indices: 4799121--4799151 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
4799111 ATATTTTTAT
4799121 TTTATATAAGGAA
1 TTTATATAAGGAA
4799134 TTTATATAAGGAA
1 TTTATATAAGGAA
4799147 TTTAT
1 TTTAT
4799152 GGAAATGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (13 bp):
TTTATATAAGGAA
Found at i:4799776 original size:14 final size:15
Alignment explanation
Indices: 4799747--4799776 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4799737 ACTTTTTATC
4799747 TTTTAAAATTATTTT
1 TTTTAAAATTATTTT
4799762 TTTTAAAATTATTTT
1 TTTTAAAATTATTTT
4799777 AAAGGCCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAAATTATTTT
Found at i:4801157 original size:42 final size:43
Alignment explanation
Indices: 4801064--4801306 Score: 258
Period size: 43 Copynumber: 5.6 Consensus size: 43
4801054 TCGCTAAAGT
* * * * *
4801064 TAGCGGCGTTTGTGGAAAAAAAATGCCGCAATAGGTCGAAATCTA
1 TAGCGGCGTTTTTGG--AACAAACGCCGCAAAAGGTCGAGATCTA
*
4801109 TAGTGGCGTTTTTGGAGA-AAACGCCGCAAAAGGTC-AGATCTA
1 TAGCGGCGTTTTTGGA-ACAAACGCCGCAAAAGGTCGAGATCTA
* *
4801151 TAGTGGCGTTTTTGGAACAAACGCCGCAATAGGTCGAGATCTA
1 TAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATCTA
* * *
4801194 TAGCGGCGTTTTTGGAACAAACGCTGCAGAAGGTCGAGATATA
1 TAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATCTA
* * * * **
4801237 TAGCGACGTTTTTGGAATAAACGTCGTAAAATTTC-AGATCTA
1 TAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATCTA
* *
4801279 TAGCGGCGTTTTTGTATGCAAACGCCGC
1 TAGCGGCGTTTTTGGA-ACAAACGCCGC
4801307 TAATTATCGT
Statistics
Matches: 168, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 58 0.35
43 95 0.57
44 1 0.01
45 13 0.08
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCGAGATCTA
Found at i:4801216 original size:85 final size:87
Alignment explanation
Indices: 4801088--4801306 Score: 268
Period size: 85 Copynumber: 2.6 Consensus size: 87
4801078 GAAAAAAAAT
* * *
4801088 GCCGCAATAGGTCGAAATCTATAGTGGCGTTTTTGGAGA-AAACGCCGCAAAAGGTC-AGATCTA
1 GCCGCAATAGGTCGAGATCTATAGCGGCGTTTTTGGAGACAAACGCCGCAAAAGGTCGAGATATA
* *
4801151 TAGTGGCGTTTTTGGAACAAAC
66 TAGCGACGTTTTTGGAACAAAC
* *
4801173 GCCGCAATAGGTCGAGATCTATAGCGGCGTTTTTGGA-ACAAACGCTGCAGAAGGTCGAGATATA
1 GCCGCAATAGGTCGAGATCTATAGCGGCGTTTTTGGAGACAAACGCCGCAAAAGGTCGAGATATA
*
4801237 TAGCGACGTTTTTGGAATAAAC
66 TAGCGACGTTTTTGGAACAAAC
* * * ** *
4801259 GTCGTAAAATTTC-AGATCTATAGCGGCGTTTTTGTATG-CAAACGCCGC
1 GCCGCAATAGGTCGAGATCTATAGCGGCGTTTTTGGA-GACAAACGCCGC
4801307 TAATTATCGT
Statistics
Matches: 115, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
84 1 0.01
85 72 0.63
86 42 0.37
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (87 bp):
GCCGCAATAGGTCGAGATCTATAGCGGCGTTTTTGGAGACAAACGCCGCAAAAGGTCGAGATATA
TAGCGACGTTTTTGGAACAAAC
Found at i:4805068 original size:41 final size:41
Alignment explanation
Indices: 4804996--4805117 Score: 147
Period size: 41 Copynumber: 3.0 Consensus size: 41
4804986 TTTTAAACAC
* *
4804996 AAACGCCACTAAAGTACG-AGTCTATATCGGCGTTTGTATAA
1 AAACGCCACTAAAGAACGTA-TCTATAGCGGCGTTTGTATAA
* * * * *
4805037 AAATGCCGCTAAAGAATGTATTTATAGCGGCGTTTGAATAA
1 AAACGCCACTAAAGAACGTATCTATAGCGGCGTTTGTATAA
* *
4805078 AAACGCCACTAAAGTACGTGTCTATAGCGGCGTTTGTATA
1 AAACGCCACTAAAGAACGTATCTATAGCGGCGTTTGTATA
4805118 GCCGCTAAAT
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
41 65 0.98
42 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (41 bp):
AAACGCCACTAAAGAACGTATCTATAGCGGCGTTTGTATAA
Found at i:4811656 original size:17 final size:18
Alignment explanation
Indices: 4811636--4811690 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 18
4811626 AAGAGAAACG
4811636 ATAG-GAAAAGGAAAAAA
1 ATAGAGAAAAGGAAAAAA
**
4811653 ATAGAGAAAAAAAAAAAGA
1 ATAGAGAAAAGGAAAAA-A
* *
4811672 AAAGATAAAAGGAAAAAA
1 ATAGAGAAAAGGAAAAAA
4811690 A
1 A
4811691 GAAAAAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
17 4 0.13
18 12 0.40
19 14 0.47
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.05
Consensus pattern (18 bp):
ATAGAGAAAAGGAAAAAA
Found at i:4811681 original size:14 final size:14
Alignment explanation
Indices: 4811619--4811829 Score: 107
Period size: 14 Copynumber: 14.6 Consensus size: 14
4811609 ATATAGATAT
4811619 AAAAGAAAAGAGAA
1 AAAAGAAAAGAGAA
*
4811633 ACGATAGGAAAAG-G-A
1 A--A-AAGAAAAGAGAA
*
4811648 AAAA-AATAGAGAA
1 AAAAGAAAAGAGAA
4811661 AAAA-AAAA-AGAA
1 AAAAGAAAAGAGAA
* *
4811673 AAGATAAAAG-GAAA
1 AAAAGAAAAGAG-AA
4811687 AAAAGAAAAAAAGAGAA
1 AAAAG---AAAAGAGAA
4811704 AAGATAGAAAA-AGAA
1 AA-A-AGAAAAGAGAA
* *
4811719 GAAGGAAAAAGAGAA
1 AAAAG-AAAAGAGAA
* *
4811734 AATAGAAAAGATAA
1 AAAAGAAAAGAGAA
*
4811748 AAAATTAAAA-AGAAA
1 AAAA-GAAAAGAG-AA
*
4811763 AAATAAAAAAGAGAA
1 AAA-AGAAAAGAGAA
4811778 AAAGAGGAAAA-AGAA
1 AAA-A-GAAAAGAGAA
*
4811793 AAAAGAAAAAAGAA
1 AAAAGAAAAGAGAA
* *
4811807 AAAAGAAAAAAGGA
1 AAAAGAAAAGAGAA
4811821 AAAAGAAAA
1 AAAAGAAAA
4811830 AAATATTTCA
Statistics
Matches: 155, Mismatches: 20, Indels: 44
0.71 0.09 0.20
Matches are distributed among these distances:
11 4 0.03
12 9 0.06
13 20 0.13
14 50 0.32
15 39 0.25
16 13 0.08
17 16 0.10
18 2 0.01
19 2 0.01
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAAAGAAAAGAGAA
Found at i:4811689 original size:8 final size:8
Alignment explanation
Indices: 4811657--4811832 Score: 98
Period size: 8 Copynumber: 21.1 Consensus size: 8
4811647 AAAAAAATAG
4811657 AGAAAAAA
1 AGAAAAAA
*
4811665 AAAAAGAAA
1 AGAAA-AAA
*
4811674 AGATAAAA
1 AGAAAAAA
*
4811682 GGAAAAAA
1 AGAAAAAA
4811690 AGAAAAAA
1 AGAAAAAA
4811698 AGAGAAAAGA
1 AGA-AAAA-A
4811708 TAGAAAAAGA
1 -AGAAAAA-A
4811718 AGAAGGAAAA
1 AGAA--AAAA
*
4811728 AGAGAAAAT
1 AGA-AAAAA
4811737 AGAAAAGATA
1 AGAAAA-A-A
4811747 A-AAAATTAA
1 AGAAAA--AA
4811756 A-AAGAAAA
1 AGAA-AAAA
4811764 A-ATAAAAA
1 AGA-AAAAA
*
4811772 AGAGAAAA
1 AGAAAAAA
*
4811780 AGAGGAAAA
1 AGA-AAAAA
4811789 AG-AAAAA
1 AGAAAAAA
4811796 AG-AAAAA
1 AGAAAAAA
4811803 AG-AAAAA
1 AGAAAAAA
4811810 AG-AAAAA
1 AGAAAAAA
*
4811817 AG-GAAAA
1 AGAAAAAA
4811824 AGAAAAAA
1 AGAAAAAA
4811832 A
1 A
4811833 TATTTCAAGA
Statistics
Matches: 140, Mismatches: 13, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
7 33 0.24
8 47 0.34
9 38 0.27
10 15 0.11
11 7 0.05
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (8 bp):
AGAAAAAA
Found at i:4811765 original size:37 final size:36
Alignment explanation
Indices: 4811685--4811832 Score: 136
Period size: 37 Copynumber: 4.0 Consensus size: 36
4811675 GATAAAAGGA
* *
4811685 AAAAAAGAAAAAAAGAGAAAAGATAGAAAAAGAAGAAG
1 AAAAAAG-AAAAAAGAGAAAAGATA-AAAAAAAAAAAG
* * * *
4811723 GAAAAAGAGAAAATAGAAAAGATAAAAAATTAAAAAG
1 AAAAAAGAAAAAAGAGAAAAGATAAAAAA-AAAAAAG
* * *
4811760 AAAAAATAAAAAAGAGAAAAAGAGGAAAAAGAAAAAAG
1 AAAAAAGAAAAAAGAG-AAAAGA-TAAAAAAAAAAAAG
* *
4811798 AAAAAAGAAAAAAGAAAAAAGGA-AAAAGAAAAAAA
1 AAAAAAGAAAAAAGAGAAAA-GATAAAAAAAAAAAA
4811833 TATTTCAAGA
Statistics
Matches: 90, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
36 15 0.17
37 36 0.40
38 34 0.38
39 5 0.06
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (36 bp):
AAAAAAGAAAAAAGAGAAAAGATAAAAAAAAAAAAG
Found at i:4811779 original size:52 final size:52
Alignment explanation
Indices: 4811657--4811832 Score: 150
Period size: 52 Copynumber: 3.4 Consensus size: 52
4811647 AAAAAAATAG
* * * * *
4811657 AGAAAAAAAAAAAGAAAAGATAAA-AGGAAAAA-AAGAAA-AAAAGAGAAAAGA
1 AGAAAAAAGAAAA-AAGAGAAAAAGAGGAAAAAGAAAAAAGAAAAAAGAAAA-A
* * * **
4811708 TAG-AAAAAG-AAGAAG-GAAAAAGA-GAAAATAGAAAAGATAAAAAATTAAAA
1 -AGAAAAAAGAAAAAAGAGAAAAAGAGGAAAA-AGAAAAAAGAAAAAAGAAAAA
*
4811758 AGAAAAAATAAAAAAGAGAAAAAGAGGAAAAAGAAAAAAGAAAAAAGAAAAA
1 AGAAAAAAGAAAAAAGAGAAAAAGAGGAAAAAGAAAAAAGAAAAAAGAAAAA
* *
4811810 AGAAAAAAGGAAAAAGAAAAAAA
1 AGAAAAAAGAAAAAAGAGAAAAA
4811833 TATTTCAAGA
Statistics
Matches: 98, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
48 10 0.10
49 6 0.06
50 12 0.12
51 18 0.18
52 47 0.48
53 5 0.05
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (52 bp):
AGAAAAAAGAAAAAAGAGAAAAAGAGGAAAAAGAAAAAAGAAAAAAGAAAAA
Found at i:4811789 original size:38 final size:37
Alignment explanation
Indices: 4811671--4811831 Score: 141
Period size: 38 Copynumber: 4.3 Consensus size: 37
4811661 AAAAAAAAAG
* * *
4811671 AAAAGATAAAAGGAAAAAAAGAAAAAAAGAGAAAAGATAGA
1 AAAAGA-AAAAAG-AAAAAAG-AAAAAAGAAAAAAGA-GGA
* * * **
4811712 AAAAGAAGAAGGAAAAAGAGAAAATAG--AAAAGATAA
1 AAAAGAAAAAAGAAAAA-AGAAAAAAGAAAAAAGAGGA
** *
4811748 AAAATTAAAAAGAAAAAATAAAAAAGAGAAAAAGAGGA
1 AAAAGAAAAAAGAAAAAAGAAAAAAGA-AAAAAGAGGA
4811786 AAAAGAAAAAAGAAAAAAGAAAAAAG-AAAAA-AGGA
1 AAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAGGA
4811821 AAAAGAAAAAA
1 AAAAGAAAAAA
4811832 ATATTTCAAG
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
35 22 0.22
36 19 0.19
37 6 0.06
38 30 0.30
39 11 0.11
40 7 0.07
41 6 0.06
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (37 bp):
AAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAGAGGA
Found at i:4811830 original size:7 final size:7
Alignment explanation
Indices: 4811649--4811831 Score: 138
Period size: 7 Copynumber: 24.9 Consensus size: 7
4811639 GGAAAAGGAA
4811649 AAAAATAG
1 AAAAA-AG
4811657 AGAAAAA-
1 A-AAAAAG
4811664 AAAAAAG
1 AAAAAAG
4811671 --AAAAG
1 AAAAAAG
*
4811676 ATAAAAGG
1 A-AAAAAG
4811684 AAAAAAAG
1 -AAAAAAG
4811692 AAAAAAAG
1 -AAAAAAG
*
4811700 AGAAAAGAT
1 A-AAAA-AG
4811709 AGAAAAAG
1 A-AAAAAG
* *
4811717 AAGAAGG
1 AAAAAAG
4811724 AAAAAGAG
1 AAAAA-AG
*
4811732 AAAATAG
1 AAAAAAG
* *
4811739 AAAAGAT
1 AAAAAAG
*
4811746 AAAAAAT
1 AAAAAAG
*
4811753 TAAAAAG
1 AAAAAAG
*
4811760 AAAAAAT
1 AAAAAAG
4811767 AAAAAAG
1 AAAAAAG
4811774 AGAAAAAG
1 A-AAAAAG
4811782 AGGAAAAAG
1 A--AAAAAG
4811791 AAAAAAG
1 AAAAAAG
4811798 AAAAAAG
1 AAAAAAG
4811805 AAAAAAG
1 AAAAAAG
4811812 AAAAAAG
1 AAAAAAG
*
4811819 GAAAAAG
1 AAAAAAG
4811826 AAAAAA
1 AAAAAA
4811832 ATATTTCAAG
Statistics
Matches: 145, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
5 5 0.03
6 5 0.03
7 78 0.54
8 37 0.26
9 20 0.14
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.04
Consensus pattern (7 bp):
AAAAAAG
Found at i:4814695 original size:217 final size:217
Alignment explanation
Indices: 4814320--4814752 Score: 821
Period size: 217 Copynumber: 2.0 Consensus size: 217
4814310 TTTCTCAAGC
4814320 ATGGAAAACATACAATCGTGTGTTCAAAGATTTCAAAGAAGCAAGTCCTAGAGTTGGTTCTATCA
1 ATGGAAAACATACAATCGTGTGTTCAAAGATTTCAAAGAAGCAAGTCCTAGAGTTGGTTCTATCA
*
4814385 TCCTCAACCAGTCATGTACACTTTATCCTAGCCATCAAAATCATTATTATTATCATCGAGCATCC
66 TCCTCAACCAGTCATGTACACTTTATCCTAGCCATCAAAATCATTATTATCATCATCGAGCATCC
* *
4814450 TTAACTAATTCCAGAAAACTATTCAAACATTTACTAATGTTATGGTATATTTATTTTACTACTAC
131 TTAACTAATTCCAGAAAACTATTCAAACATTTACTAATGTCATGGCATATTTATTTTACTACTAC
4814515 TATCATACAGTGATGCGAGAAT
196 TATCATACAGTGATGCGAGAAT
4814537 ATGGAAAACATACAATCGTGTGTTCAAAGATTTCAAAGAAGCAAGTCCTAGAGTTGGTTCTATCA
1 ATGGAAAACATACAATCGTGTGTTCAAAGATTTCAAAGAAGCAAGTCCTAGAGTTGGTTCTATCA
4814602 TCCTCAACCAGTCATGTACACTTTATCCTAGCCATCAAAATCATTATTATCATCATCGAGCATCC
66 TCCTCAACCAGTCATGTACACTTTATCCTAGCCATCAAAATCATTATTATCATCATCGAGCATCC
*
4814667 TTAACTAATTCCATAAAACTATTCAAACATTTACTAATGTCATGGCATATTTATTTTACTACTAC
131 TTAACTAATTCCAGAAAACTATTCAAACATTTACTAATGTCATGGCATATTTATTTTACTACTAC
*
4814732 TATCATGCAGTGATGCGAGAA
196 TATCATACAGTGATGCGAGAA
4814753 CCCTACTTAC
Statistics
Matches: 211, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
217 211 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (217 bp):
ATGGAAAACATACAATCGTGTGTTCAAAGATTTCAAAGAAGCAAGTCCTAGAGTTGGTTCTATCA
TCCTCAACCAGTCATGTACACTTTATCCTAGCCATCAAAATCATTATTATCATCATCGAGCATCC
TTAACTAATTCCAGAAAACTATTCAAACATTTACTAATGTCATGGCATATTTATTTTACTACTAC
TATCATACAGTGATGCGAGAAT
Found at i:4821336 original size:42 final size:42
Alignment explanation
Indices: 4821284--4821416 Score: 121
Period size: 42 Copynumber: 3.3 Consensus size: 42
4821274 AACTTGAGTC
4821284 CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTT
1 CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTT
* * * * *
4821326 CCTCATGAAGAGAAATC-A-ATCT--TTGTTATTCTTTACTT
1 CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTT
* * * * * *
4821364 CCTCGCGAAGAAGAGTCAATCTTTCAATTTCATTCTTGACTT
1 CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTT
* *
4821406 TCTCGTAAAGA
1 CCTCGTGAAGA
4821417 TAGGTCAATC
Statistics
Matches: 68, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
38 25 0.37
39 1 0.01
40 6 0.09
41 1 0.01
42 35 0.51
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (42 bp):
CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTT
Found at i:4821425 original size:80 final size:79
Alignment explanation
Indices: 4821284--4822376 Score: 530
Period size: 80 Copynumber: 13.3 Consensus size: 79
4821274 AACTTGAGTC
* * * * * * *
4821284 CCTCGTGAAGAGGAATCAATATCTCAATGTCATTCTTGACTTCCTCATGAAGAGAAATCAATCTT
1 CCTCGTGAAGAAGAGTCAATCTTTCAAT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
4821349 TGTTATTCTTTACTT
65 TGTTATTCTTTACTT
* * * * *
4821364 CCTCGCGAAGAAGAGTCAATCTTTCAATTTCATTCTTGACTTTCTCGTAAAGATAGGTCAATCTT
1 CCTCGTGAAGAAGAGTCAATCTTTCAATTT-ATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
*
4821429 TAAG-TATTGTCTTTCTTGACTC
65 T--GTTA-T-TC--T-TT-ACTT
* * * *
4821451 CCTCTTGAA-AAGAAGTCAATC-TCCAAATGTTATTCTTGACTTCCTCGTGAATAGAAGTCATTC
1 CCTCGTGAAGAAG-AGTCAATCTTTC-AAT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC
*
4821514 TTTTGTTATTCTTGACTCTTTCATGAAT
63 -TTTGTTA---TT--CT-TTAC-T---T
* * * * ** * ** * * *
4821542 CCTTCGCGAATAGGAGTCAATCTTTCTATACCATTCTTTACTTTTTCATTGGAGAAAAGTCAATC
1 CC-TCGTGAAGAAGAGTCAATCTTTCAAT-TTATTCTTGACTTCCTC-GTGAAGAGAAGTCAATC
*
4821607 TTTCAG-TATTGTCTTTCTTGACTC
63 TTT--GTTA-T-TC--T-TT-ACTT
* * * * *
4821631 CCTCGTGAAGAAGAGTCAATC-TCCCATGTTATTCTTGACTTTCTCGTGAAGAGAAGTTAACCTT
1 CCTCGTGAAGAAGAGTCAATCTTTCAAT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
4821695 TGTTATT-TTTGACTT
65 TGTTATTCTTT-ACTT
* * * *
4821710 CCTCGTGAAG-AGAAGTCAATCTAT--A-TTATTCATGAC-TCTCTCATGAAGAGGAGTCAATCT
1 CCTCGTGAAGAAG-AGTCAATCTTTCAATTTATTCTTGACTTC-CTCGTGAAGAGAAGTCAATC-
* *
4821770 TTCAATGTTATTATTGACTT
63 TT---TGTTATTCTTTACTT
* * * * **
4821790 CCTCGTGAAG-AGAAATCGATATTT---GTTATTCTTGACTTCCTCGTGAAGAGAAGTTGATCTT
1 CCTCGTGAAGAAG-AGTCAATCTTTCAATTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
* *
4821851 TGTTATTCTTGACTC
65 TGTTATTCTTTACTT
* * * * *
4821866 CCTCATAAAGAGGAGTCAATCTTTCAATGTTATTATTGACTTCCTCGTGAAGAGAAGTTAATCTT
1 CCTCGTGAAGAAGAGTCAATCTTTCAAT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
*
4821931 TGTTATTCTTGT-CTC
65 TGTTATTCTT-TACTT
* * * * *
4821946 CCTCGTGAAGATGAGTCAATCTTTC-ATTGTCTTTCTTGACTCCCTCGTAAAGAGGAGTCAATCT
1 CCTCGTGAAGAAGAGTCAATCTTTCAATT-T-ATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-
* *
4822010 TTCAATGTTATTGTTGACTT
63 TT---TGTTATTCTTTACTT
* * * *
4822030 CCTCGTGAAG-AGAGGTCAACCTTT---GTTATTCTTGGCTTCCTCGTGAAGAGAAGTTAATCTT
1 CCTCGTGAAGAAGA-GTCAATCTTTCAATTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
* *
4822091 TGTTATTCTTGACTC
65 TGTTATTCTTTACTT
* * * * *
4822106 CCTCATGATGAAGAGTCAAGCTTTCAATATTATTCTTGACTTCCTCATGAAGAGAGGTCAATCTT
1 CCTCGTGAAGAAGAGTCAATCTTTCAAT-TTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTT
* **
4822171 TTTTATTCTTGGCTT
65 TGTTATTCTTTACTT
* * * *
4822186 CCTCGTGAAG-AGAAGTCAATCTTT---GTTATTCTGGACTCCCTCGTGAAGAAAAGTCAATCTT
1 CCTCGTGAAGAAG-AGTCAATCTTTCAATTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-T
** * *
4822247 TCAATGGAAATCTTAACTT
64 T---TGTTATTCTTTACTT
* * * * * * *
4822266 TCTCGTGAAG-AGAATTCAATTTTTCGATGTTGTCTTTCTTGACTCCCTCGTGAAGAGAAATCAA
1 CCTCGTGAAGAAG-AGTCAATCTTTC-A-ATT-T-ATTCTTGACTTCCTCGTGAAGAGAAGTCAA
*
4822330 TCTTTCAATGTTATTCTTGACTT
61 TC-TT---TGTTATTCTTTACTT
*
4822353 CCTCGTAAAG-AGAAGTCAATCTTT
1 CCTCGTGAAGAAG-AGTCAATCTTT
4822377 GTTATTCTTT
Statistics
Matches: 784, Mismatches: 155, Indels: 141
0.73 0.14 0.13
Matches are distributed among these distances:
75 1 0.00
76 114 0.15
77 8 0.01
78 4 0.01
79 34 0.04
80 323 0.41
81 9 0.01
82 3 0.00
83 5 0.01
84 32 0.04
85 4 0.01
86 24 0.03
87 132 0.17
88 27 0.03
89 3 0.00
90 2 0.00
91 3 0.00
92 36 0.05
93 19 0.02
94 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (79 bp):
CCTCGTGAAGAAGAGTCAATCTTTCAATTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTT
GTTATTCTTTACTT
Found at i:4821507 original size:42 final size:41
Alignment explanation
Indices: 4821284--4822448 Score: 541
Period size: 38 Copynumber: 28.4 Consensus size: 41
4821274 AACTTGAGTC
* *
4821284 CCTCGTGAAGAGGAA-TCAATATCTCAATGTCATTCTTGACTT
1 CCTCGTGAAGA-GAAGTCAATCTC-CAATGTTATTCTTGACTT
* * * *
4821326 CCTCATGAAGAGAAATCAATCT---TTGTTATTCTTTACTT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* *
4821364 CCTCGCGAAGA-AGAGTCAATCTTTCAAT-TTCATTCTTGACTT
1 CCTCGTGAAGAGA-AGTCAATC-TCCAATGTT-ATTCTTGACTT
* * * * ** *
4821406 TCTCGTAAAGATAGGTCAATCTTTAAGTATTGTCT-TTCTTGACTC
1 CCTCGTGAAGAGAAGTCAATC-TCCA--A-TGT-TATTCTTGACTT
* *
4821451 CCTCTTGAAAAGAAGTCAATCTCCAAATGTTATTCTTGACTT
1 CCTCGTGAAGAGAAGTCAATCTCC-AATGTTATTCTTGACTT
* ***
4821493 CCTCGTGAATAGAAGTC-AT-TCTTTTGTTATTCTTGACTCTTTCATGAAT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGA------C-T---T
* * * * * *** *
4821542 CCTTCGCGAATAGGAGTCAATCTTTCTATACCATTCTTTACTT
1 CC-TCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
** * * * * *
4821585 TTTCATTGGAGAAAAGTCAATCTTTCAGTATTGTCT-TTCTTGACTC
1 CCTC-GTGAAGAGAAGTCAATC-TCCA--A-TGT-TATTCTTGACTT
*
4821631 CCTCGTGAAGA-AGAGTCAATCTCCCATGTTATTCTTGACTT
1 CCTCGTGAAGAGA-AGTCAATCTCCAATGTTATTCTTGACTT
* * ** *
4821672 TCTCGTGAAGAGAAGTTAA---CCTTTGTTATTTTTGACTT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* *
4821710 CCTCGTGAAGAGAAGTCAATCT---ATATTATTCATGAC-T
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * * *
4821747 CTCTCATGAAGAGGAGTCAATCTTTCAATGTTATTATTGACTT
1 C-CTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
* * * *
4821790 CCTCGTGAAGAGAAATCGATAT---TTGTTATTCTTGACTT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
** * *
4821828 CCTCGTGAAGAGAAGTTGATCT---TTGTTATTCTTGACTC
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * * * *
4821866 CCTCATAAAGAGGAGTCAATCTTTCAATGTTATTATTGACTT
1 CCTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
* * * *
4821908 CCTCGTGAAGAGAAGTTAATCT---TTGTTATTCTTGTCTC
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * *
4821946 CCTCGTGAAGATG-AGTCAATCTTTCATTGTCT-TTCTTGACTC
1 CCTCGTGAAGA-GAAGTCAATC-TCCAATGT-TATTCTTGACTT
* * * *
4821988 CCTCGTAAAGAGGAGTCAATCTTTCAATGTTATTGTTGACTT
1 CCTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
* ** *
4822030 CCTCGTGAAGAGAGGTCAA---CCTTTGTTATTCTTGGCTT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * *
4822068 CCTCGTGAAGAGAAGTTAATCT---TTGTTATTCTTGACTC
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * * * *
4822106 CCTCATGATGA-AGAGTCAAGCTTTCAATATTATTCTTGACTT
1 CCTCGTGAAGAGA-AGTCAATC-TCCAATGTTATTCTTGACTT
* * * * *
4822148 CCTCATGAAGAGAGGTCAATCT---TTTTTATTCTTGGCTT
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * *
4822186 CCTCGTGAAGAGAAGTCAATCT---TTGTTATTCTGGACTC
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * ** * *
4822224 CCTCGTGAAGAAAAGTCAATCTTTCAATGGAAATCTTAACTT
1 CCTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
* * * * * * *
4822266 TCTCGTGAAGAGAATTCAATTTTTCGATGTTGTCTTTCTTGACTC
1 CCTCGTGAAGAGAAGTCAA-TCTCCAATG-T-T-ATTCTTGACTT
* *
4822311 CCTCGTGAAGAGAAATCAATCTTTCAATGTTATTCTTGACTT
1 CCTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
* * *
4822353 CCTCGTAAAGAGAAGTCAATCT---TTGTTATTCTTTAC-T
1 CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
* * * *
4822390 CTCTCGTGGAGAGGAGTTAATCTTCCAATGTTATTCTTGGCTT
1 C-CTCGTGAAGAGAAGTCAATC-TCCAATGTTATTCTTGACTT
*
4822433 TCTCGTGAAGAGAAGT
1 CCTCGTGAAGAGAAGT
4822449 TGATCGTTCA
Statistics
Matches: 862, Mismatches: 179, Indels: 164
0.72 0.15 0.14
Matches are distributed among these distances:
37 6 0.01
38 337 0.39
39 20 0.02
40 3 0.00
41 41 0.05
42 308 0.36
43 25 0.03
44 7 0.01
45 71 0.08
46 14 0.02
47 2 0.00
49 3 0.00
50 13 0.02
51 2 0.00
53 10 0.01
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (41 bp):
CCTCGTGAAGAGAAGTCAATCTCCAATGTTATTCTTGACTT
Found at i:4821802 original size:118 final size:118
Alignment explanation
Indices: 4821621--4822448 Score: 839
Period size: 118 Copynumber: 6.9 Consensus size: 118
4821611 AGTATTGTCT
* * * *
4821621 TTCTTGACTCCCTCGTGAAGAAGAGTCAATC-TCCCATGTTATTCTTGACTTTCTCGTGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * * * *
4821685 AGTTAACCTTTGTTATTTTTGACTTCCTCGTGAAGAGAAGTCAATCTATATTA
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
* * * *
4821738 TTCATGACTCTCTCATGAAGAGGAGTCAATCTTTCAATGTTATTATTGACTTCCTCGTGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * * **
4821803 AATCGATATTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTTGATCTTTGTTA
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
* * *
4821856 TTCTTGACTCCCTCATAAAGAGGAGTCAATCTTTCAATGTTATTATTGACTTCCTCGTGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * *
4821921 AGTTAATCTTTGTTATTCTTGTCTCCCTCGTGAAGATG-AGTCAATCTTTCATTGTCT-
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGA-GAAGTCAATC--T--TTGT-TA
* * * *
4821978 TTCTTGACTCCCTCGTAAAGAGGAGTCAATCTTTCAATGTTATTGTTGACTTCCTCGTGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * * *
4822043 GGTCAACCTTTGTTATTCTTGGCTTCCTCGTGAAGAGAAGTTAATCTTTGTTA
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
* * * *
4822096 TTCTTGACTCCCTCATGATGAAGAGTCAAGCTTTCAATATTATTCTTGACTTCCTCATGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * *
4822161 GGTCAATCTTTTTTATTCTTGGCTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
66 AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
* * * ** * * *
4822214 TTCTGGACTCCCTCGTGAAGAAAAGTCAATCTTTCAATGGAAATCTTAACTTTCTCGTGAAGAGA
1 TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
* * *
4822279 ATTCAATTTTTCGATGTTGTCT-TTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTTA
66 AGTCAA----TC--T-TTGT-TATTCTTGACTTCCTCGTGAAGAGAAGTCAATC-TT---TGTTA
* * * * *
4822343 TTCTTGACTTCCTCGTAAAG-AGAAGTCAATC-TT---TGTTATTCTTTAC-TCTCTCGTGGAGA
1 TTCTTGACTCCCTCATGAAGAAG-AGTCAATCTTTCAATGTTATTCTTGACTTC-CTCGTGAAGA
* * * *
4822402 GGAGTTAATCTTCCAATGTTATTCTTGGCTTTCTCGTGAAGAGAAGT
64 GAAGTCAATCTT----TGTTATTCTTGACTTCCTCGTGAAGAGAAGT
4822449 TGATCGTTCA
Statistics
Matches: 600, Mismatches: 83, Indels: 51
0.82 0.11 0.07
Matches are distributed among these distances:
117 28 0.05
118 339 0.56
119 2 0.00
120 2 0.00
121 4 0.01
122 132 0.22
123 1 0.00
124 2 0.00
125 54 0.09
126 3 0.00
128 3 0.00
129 30 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (118 bp):
TTCTTGACTCCCTCATGAAGAAGAGTCAATCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGA
AGTCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATCTTTGTTA
Found at i:4822341 original size:45 final size:43
Alignment explanation
Indices: 4822056--4822446 Score: 213
Period size: 42 Copynumber: 9.6 Consensus size: 43
4822046 CAACCTTTGT
* * * *
4822056 TATTCTTGGCTTCCTCGTGAAGAGAAGTTAATC-TT---TGT-
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
* * * * *
4822094 TATTCTTGACTCCCTCATGATGA-AGAGTCAAGCTTTCAATAT-
1 TATTCTTGACTCCCTCGTGAAGAGA-AATCAATCTTTCAATGTG
* * **
4822136 TATTCTTGACTTCCTCATGAAGAGAGGTCAATCTTT---T-T-
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
* * *
4822174 TATTCTTGGCTTCCTCGTGAAGAGAAGTCAATC-TT---TGT-
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
*
4822212 TATTCTGGACTCCCTCGTGAAGA-AAAGTCAATCTTTCAATG-G
1 TATTCTTGACTCCCTCGTGAAGAGAAA-TCAATCTTTCAATGTG
* * * ** * * *
4822254 AAATCTTAACTTTCTCGTGAAGAGAATTCAATTTTTCGATGTTG
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATG-TG
*
4822298 TCTTTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGT-
1 T-ATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
* * *
4822341 TATTCTTGACTTCCTCGTAAAGAGAAGTCAATC-TT---TGT-
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
* * * * * * *
4822379 TATTCTTTACTCTCTCGTGGAGAGGAGTTAATCTTCCAATGT-
1 TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
* **
4822421 TATTCTTGGCTTTCTCGTGAAGAGAA
1 TATTCTTGACTCCCTCGTGAAGAGAA
4822447 GTTGATCGTT
Statistics
Matches: 279, Mismatches: 53, Indels: 38
0.75 0.14 0.10
Matches are distributed among these distances:
37 6 0.02
38 112 0.40
39 6 0.02
41 2 0.01
42 115 0.41
43 4 0.01
44 2 0.01
45 32 0.11
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (43 bp):
TATTCTTGACTCCCTCGTGAAGAGAAATCAATCTTTCAATGTG
Found at i:4822365 original size:87 final size:87
Alignment explanation
Indices: 4822214--4822372 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
4822204 ATCTTTGTTA
* *
4822214 TTCTGGACTCCCTCGTGAAGAAAAGTCAATCTTTCAATGGAAATCTTAACTTTCTCGTGAAGAGA
1 TTCTGGACTCCCTCGTGAAGAAAAGTCAATCTTTCAATGGAAATCTTAACTTCCTCGTAAAGAGA
*
4822279 ATTCAATTTTTCGATGTTGTCT
66 AGTCAATTTTTCGATGTTGTCT
* ** * *
4822301 TTCTTGACTCCCTCGTGAAGAGAAA-TCAATCTTTCAATGTTATTCTTGACTTCCTCGTAAAGAG
1 TTCTGGACTCCCTCGTGAAGA-AAAGTCAATCTTTCAATGGAAATCTTAACTTCCTCGTAAAGAG
4822365 AAGTCAAT
65 AAGTCAAT
4822373 CTTTGTTATT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
87 60 0.95
88 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (87 bp):
TTCTGGACTCCCTCGTGAAGAAAAGTCAATCTTTCAATGGAAATCTTAACTTCCTCGTAAAGAGA
AGTCAATTTTTCGATGTTGTCT
Found at i:4828893 original size:134 final size:135
Alignment explanation
Indices: 4828692--4829237 Score: 588
Period size: 134 Copynumber: 4.1 Consensus size: 135
4828682 AACCACGTTC
* * * *
4828692 GATTCGATCTTTCC-TGAAGAGTAGTGAAGTAGATCAAATATTTCTCGAGTCTGATATCCTCTAA
1 GATTCAATC-TTCCATGAAGAATAGTGAAGTAGATCAAATATTTCTCGAGTCTGATCTCCCCTAA
* * * *
4828756 AGAGTAGTGGAGCAGATTCTTCTTCTTTTAGATTTGGTTTTATTGAAGA-CAAGCGAAGTAAATC
65 AGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTACTGAAGAGCAAGTGAAGTAAATC
4828820 -ATGTTCT
130 GA--TTCT
* * * * * * *
4828827 -ATTCAATCTTTCATGAATAATATTTATGTAGATCAAAGATTTCTTGAGTCTGATCTCCCCTAAA
1 GATTCAATCTTCCATGAAGAATAGTGAAGTAGATCAAATATTTCTCGAGTCTGATCTCCCCTAAA
* * * *
4828891 GAGTAGTGAAGCAAATTCTTCATCTTTCAGATTTGGTCTTCCTGAAGAGC-AGTGAAGTAAATCG
66 GAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTACTGAAGAGCAAGTGAAGTAAATCG
4828955 ATTCT
131 ATTCT
* * * * * *
4828960 GATTCAATCCTCCTTGAAGAGA-AGTGAAGTGGATTAAA-ATTTTCTTGAGTCTGACCTCCCCTA
1 GATTCAATCTTCCATGAAGA-ATAGTGAAGTAGATCAAATA-TTTCTCGAGTCTGATCTCCCCTA
* ** * * *
4829023 AATAGTAGTGGAGCAGACGCTTCTTCTTTCAGATTTGGTCTTACTAAAGAGTAA-TGAAGCAAAT
64 AAGAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTACTGAAGAGCAAGTGAAGTAAAT
4829087 CGATTCT
129 CGATTCT
* * * * ** *
4829094 GATTCAATATTCCCTGAAGAATAGTGAAGTGGATCAAATTTTTCTCGAGTCAAATCTCCCTTAAA
1 GATTCAATCTTCCATGAAGAATAGTGAAGTAGATCAAATATTTCTCGAGTCTGATCTCCCCTAAA
* * * * *
4829159 GAGTAGTGGAGCATATTCTTCTTCTTTCATATTTGGCCTTCCTGAAGAGC-AGTGAAGCAAATCG
66 GAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTACTGAAGAGCAAGTGAAGTAAATCG
*
4829223 ATTCC
131 ATTCT
4829228 GATTCAATCT
1 GATTCAATCT
4829238 CCCCAAAAGA
Statistics
Matches: 341, Mismatches: 60, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
133 10 0.03
134 327 0.96
135 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (135 bp):
GATTCAATCTTCCATGAAGAATAGTGAAGTAGATCAAATATTTCTCGAGTCTGATCTCCCCTAAA
GAGTAGTGGAGCAGATTCTTCTTCTTTCAGATTTGGTCTTACTGAAGAGCAAGTGAAGTAAATCG
ATTCT
Found at i:4829131 original size:268 final size:267
Alignment explanation
Indices: 4828706--4829236 Score: 654
Period size: 268 Copynumber: 2.0 Consensus size: 267
4828696 CGATCTTTCC
* * * *
4828706 TGAAGAGTAGTGAAGTAGATCAAATATTTCTCGAGTCTGATATCCTCTAAAGAGTAGTGGAGCAG
1 TGAAGAGAAGTGAAGTAGATAAAATATTTCTCGAGTCTGACATCCCCTAAAGAGTAGTGGAGCAG
** * * * * * *
4828771 ATTCTTCTTCTTTTAGATTTGGTTTTATTGAAGACAAGCGAAGTAAATCATGTTCTATTCAATCT
66 ACGCTTCTTCTTTCAGATTTGGTCTTACTAAAGACAAGCGAAGCAAATCA-GTTCTATTCAATAT
* * * * * * **
4828836 TTCATGAATAATATTTATGTAGATCAAAGATTTCTTGAGTCTGATCTCCCCTAAAGAGTAGTGAA
130 TCCATGAAGAATAGTGAAGTAGATCAAAGATTTCTCGAGTCAAATCTCCCCTAAAGAGTAGTGAA
* * *
4828901 GCAAATTCTTCATCTTTCAGATTTGGTCTTCCTGAAGAGCAGTGAAGTAAATCGATTCTGATTCA
195 GCAAATTCTTCATCTTTCAGATTTGGCCTTCCTGAAGAGCAGTGAAGCAAATCGATTCCGATTCA
4828966 ATCCTCCT
260 ATCCTCCT
* * * *
4828974 TGAAGAGAAGTGAAGTGGATTAAAAT-TTTCTTGAGTCTGACCTCCCCTAAATAGTAGTGGAGCA
1 TGAAGAGAAGTGAAGTAGA-TAAAATATTTCTCGAGTCTGACATCCCCTAAAGAGTAGTGGAGCA
* *
4829038 GACGCTTCTTCTTTCAGATTTGGTCTTACTAAAGAGTAA-TGAAGCAAATC-GATTCTGATTCAA
65 GACGCTTCTTCTTTCAGATTTGGTCTTACTAAAGA-CAAGCGAAGCAAATCAG-TTCT-ATTCAA
* * ** *
4829101 TATTCCCTGAAGAATAGTGAAGTGGATCAAATTTTTCTCGAGTCAAATCTCCCTTAAAGAGTAGT
127 TATTCCATGAAGAATAGTGAAGTAGATCAAAGATTTCTCGAGTCAAATCTCCCCTAAAGAGTAGT
* * * *
4829166 GGAGCATATTCTTCTTCTTTCATATTTGGCCTTCCTGAAGAGCAGTGAAGCAAATCGATTCCGAT
192 GAAGCAAATTCTTCATCTTTCAGATTTGGCCTTCCTGAAGAGCAGTGAAGCAAATCGATTCCGAT
4829231 TCAATC
257 TCAATC
4829237 TCCCCAAAAG
Statistics
Matches: 221, Mismatches: 38, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
266 1 0.00
267 4 0.02
268 209 0.95
269 7 0.03
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (267 bp):
TGAAGAGAAGTGAAGTAGATAAAATATTTCTCGAGTCTGACATCCCCTAAAGAGTAGTGGAGCAG
ACGCTTCTTCTTTCAGATTTGGTCTTACTAAAGACAAGCGAAGCAAATCAGTTCTATTCAATATT
CCATGAAGAATAGTGAAGTAGATCAAAGATTTCTCGAGTCAAATCTCCCCTAAAGAGTAGTGAAG
CAAATTCTTCATCTTTCAGATTTGGCCTTCCTGAAGAGCAGTGAAGCAAATCGATTCCGATTCAA
TCCTCCT
Done.