Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 78
Found at i:6940685 original size:18 final size:18
Alignment explanation
Indices: 6940662--6940708 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
6940652 AAGGTCTATT
*
6940662 GTATGTGCATTGAGAGTC
1 GTATGTGCATTAAGAGTC
6940680 GTATGTGCATTAAGAGTC
1 GTATGTGCATTAAGAGTC
*
6940698 GTAGGTGCATT
1 GTATGTGCATT
6940709 TTGACATACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.23, C:0.11, G:0.32, T:0.34
Consensus pattern (18 bp):
GTATGTGCATTAAGAGTC
Found at i:6943650 original size:22 final size:22
Alignment explanation
Indices: 6943623--6943667 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
6943613 CAACGGTCAC
6943623 GGTCAACGGTCGGGTCGAGTCG
1 GGTCAACGGTCGGGTCGAGTCG
* *
6943645 GGTCAATGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGAGTCG
6943667 G
1 G
6943668 TCGGGTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.20, G:0.49, T:0.20
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGAGTCG
Found at i:6943660 original size:5 final size:5
Alignment explanation
Indices: 6943630--6943684 Score: 67
Period size: 5 Copynumber: 10.8 Consensus size: 5
6943620 CACGGTCAAC
* *
6943630 GGTCG GGTCG AGTCG GGTCAAT GGTCG GGTCG GGTC- GGTCG GGTCG GGTCG
1 GGTCG GGTCG GGTCG GGTC--G GGTCG GGTCG GGTCG GGTCG GGTCG GGTCG
6943681 GGTC
1 GGTC
6943685 AGACCGGTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
4 4 0.09
5 35 0.81
7 4 0.09
ACGTcount: A:0.05, C:0.20, G:0.53, T:0.22
Consensus pattern (5 bp):
GGTCG
Found at i:6943705 original size:19 final size:19
Alignment explanation
Indices: 6943683--6943740 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
6943673 TCGGGTCGGG
6943683 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
* *
6943702 TCAGTCCGGTCAAACCGTT
1 TCAGACCGGTCAAACCGGT
*
6943721 TC-GAACCGGTTAAACCGGT
1 TCAG-ACCGGTCAAACCGGT
6943740 T
1 T
6943741 TTCCAGCTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
18 1 0.03
19 32 0.97
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:6950949 original size:17 final size:17
Alignment explanation
Indices: 6950927--6950959 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
6950917 GGTCACGGTC
6950927 AACGGTCGGGTCGGGTT
1 AACGGTCGGGTCGGGTT
6950944 AACGGTCGGGTCGGGT
1 AACGGTCGGGTCGGGT
6950960 CAGACCGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.18, G:0.48, T:0.21
Consensus pattern (17 bp):
AACGGTCGGGTCGGGTT
Found at i:6950981 original size:19 final size:19
Alignment explanation
Indices: 6950959--6951010 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
6950949 TCGGGTCGGG
*
6950959 TCAGACCGGTCAAACTGAT
1 TCAGACCGGTCAAACCGAT
*
6950978 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGAT
6950997 TC-GAACCGGTCAAA
1 TCAG-ACCGGTCAAA
6951011 ACCGGTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 1 0.03
19 29 0.97
ACGTcount: A:0.31, C:0.29, G:0.23, T:0.17
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGAT
Found at i:6956146 original size:3 final size:3
Alignment explanation
Indices: 6956131--6956189 Score: 52
Period size: 3 Copynumber: 20.3 Consensus size: 3
6956121 TATTTATATA
* * **
6956131 AAT AAT AAA AAT AAT AAT AAT GA- AAT AAT AATT AA- AGC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
6956175 AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT A
6956190 TTGCAAATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
2 4 0.09
3 38 0.84
4 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:6956198 original size:26 final size:28
Alignment explanation
Indices: 6956139--6956200 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
6956129 TAAATAATAA
*
6956139 AAATAATAATAATGAAATAATAATTAAAGC
1 AAATAATAATAATAAAATAATAATT--AGC
6956169 -AATAATAATAATAAAATAAT-ATT-GC
1 AAATAATAATAATAAAATAATAATTAGC
6956194 AAATAAT
1 AAATAAT
6956201 GATTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 2 0.07
26 6 0.20
28 3 0.10
29 19 0.63
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
AAATAATAATAATAAAATAATAATTAGC
Found at i:6956266 original size:29 final size:29
Alignment explanation
Indices: 6956217--6956278 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
6956207 AATAAAAGGA
* *
6956217 ATTAAAAATATAGTAT-TAAAATGTAAAAT
1 ATTAAAAATATAATATCAAAAATG-AAAAT
6956246 ATTAAAAATA-AATAGTCAAAAATGAAAAT
1 ATTAAAAATATAATA-TCAAAAATGAAAAT
6956275 -TTAA
1 ATTAA
6956279 TGATTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 7 0.24
29 16 0.55
30 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (29 bp):
ATTAAAAATATAATATCAAAAATGAAAAT
Found at i:6957491 original size:3 final size:3
Alignment explanation
Indices: 6957477--6957592 Score: 139
Period size: 3 Copynumber: 39.0 Consensus size: 3
6957467 GCCTGAAGTG
*
6957477 TAA TAA -AA TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
6957524 TAA TAA TAA TAA TAA TAA AAA CAA AAA TAA TAA TAG TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6957572 -ATA TAA TAA -ATA TAA TAA TAA
1 TA-A TAA TAA TA-A TAA TAA TAA
6957593 AAAACCAAAT
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
2 4 0.04
3 92 0.94
4 2 0.02
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:6958120 original size:113 final size:113
Alignment explanation
Indices: 6957937--6958702 Score: 1090
Period size: 113 Copynumber: 6.6 Consensus size: 113
6957927 AGAATCATGC
* *
6957937 AAAAGATTGAATAAGTTCTTCTCATTATGAACTT-TTCCTTCATTCTTCAGATGAGTTCTTCTCA
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTT-CTTCTTTCTTCAGATGAGTTCTTCTCA
* * * * * * ** *
6958001 TTATGAACTC-TCTCTGGAAAAGTTGATCCATCGAGTGATAAATTTGAGCA
64 TTATGAACTCGAC-CTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
6958051 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
* * *
6958116 ATGAACTCGCCCTGGCAATGCTGATCCATCGAATGATAAATTCAAGCG
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
6958164 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 AAAAGTTGAACAAGTTCTTCTCATTATGAA--------C--T-T---CTTCTTC-T--TTCTTCA
* *
6958229 GATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGTTGATCCATCGAATGATGAATTCAAGCG
49 GATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* * *
6958294 AAAATTTGAGCAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
6958359 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGC-
66 ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
* *
6958406 AAGAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AA-AAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCAT
6958471 TATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
65 TATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
6958520 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-TCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCT-TTCTTCAGATGAGTTCTTCTCAT
* *
6958584 TATTAACTCGACCTGGTAATGCTGATCCATCGAATAATGAATTCAAGCG
65 TATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
*
6958633 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
6958698 ATGAA
66 ATGAA
6958703 TTCTTCCAGA
Statistics
Matches: 602, Mismatches: 27, Indels: 47
0.89 0.04 0.07
Matches are distributed among these distances:
112 2 0.00
113 472 0.78
114 10 0.02
116 7 0.01
119 1 0.00
120 1 0.00
121 1 0.00
122 1 0.00
123 1 0.00
124 1 0.00
127 7 0.01
128 1 0.00
130 97 0.16
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (113 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCGACCTGGTAATGCTGATCCATCGAATGATGAATTCAAGCG
Found at i:6958215 original size:130 final size:130
Alignment explanation
Indices: 6958065--6958331 Score: 480
Period size: 130 Copynumber: 2.1 Consensus size: 130
6958055 GTTGAACAAG
* *
6958065 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCGCCCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
6958130 GCAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAAC
66 GCAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAAC
6958195 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
* * * *
6958260 GCAATGTTGATCCATCGAATGATGAATTCAAGCGAAAATTTGAGCAAGTTCTTCTCATTATGAAC
66 GCAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAAC
6958325 TTCTTCT
1 TTCTTCT
6958332 TCCTTCTTCA
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (130 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
GCAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAAC
Found at i:6958220 original size:20 final size:17
Alignment explanation
Indices: 6958178--6958218 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
6958168 GTTGAACAAG
6958178 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
6958195 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
6958212 TTCTTCT
1 TTCTTCT
6958219 TCCTTCTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.05, T:0.51
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:6958228 original size:243 final size:243
Alignment explanation
Indices: 6957952--6958675 Score: 1022
Period size: 243 Copynumber: 3.0 Consensus size: 243
6957942 ATTGAATAAG
*
6957952 TTCTTCTCATTATGAACTTTTCCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTC-TCTCT
1 TTCTTCTCATTATGAACTTTTCCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCGAC-CT
* **
6958016 GGAAAAGTTGATCCATCGAGTGATAAATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAA
65 GGAAAAGTTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAA
* *
6958081 CTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCGCCCTGGCAATGCTGATCCATC
130 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATC
6958146 GAATGATAAATTCAAGCGAA-AAGTTGAACAAGTTCTTCTCATTATGAAC
195 GAATGATAAATTCAAGC-AAGAAGTTGAACAAGTTCTTCTCATTATGAAC
*
6958195 TTCTTCTCATTATGAACTTCTT-CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCT
1 TTCTTCTCATTATGAACTT-TTCCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCT
* * * * * *
6958259 GGCAATGTTGATCCATCGAATGATGAATTCAAGCGAAAATTTGAGCAAGTTCTTCTCATTATGAA
65 GGAAAAGTTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAA
*
6958324 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGTAATGCTGATCCATC
130 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATC
* *
6958389 GAATGATGAATTCAAGCAAGAAGTTGAACAAGTTCTTCTTATTATGAA-
195 GAATGATAAATTCAAGCAAGAAGTTGAACAAGTTCTTCTCATTATGAAC
6958437 --C-T-TC--T-T---C--TT-C--C-TTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
1 TTCTTCTCATTATGAACTTTTCCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
* * * * *
6958486 GTAATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAAC
66 GAAAAGTTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAAC
* * *
6958551 TTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATTAACTCGACCTGGTAATGCTGATCCATCG
131 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATCG
* *
6958616 AATAATGAATTCAAGCGAA-AAGTTGAACAAGTTCTTCTCATTATGAAC
196 AATGATAAATTCAAGC-AAGAAGTTGAACAAGTTCTTCTCATTATGAAC
6958664 TTCTTCTTCATT
1 TTCTTC-TCATT
6958676 CTTCAGATGA
Statistics
Matches: 445, Mismatches: 24, Indels: 33
0.89 0.05 0.07
Matches are distributed among these distances:
226 204 0.46
227 3 0.01
229 4 0.01
230 1 0.00
232 3 0.01
234 1 0.00
235 1 0.00
236 1 0.00
238 2 0.00
239 1 0.00
240 1 0.00
242 2 0.00
243 218 0.49
244 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (243 bp):
TTCTTCTCATTATGAACTTTTCCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTG
GAAAAGTTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATCG
AATGATAAATTCAAGCAAGAAGTTGAACAAGTTCTTCTCATTATGAAC
Found at i:6958386 original size:356 final size:339
Alignment explanation
Indices: 6957937--6958702 Score: 1140
Period size: 356 Copynumber: 2.2 Consensus size: 339
6957927 AGAATCATGC
*
6957937 AAAAGATTGAATAAGTTCTTCTCATTATGAACTT-TTCCTTCATTCTTCAGATGAGTTCTTCTCA
1 AAAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTT-CTTCATTCTTCAGATGAGTTCTTCTCA
* * * **
6958001 TTATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATAAATTTGAGCAAAAAGTTGAACAAGT
64 TTATGAACTCACTCTGGAAAAGCTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGT
* *
6958066 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTCGCCCTGG
129 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGG
6958131 CAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACT
194 CAATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAA--
6958196 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGG
257 ------C--T-T---CTTC-T-TT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGG
* *
6958261 CAATGTTGATCCATCGAATGATGAATTCAAGCG
307 CAATGCTGATCCATCGAATAATGAATTCAAGCG
* * *
6958294 AAAATTTGAGCAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
* * * *
6958359 ATGAACTCGAC-CTGGTAATGCTGATCCATCGAATGATGAATTCAAGCAAGAAGTTGAACAAGTT
66 ATGAACTC-ACTCTGGAAAAGCTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTT
* *
6958423 CTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGT
130 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGC
*
6958488 AATGCTGATCCATCGAATGATGAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
195 AATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
* *
6958553 CTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATTAACTCGACCTGGTAATGCTGATCCATCGAA
260 CTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATCGAA
6958618 TAATGAATTCAAGCG
325 TAATGAATTCAAGCG
6958633 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
6958698 ATGAA
66 ATGAA
6958703 TTCTTCCAGA
Statistics
Matches: 382, Mismatches: 25, Indels: 22
0.89 0.06 0.05
Matches are distributed among these distances:
339 136 0.36
340 2 0.01
341 1 0.00
342 4 0.01
345 1 0.00
346 1 0.00
348 1 0.00
356 229 0.60
357 7 0.02
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (339 bp):
AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATT
ATGAACTCACTCTGGAAAAGCTGATCCATCGAATGATAAATTCAAGCAAAAAGTTGAACAAGTTC
TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCA
ATGCTGATCCATCGAATGATAAATTCAAGCGAAAAGTTGAACAAGTTCTTCTCATTATGAACTTC
TTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGACCTGGCAATGCTGATCCATCGAAT
AATGAATTCAAGCG
Found at i:6959166 original size:22 final size:22
Alignment explanation
Indices: 6959141--6959195 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
6959131 GATAAAGCTT
* *
6959141 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTAAAAAGAGAATCTA
*
6959163 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
6959185 TCATCTTTAAA
1 TCATCTTTAAA
6959196 GAGTGTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:6959645 original size:54 final size:54
Alignment explanation
Indices: 6959563--6959772 Score: 339
Period size: 54 Copynumber: 3.9 Consensus size: 54
6959553 AGAATAGCAG
* ** *
6959563 GTTCGTAAAACATTTGACAGCGTATTCATCCTTTCCTGTGGCTTCTTCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
*
6959617 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
* *
6959671 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGCTCAGAC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
* *
6959725 GTTCGTAAAGCATTTGACAACACATTCATCCTTTTCTGTGGCTTCTGC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGC
6959773 CAAGATTTCT
Statistics
Matches: 147, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 147 1.00
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
Found at i:6962043 original size:114 final size:114
Alignment explanation
Indices: 6961843--6962064 Score: 365
Period size: 114 Copynumber: 1.9 Consensus size: 114
6961833 ACGATCATGC
* **
6961843 AATTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTTCTACTGAACCAAATCAGACAACTCAAA
1 AATTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTCTACCAAACCAAATCAGACAACTCAAA
6961908 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
66 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
* * * *
6961957 AATTCATCTTTCAAATCCAATGATTGGTTTTGGGG-TTCATACCAAATCAGATCAGATAACTCAA
1 AATTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTC-TACCAAACCAAATCAGACAACTCAA
6962021 AGAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
65 AGAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
6962065 AGAGAACGTG
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
113 3 0.03
114 97 0.97
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (114 bp):
AATTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTCTACCAAACCAAATCAGACAACTCAAA
GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
Found at i:6962436 original size:161 final size:161
Alignment explanation
Indices: 6962171--6962492 Score: 608
Period size: 161 Copynumber: 2.0 Consensus size: 161
6962161 TGCTATTACA
*
6962171 CTGAAAATAGGCTATATTCATAATATGTCAATTGAGAACAGATTTCCTCTTATCTTGTTTTCTCC
1 CTGAAAATAGGCTATATTCATAATATGCCAATTGAGAACAGATTTCCTCTTATCTTGTTTTCTCC
6962236 ACGAACTATACATGATATTTTTCCATTGACAAAGAAATGATGGCCTTCCTGGGATCCAAAAACAA
66 ACGAACTATACATGATATTTTTCCATTGACAAAGAAATGATGGCCTTCCTGGGATCCAAAAACAA
*
6962301 AGTTGAACTATTTATAAACATGTAGAGGAAG
131 AGTTGAACTATTTATAAACATGTACAGGAAG
6962332 CTGAAAATAGGCTATATTCATAATATGCCAATTGAGAACAGATTTCCTCTTATCTTGTTTTCTCC
1 CTGAAAATAGGCTATATTCATAATATGCCAATTGAGAACAGATTTCCTCTTATCTTGTTTTCTCC
*
6962397 ACGAACTATACATGATATTTTTCCATTGACAAAGAAATGATGGCCTTCCTGGGATCCAAGAACAA
66 ACGAACTATACATGATATTTTTCCATTGACAAAGAAATGATGGCCTTCCTGGGATCCAAAAACAA
*
6962462 AGTTGAACTGTTTATAAACATGTACAGGAAG
131 AGTTGAACTATTTATAAACATGTACAGGAAG
6962493 TTCCAAATTG
Statistics
Matches: 157, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 157 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (161 bp):
CTGAAAATAGGCTATATTCATAATATGCCAATTGAGAACAGATTTCCTCTTATCTTGTTTTCTCC
ACGAACTATACATGATATTTTTCCATTGACAAAGAAATGATGGCCTTCCTGGGATCCAAAAACAA
AGTTGAACTATTTATAAACATGTACAGGAAG
Found at i:6964461 original size:22 final size:22
Alignment explanation
Indices: 6964430--6964497 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
6964420 TCTTGATTCA
*
6964430 ATTTTCCTTTTTCTTCTTCTTT
1 ATTTTTCTTTTTCTTCTTCTTT
* * *
6964452 TTTTTTCTTTTTTTTCTT-TTCC
1 ATTTTTCTTTTTCTTCTTCTT-T
6964474 ATTTTTCTTTTTTCCTTCTTCTTT
1 ATTTTTC-TTTTT-CTTCTTCTTT
6964498 CTTTGCTGGA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
21 2 0.06
22 21 0.60
23 5 0.14
24 5 0.14
25 2 0.06
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (22 bp):
ATTTTTCTTTTTCTTCTTCTTT
Found at i:6967742 original size:14 final size:14
Alignment explanation
Indices: 6967709--6967761 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
6967699 TGACATAAAA
* *
6967709 AAATGCAAAGATGCC
1 AAATGTAAATATG-C
6967724 AAATGTAAATATGC
1 AAATGTAAATATGC
* *
6967738 AAATGTAAAAATGT
1 AAATGTAAATATGC
6967752 AAATGTAAAT
1 AAATGTAAAT
6967762 TATTTAATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
14 22 0.67
15 11 0.33
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.25
Consensus pattern (14 bp):
AAATGTAAATATGC
Found at i:6969282 original size:20 final size:20
Alignment explanation
Indices: 6969244--6969282 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
6969234 ATAAATAATG
* * *
6969244 AAAATAAAATACTTGAAAAT
1 AAAATAAAAAAATTAAAAAT
6969264 AAAATAAAAAAATTAAAAA
1 AAAATAAAAAAATTAAAAA
6969283 ATAATATACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (20 bp):
AAAATAAAAAAATTAAAAAT
Found at i:6969314 original size:26 final size:28
Alignment explanation
Indices: 6969271--6969337 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
6969261 AATAAAATAA
*
6969271 AAAAATTA-AAAAATAAT-A-TACATAT
1 AAAAATTATGAAAATAATAAGTACATAT
* *
6969296 AAATATTATGAAAATAATAAGTATATAT
1 AAAAATTATGAAAATAATAAGTACATAT
*
6969324 AAAAATTTTGAAAA
1 AAAAATTATGAAAA
6969338 AGAAAGAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 7 0.21
26 8 0.24
27 1 0.03
28 18 0.53
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (28 bp):
AAAAATTATGAAAATAATAAGTACATAT
Found at i:6970158 original size:3 final size:3
Alignment explanation
Indices: 6970150--6970208 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
6970140 TATTTATATA
* **
6970150 AAT AAT AAT AAT AAT AAT AAT GA- AAT AAT AATT AA- AGC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
6970194 AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT A
6970209 TTGCAAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
2 4 0.09
3 40 0.85
4 3 0.06
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:6970285 original size:29 final size:29
Alignment explanation
Indices: 6970236--6970297 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
6970226 AATAAAAGGA
* *
6970236 ATTAAAAATATAGTAT-TAAAATGTAAAAT
1 ATTAAAAATATAATATCAAAAATG-AAAAT
6970265 ATTAAAAATA-AATAGTCAAAAATGAAAAT
1 ATTAAAAATATAATA-TCAAAAATGAAAAT
6970294 -TTAA
1 ATTAA
6970298 TGATTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 7 0.24
29 16 0.55
30 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (29 bp):
ATTAAAAATATAATATCAAAAATGAAAAT
Found at i:6971472 original size:3 final size:3
Alignment explanation
Indices: 6971458--6971537 Score: 83
Period size: 3 Copynumber: 27.0 Consensus size: 3
6971448 GCCTGAAGTG
* * * *
6971458 TAA TAA -AA TAA TAA TAT TAA TAA TAA AAA TAA TAA TAA TAG TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
6971505 TAA TAA AAA TAA AAA TAA TAA -ATA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
6971538 AAAACCAAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
2 3 0.05
3 58 0.94
4 1 0.02
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:6971535 original size:27 final size:26
Alignment explanation
Indices: 6971462--6971540 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 26
6971452 GAAGTGTAAT
6971462 AAAATAATAATATTAATAATAAAAATA
1 AAAATAATAATA-TAATAATAAAAATA
* * *
6971489 ATAATAATAGTAATAGTAATAAAAATA
1 AAAATAATAAT-ATAATAATAAAAATA
6971516 AAAATAATAAATATAATAATAAAAA
1 AAAATAAT-AATATAATAATAAAAA
6971541 ACCAAATGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (26 bp):
AAAATAATAATATAATAATAAAAATA
Found at i:6973853 original size:31 final size:31
Alignment explanation
Indices: 6973818--6973894 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
6973808 GACAAAATTA
*
6973818 AAAGTTCAGTGGTATAAACGAGTTAGCAGAC
1 AAAGTTCAGTGGTATAAACAAGTTAGCAGAC
6973849 AAAGTTCAGTGGTATAAACAAGTTAGCAGAC
1 AAAGTTCAGTGGTATAAACAAGTTAGCAGAC
*
6973880 AAAGTTCAGTAGTAT
1 AAAGTTCAGTGGTAT
6973895 CTAAAGTAGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGTTCAGTGGTATAAACAAGTTAGCAGAC
Found at i:6978407 original size:22 final size:22
Alignment explanation
Indices: 6978377--6978424 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
6978367 TCGTTTGATA
* *
6978377 TTATTTAACGATTTAATGTGTT
1 TTATATAACAATTTAATGTGTT
* *
6978399 TTATATAACAATTTATTTTGTT
1 TTATATAACAATTTAATGTGTT
6978421 TTAT
1 TTAT
6978425 GTGAATGTCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.58
Consensus pattern (22 bp):
TTATATAACAATTTAATGTGTT
Found at i:6981311 original size:15 final size:15
Alignment explanation
Indices: 6981291--6981320 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6981281 TTCGAATATA
6981291 GAATGAATTAAGGAT
1 GAATGAATTAAGGAT
6981306 GAATGAATTAAGGAT
1 GAATGAATTAAGGAT
6981321 TCTTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27
Consensus pattern (15 bp):
GAATGAATTAAGGAT
Found at i:6983336 original size:6 final size:6
Alignment explanation
Indices: 6983317--6983367 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
6983307 AAAAGTAAAC
*
6983317 AAAA-A AAAACA AAAAGA AAAA-A AAGAA-A AAAAGA AAAAGA AAAAGCA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA-AAGA AAAAGA AAAAGA AAAAG-A
6983364 AAAA
1 AAAA
6983368 AGAAGAAGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
5 9 0.22
6 27 0.66
7 5 0.12
ACGTcount: A:0.86, C:0.04, G:0.10, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:6983336 original size:14 final size:13
Alignment explanation
Indices: 6983298--6983371 Score: 67
Period size: 14 Copynumber: 5.2 Consensus size: 13
6983288 TATTTTGTAA
6983298 AAAACAAAAAAAAG
1 AAAA-AAAAAAAAG
*
6983312 TAAACAAAAAAAAACA
1 -AAA-AAAAAAAAA-G
6983328 AAAAGAAAAAAAAG
1 AAAA-AAAAAAAAG
6983342 AAAAAAAGAAAAAG
1 AAAAAAA-AAAAAG
*
6983356 AAAAAGCAAAAAAG
1 AAAAA-AAAAAAAG
6983370 AA
1 AA
6983372 GAAGCAAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
13 3 0.06
14 24 0.47
15 23 0.45
16 1 0.02
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.01
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:6983337 original size:30 final size:29
Alignment explanation
Indices: 6983297--6983374 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 29
6983287 ATATTTTGTA
*
6983297 AAAAACAAAAAAAAGTAAACAAAA-AAAAAC
1 AAAAAGAAAAAAAAG-AAA-AAAAGAAAAAC
*
6983327 AAAAAGAAAAAAAAGAAAAAAAGAAAAAG
1 AAAAAGAAAAAAAAGAAAAAAAGAAAAAC
6983356 AAAAAGCAAAAAAGAAGAA
1 AAAAAG-AAAAAA-AAGAA
6983375 GCAAAGATCG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
28 4 0.09
29 14 0.33
30 20 0.47
31 5 0.12
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.01
Consensus pattern (29 bp):
AAAAAGAAAAAAAAGAAAAAAAGAAAAAC
Found at i:6983345 original size:23 final size:23
Alignment explanation
Indices: 6983296--6983368 Score: 87
Period size: 23 Copynumber: 3.1 Consensus size: 23
6983286 GATATTTTGT
6983296 AAAAAACAAAAA-AAAGTAAACAAA
1 AAAAAACAAAAAGAAA--AAACAAA
6983320 AAAAAACAAAAAGAAAAAA-AAGA
1 AAAAAACAAAAAGAAAAAACAA-A
* *
6983343 AAAAAAGAAAAAGAAAAAGCAAA
1 AAAAAACAAAAAGAAAAAACAAA
6983366 AAA
1 AAA
6983369 GAAGAAGCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.05
23 25 0.57
24 14 0.32
25 3 0.07
ACGTcount: A:0.85, C:0.05, G:0.08, T:0.01
Consensus pattern (23 bp):
AAAAAACAAAAAGAAAAAACAAA
Found at i:6983367 original size:8 final size:7
Alignment explanation
Indices: 6983305--6983371 Score: 50
Period size: 7 Copynumber: 9.3 Consensus size: 7
6983295 TAAAAAACAA
6983305 AAAAAAG
1 AAAAAAG
6983312 TAAACAAA-
1 -AAA-AAAG
*
6983320 AAAAAAC
1 AAAAAAG
*
6983327 AAAAAGAA
1 AAAAA-AG
6983335 AAAAAAG
1 AAAAAAG
6983342 AAAAAA-
1 AAAAAAG
6983348 AGAAAAAG
1 A-AAAAAG
6983356 -AAAAAG
1 AAAAAAG
6983362 CAAAAAAG
1 -AAAAAAG
6983370 AA
1 AA
6983372 GAAGCAAAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
6 10 0.20
7 22 0.44
8 15 0.30
9 3 0.06
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.01
Consensus pattern (7 bp):
AAAAAAG
Found at i:6983374 original size:23 final size:22
Alignment explanation
Indices: 6983297--6983367 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 22
6983287 ATATTTTGTA
*
6983297 AAAAAC-AAAAAAAAGTAAACAAAA
1 AAAAACAAAAAAAAAG--AA-AAAG
*
6983321 AAAAACAAAAAGAAA-AAAAAG
1 AAAAACAAAAAAAAAGAAAAAG
*
6983342 -AAAA-AAAGAAAAAGAAAAAG
1 AAAAACAAAAAAAAAGAAAAAG
6983362 CAAAAA
1 -AAAAA
6983368 AGAAGAAGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
19 7 0.18
20 10 0.26
21 3 0.08
22 6 0.15
24 6 0.15
25 7 0.18
ACGTcount: A:0.85, C:0.06, G:0.08, T:0.01
Consensus pattern (22 bp):
AAAAACAAAAAAAAAGAAAAAG
Found at i:6983376 original size:14 final size:14
Alignment explanation
Indices: 6983320--6983379 Score: 59
Period size: 14 Copynumber: 4.2 Consensus size: 14
6983310 AGTAAACAAA
* *
6983320 AAAAAACAAAAAGAA
1 AAAAAAGAAAAAG-C
*
6983335 AAAAAAGAAAAA-A
1 AAAAAAGAAAAAGC
6983348 AGAAAAAGAAAAAGC
1 A-AAAAAGAAAAAGC
*
6983363 AAAAAAGAAGAAGC
1 AAAAAAGAAAAAGC
6983377 AAA
1 AAA
6983380 GATCGGATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
13 2 0.05
14 26 0.65
15 12 0.30
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAGC
Found at i:6983381 original size:31 final size:30
Alignment explanation
Indices: 6983296--6983381 Score: 102
Period size: 29 Copynumber: 2.8 Consensus size: 30
6983286 GATATTTTGT
* *
6983296 AAAAAACAAAAAAAAGTAAACAAAAAAAAAC
1 AAAAAGCAAAAAAAAG-AAACAAAGAAAAAC
* *
6983327 AAAAAG-AAAAAAAAGAAAAAAAGAAAAAG
1 AAAAAGCAAAAAAAAGAAACAAAGAAAAAC
*
6983356 AAAAAGCAAAAAAGAAGAAGCAAAGA
1 AAAAAGCAAAAAA-AAGAAACAAAGA
6983382 TCGGATGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
29 17 0.36
30 15 0.32
31 15 0.32
ACGTcount: A:0.81, C:0.06, G:0.12, T:0.01
Consensus pattern (30 bp):
AAAAAGCAAAAAAAAGAAACAAAGAAAAAC
Found at i:6985637 original size:40 final size:40
Alignment explanation
Indices: 6985592--6985688 Score: 185
Period size: 40 Copynumber: 2.4 Consensus size: 40
6985582 ATTTAATACG
6985592 AAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 AAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
*
6985632 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 AAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
6985672 AAAGATTTTATCTCACT
1 AAAGATTTTATCTCACT
6985689 TGAGACAGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (40 bp):
AAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
Found at i:6985808 original size:77 final size:76
Alignment explanation
Indices: 6985718--6985861 Score: 200
Period size: 77 Copynumber: 1.9 Consensus size: 76
6985708 ACAAATTTTG
*
6985718 TCTCCCTTGAGATGGTTTTTCTTAAAACCAAATTCAGTCTTGCTTGAGACAACTTTCCCTT-GAA
1 TCTCACTTGAGATGGTTTTTCTTAAAACCAAATT-AGTCTTGCTTGAGACAA-TTTCCCTTCGAA
6985782 ACAAGAAATTGAA
64 ACAAGAAATTGAA
** * * * *
6985795 TCTCACTTGAGATGGTTTTTCTTAAAACTTACTTTGTCTTGCTTGAGATAATTTTCCTTCGAAAC
1 TCTCACTTGAGATGGTTTTTCTTAAAACCAAATTAGTCTTGCTTGAGACAATTTCCCTTCGAAAC
6985860 AA
66 AA
6985862 AATTTATCTC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
75 7 0.12
76 22 0.37
77 30 0.51
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (76 bp):
TCTCACTTGAGATGGTTTTTCTTAAAACCAAATTAGTCTTGCTTGAGACAATTTCCCTTCGAAAC
AAGAAATTGAA
Found at i:6986379 original size:136 final size:136
Alignment explanation
Indices: 6986133--6986618 Score: 678
Period size: 136 Copynumber: 3.6 Consensus size: 136
6986123 AGATAAACAT
* * *
6986133 ATCAACATTTCCAGT-ACAAAGTTCATAATGAGAAGAACTCATCCAACAGAGGGAGAAGAAGTTC
1 ATCAACATTTCCAATGA-AGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTC
* *
6986197 ATAATGAGAAGAGCTTGTTCCACCTATCACTCGATTCACGACATTTCGAATCAGTGACACCTCAT
65 ATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCAT
6986262 TTGAGGG
130 TTGAGGG
*
6986269 ATCAACATTTCCAGTGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
1 ATCAACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
* ** *
6986334 TAATGAGAAGAGCTTGTTCGGCCTATCACTCGATTCACGGTATTTCGAATCAGTGACGCCTCACT
66 TAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCATT
6986399 TGAGGG
131 TGAGGG
** * * * * *
6986405 ATTGATATTTCCAATGGAGAGTTCATAATGAGAAGAACTTATCCGAAAGAGGAAGAAGAAGTTCA
1 ATCAACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
* * * *
6986470 TAATGAGAAGAGCTTATTCGACCTATCACTCGATTCATGACATTTTGAATCAGTGACGCCTCGTT
66 TAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCATT
6986535 TGAGGG
131 TGAGGG
** * *
6986541 ATTGACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCGTCCTA-A-A-GGAG-A-AAGTTCA
1 ATCAACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
* *
6986601 TAATGCGAAGAACTTGTT
66 TAATGAGAAGAGCTTGTT
6986619 TCTTTCAAAT
Statistics
Matches: 316, Mismatches: 33, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
131 22 0.07
132 1 0.00
133 3 0.01
134 1 0.00
135 1 0.00
136 287 0.91
137 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (136 bp):
ATCAACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCA
TAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGACATTTCGAATCAGTGACGCCTCATT
TGAGGG
Found at i:6987139 original size:117 final size:109
Alignment explanation
Indices: 6986894--6987185 Score: 351
Period size: 117 Copynumber: 2.6 Consensus size: 109
6986884 AGGGATTGAA
*
6986894 ATTTTCAA--AAGAGTTCATAATGAGAAGAACTCGTCCTAAAGG-AG-A-AAGTTCATAATGAGA
1 ATTTTCAATGAAGAGTTCATAATGAGAAGAACTCATCC-AAAGGAAGAAGAAGTTCATAATGAGA
6986954 AGAACTTGTTCCTTTCAAGTCCATCACAAAAAGAGATGGATCAAC
65 AGAACTTGTTCCTTTCAAGTCCATCACAAAAAGAGATGGATCAAC
* * *
6986999 ATTTTCAGTGGAGAGTTCATAATGAGAATAACTCATCCAATGAGGAAGAAGAAGTTCATAATGAG
1 ATTTTCAATGAAGAGTTCATAATGAGAAGAACTCATCCAA--AGGAAGAAGAAGTTCATAATGAG
* * * * * *
6987064 AAGAACTTGTTCAACCTTGGTTCGATTCCATCACAGAAGGAGGTGGATCAAT
64 AAGAACTTGTT---CC-T--TTCAAGTCCATCACAAAAAGAGATGGATCAAC
*
6987116 ATTTTCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACAAGAGAGAAGAAGTTCATAATGAG
1 ATTTTCAATGAAGAGTTCATAATGAGAAGAACTCATCCAA-AGGA-AGAAGAAGTTCATAATGAG
6987181 AAGAA
64 AAGAA
6987186 ACGAAGGATA
Statistics
Matches: 158, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
105 7 0.04
106 2 0.01
107 25 0.16
108 3 0.02
109 2 0.01
110 1 0.01
111 25 0.16
114 2 0.01
115 1 0.01
116 3 0.02
117 87 0.55
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (109 bp):
ATTTTCAATGAAGAGTTCATAATGAGAAGAACTCATCCAAAGGAAGAAGAAGTTCATAATGAGAA
GAACTTGTTCCTTTCAAGTCCATCACAAAAAGAGATGGATCAAC
Found at i:6987341 original size:3 final size:3
Alignment explanation
Indices: 6987335--6987377 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
6987325 GTTAAAAAAA
*
6987335 TAT TAT TA- AAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6987378 AGTGTGTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 1 0.03
3 36 0.97
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:6988777 original size:24 final size:24
Alignment explanation
Indices: 6988716--6988780 Score: 112
Period size: 24 Copynumber: 2.7 Consensus size: 24
6988706 TTATTTGTGT
* *
6988716 TTATTATTATATTAAATGGTAAAA
1 TTATCATTATATTCAATGGTAAAA
6988740 TTATCATTATATTCAATGGTAAAA
1 TTATCATTATATTCAATGGTAAAA
6988764 TTATCATTATATTCAAT
1 TTATCATTATATTCAAT
6988781 TGATGTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (24 bp):
TTATCATTATATTCAATGGTAAAA
Found at i:7000420 original size:11 final size:10
Alignment explanation
Indices: 7000400--7000500 Score: 60
Period size: 10 Copynumber: 9.8 Consensus size: 10
7000390 TACTTCGCCT
7000400 GAAAAAAAAA
1 GAAAAAAAAA
7000410 GAAAGAAAAAAA
1 G-AA-AAAAAAA
*
7000422 GAAAAAAGGAA
1 GAAAAAA-AAA
*
7000433 GAAAAAATAA
1 GAAAAAAAAA
*
7000443 -AATAAAAAA
1 GAAAAAAAAA
* *
7000452 TAAAATAAAA
1 GAAAAAAAAA
* *
7000462 TAAAATAAAA
1 GAAAAAAAAA
* *
7000472 TAAAATAAAA
1 GAAAAAAAAA
*
7000482 TAAAAATAAAA
1 GAAAAA-AAAA
*
7000493 TAAAAAAA
1 GAAAAAAA
7000501 GAATAAGGAA
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
9 7 0.09
10 41 0.52
11 23 0.29
12 8 0.10
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:7000434 original size:23 final size:22
Alignment explanation
Indices: 7000400--7000500 Score: 71
Period size: 23 Copynumber: 4.4 Consensus size: 22
7000390 TACTTCGCCT
7000400 GAAAAAAAAAGAAAGAAA-AAAA
1 GAAAAAAAAAGAAA-AAATAAAA
*
7000422 GAAAAAAGGAAGAAAAAATAAAA
1 GAAAAAA-AAAGAAAAAATAAAA
* *
7000445 TAAAAAATAAA-ATAAAATAAAA
1 GAAAAAA-AAAGAAAAAATAAAA
* *
7000467 TAAAATAAAATAAAATAAAAATAAAA
1 -GAAA-AAAA-AAGA-AAAAATAAAA
*
7000493 TAAAAAAA
1 GAAAAAAA
7000501 GAATAAGGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
22 20 0.31
23 22 0.34
24 9 0.14
25 4 0.06
26 9 0.14
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (22 bp):
GAAAAAAAAAGAAAAAATAAAA
Found at i:7000444 original size:5 final size:5
Alignment explanation
Indices: 7000436--7000497 Score: 97
Period size: 5 Copynumber: 11.8 Consensus size: 5
7000426 AAAGGAAGAA
7000436 AAAAT AAAAT AAAAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAAT
1 AAAAT AAAAT --AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT
7000489 AAAAT AAAA
1 AAAAT AAAA
7000498 AAAGAATAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
5 44 0.81
6 5 0.09
7 5 0.09
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7000477 original size:37 final size:37
Alignment explanation
Indices: 7000436--7000506 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
7000426 AAAGGAAGAA
*
7000436 AAAATAAAATAAAAAATAAAATAAAATAA-AATAAAAT
1 AAAATAAAAT-AAAAATAAAATAAAAAAAGAATAAAAT
7000473 AAAATAAAATAAAAATAAAATAAAAAAAGAATAA
1 AAAATAAAATAAAAATAAAATAAAAAAAGAATAA
7000507 GGAAGATTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 17 0.53
37 15 0.47
ACGTcount: A:0.82, C:0.00, G:0.01, T:0.17
Consensus pattern (37 bp):
AAAATAAAATAAAAATAAAATAAAAAAAGAATAAAAT
Found at i:7001393 original size:81 final size:81
Alignment explanation
Indices: 7001289--7001481 Score: 264
Period size: 81 Copynumber: 2.4 Consensus size: 81
7001279 GGGAAAGGGG
* * * **
7001289 CATATATCTCAG-TGCATAGCAAAAATGCAATAATGCGACCAATCAAGAATAAGATTATCGTTTT
1 CATATATCCCAGCT-CATAACAAAAATGCAAGAATGCGACCAATCAAGAATAAGACGATCGTTTT
*
7001353 ATTTGAAGAGAGGGGCA
65 ATTTGAAGAGAGAGGCA
* * *
7001370 CATATATCCCAGCTCATAACAAAAATGCAAGAATGCGATCAGTCAAGAATAAGACGATCGTTTTG
1 CATATATCCCAGCTCATAACAAAAATGCAAGAATGCGACCAATCAAGAATAAGACGATCGTTTTA
*
7001435 TTTGAAGAGAGAGGTA
66 TTTGAAGAGAGAGGCA
*
7001451 CACATATCCCAGCTCATAAC-AAAATGCAAGA
1 CATATATCCCAGCTCATAACAAAAATGCAAGA
7001482 CATTATGTTA
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
80 11 0.11
81 88 0.88
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (81 bp):
CATATATCCCAGCTCATAACAAAAATGCAAGAATGCGACCAATCAAGAATAAGACGATCGTTTTA
TTTGAAGAGAGAGGCA
Found at i:7003352 original size:42 final size:42
Alignment explanation
Indices: 7003091--7003360 Score: 441
Period size: 42 Copynumber: 6.4 Consensus size: 42
7003081 TTATTCGAGC
7003091 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
*
7003133 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
*
7003175 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATACTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
*
7003217 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
* ** *
7003259 CATCAGTAAGTCTTCCGAGCATGATGCTTAAATAATTCGGTT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
*
7003301 CATCAGTAAGCCTTTCGAGCATGATGCTTAAATCCTTCGGGT
1 CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
** *
7003343 CATTTGTAAGCCTTTCGA
1 CATCAGTAAGTCTTTCGA
7003361 CCAAGATGAT
Statistics
Matches: 213, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 213 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGT
Found at i:7003685 original size:21 final size:21
Alignment explanation
Indices: 7003659--7003704 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7003649 ACAAGTCTCT
*
7003659 CTTCTCCAGATCTGATATTCC
1 CTTCTCCAGATATGATATTCC
7003680 CTTCTCCAGATATGATATTCC
1 CTTCTCCAGATATGATATTCC
7003701 CTTC
1 CTTC
7003705 AGAGTAAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.33, G:0.09, T:0.39
Consensus pattern (21 bp):
CTTCTCCAGATATGATATTCC
Found at i:7003750 original size:48 final size:48
Alignment explanation
Indices: 7003687--7004083 Score: 492
Period size: 48 Copynumber: 8.3 Consensus size: 48
7003677 TCCCTTCTCC
* *
7003687 AGATATGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
* * *
7003735 AGATTTGATATTCCCTTCAAAGTAAGTGGAACAAGTCTCTTTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
*
7003783 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTC-C
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
* ** *
7003830 AGATCTGATATTCCCTTCAGAGTAAGTAGAACATGTCTCTCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
*
7003878 AGATCTT-ATATTCCCTTTAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
1 AGAT-TTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
* * * * * *
7003926 AGATCTAATATTCCCTTTAGAATAAGCGGAACATGTCTATCTTCTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
* * * * * *
7003974 AGATTTGATATTCCTTTCAAAGTAAACAGAACAAGTCTCTTTTTTCAA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
* * * * * * *
7004022 TGATTTGATATTCCCTTAAGAGTAAGAGGAATATGTCTCTCTTTTCCA
1 AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
*
7004070 AGGTTTGATATTCC
1 AGATTTGATATTCC
7004084 TTGAGTGACA
Statistics
Matches: 300, Mismatches: 46, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
47 43 0.14
48 256 0.85
49 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (48 bp):
AGATTTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTCTCAA
Found at i:7003780 original size:116 final size:118
Alignment explanation
Indices: 7003564--7003800 Score: 370
Period size: 116 Copynumber: 2.0 Consensus size: 118
7003554 AATGGATCAA
* *
7003564 TTCTCCCAAATATGATATTCCCTTCAGAGTAAGCGAAACATGTCTCTCTTCTCAAATATTTGATA
1 TTCTCCCAAATATGATATTCCCTTCAGAGTAAGCGAAACAAGTCTCTCTTCTCAAAGATTTGATA
* * *
7003629 TTCCTTTCAGAGTAAGTGGAACAAGTCTCTCTTCTC-CAGATCTGATATTCCC
66 TTCCCTTCAAAGTAAGTGGAACAAGTCTCTCTTCTCAAAGATCTGATATTCCC
* * *
7003681 TTCT-CCAGATATGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCAAAGATTTGATA
1 TTCTCCCAAATATGATATTCCCTTCAGAGTAAGCGAAACAAGTCTCTCTTCTCAAAGATTTGATA
* *
7003745 TTCCCTTCAAAGTAAGTGGAACAAGTCTCTTTTCTCAAAGATTTGATATTCCC
66 TTCCCTTCAAAGTAAGTGGAACAAGTCTCTCTTCTCAAAGATCTGATATTCCC
7003798 TTC
1 TTC
7003801 AGAGTAAGCG
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
116 88 0.81
117 21 0.19
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (118 bp):
TTCTCCCAAATATGATATTCCCTTCAGAGTAAGCGAAACAAGTCTCTCTTCTCAAAGATTTGATA
TTCCCTTCAAAGTAAGTGGAACAAGTCTCTCTTCTCAAAGATCTGATATTCCC
Found at i:7003938 original size:143 final size:143
Alignment explanation
Indices: 7003680--7004064 Score: 513
Period size: 143 Copynumber: 2.7 Consensus size: 143
7003670 CTGATATTCC
*
7003680 CTTCTCCAGATATGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTCTCAAAGATTTGATA
1 CTTCTCCAGATATGATATTCCCTTCAGAGTAAGTAGAACAAGTCTCTCTTCTCAAAGATTTGATA
* * * * *
7003745 TTCCCTTCAA-AGTAAGTGGAACAAGTCTCTTTTCTCAAAGATTTGATATTCCCTTCAGAGTAAG
66 TTCCCTT-AAGAGTAAGAGGAACAAGTCTCTCTTCTCAAAGATCTAATATTCCCTTCAGAATAAG
*
7003809 CGGAACAAGTCTCT
130 CGGAACAAGTCTAT
* *
7003823 CTTCTCCAGATCTGATATTCCCTTCAGAGTAAGTAGAACATGTCTCTCTTCTCAAAGATCTT-AT
1 CTTCTCCAGATATGATATTCCCTTCAGAGTAAGTAGAACAAGTCTCTCTTCTCAAAGAT-TTGAT
* * *
7003887 ATTCCCTTTAGAGTAAGCGGAACAAGTCTCTCTTCTCAAAGATCTAATATTCCCTTTAGAATAAG
65 ATTCCCTTAAGAGTAAGAGGAACAAGTCTCTCTTCTCAAAGATCTAATATTCCCTTCAGAATAAG
*
7003952 CGGAACATGTCTAT
130 CGGAACAAGTCTAT
* * * * ** * * *
7003966 CTTCTCAAAGATTTGATATTCCTTTCAAAGTAAACAGAACAAGTCTCTTTTTTCAATGATTTGAT
1 CTTCTC-CAGATATGATATTCCCTTCAGAGTAAGTAGAACAAGTCTCTCTTCTCAAAGATTTGAT
* *
7004031 ATTCCCTTAAGAGTAAGAGGAATATGTCTCTCTT
65 ATTCCCTTAAGAGTAAGAGGAACAAGTCTCTCTT
7004065 TTCCAAGGTT
Statistics
Matches: 212, Mismatches: 26, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
142 1 0.00
143 134 0.63
144 77 0.36
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (143 bp):
CTTCTCCAGATATGATATTCCCTTCAGAGTAAGTAGAACAAGTCTCTCTTCTCAAAGATTTGATA
TTCCCTTAAGAGTAAGAGGAACAAGTCTCTCTTCTCAAAGATCTAATATTCCCTTCAGAATAAGC
GGAACAAGTCTAT
Found at i:7017002 original size:64 final size:64
Alignment explanation
Indices: 7016889--7017012 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 64
7016879 GTGCACCAAG
** *
7016889 TGTGCATCGATGCATAAAATGCATTCGATGTTTAAAAATAGCCTGAGTGCATCGGTGCATTGCT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTAAAAATAGCCCAAGTGCATCGATGCATTGCT
*
7016953 TGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAAA-A-CCCAAGTGCATCGATGCAT
1 TGTGCATCGATGCATAAAATGCATTCGATG-TTTAA-AAATAGCCCAAGTGCATCGATGCAT
7017013 GAAATGCGTT
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
64 45 0.83
65 6 0.11
66 3 0.06
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (64 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTAAAAATAGCCCAAGTGCATCGATGCATTGCT
Found at i:7017450 original size:19 final size:20
Alignment explanation
Indices: 7017412--7017451 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7017402 TTTGAAATTA
*
7017412 CTCCCCCTTACTATAACATTT
1 CTCCCCCTTA-TAAAACATTT
7017433 CTCCCCCTT-TAAAACATTT
1 CTCCCCCTTATAAAACATTT
7017452 TACACTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
21 9 0.50
ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38
Consensus pattern (20 bp):
CTCCCCCTTATAAAACATTT
Found at i:7017468 original size:63 final size:63
Alignment explanation
Indices: 7017400--7017524 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
7017390 TTGAAAATCA
7017400 AGTTTGAAATTACTCCCCCTTACTATAACATTTCTCCCCCTTTAAAACATTTTACACTTCTCG
1 AGTTTGAAATTACTCCCCCTTACTATAACATTTCTCCCCCTTTAAAACATTTTACACTTCTCG
* *
7017463 AGTTTGAAATTACTCCCCCTTACTATAACATTTCTCTCCCTTTAAAACATTTTGCACTTCTC
1 AGTTTGAAATTACTCCCCCTTACTATAACATTTCTCCCCCTTTAAAACATTTTACACTTCTC
7017525 CCCCTTTTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.26, C:0.30, G:0.05, T:0.39
Consensus pattern (63 bp):
AGTTTGAAATTACTCCCCCTTACTATAACATTTCTCCCCCTTTAAAACATTTTACACTTCTCG
Found at i:7019065 original size:21 final size:21
Alignment explanation
Indices: 7019040--7019097 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 21
7019030 CTAATAGGCT
*
7019040 ATTAGGAGGTTGAG-GAATGGG
1 ATTAGGAGGTTG-GTGAACGGG
7019061 ATTAGGAGGTTGGTTTGAACGGG
1 ATTAGGAGGTTGG--TGAACGGG
7019084 ATTAGGAGGTTGGT
1 ATTAGGAGGTTGGT
7019098 TTGAACGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 1 0.03
21 13 0.39
23 19 0.58
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (21 bp):
ATTAGGAGGTTGGTGAACGGG
Found at i:7019088 original size:23 final size:23
Alignment explanation
Indices: 7019058--7019104 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7019048 GTTGAGGAAT
7019058 GGGATTAGGAGGTTGGTTTGAAC
1 GGGATTAGGAGGTTGGTTTGAAC
7019081 GGGATTAGGAGGTTGGTTTGAAC
1 GGGATTAGGAGGTTGGTTTGAAC
7019104 G
1 G
7019105 AGAATGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.04, G:0.45, T:0.30
Consensus pattern (23 bp):
GGGATTAGGAGGTTGGTTTGAAC
Found at i:7024151 original size:3 final size:3
Alignment explanation
Indices: 7024143--7024167 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7024133 TGCCATTTCC
7024143 TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA T
7024168 TCGAATCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:7025837 original size:64 final size:64
Alignment explanation
Indices: 7025695--7025873 Score: 182
Period size: 64 Copynumber: 2.8 Consensus size: 64
7025685 TGGAACACTT
* * * * * **
7025695 AGTGCATCGGTGCACCA-AGTGTGCATCTATGCATAAAATGCATTCGATGTTTGAAAATAGCCTG
1 AGTGCATCGATGCA-TAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAACCCA
* * * ** * *
7025759 AGTGTATCGGTGCATTGCTTGTGCATCGATGCATGAAATACATTCGATGTTTTAATAA-AACCCA
1 AGTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAA-AATAACCCA
* *
7025823 AGTGCATCGATGCATAGAGAGTGCATCGATGCATGAAATGCATTCAATGTT
1 AGTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTT
7025874 CAATTTATTC
Statistics
Matches: 93, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
64 91 0.98
65 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (64 bp):
AGTGCATCGATGCATAGAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAATAACCCA
Found at i:7027776 original size:12 final size:12
Alignment explanation
Indices: 7027746--7027780 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7027736 ATATTTTAAT
7027746 TTATCTTGTTT-
1 TTATCTTGTTTC
*
7027757 TAATCTTGTTTC
1 TTATCTTGTTTC
7027769 TTATCTTGTTTC
1 TTATCTTGTTTC
7027781 CAGCACCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.11, C:0.14, G:0.09, T:0.66
Consensus pattern (12 bp):
TTATCTTGTTTC
Found at i:7032423 original size:12 final size:12
Alignment explanation
Indices: 7032393--7032427 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7032383 TATATTTTAT
7032393 TTATCTTGTTT-
1 TTATCTTGTTTC
*
7032404 TAATCTTGTTTC
1 TTATCTTGTTTC
7032416 TTATCTTGTTTC
1 TTATCTTGTTTC
7032428 CAGCACCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.11, C:0.14, G:0.09, T:0.66
Consensus pattern (12 bp):
TTATCTTGTTTC
Found at i:7035408 original size:22 final size:22
Alignment explanation
Indices: 7035365--7035408 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7035355 GTAAAAACTT
* *
7035365 ATCCACCATATGCAACAGTGTC
1 ATCCACCACATGCAACAATGTC
*
7035387 ATCCACCACATGCACCAATGTC
1 ATCCACCACATGCAACAATGTC
7035409 CTAAATGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.11, T:0.20
Consensus pattern (22 bp):
ATCCACCACATGCAACAATGTC
Found at i:7037194 original size:209 final size:208
Alignment explanation
Indices: 7036834--7037243 Score: 802
Period size: 209 Copynumber: 2.0 Consensus size: 208
7036824 TTCAATTTTC
7036834 TACAAAGGTTAAATGATTTCGAATTGATAATGTCAAAGAATTTGACTTGGTTGATTTTTTCAGAA
1 TACAAAGGTTAAATGATTTCGAATTGATAATGTCAAAGAATTTGACTTGGTTGATTTTTTCAGAA
7036899 CAAAAGGTATTGTCCATCAAAATTCTTGCACACACACCACAACAAAATAGTGTCGTTGAAAGAAA
66 CAAAAGGTATTGTCCATCAAAATTCTTGCACACACACCACAACAAAATAGTGTCGTTGAAAGAAA
7036964 ACATCAATACATTTTTGCTATGGCAAGAGCTTTAAGAATTCAAGCTAATCTTCCTCTTCCTTTTT
131 ACATCAATACATTTTTGCTATGGCAAGAGCTTTAAGAATTCAAGCTAATCTTCCTCTTCC-TTTT
7037029 TGGATAGCTAATCT
195 TGGATAGCTAATCT
*
7037043 TACAAAGGTTAAATGATTTCGAATTGATAATGTCAAAGAATTTGACTTGGTTGATTTTTTCAGGA
1 TACAAAGGTTAAATGATTTCGAATTGATAATGTCAAAGAATTTGACTTGGTTGATTTTTTCAGAA
7037108 CAAAAGGTATTGTCCATCAAAATTCTTGCACACACACCACAACAAAATAGTGTCGTTGAAAGAAA
66 CAAAAGGTATTGTCCATCAAAATTCTTGCACACACACCACAACAAAATAGTGTCGTTGAAAGAAA
7037173 ACATCAATACATTTTTGCTATGGCAAGAGCTTTAAGAATTCAAGCTAATCTTCCTCTTCCTTTTT
131 ACATCAATACATTTTTGCTATGGCAAGAGCTTTAAGAATTCAAGCTAATCTTCCTCTTCCTTTTT
7037238 GGATAG
196 GGATAG
7037244 ATTGTGTTCT
Statistics
Matches: 200, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
208 11 0.05
209 189 0.94
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (208 bp):
TACAAAGGTTAAATGATTTCGAATTGATAATGTCAAAGAATTTGACTTGGTTGATTTTTTCAGAA
CAAAAGGTATTGTCCATCAAAATTCTTGCACACACACCACAACAAAATAGTGTCGTTGAAAGAAA
ACATCAATACATTTTTGCTATGGCAAGAGCTTTAAGAATTCAAGCTAATCTTCCTCTTCCTTTTT
GGATAGCTAATCT
Found at i:7039355 original size:62 final size:62
Alignment explanation
Indices: 7039258--7039381 Score: 230
Period size: 62 Copynumber: 2.0 Consensus size: 62
7039248 TATTCGCGTT
*
7039258 GCAGAAAATCTAATTCGCTATGAGTGTACCAATTATATAGAGATATTCAATAAAAACTACAG
1 GCAGAAAATCTAATTCACTATGAGTGTACCAATTATATAGAGATATTCAATAAAAACTACAG
*
7039320 GCAGAAAATCTAATTCACTATGAGTGTACTAATTATATAGAGATATTCAATAAAAACTACAG
1 GCAGAAAATCTAATTCACTATGAGTGTACCAATTATATAGAGATATTCAATAAAAACTACAG
7039382 CAGGGTGTGA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (62 bp):
GCAGAAAATCTAATTCACTATGAGTGTACCAATTATATAGAGATATTCAATAAAAACTACAG
Found at i:7040450 original size:49 final size:50
Alignment explanation
Indices: 7040371--7040468 Score: 146
Period size: 49 Copynumber: 2.0 Consensus size: 50
7040361 AGTTGAACTT
7040371 GTAAGAAATAAAACTAAACATTGTTAGCAATGATAATAAAAGAAAATACAC
1 GTAAGAAATAAAAC-AAACATTGTTAGCAATGATAATAAAAGAAAATACAC
* *
7040422 GTAAGAAA-AAAA-AAACATTTGTTAGCAATTATAATTAAAGAAAATAC
1 GTAAGAAATAAAACAAACA-TTGTTAGCAATGATAATAAAAGAAAATAC
7040469 GAGAAGATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
48 5 0.11
49 27 0.61
50 4 0.09
51 8 0.18
ACGTcount: A:0.57, C:0.08, G:0.11, T:0.23
Consensus pattern (50 bp):
GTAAGAAATAAAACAAACATTGTTAGCAATGATAATAAAAGAAAATACAC
Found at i:7041444 original size:40 final size:41
Alignment explanation
Indices: 7041399--7041479 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
7041389 ATAACAATCC
*
7041399 GAATAAATTTG-TTATAAAACAACAGATTTTACCACGACAT
1 GAATAAAATTGCTTATAAAACAACAGATTTTACCACGACAT
* *
7041439 GAATAAAATTGCTTATAAAACAATATATTTTACCACGACAT
1 GAATAAAATTGCTTATAAAACAACAGATTTTACCACGACAT
7041480 ACTAATTGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
40 10 0.27
41 27 0.73
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (41 bp):
GAATAAAATTGCTTATAAAACAACAGATTTTACCACGACAT
Found at i:7041888 original size:16 final size:16
Alignment explanation
Indices: 7041867--7041898 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7041857 ATACTTTCAA
*
7041867 CCATTTGATAATGAAT
1 CCATTTGACAATGAAT
7041883 CCATTTGACAATGAAT
1 CCATTTGACAATGAAT
7041899 GTTTAATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (16 bp):
CCATTTGACAATGAAT
Found at i:7041976 original size:3 final size:3
Alignment explanation
Indices: 7041962--7042662 Score: 156
Period size: 3 Copynumber: 233.7 Consensus size: 3
7041952 TGAATATTTA
* * * * *
7041962 TTG TTA TTG TTG TTG TTG TTG TTA TTG ATG ATG ATG TTG TTG TTAG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT-G
* * * * * *
7042008 -TG TTG TTG TTG TTT TTG TTT TTG TT- TATA TTA TTA TTG TTG TTT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG T-TG TTG TTG TTG TTG TTG
*** * * * * * *
7042052 TTG CCA TTG TTG TTG TTA TTA TTA TTA TTA TTG TTG TTG TTG TTG TTA
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * * * * *
7042100 TTG TTA TTG TTA TTG ATG TTA CTG TTA CTA TTG CTA TTG TT- TCTA
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T-TG
* * * * ** * *
7042145 TTA TTG TTA TTG CTA TTG TCA TTG TTG TTG TTG TTG TTG ATA TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * * * * *
7042193 TTT TTA CTA TTG TCG TTG TTA TTA TTA ATG TTG TTA TTG TT- TCTA
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T-TG
* * * * * * * * * *
7042238 CTG TTG TTG TTG TTC TTT TTC TTC TTG TTA TTA TTG TCG TAG TTG CTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * *
7042286 TTT TTA TTG TTA TTG TTG TTG TTG ATG ATG TTG TTG TTG CTA TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * * * *
7042334 TTG CTA TTG TTG TTG TTA CTG CTG TCG TTA TTT TTG ATG TTG TTG TTC
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * ** *
7042382 TTG TTG TTG TTG TTG TTG TTG CTA TTA TTG TTA TAA TTG TTG TTA TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * *
7042430 TTG CTG CTA TTG TTG TTA TTG ATG TTG TTG TTG TTG CTA TTG TTG TT-
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * *
7042477 TT- TATG AGTA TTT TTA TTG TT- ATG ATTG TTG CTG TTG TTG TTA TCG
1 TTG T-TG -TTG TTG TTG TTG TTG TTG -TTG TTG TTG TTG TTG TTG TTG
*** * * * * * * *
7042523 ACA TTG TTG TTG CTA TTG TTG TTG TTA TTA TTA TCG TTG TTG TTG TTA
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * * *
7042571 TTA CTA TTG TTG TTT TTG TTG TTA ATG TTG TTA TTG TTA TTG TTG GTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * *
7042619 GTG ATG ATG TTG TTA TTA TTG TTG TTG GTG CTA TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
7042663 ACTAAGGATG
Statistics
Matches: 502, Mismatches: 183, Indels: 26
0.71 0.26 0.04
Matches are distributed among these distances:
2 8 0.02
3 488 0.97
4 6 0.01
ACGTcount: A:0.12, C:0.05, G:0.22, T:0.61
Consensus pattern (3 bp):
TTG
Found at i:7042107 original size:30 final size:30
Alignment explanation
Indices: 7041959--7042614 Score: 207
Period size: 30 Copynumber: 22.1 Consensus size: 30
7041949 CAATGAATAT
* *
7041959 TTATTGTTATTGTTGTTGTTGTTGTTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * *
7041989 --A-TGATGATGTTGTTGTTAGTGTTGTTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * *
7042016 TTGTTTTTGTTTTTGTT-TATATTATTATTG
1 TTATTGTTGTTGTTGTTGT-TATTGTTATTG
* * * *
7042046 TTGTTTTTGCCATTGTTGTTGTTATTATTATTA
1 TTATTGTTG---TTGTTGTTGTTATTGTTATTG
7042079 TTATTGTTGTTGTTGTTGTTATTGTTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* ** ** *
7042109 TTATTGATGTTACTGTTACTATTGCTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * *
7042139 TT-TCTATTATTGTTATTGCTATTGTCATTG
1 TTAT-TGTTGTTGTTGTTGTTATTGTTATTG
* * * * * *
7042169 TTGTTGTTGTTGTTGATATTGTTGTTTTTA
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * *
7042199 CTATTGTCGTTGTTATTATTAATGTTGTTATTG
1 TTATTGTTGTTGTTGTTGTT-A--TTGTTATTG
* * * * *
7042232 TTTCTACTGTTGTTGTTGTTCTTTTTCTTCTTG
1 --T-TATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * * *
7042265 TTATTATTGTCGTAGTTGCTGTTTTTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * *
7042295 TTATTGTTGTTGTTGATGATGTTGTTGTTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * *
7042325 CTATTGTTGTTGCTATTGTTGTTGTTACTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * * * * *
7042355 CTGTCGTTATTTTTGATGTTGTTGTTCTTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* *
7042385 TTGTTGTTGTTGTTGTTGCTA---TTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
** * ** *
7042412 TTATAATTGTTGTTATTGTTGCTGCTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * *
7042442 TTGTTATTGATGTTGTTGTTGTTGCTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * *
7042472 TTGTT-TT-TATGAGTATTTTTATTGTTA-TG
1 TTATTGTTGT-TG-TTGTTGTTATTGTTATTG
* *
7042501 --ATTGTTGCTGTTGTTGTTATCG--A---
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * *
7042524 -CATTGTTGTTGCTATTGTTGTTGTTATTA
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* * * * *
7042553 TTATCGTTGTTGTTGTTATTACTATTGTTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
* **
7042583 TTTTTGTTGTTAATGTTGTTATTGTTATTG
1 TTATTGTTGTTGTTGTTGTTATTGTTATTG
7042613 TT
1 TT
7042615 GGTGGTGATG
Statistics
Matches: 448, Mismatches: 148, Indels: 60
0.68 0.23 0.09
Matches are distributed among these distances:
24 17 0.04
25 1 0.00
26 1 0.00
27 50 0.11
28 5 0.01
29 8 0.02
30 310 0.69
31 2 0.00
33 38 0.08
34 1 0.00
36 15 0.03
ACGTcount: A:0.12, C:0.05, G:0.21, T:0.61
Consensus pattern (30 bp):
TTATTGTTGTTGTTGTTGTTATTGTTATTG
Found at i:7043155 original size:21 final size:21
Alignment explanation
Indices: 7043144--7043243 Score: 92
Period size: 21 Copynumber: 4.8 Consensus size: 21
7043134 TTATTGTTGA
* * *
7043144 TGTTGTTGTTGTGGATATTAC
1 TGTTGTTGTTGTTGTTATTGC
* *
7043165 TGTTGTTATTGTTGTTATTAC
1 TGTTGTTGTTGTTGTTATTGC
*
7043186 TGTTGTTGTTGTTGTTATTGT
1 TGTTGTTGTTGTTGTTATTGC
** * * *
7043207 TGTTACTGCTGTTATTATTGA
1 TGTTGTTGTTGTTGTTATTGC
*
7043228 TGTTGTTATTGTTGTT
1 TGTTGTTGTTGTTGTT
7043244 GCTGGTGATG
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.12, C:0.04, G:0.24, T:0.60
Consensus pattern (21 bp):
TGTTGTTGTTGTTGTTATTGC
Found at i:7043180 original size:12 final size:12
Alignment explanation
Indices: 7043131--7043244 Score: 84
Period size: 12 Copynumber: 9.2 Consensus size: 12
7043121 GTTACTACTT
7043131 TTGTTATTGTTG
1 TTGTTATTGTTG
* *
7043143 ATGTTGTTGTTG
1 TTGTTATTGTTG
* * **
7043155 TGGATATTACTG
1 TTGTTATTGTTG
7043167 TTGTTATTGTTG
1 TTGTTATTGTTG
*
7043179 TTATTACTGTTGTTG
1 TTGTTA---TTGTTG
* *
7043194 TTGTTGTTATTG
1 TTGTTATTGTTG
* *
7043206 TTGTTACTGCTG
1 TTGTTATTGTTG
* *
7043218 TTATTATTGATG
1 TTGTTATTGTTG
7043230 TTGTTATTGTTG
1 TTGTTATTGTTG
7043242 TTG
1 TTG
7043245 CTGGTGATGT
Statistics
Matches: 74, Mismatches: 25, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
12 64 0.86
15 10 0.14
ACGTcount: A:0.12, C:0.04, G:0.25, T:0.60
Consensus pattern (12 bp):
TTGTTATTGTTG
Found at i:7043273 original size:3 final size:3
Alignment explanation
Indices: 7043131--7043260 Score: 62
Period size: 3 Copynumber: 43.3 Consensus size: 3
7043121 GTTACTACTT
* * * * * * * *
7043131 TTG TTA TTG TTG ATG TTG TTG TTG TGG ATA TTA CTG TTG TTA TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * * * * * *
7043179 TTA TTA CTG TTG TTG TTG TTG TTA TTG TTG TTA CTG CTG TTA TTA TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
* * * * *
7043227 ATG TTG TTA TTG TTG TTG CTG GTG ATG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
7043261 AGCTGATGTT
Statistics
Matches: 93, Mismatches: 34, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
3 93 1.00
ACGTcount: A:0.12, C:0.04, G:0.26, T:0.58
Consensus pattern (3 bp):
TTG
Found at i:7043273 original size:18 final size:18
Alignment explanation
Indices: 7043231--7043273 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7043221 TTATTGATGT
* * *
7043231 TGTTATTGTTGTTGCTGG
1 TGTTGTTGTTGTAGCTGA
*
7043249 TGATGTTGTTGTAGCTGA
1 TGTTGTTGTTGTAGCTGA
7043267 TGTTGTT
1 TGTTGTT
7043274 ACCATTGTTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.09, C:0.05, G:0.33, T:0.53
Consensus pattern (18 bp):
TGTTGTTGTTGTAGCTGA
Found at i:7043925 original size:20 final size:20
Alignment explanation
Indices: 7043902--7043961 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
7043892 CACAGTTTCC
7043902 GAATTCGCAACTCGAATTTG
1 GAATTCGCAACTCGAATTTG
* * * *
7043922 GAATTCGCAGCACAGAA-GTC
1 GAATTCGCAACTC-GAATTTG
7043942 GAATTCGCAACTCGAATTTG
1 GAATTCGCAACTCGAATTTG
7043962 ACAATTTTGC
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
19 3 0.10
20 24 0.80
21 3 0.10
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (20 bp):
GAATTCGCAACTCGAATTTG
Found at i:7044029 original size:40 final size:40
Alignment explanation
Indices: 7043945--7044074 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
7043935 AGAAGTCGAA
* * * * *
7043945 TTCGCAACTCGAATTTGACAATTTTGCAACACGAATTTCTTT
1 TTCGCAACTCGATTTTTA-AA-TTCGCAACACGAGTTTCATT
*
7043987 TTCGCAACTCGATTTTTAAATTCGCAACACGAGTTTCGTT
1 TTCGCAACTCGATTTTTAAATTCGCAACACGAGTTTCATT
**
7044027 TTCGCAACAAGATTTTCT-AATTCGCAA-AGCGAGTTTCATT
1 TTCGCAACTCGATTTT-TAAATTCGCAACA-CGAGTTTCATT
7044067 TTCGCAAC
1 TTCGCAAC
7044075 ACGAATTTCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 58 0.74
41 3 0.04
42 16 0.21
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (40 bp):
TTCGCAACTCGATTTTTAAATTCGCAACACGAGTTTCATT
Found at i:7044030 original size:20 final size:20
Alignment explanation
Indices: 7043945--7044094 Score: 99
Period size: 20 Copynumber: 7.4 Consensus size: 20
7043935 AGAAGTCGAA
*
7043945 TTCGCAACTCGAATTTGACAATT
1 TTCGCAACACGAATTT--C-ATT
*
7043968 TT-GCAACACGAATTTCTTT
1 TTCGCAACACGAATTTCATT
* * * **
7043987 TTCGCAACTCGATTTTTAAA
1 TTCGCAACACGAATTTCATT
* *
7044007 TTCGCAACACGAGTTTCGTT
1 TTCGCAACACGAATTTCATT
* * *
7044027 TTCGCAACAAGATTTTC-TAA
1 TTCGCAACACGAATTTCAT-T
*
7044047 TTCGCAA-AGCGAGTTTCATT
1 TTCGCAACA-CGAATTTCATT
*
7044067 TTCGCAACACGAATTTCGTT
1 TTCGCAACACGAATTTCATT
*
7044087 TTTGCAAC
1 TTCGCAAC
7044095 TTGATTTTTA
Statistics
Matches: 99, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
19 6 0.06
20 77 0.78
21 2 0.02
22 12 0.12
23 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (20 bp):
TTCGCAACACGAATTTCATT
Found at i:7044051 original size:60 final size:60
Alignment explanation
Indices: 7043987--7044134 Score: 156
Period size: 60 Copynumber: 2.5 Consensus size: 60
7043977 GAATTTCTTT
* * * *
7043987 TTCGCAACTCGATTTTTAAATTCGCAACACGAGTTTCGTTTTCGCAACAAGATTTTCT-AA
1 TTCGCAACGCGAGTTTCAAATTCGCAACACGAATTTCGTTTTCGCAACAAGATTTT-TAAA
* ** * **
7044047 TTCGCAAAGCGAGTTTCATTTTCGCAACACGAATTTCGTTTTTGCAACTTGATTTTTAAA
1 TTCGCAACGCGAGTTTCAAATTCGCAACACGAATTTCGTTTTCGCAACAAGATTTTTAAA
* *
7044107 TTCGCAACGCAAATTT-AAATTTCGCAAC
1 TTCGCAACGCGAGTTTCAAA-TTCGCAAC
7044135 TCAGCTTTTA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
59 2 0.03
60 69 0.97
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (60 bp):
TTCGCAACGCGAGTTTCAAATTCGCAACACGAATTTCGTTTTCGCAACAAGATTTTTAAA
Found at i:7044130 original size:20 final size:20
Alignment explanation
Indices: 7044101--7044154 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
7044091 CAACTTGATT
7044101 TTTAAA-TTCGCAACGCAAA
1 TTTAAATTTCGCAACGCAAA
* **
7044120 TTTAAATTTCGCAACTCAGC
1 TTTAAATTTCGCAACGCAAA
*
7044140 TTTTAATTTCGCAAC
1 TTTAAATTTCGCAAC
7044155 ACATATATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 6 0.20
20 24 0.80
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.35
Consensus pattern (20 bp):
TTTAAATTTCGCAACGCAAA
Found at i:7044335 original size:16 final size:16
Alignment explanation
Indices: 7044314--7044344 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7044304 CTCTTGGAAA
7044314 TCGTAACCCCCACCAG
1 TCGTAACCCCCACCAG
*
7044330 TCGTAACCTCCACCA
1 TCGTAACCCCCACCA
7044345 ACCACCCTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.48, G:0.10, T:0.16
Consensus pattern (16 bp):
TCGTAACCCCCACCAG
Found at i:7047284 original size:42 final size:42
Alignment explanation
Indices: 7047216--7047339 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
7047206 CCCCACTTTT
* * * *
7047216 TCATCGAGTCGATTCTCCACTTCGACACCGAGATCCATCACC
1 TCATTGAGCCGATTCTACACCTCGACACCGAGATCCATCACC
* *
7047258 TCATTGAGCCGATTCTACACCTCGACACTGAGATCCATCACT
1 TCATTGAGCCGATTCTACACCTCGACACCGAGATCCATCACC
* *
7047300 TC--T-AGCCGACTCTATACCTCGACACCGAGATCCATCACC
1 TCATTGAGCCGATTCTACACCTCGACACCGAGATCCATCACC
7047339 T
1 T
7047340 ATTCCATCAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
39 33 0.46
40 1 0.01
42 38 0.53
ACGTcount: A:0.25, C:0.37, G:0.14, T:0.24
Consensus pattern (42 bp):
TCATTGAGCCGATTCTACACCTCGACACCGAGATCCATCACC
Found at i:7047319 original size:39 final size:41
Alignment explanation
Indices: 7047237--7047339 Score: 147
Period size: 39 Copynumber: 2.5 Consensus size: 41
7047227 ATTCTCCACT
*
7047237 TCGACACCGAGATCCATCACCTCATTGAGCCGATTCTACACC
1 TCGACACCGAGATCCATCACCTCA-TGAGCCGACTCTACACC
* * *
7047279 TCGACACTGAGATCCATCACTTC-T-AGCCGACTCTATACC
1 TCGACACCGAGATCCATCACCTCATGAGCCGACTCTACACC
7047318 TCGACACCGAGATCCATCACCT
1 TCGACACCGAGATCCATCACCT
7047340 ATTCCATCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.60
40 1 0.02
42 21 0.38
ACGTcount: A:0.26, C:0.38, G:0.14, T:0.22
Consensus pattern (41 bp):
TCGACACCGAGATCCATCACCTCATGAGCCGACTCTACACC
Found at i:7047463 original size:21 final size:21
Alignment explanation
Indices: 7047439--7047498 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
7047429 ACCTCCACGG
*
7047439 GATGAGTTAGGTGCTTTATAT
1 GATGAGGTAGGTGCTTTATAT
* *
7047460 GATGAGGTAAGTGCTTTATGT
1 GATGAGGTAGGTGCTTTATAT
*
7047481 GACGAGGTAGGTGCTTTA
1 GATGAGGTAGGTGCTTTA
7047499 CGTGATGACA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.23, C:0.07, G:0.33, T:0.37
Consensus pattern (21 bp):
GATGAGGTAGGTGCTTTATAT
Found at i:7047520 original size:42 final size:42
Alignment explanation
Indices: 7047474--7047587 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
7047464 AGGTAAGTGC
*
7047474 TTTATGTGACGAGGTAGGTGCTTTACGTGATGACAATGATAT
1 TTTATGTGACGAGGTAGGTGCTTTACGTGATGAAAATGATAT
* * * * *
7047516 TTTATGTTATGAGGTAGGTGCCTTACGTGATGAAAATGGTGT
1 TTTATGTGACGAGGTAGGTGCTTTACGTGATGAAAATGATAT
* * * *
7047558 ATTACGTGAGGAGGTAGGTGCTCTACGTGA
1 TTTATGTGACGAGGTAGGTGCTTTACGTGA
7047588 GATTGTTTCA
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.25, C:0.10, G:0.32, T:0.34
Consensus pattern (42 bp):
TTTATGTGACGAGGTAGGTGCTTTACGTGATGAAAATGATAT
Found at i:7047981 original size:21 final size:21
Alignment explanation
Indices: 7047924--7048065 Score: 123
Period size: 21 Copynumber: 6.8 Consensus size: 21
7047914 AAGCCTGATT
* *
7047924 CACCTACCATTGTTCA-GAGTC
1 CACCTCCCATCGTTCAGGA-TC
* *
7047945 CATCTCCCATTC-TTCAGGATT
1 CACCTCCCA-TCGTTCAGGATC
* * *
7047966 CACCTCTCATCGTTCAAGAGGC
1 CACCTCCCATCGTTCAGGA-TC
7047988 C-CCTCCCATCGTTCAGGATC
1 CACCTCCCATCGTTCAGGATC
7048008 CACCTCCCATCGTTCAGGATC
1 CACCTCCCATCGTTCAGGATC
**
7048029 CACC-CCGCATCGTTCAAAATC
1 CACCTCC-CATCGTTCAGGATC
7048050 CACC-CCGCATCGTTCA
1 CACCTCC-CATCGTTCA
7048066 AAATCCACAT
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.06
21 91 0.90
22 4 0.04
ACGTcount: A:0.21, C:0.40, G:0.13, T:0.25
Consensus pattern (21 bp):
CACCTCCCATCGTTCAGGATC
Found at i:7048072 original size:63 final size:63
Alignment explanation
Indices: 7047943--7048073 Score: 142
Period size: 63 Copynumber: 2.1 Consensus size: 63
7047933 TTGTTCAGAG
* * * * * **
7047943 TCCATCTCCCATTCTTCAGGATTCACCTCTCATCGTTCAAGAGGCCCCTCCCATCGTTCAGGA
1 TCCACCTCCCATTCTTCAGGATCCACCCCGCATCGTTCAAGAAGCCCCTCCCATCGTTCAAAA
*
7048006 TCCACCTCCCA-TCGTTCAGGATCCACCCCGCATCGTTCAA-AATCCACC-CCGCATCGTTCAAA
1 TCCACCTCCCATTC-TTCAGGATCCACCCCGCATCGTTCAAGAAGCC-CCTCC-CATCGTTCAAA
7048068 A
63 A
7048069 TCCAC
1 TCCAC
7048074 ATTCCATACT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
62 7 0.12
63 50 0.88
ACGTcount: A:0.22, C:0.41, G:0.12, T:0.24
Consensus pattern (63 bp):
TCCACCTCCCATTCTTCAGGATCCACCCCGCATCGTTCAAGAAGCCCCTCCCATCGTTCAAAA
Found at i:7049772 original size:2 final size:2
Alignment explanation
Indices: 7049765--7049819 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
7049755 TACAAATGTG
7049765 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7049807 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
7049820 GTAAATTTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7050019 original size:20 final size:20
Alignment explanation
Indices: 7049994--7050208 Score: 172
Period size: 20 Copynumber: 11.4 Consensus size: 20
7049984 AAATCGTAAC
*
7049994 TCAAATTTGCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
7050014 TCAAATTCGCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
* * * *
7050034 TCGAATTCACAATTCGAAAC
1 TCAAATTCGCAACTCGAAAA
*
7050054 TCAAATTCGCAACACG---A
1 TCAAATTCGCAACTCGAAAA
7050071 --AAA---GCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
7050086 TCAAATTCGCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
* ** *
7050106 TGAAATTCATAATTC-AAAA
1 TCAAATTCGCAACTCGAAAA
*
7050125 CTCAAATTCGCAACACG---A
1 -TCAAATTCGCAACTCGAAAA
7050143 --AAA-TCGCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
* *
7050160 TGAAATTCACAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
* *
7050180 TGAAAATCGCAACTCGAAAA
1 TCAAATTCGCAACTCGAAAA
*
7050200 TGAAATTCG
1 TCAAATTCG
7050209 AGTTGTGAAT
Statistics
Matches: 154, Mismatches: 25, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
12 7 0.05
14 9 0.06
15 7 0.05
17 4 0.03
18 1 0.01
19 7 0.05
20 119 0.77
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (20 bp):
TCAAATTCGCAACTCGAAAA
Found at i:7050060 original size:13 final size:13
Alignment explanation
Indices: 7050007--7050062 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
7049997 AATTTGCAAC
*
7050007 TCGAAAATCAAAT
1 TCGAAACTCAAAT
* *
7050020 TCGCAACTCGAAAA
1 TCGAAACTC-AAAT
*
7050034 TCG-AATTCACAAT
1 TCGAAACTCA-AAT
7050047 TCGAAACTCAAAT
1 TCGAAACTCAAAT
7050060 TCG
1 TCG
7050063 CAACACGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 1 0.03
13 22 0.65
14 11 0.32
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (13 bp):
TCGAAACTCAAAT
Found at i:7050096 original size:72 final size:73
Alignment explanation
Indices: 7050002--7050184 Score: 298
Period size: 72 Copynumber: 2.5 Consensus size: 73
7049992 ACTCAAATTT
*
7050002 GCAACTCGAAAATCAAATTCGCAACTCGAAAATCG-AATTCACAATTCGAAACTCAAATTCGCAA
1 GCAACTCGAAAATCAAATTCGCAACTCGAAAAT-GAAATTCACAATTCAAAACTCAAATTCGCAA
7050066 CACGAAAA-
65 CACGAAAAC
*
7050074 GCAACTCGAAAATCAAATTCGCAACTCGAAAATGAAATTCATAATTCAAAACTCAAATTCGCAAC
1 GCAACTCGAAAATCAAATTCGCAACTCGAAAATGAAATTCACAATTCAAAACTCAAATTCGCAAC
7050139 ACGAAAATC
66 ACGAAAA-C
* *
7050148 GCAACTCGAAAATGAAATTCACAACTCGAAAATGAAA
1 GCAACTCGAAAATCAAATTCGCAACTCGAAAATGAAA
7050185 ATCGCAACTC
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
71 1 0.01
72 68 0.65
74 35 0.34
ACGTcount: A:0.48, C:0.23, G:0.11, T:0.19
Consensus pattern (73 bp):
GCAACTCGAAAATCAAATTCGCAACTCGAAAATGAAATTCACAATTCAAAACTCAAATTCGCAAC
ACGAAAAC
Found at i:7050156 original size:54 final size:54
Alignment explanation
Indices: 7050092--7050200 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
7050082 AAAATCAAAT
* * *
7050092 TCGCAACTCGAAAATGAAATTCATAATTC-AAAACTCAAATTCGCAACACGAAAA
1 TCGCAACTCGAAAATGAAATTCACAACTCGAAAA-TCAAAATCGCAACACGAAAA
* *
7050146 TCGCAACTCGAAAATGAAATTCACAACTCGAAAATGAAAATCGCAACTCGAAAA
1 TCGCAACTCGAAAATGAAATTCACAACTCGAAAATCAAAATCGCAACACGAAAA
7050200 T
1 T
7050201 GAAATTCGAG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 45 0.92
55 4 0.08
ACGTcount: A:0.48, C:0.22, G:0.11, T:0.19
Consensus pattern (54 bp):
TCGCAACTCGAAAATGAAATTCACAACTCGAAAATCAAAATCGCAACACGAAAA
Found at i:7050200 original size:14 final size:14
Alignment explanation
Indices: 7050123--7050200 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 14
7050113 CATAATTCAA
*
7050123 AACTC-AAATTCGC
1 AACTCGAAAATCGC
*
7050136 AACACGAAAATCGC
1 AACTCGAAAATCGC
*
7050150 AACTCGAAAAT-GA
1 AACTCGAAAATCGC
* * *
7050163 AATTC-ACAACTCGA
1 AACTCGA-AAATCGC
*
7050177 AAAT-GAAAATCGC
1 AACTCGAAAATCGC
7050190 AACTCGAAAAT
1 AACTCGAAAAT
7050201 GAAATTCGAG
Statistics
Matches: 50, Mismatches: 10, Indels: 9
0.72 0.14 0.13
Matches are distributed among these distances:
12 1 0.02
13 20 0.40
14 29 0.58
ACGTcount: A:0.49, C:0.23, G:0.12, T:0.17
Consensus pattern (14 bp):
AACTCGAAAATCGC
Found at i:7050294 original size:20 final size:20
Alignment explanation
Indices: 7050205--7050299 Score: 91
Period size: 20 Copynumber: 4.8 Consensus size: 20
7050195 GAAAATGAAA
* **
7050205 TTCGAGTTGTGAATTCGAAA
1 TTCGAGTTGCGAATTCGATT
* * *
7050225 TTCGAGTTGAGAAATCAATT
1 TTCGAGTTGCGAATTCGATT
* * *
7050245 TTCGAGTAGCGAATTTGAGT
1 TTCGAGTTGCGAATTCGATT
*
7050265 TTCGAATTGCGAATTCGATT
1 TTCGAGTTGCGAATTCGATT
*
7050285 TTCGAGTTGCAAATT
1 TTCGAGTTGCGAATT
7050300 TACAAAAACG
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (20 bp):
TTCGAGTTGCGAATTCGATT
Found at i:7051179 original size:18 final size:18
Alignment explanation
Indices: 7051158--7051197 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7051148 AGGTGAAGGC
*
7051158 GATTGTAATTGTGATTTT
1 GATTGTAATTGCGATTTT
* *
7051176 GATTTTGATTGCGATTTT
1 GATTGTAATTGCGATTTT
7051194 GATT
1 GATT
7051198 TGCCTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.03, G:0.23, T:0.55
Consensus pattern (18 bp):
GATTGTAATTGCGATTTT
Found at i:7053295 original size:12 final size:12
Alignment explanation
Indices: 7053278--7053302 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7053268 TCTTCGGGGA
7053278 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7053290 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7053302 C
1 C
7053303 AGGGTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7054539 original size:20 final size:20
Alignment explanation
Indices: 7054516--7054711 Score: 101
Period size: 20 Copynumber: 9.7 Consensus size: 20
7054506 ATTAAAAGCT
7054516 GAGTTGCGAATTCGAAAATC
1 GAGTTGCGAATTCGAAAATC
* ** *
7054536 GAGTTGCTAAAAC-AAAATTT
1 GAGTTGCGAATTCGAAAA-TC
* *
7054556 GTGTTGCGAAATT-GAAACTC
1 GAGTTGCG-AATTCGAAAATC
* *
7054576 GCGTTGCGAATTAGAAAATC
1 GAGTTGCGAATTCGAAAATC
** ** *
7054596 TTGTTGCGAAAACGAAACTC
1 GAGTTGCGAATTCGAAAATC
* **
7054616 GTGTTGCGAATTTAAAAATC
1 GAGTTGCGAATTCGAAAATC
* *** *
7054636 GAGTTACGAAAAAGAAATTC
1 GAGTTGCGAATTCGAAAATC
* *
7054656 GTGTTGCGAAATT-GTCAAATTC
1 GAGTTGCG-AATTCG--AAAATC
* *
7054678 GAGTTGCGAATTCCAAATTC
1 GAGTTGCGAATTCGAAAATC
7054698 GAGTTGCGAATTCG
1 GAGTTGCGAATTCG
7054712 GAAACTGTGT
Statistics
Matches: 130, Mismatches: 38, Indels: 16
0.71 0.21 0.09
Matches are distributed among these distances:
19 8 0.06
20 98 0.75
21 11 0.08
22 13 0.10
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (20 bp):
GAGTTGCGAATTCGAAAATC
Found at i:7054556 original size:60 final size:60
Alignment explanation
Indices: 7054492--7054666 Score: 181
Period size: 60 Copynumber: 2.9 Consensus size: 60
7054482 TACCCAAAAC
* * *
7054492 ATTTGTGTTGAGAAATTAAAAGCT-GAGTTGCGAATTCGAAAATCGAGTTGCTAAAACAAA
1 ATTTGTGTTGCGAAATTAAAA-CTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAACAAA
* * ** *
7054552 ATTTGTGTTGCGAAATTGAAACTCGCGTTGCGAATTAGAAAATCTTGTTGCGAAAACGAA
1 ATTTGTGTTGCGAAATTAAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAACAAA
* * * * * ** * *
7054612 ACTCGTGTTGCGAATTTAAAAATCGAGTTACGAAAAAGAAATTCGTGTTGCGAAA
1 ATTTGTGTTGCGAAATTAAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAA
7054667 TTGTCAAATT
Statistics
Matches: 95, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
59 2 0.02
60 93 0.98
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (60 bp):
ATTTGTGTTGCGAAATTAAAACTCGAGTTGCGAATTAGAAAATCGAGTTGCGAAAACAAA
Found at i:7054627 original size:40 final size:40
Alignment explanation
Indices: 7054556--7054665 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
7054546 AACAAAATTT
** *
7054556 GTGTTGCGAAATTGAAACTCGCGTTGCGAA-TTAGAAAATC
1 GTGTTGCGAAAAAGAAACTCGTGTTGCGAATTTA-AAAATC
* *
7054596 TTGTTGCGAAAACGAAACTCGTGTTGCGAATTTAAAAATC
1 GTGTTGCGAAAAAGAAACTCGTGTTGCGAATTTAAAAATC
* * *
7054636 GAGTTACGAAAAAGAAATTCGTGTTGCGAA
1 GTGTTGCGAAAAAGAAACTCGTGTTGCGAA
7054666 ATTGTCAAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
40 57 0.95
41 3 0.05
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (40 bp):
GTGTTGCGAAAAAGAAACTCGTGTTGCGAATTTAAAAATC
Found at i:7057527 original size:35 final size:35
Alignment explanation
Indices: 7057476--7057543 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
7057466 AACACAATCA
*
7057476 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
1 TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
* * *
7057511 TCAATTACATTTTAAACCTCAAATTCTAAAATA
1 TCAATTACATTCTAAACCCCAAATTCCAAAATA
7057544 CTTTAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (35 bp):
TCAATTACATTCTAAACCCCAAATTCCAAAATAAT
Found at i:7057595 original size:35 final size:35
Alignment explanation
Indices: 7057548--7057622 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 35
7057538 AAAATACTTT
7057548 AATTTAGGGTTTAGAATGTAATTAAAGTATTTTAG
1 AATTTAGGGTTTAGAATGTAATTAAAGTATTTTAG
* * *
7057583 AATTT-GGAGTTTAGAATGTAATTGAAGTGTTTTGG
1 AATTTAGG-GTTTAGAATGTAATTAAAGTATTTTAG
7057618 AATTT
1 AATTT
7057623 TAAACATGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
34 2 0.06
35 34 0.94
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (35 bp):
AATTTAGGGTTTAGAATGTAATTAAAGTATTTTAG
Found at i:7060260 original size:18 final size:19
Alignment explanation
Indices: 7060225--7060261 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7060215 CATGGAATGT
7060225 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
7060245 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
7060262 TGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:7065669 original size:16 final size:15
Alignment explanation
Indices: 7065648--7065687 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
7065638 TTCGATTTGT
7065648 TATTTACCTGATCTGA
1 TATTTACCTGA-CTGA
*
7065664 TATTTACCTGACTTA
1 TATTTACCTGACTGA
7065679 TATATTACC
1 TAT-TTACC
7065688 ATTGATGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (15 bp):
TATTTACCTGACTGA
Found at i:7065860 original size:13 final size:13
Alignment explanation
Indices: 7065839--7065899 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
7065829 GATTATTAAT
7065839 ATACTTTATATTTA
1 ATAC-TTATATTTA
7065853 ATACTTATATTT-
1 ATACTTATATTTA
*
7065865 ATA--TA-CTTTA
1 ATACTTATATTTA
7065875 ATACGTTATATTTA
1 ATAC-TTATATTTA
7065889 ATACTTATATT
1 ATACTTATATT
7065900 ATATAGTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 3 0.08
10 5 0.12
12 3 0.08
13 17 0.43
14 12 0.30
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (13 bp):
ATACTTATATTTA
Found at i:7065862 original size:22 final size:22
Alignment explanation
Indices: 7065837--7066044 Score: 77
Period size: 22 Copynumber: 9.5 Consensus size: 22
7065827 ATGATTATTA
7065837 ATATACTTTATATTTAATACTT
1 ATATACTTTATATTTAATACTT
7065859 ATAT--TTATATACTTTAATACGTT
1 ATATACTT-TATA-TTTAATAC-TT
* *
7065882 ATAT--TTAATACTT-ATA-TT
1 ATATACTTTATATTTAATACTT
*
7065900 ATATAGTTTAATACTTT-ATA-TT
1 ATATACTTT-ATA-TTTAATACTT
* * *
7065922 ATTTACTTTAGTACTTATGTACTT
1 ATATACTTTA-TATTTA-ATACTT
* * *
7065946 ATGTACTTGTATATTTTATATTT
1 ATATACTT-TATATTTAATACTT
7065969 A-ATAC-TTATATTTATATACTT
1 ATATACTTTATATTTA-ATACTT
** *
7065990 -TAATAC-TTATATCCAAACACTT
1 AT-ATACTTTATAT-TTAATACTT
7066012 -TATTACTTTATA-TTATATACTT
1 ATA-TACTTTATATTTA-ATACTT
*
7066034 -TATACTATATA
1 ATATACTTTATA
7066045 ATACATATAC
Statistics
Matches: 144, Mismatches: 23, Indels: 39
0.70 0.11 0.19
Matches are distributed among these distances:
18 6 0.04
20 14 0.10
21 28 0.19
22 60 0.42
23 21 0.15
24 13 0.09
25 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (22 bp):
ATATACTTTATATTTAATACTT
Found at i:7065910 original size:35 final size:36
Alignment explanation
Indices: 7065839--7066001 Score: 161
Period size: 36 Copynumber: 4.3 Consensus size: 36
7065829 GATTATTAAT
7065839 ATACTTTATATTTAATACTTATATTTATATACTTTA
1 ATACTTTATATTTAATACTTATATTTATATACTTTA
* *
7065875 ATACGTTATATTTAATACTTATA-TTATATAGTTTA
1 ATACTTTATATTTAATACTTATATTTATATACTTTA
* *
7065910 ATACTTTATATTATTTACTTTAGTACTTATGTACTTATGTACTTGT-
1 ATAC-TT-TA-TATTTA----A-TACTTA--TATTTATATACTT-TA
*
7065956 ATATTTTATATTTAATACTTATATTTATATACTTTA
1 ATACTTTATATTTAATACTTATATTTATATACTTTA
7065992 ATAC-TTATAT
1 ATACTTTATAT
7066002 CCAAACACTT
Statistics
Matches: 105, Mismatches: 9, Indels: 27
0.74 0.06 0.19
Matches are distributed among these distances:
35 22 0.21
36 37 0.35
37 2 0.02
38 12 0.11
39 1 0.01
42 1 0.01
43 12 0.11
44 2 0.02
45 4 0.04
46 11 0.10
47 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.55
Consensus pattern (36 bp):
ATACTTTATATTTAATACTTATATTTATATACTTTA
Found at i:7065979 original size:13 final size:14
Alignment explanation
Indices: 7065961--7065989 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7065951 CTTGTATATT
7065961 TTATATTTA-ATAC
1 TTATATTTATATAC
7065974 TTATATTTATATAC
1 TTATATTTATATAC
7065988 TT
1 TT
7065990 TAATACTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTATATTTATATAC
Found at i:7066034 original size:14 final size:14
Alignment explanation
Indices: 7066011--7066044 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7066001 TCCAAACACT
7066011 TTAT-TACTTTATA
1 TTATATACTTTATA
7066024 TTATATACTTTATA
1 TTATATACTTTATA
*
7066038 CTATATA
1 TTATATA
7066045 ATACATATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATATACTTTATA
Found at i:7066076 original size:117 final size:116
Alignment explanation
Indices: 7065837--7066076 Score: 260
Period size: 117 Copynumber: 2.1 Consensus size: 116
7065827 ATGATTATTA
* ** *
7065837 ATATACTTTATATTTAATACTTATATTTATATACTTTAATACGTTATATTTAATACTTATATTAT
1 ATATATTTTATATTTAATACTTATATTTATATACTTTAATACGTTATATCAAACACTTATATTAT
* * * *
7065902 ATAGTTTAATACTTTATATTATTTACTTTAGTACTTATGTACTTATGTACTT
66 ATAGTTTAATACTTTATATTATATACTATAGTACTTA-GTAATTATATACTT
*
7065954 GTATATTTTATATTTAATACTTATATTTATATACTTTAATAC-TTATATCCAAACACTT-TATTA
1 ATATATTTTATATTTAATACTTATATTTATATACTTTAATACGTTATAT-CAAACACTTATATTA
*
7066017 CTTTA-TATTATATACTTTATACTATATAATAC-ATA-TACTTA-TAATT-TATACTTT
65 -TATAGT-TTA-ATACTTTATA-T-TAT-ATACTATAGTACTTAGTAATTATATAC-TT
7066071 ATATAT
1 ATATAT
7066077 GAATATAAAG
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
116 16 0.15
117 63 0.61
118 10 0.10
119 7 0.07
120 5 0.05
121 3 0.03
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (116 bp):
ATATATTTTATATTTAATACTTATATTTATATACTTTAATACGTTATATCAAACACTTATATTAT
ATAGTTTAATACTTTATATTATATACTATAGTACTTAGTAATTATATACTT
Found at i:7068076 original size:21 final size:21
Alignment explanation
Indices: 7068050--7068103 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
7068040 CAATGAGGTA
7068050 GTATCGATACCATGATAAGGG
1 GTATCGATACCATGATAAGGG
*
7068071 GTATCGATACCATGATAAGGT
1 GTATCGATACCATGATAAGGG
7068092 GTATCGATACCA
1 GTATCGATACCA
7068104 AGAAACATCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (21 bp):
GTATCGATACCATGATAAGGG
Found at i:7068195 original size:20 final size:21
Alignment explanation
Indices: 7068125--7068198 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 21
7068115 ATCTAATTTT
* *
7068125 GGTATTGATACC--AGTAGGG
1 GGTATCGATACCATAGTAGAG
*
7068144 GGTATCGATACCCTAGTAGAG
1 GGTATCGATACCATAGTAGAG
* * *
7068165 TAGTATTGATACCATGGTA-AG
1 -GGTATCGATACCATAGTAGAG
7068186 GGTATCGATACCA
1 GGTATCGATACCA
7068199 GGCAACATCG
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
19 11 0.25
20 11 0.25
21 8 0.18
22 14 0.32
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (21 bp):
GGTATCGATACCATAGTAGAG
Found at i:7068206 original size:95 final size:95
Alignment explanation
Indices: 7068050--7068291 Score: 265
Period size: 95 Copynumber: 2.5 Consensus size: 95
7068040 CAATGAGGTA
** *
7068050 GTATCGATACCAT-GATA-AGGGGTATCGATACCATGATAAGGTGTATCGATACCAAGAAACATC
1 GTATCGATACCATAG-TAGAGAAGTATCGATACCATGGTAAGG-GTATCGATACCAAGAAACATC
* ** * ** *
7068113 GAATCTAATTTTGGTATTGATACCAGTAGGGG
64 GAACCTAAAATTGGCATTGATACCAAAAAGGG
* * * * *
7068145 GTATCGATACCCTAGTAGAGTAGTATTGATACCATGGTAAGGGTATCGATACCAGGCAACATCGA
1 GTATCGATACCATAGTAGAGAAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGA
7068210 ACCTAAAATTGGCATTGATACCAAAAAGGG
66 ACCTAAAATTGGCATTGATACCAAAAAGGG
* * * *
7068240 GTATCGGTACCATAGTATAGAAGTATCGGTACCAGGGT-AGTGGTATCGATAC
1 GTATCGATACCATAGTAGAGAAGTATCGATACCATGGTAAG-GGTATCGATAC
7068292 TATTGAGCTT
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
94 2 0.02
95 100 0.81
96 21 0.17
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (95 bp):
GTATCGATACCATAGTAGAGAAGTATCGATACCATGGTAAGGGTATCGATACCAAGAAACATCGA
ACCTAAAATTGGCATTGATACCAAAAAGGG
Found at i:7068711 original size:59 final size:59
Alignment explanation
Indices: 7068612--7068843 Score: 362
Period size: 59 Copynumber: 4.0 Consensus size: 59
7068602 ATTACCAAAT
* *
7068612 GGCACTTCGTGTGC-AAAATGTTAAGAAATTCATACTAAGTGTATGAATTTCTGTATAG
1 GGCACTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTATAG
*
7068670 GGCACTTCGTGTGCTAACATGATAAGAAATTCATATTAAGTGTATGAATTTCTGTATAG
1 GGCACTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTATAG
*
7068729 GGCACTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTATTG
1 GGCACTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTATAG
* * * *
7068788 GGCACCTT-GTGTGCTAA-AGGATAAGGAATTCATACTAAGTGTACGAATTTTTGTAT
1 GGCA-CTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTAT
7068844 GGGAAATTTA
Statistics
Matches: 163, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
58 49 0.30
59 111 0.68
60 3 0.02
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (59 bp):
GGCACTTCGTGTGCTAACATGATAAGAAATTCATACTAAGTGTATGAATTTCTGTATAG
Found at i:7069691 original size:68 final size:68
Alignment explanation
Indices: 7069213--7069682 Score: 726
Period size: 68 Copynumber: 6.9 Consensus size: 68
7069203 AAAAGATCAA
* * *
7069213 GAGGCCTAACTGTGCATATGAAAGAAATGTGTCATTTATGCCAGTTAGATTAAAGACTAAGTGTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
7069278 TTT
66 TTT
* * *
7069281 AAGGCCTAACTGTGCATATGACAGAAATGTGTCATTTATGCTAGTTAGATGAAAGACTAAGTGTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
7069346 TTT
66 TTT
7069349 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
*
7069414 CTT
66 TTT
* * *
7069417 GAGGCCTAACTGTGCATATGATAGAAAGGTGTCATTTATGCTAGTTAGATGAAAGAATAAGTGTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
7069482 TTT
66 TTT
* *
7069485 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGACAGTTAGATGAAAGACTAAGTTTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
7069550 TTT
66 TTT
*
7069553 GAGGCCTAACTGTGCATATGACATAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
1 GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
7069618 TTT
66 TTT
* * * * * * * * *
7069621 GAGGCCTAGCTATGCA-ATTGGCAGAAATGTGTCAATTATGACAATTAGATGAATGATTAAGT
1 GAGGCCTAACTGTGCATA-TGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGT
7069683 ACTGTTGAGT
Statistics
Matches: 371, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
67 1 0.00
68 370 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (68 bp):
GAGGCCTAACTGTGCATATGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGACTAAGTGTC
TTT
Found at i:7069762 original size:81 final size:81
Alignment explanation
Indices: 7069623--7069862 Score: 306
Period size: 81 Copynumber: 3.0 Consensus size: 81
7069613 GTGTCTTTGA
* * * * *
7069623 GGCCTAGCTATGCAATTGGCAGAAATGTGTCAATTATGACAATTAGATGAATGATTAAGTACTGT
1 GGCCTAGCTATGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTACTGT
7069688 TGAGTAAAAGAA-AAGT
66 TGAGTAAAAGAATAA-T
* * *
7069704 GGTCTAGCTTTGCAATTGGCAGAAAGGTATCAATTATGCCAGTTAGATGAACGGTTAAGTACTGT
1 GGCCTAGCTATGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTACTGT
*
7069769 TGAGTAAAATAATAAT
66 TGAGTAAAAGAATAAT
* * * * **
7069785 GGCCTAACTGTG-AATTGGCAAAAAGGTGTCAATTATGCCAGTTAGACGAAC-GTTAAACACTGT
1 GGCCTAGCTATGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTACTGT
*
7069848 TGAGTAAGAGAATAA
66 TGAGTAAAAGAATAA
7069863 AGAAATTTTA
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
79 23 0.17
80 36 0.26
81 78 0.56
82 2 0.01
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.28
Consensus pattern (81 bp):
GGCCTAGCTATGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAGTACTGT
TGAGTAAAAGAATAAT
Found at i:7073491 original size:23 final size:23
Alignment explanation
Indices: 7073411--7073485 Score: 96
Period size: 23 Copynumber: 3.3 Consensus size: 23
7073401 AATCTTATAT
*
7073411 GGCACTACGATGCAATTCTAAGC
1 GGCACTACGATGCAATTCTACGC
*
7073434 GGCACTACGATGCAATTCTACAC
1 GGCACTACGATGCAATTCTACGC
* * * *
7073457 GGCACTTCGGTGTAATTCTACGT
1 GGCACTACGATGCAATTCTACGC
7073480 GGCACT
1 GGCACT
7073486 TCGGTGCATT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (23 bp):
GGCACTACGATGCAATTCTACGC
Found at i:7073501 original size:23 final size:23
Alignment explanation
Indices: 7073410--7073501 Score: 67
Period size: 23 Copynumber: 4.0 Consensus size: 23
7073400 CAATCTTATA
* * * *
7073410 TGGCACTACGATGCAATTCTAAG
1 TGGCACTTCGGTGCAATTATACG
* * * * *
7073433 CGGCACTACGATGCAATTCTACA
1 TGGCACTTCGGTGCAATTATACG
* * *
7073456 CGGCACTTCGGTGTAATTCTACG
1 TGGCACTTCGGTGCAATTATACG
*
7073479 TGGCACTTCGGTGCATTTATACG
1 TGGCACTTCGGTGCAATTATACG
7073502 AGCTGTGGTG
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTATACG
Found at i:7080125 original size:31 final size:30
Alignment explanation
Indices: 7080087--7080146 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
7080077 TTATATAAGC
7080087 TATGTGATAAA-GTGATGGAACATGATATGTT
1 TATGTGATAAAGGT-ATGGAA-ATGATATGTT
*
7080118 TATGTGATAAAGGTATGGAAATTATATGT
1 TATGTGATAAAGGTATGGAAATGATATGT
7080147 CTATACAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 8 0.30
31 17 0.63
32 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (30 bp):
TATGTGATAAAGGTATGGAAATGATATGTT
Found at i:7080413 original size:23 final size:23
Alignment explanation
Indices: 7080368--7080413 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7080358 CAATCTTATA
* *
7080368 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACAGTGCAATTATACG
* *
7080391 TGGCACTTCAGTGCATTTATACG
1 TGGCACTACAGTGCAATTATACG
7080414 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (23 bp):
TGGCACTACAGTGCAATTATACG
Found at i:7083668 original size:18 final size:21
Alignment explanation
Indices: 7083635--7083673 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
7083625 TTGACGGCAC
7083635 ATATAGAAAGAAGAAA-AAAA
1 ATATAGAAAGAAGAAATAAAA
7083655 ATATA-AAA-AAGAAATAAAA
1 ATATAGAAAGAAGAAATAAAA
7083674 CCGATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (21 bp):
ATATAGAAAGAAGAAATAAAA
Done.