Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 78
Found at i:7237172 original size:20 final size:20
Alignment explanation
Indices: 7237140--7237191 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
7237130 TATATATATA
7237140 TATATTATTTTTATT-ATTAT
1 TATATT-TTTTTATTCATTAT
*
7237160 TTTCATTTTTTTATTCATTAT
1 TAT-ATTTTTTTATTCATTAT
7237181 TATATTTTTTT
1 TATATTTTTTT
7237192 TAAAACCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (20 bp):
TATATTTTTTTATTCATTAT
Found at i:7237192 original size:21 final size:20
Alignment explanation
Indices: 7237126--7237193 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
7237116 ATCTTATAAC
*
7237126 TTTATATATATATATATATTATT
1 TTTAT-TAT-TAT-TATATTTTT
*
7237149 TTTATTATTATTTTCA-TTTT
1 TTTATTATTATTAT-ATTTTT
7237169 TTTATTCATTATTATATTTTT
1 TTTATT-ATTATTATATTTTT
7237190 TTTA
1 TTTA
7237194 AAACCTTGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 12 0.31
21 19 0.49
22 3 0.08
23 5 0.13
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTATTATTATTATATTTTT
Found at i:7237408 original size:38 final size:40
Alignment explanation
Indices: 7237356--7237433 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
7237346 AAGTGAGAGG
*
7237356 ATAGCTTTTCTATTTT-TAAATA-TTTGTTGTATATATAT
1 ATAGCTTTTCTATTTTATAAATACTTTGATGTATATATAT
*
7237394 ATAGCTTATT-TATTTTATTAATACTTTGATGTATATATAT
1 ATAGCTT-TTCTATTTTATAAATACTTTGATGTATATATAT
7237434 TTTTTTTTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 13 0.37
39 7 0.20
40 15 0.43
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (40 bp):
ATAGCTTTTCTATTTTATAAATACTTTGATGTATATATAT
Found at i:7237512 original size:9 final size:9
Alignment explanation
Indices: 7237500--7237524 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7237490 CATTATCTTA
7237500 TTTATTTAT
1 TTTATTTAT
7237509 TTTATTTAT
1 TTTATTTAT
7237518 TTTATTT
1 TTTATTT
7237525 TTTCCCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTAT
Found at i:7238510 original size:10 final size:10
Alignment explanation
Indices: 7238495--7238540 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
7238485 TTTCTTGCCA
*
7238495 TTTATTTGTT
1 TTTATTTATT
7238505 TTTATTTA--
1 TTTATTTATT
7238513 TTTATTTATT
1 TTTATTTATT
*
7238523 TCTATTTATT
1 TTTATTTATT
7238533 TTTATTTA
1 TTTATTTA
7238541 CTAACTGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
8 8 0.26
10 23 0.74
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (10 bp):
TTTATTTATT
Found at i:7238517 original size:18 final size:18
Alignment explanation
Indices: 7238494--7238533 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7238484 TTTTCTTGCC
* *
7238494 ATTTATTTGTTTTTATTT
1 ATTTATTTATTTCTATTT
7238512 ATTTATTTATTTCTATTT
1 ATTTATTTATTTCTATTT
7238530 ATTT
1 ATTT
7238534 TTATTTACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (18 bp):
ATTTATTTATTTCTATTT
Found at i:7242025 original size:16 final size:16
Alignment explanation
Indices: 7242004--7242060 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 16
7241994 ATCAAGAACC
7242004 AAAAAGAAAAGAAGCA
1 AAAAAGAAAAGAAGCA
*
7242020 AAAAAGAAAAAACAAGAACAA
1 AAAAAG--AAAAGAAG--C-A
7242041 AAAAAGAAAAGAAGCA
1 AAAAAGAAAAGAAGCA
7242057 AAAA
1 AAAA
7242061 TCAAAAGGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
16 11 0.32
17 1 0.03
18 7 0.21
19 7 0.21
20 1 0.03
21 7 0.21
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAGAAGCA
Found at i:7242029 original size:21 final size:22
Alignment explanation
Indices: 7242005--7242053 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
7241995 TCAAGAACCA
7242005 AAAAGAA-AAGAAGC-AAAAAAG
1 AAAAGAACAAGAA-CAAAAAAAG
7242026 AAAA-AACAAGAACAAAAAAAG
1 AAAAGAACAAGAACAAAAAAAG
7242047 AAAAGAA
1 AAAAGAA
7242054 GCAAAAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.80, C:0.06, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAGAACAAGAACAAAAAAAG
Found at i:7242060 original size:15 final size:16
Alignment explanation
Indices: 7241997--7242029 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7241987 AGATTCAATC
7241997 AAGAACC-AAAAAGAA
1 AAGAACCAAAAAAGAA
*
7242012 AAGAAGCAAAAAAGAA
1 AAGAACCAAAAAAGAA
7242028 AA
1 AA
7242030 AACAAGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.76, C:0.09, G:0.15, T:0.00
Consensus pattern (16 bp):
AAGAACCAAAAAAGAA
Found at i:7242067 original size:21 final size:19
Alignment explanation
Indices: 7242004--7242060 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
7241994 ATCAAGAACC
7242004 AAAAAGAAAAGAAGCAAAA
1 AAAAAGAAAAGAAGCAAAA
* *
7242023 AAGAA-AAAACAAG-AACAA
1 AAAAAGAAAAGAAGCAA-AA
7242041 AAAAAGAAAAGAAGCAAAA
1 AAAAAGAAAAGAAGCAAAA
7242060 A
1 A
7242061 TCAAAAGGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 2 0.06
18 13 0.42
19 14 0.45
20 2 0.06
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAAGAAGCAAAA
Found at i:7242083 original size:37 final size:35
Alignment explanation
Indices: 7241996--7242066 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 35
7241986 AAGATTCAAT
*
7241996 CAAGAACCAAAAAGAAAAGAAGCAAAAAAGAAAAAA
1 CAAGAA-CAAAAAGAAAAGAAGCAAAAAACAAAAAA
*
7242032 CAAGAACAAAAAAAGAAAAGAAGCAAAAATCAAAA
1 CAAGAAC--AAAAAGAAAAGAAGCAAAAAACAAAA
7242067 GGAAAAGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 1 0.03
36 6 0.19
37 24 0.77
ACGTcount: A:0.75, C:0.11, G:0.13, T:0.01
Consensus pattern (35 bp):
CAAGAACAAAAAGAAAAGAAGCAAAAAACAAAAAA
Found at i:7243147 original size:18 final size:18
Alignment explanation
Indices: 7243124--7243159 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7243114 TCAACATCAA
*
7243124 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCTTTGG
7243142 ATATTGGGGCATCTTTGG
1 ATATTGGGGCATCTTTGG
7243160 GGATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (18 bp):
ATATTGGGGCATCTTTGG
Found at i:7243693 original size:36 final size:37
Alignment explanation
Indices: 7243646--7243721 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 37
7243636 GTGCTCACCA
*
7243646 TTGTCTCTCTTGAGATAGTTTCCCTT-GAAACAAA-CT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGGAAA-AAACCT
7243682 TTGTCTCTCTTGAGACAGTTTCCCTTGGAAAAAACCT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGGAAAAAACCT
7243719 TTG
1 TTG
7243722 AAATTGTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGGAAAAAACCT
Found at i:7243961 original size:36 final size:36
Alignment explanation
Indices: 7243893--7243962 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
7243883 GGAACTAAGT
* * *
7243893 TTTGTCTCTCTTGAGACAGTTTTTCTTAAAACAAAA
1 TTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
* *
7243929 TTTGTCTCCCTTGAGACCGTTTCTCATGAAACAA
1 TTTGTCTCCCTTGAGACAGTTTCTCATAAAACAA
7243963 CAGATATCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (36 bp):
TTTGTCTCCCTTGAGACAGTTTCTCATAAAACAAAA
Found at i:7244716 original size:106 final size:106
Alignment explanation
Indices: 7244476--7245018 Score: 818
Period size: 110 Copynumber: 5.0 Consensus size: 106
7244466 ATATCGCGCC
7244476 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
*
7244541 AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
66 AG--T--TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * **
7244586 ACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGACTGGTTGTCAACAAACCA-TTACC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTT-TT
*
7244650 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
7244692 ACTCGAGACAACACAAGTTCAACTTCACAACGAATGGACGTCTGGTTGTCAACAAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
*
7244757 AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
66 AG--T--TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
7244802 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAACAATTTCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTT-T
*
7244867 CAGTTTCAGAGCCAACTTCAACTTCACAGCGAAGGATATTGG
65 CAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
7244909 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTATCAACGAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
* *
7244974 AGTTTCAGATCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
7245015 ACTC
1 ACTC
7245019 AAGATGACAC
Statistics
Matches: 397, Mismatches: 29, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
106 138 0.35
107 97 0.24
108 2 0.01
109 3 0.01
110 154 0.39
111 3 0.01
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (106 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
AGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:7244744 original size:216 final size:213
Alignment explanation
Indices: 7244476--7245216 Score: 1009
Period size: 216 Copynumber: 3.5 Consensus size: 213
7244466 ATATCGCGCC
7244476 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
7244541 AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTC
66 AG-TTC-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTC
* *
7244606 AACTTCACAATGAAGGGACGACTGGTTGTCAACAAACCATTACCCAATTTCAGAGCCAATTTCAA
129 AACTTCACAA-GAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAA
7244671 CTTCACAGCGAAGGATATTGG
193 CTTCACAGCGAAGGATATTGG
* *
7244692 ACTCGAGACAACACAAGTTCAACTTCACAACGAATGGACGTCTGGTTGTCAACAAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
*
7244757 AGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTC
66 AG-TTC-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTC
* * *
7244822 AACTTCACAACGAAGGGACGGCTGGTTGTCAACAAAACAATTTCCCAGTTTCAGAGCCAACTTCA
129 AACTTCACAA-GAAGGGACGACTGGTTGTCAAC-AAACAATTTCCCAATTTCAGAGCCAATTTCA
7244887 ACTTCACAGCGAAGGATATTGG
192 ACTTCACAGCGAAGGATATTGG
* * *
7244909 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTATCAACGAACCACTTTTC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
* * *
7244974 AG-T-TTCAGA-TCCAATTTCAACTTCACAGTGAAGGATATTGGACT----------CAAGAT-G
66 AGTTCTTCAGAGT-CAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCA
*
7245025 A---CACAAGAAGGGACGACTGGTTGTCAACAAACAATTTTCCAATTTCAGAGCCAATTTCAACT
130 ACTTCACAAGAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACT
*
7245087 TCACAGCGAAGGATATTGA
195 TCACAGCGAAGGATATTGG
* * * ** * * *
7245106 ACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAA-TAATTTCC
1 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTT-T
* * * *
7245170 CAGTTC--CGGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTCG
65 CAGTTCTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
7245217 GAACAATACT
Statistics
Matches: 479, Mismatches: 38, Indels: 33
0.87 0.07 0.06
Matches are distributed among these distances:
196 4 0.01
197 133 0.28
198 22 0.05
199 5 0.01
202 1 0.00
203 5 0.01
212 1 0.00
213 38 0.08
215 1 0.00
216 158 0.33
217 111 0.23
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (213 bp):
ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACCACTTTTC
AGTTCTTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAA
CTTCACAAGAAGGGACGACTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTT
CACAGCGAAGGATATTGG
Found at i:7245098 original size:91 final size:92
Alignment explanation
Indices: 7244934--7245109 Score: 257
Period size: 91 Copynumber: 1.9 Consensus size: 92
7244924 AGTTCAACTT
* * * * *
7244934 CACAACGAAGGGACGGCTGGTTATCAACGAACCACTTTTCAGTTTCAGATCCAATTTCAACTTCA
1 CACAACGAAGGGACGACTGGTTATCAACGAAACAATTTTCAATTTCAGAGCCAATTTCAACTTCA
* *
7244999 CAGTGAAGGATATTGGACTCAAGATGA
66 CAGCGAAGGATATTGAACTCAAGATGA
*
7245026 CACAA-GAAGGGACGACTGGTTGTCAAC-AAACAATTTTCCAATTTCAGAGCCAATTTCAACTTC
1 CACAACGAAGGGACGACTGGTTATCAACGAAACAATTTT-CAATTTCAGAGCCAATTTCAACTTC
7245089 ACAGCGAAGGATATTGAACTC
65 ACAGCGAAGGATATTGAACTC
7245110 GAGACAACAC
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
90 8 0.11
91 62 0.83
92 5 0.07
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (92 bp):
CACAACGAAGGGACGACTGGTTATCAACGAAACAATTTTCAATTTCAGAGCCAATTTCAACTTCA
CAGCGAAGGATATTGAACTCAAGATGA
Found at i:7245187 original size:197 final size:199
Alignment explanation
Indices: 7244827--7245215 Score: 550
Period size: 197 Copynumber: 2.0 Consensus size: 199
7244817 AGTTCAACTT
* *
7244827 CACAACGAAGGGACGGCTGGTTGTCAACAAAACAATTTCCCAGTTTCAGAGCCAACTTCAACTTC
1 CACAACGAAGGGACGACTGGTTGTCAACAAAACAATTTCCCAATTTCAGAGCCAACTTCAACTTC
* * **
7244892 ACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTA
66 ACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTA
* * * * * **
7244957 TCAACGAACCACTTTTCAGTTTCAGATCCAATTTCAACTTCACAGTGAAGGATATTGGACTCAAG
131 TCAACGAAACAATTTCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAG
7245022 ATGA
196 ATGA
* *
7245026 CACAA-GAAGGGACGACTGGTTGTCAAC-AAACAATTTTCCAATTTCAGAGCCAATTTCAACTTC
1 CACAACGAAGGGACGACTGGTTGTCAACAAAACAATTTCCCAATTTCAGAGCCAACTTCAACTTC
* * * *
7245089 ACAGCGAAGGATATTGAACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTG
66 ACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTA
* * *
7245154 TCAAC-AAATAATTTCCCAGTTCCGGAGCCAATTTCAACTTCACAACGGAGGATATTGGACTC
131 TCAACGAAACAATTT-CCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
7245216 GGAACAATAC
Statistics
Matches: 167, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
196 6 0.04
197 135 0.81
198 21 0.13
199 5 0.03
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (199 bp):
CACAACGAAGGGACGACTGGTTGTCAACAAAACAATTTCCCAATTTCAGAGCCAACTTCAACTTC
ACAGCGAAGGATATTGAACTCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTA
TCAACGAAACAATTTCCAGTTCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCAAG
ATGA
Found at i:7246542 original size:18 final size:17
Alignment explanation
Indices: 7246503--7246545 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7246493 ATTATATGGA
7246503 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
7246519 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
7246537 TATTATTAT
1 TATTATTAT
7246546 ACGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:7246807 original size:2 final size:2
Alignment explanation
Indices: 7246802--7246856 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
7246792 CTTATAACTT
7246802 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7246844 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
7246857 TTATTTTATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7247141 original size:2 final size:2
Alignment explanation
Indices: 7247134--7247180 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7247124 TACTTTGATG
7247134 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7247176 TA TA T
1 TA TA T
7247181 TCATTTTTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7248623 original size:20 final size:21
Alignment explanation
Indices: 7248568--7248623 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
7248558 CAGTTTCCAA
* *
7248568 ATTCGCAACGCGAATATCCAG
1 ATTCGCAACGCGATTATCAAG
* * *
7248589 ATTCGCAATGTGATTGT-AAG
1 ATTCGCAACGCGATTATCAAG
7248609 ATTCGCAACGCGATT
1 ATTCGCAACGCGATT
7248624 TTGAAAAATA
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (21 bp):
ATTCGCAACGCGATTATCAAG
Found at i:7248675 original size:22 final size:21
Alignment explanation
Indices: 7248650--7248716 Score: 93
Period size: 19 Copynumber: 3.2 Consensus size: 21
7248640 GAGAGTTTGA
7248650 AAAACGTGTTGTTGCGATAGTG
1 AAAA-GTGTTGTTGCGATAGTG
7248672 AAAAAGTGTTGTTGCGATAGTG
1 -AAAAGTGTTGTTGCGATAGTG
*
7248694 AAAA-AG-TGTTGCGATAGTG
1 AAAAGTGTTGTTGCGATAGTG
7248713 AAAA
1 AAAA
7248717 ATCTAAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
19 17 0.40
20 1 0.02
21 4 0.09
22 17 0.40
23 4 0.09
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (21 bp):
AAAAGTGTTGTTGCGATAGTG
Found at i:7248705 original size:19 final size:21
Alignment explanation
Indices: 7248647--7248717 Score: 101
Period size: 22 Copynumber: 3.3 Consensus size: 21
7248637 TGCGAGAGTT
7248647 TGAAAAACGTGTTGTTGCGATAG
1 TGAAAAA-G-GTTGTTGCGATAG
7248670 TGAAAAAGTGTTGTTGCGATAG
1 TGAAAAAG-GTTGTTGCGATAG
7248692 TGAAAAA-G-TGTTGCGATAG
1 TGAAAAAGGTTGTTGCGATAG
7248711 TGAAAAA
1 TGAAAAA
7248718 TCTAAAATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 18 0.38
20 1 0.02
22 22 0.46
23 7 0.15
ACGTcount: A:0.37, C:0.06, G:0.30, T:0.28
Consensus pattern (21 bp):
TGAAAAAGGTTGTTGCGATAG
Found at i:7249124 original size:19 final size:20
Alignment explanation
Indices: 7249086--7249126 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
7249076 TTCTTAAGAA
7249086 ATCGCAACGTGAACTTGGACT
1 ATCGCAACG-GAACTTGGACT
*
7249107 ATCGCAAC-GAATTTGGACT
1 ATCGCAACGGAACTTGGACT
7249126 A
1 A
7249127 ATGTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
21 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (20 bp):
ATCGCAACGGAACTTGGACT
Found at i:7249201 original size:20 final size:20
Alignment explanation
Indices: 7249176--7249228 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
7249166 GTATTGCGAT
7249176 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
7249196 ATCGCGTTGCGATAGTCAGA
1 ATCGCGTTGCGATAGTCAGA
*
7249216 ATCGTGTTGCGAT
1 ATCGCGTTGCGAT
7249229 TTACATATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGA
Found at i:7249332 original size:40 final size:40
Alignment explanation
Indices: 7249287--7249432 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 40
7249277 TATTATTGCG
* *
7249287 TTGCGATAGTCAGA-ATCGCGTTGCGAATCTGGAAACTGAT
1 TTGCGATACT-AGAGATCGCGTTGCGAATATGGAAACTGAT
* * ** * *
7249327 TTGCGATACTGGAGATCGCGTTGCG-ATTTACATATTCGCA-
1 TTGCGATACTAGAGATCGCGTTGCGAATATGGAAACT-G-AT
* *
7249367 TTGCGATAGTTA-AAATCGCGTTGCGAATATGGAAACTGAT
1 TTGCGATA-CTAGAGATCGCGTTGCGAATATGGAAACTGAT
*
7249407 TTGCGATACTGGAGATCGCGTTGCGA
1 TTGCGATACTAGAGATCGCGTTGCGA
7249433 TTTAGAGATC
Statistics
Matches: 81, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
39 10 0.12
40 63 0.78
41 8 0.10
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (40 bp):
TTGCGATACTAGAGATCGCGTTGCGAATATGGAAACTGAT
Found at i:7249350 original size:20 final size:20
Alignment explanation
Indices: 7249327--7249433 Score: 58
Period size: 20 Copynumber: 5.3 Consensus size: 20
7249317 GGAAACTGAT
7249327 TTGCGATACTGGAGATCGCG
1 TTGCGATACTGGAGATCGCG
* ** * *
7249347 TTGCGAT-TTACATATTCGCA
1 TTGCGATACTGGAGA-TCGCG
* ** *
7249367 TTGCGATAGTTAAAATCGCG
1 TTGCGATACTGGAGATCGCG
* **
7249387 TTGCGAATA-TGGA-AACTGAT
1 TTGCG-ATACTGGAGATC-GCG
7249407 TTGCGATACTGGAGATCGCG
1 TTGCGATACTGGAGATCGCG
7249427 TTGCGAT
1 TTGCGAT
7249434 TTAGAGATCA
Statistics
Matches: 63, Mismatches: 18, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
19 8 0.13
20 47 0.75
21 8 0.13
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (20 bp):
TTGCGATACTGGAGATCGCG
Found at i:7249389 original size:80 final size:80
Alignment explanation
Indices: 7249287--7249436 Score: 273
Period size: 80 Copynumber: 1.9 Consensus size: 80
7249277 TATTATTGCG
* *
7249287 TTGCGATAGTCAGAATCGCGTTGCGAATCTGGAAACTGATTTGCGATACTGGAGATCGCGTTGCG
1 TTGCGATAGTCAAAATCGCGTTGCGAATATGGAAACTGATTTGCGATACTGGAGATCGCGTTGCG
7249352 ATTTACATATTCGCA
66 ATTTACATATTCGCA
*
7249367 TTGCGATAGTTAAAATCGCGTTGCGAATATGGAAACTGATTTGCGATACTGGAGATCGCGTTGCG
1 TTGCGATAGTCAAAATCGCGTTGCGAATATGGAAACTGATTTGCGATACTGGAGATCGCGTTGCG
7249432 ATTTA
66 ATTTA
7249437 GAGATCACAT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 67 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (80 bp):
TTGCGATAGTCAAAATCGCGTTGCGAATATGGAAACTGATTTGCGATACTGGAGATCGCGTTGCG
ATTTACATATTCGCA
Found at i:7250305 original size:263 final size:265
Alignment explanation
Indices: 7249798--7250309 Score: 791
Period size: 263 Copynumber: 1.9 Consensus size: 265
7249788 ATAGTGGAAG
* *
7249798 ATGTTTGTTTCGGAAGAGGACATTTGGTGTGGGGTCAGGCATTGGCTTGTAAACCAATACGAAAG
1 ATGTTTGTTTAGGAAGAGGACATTTGGTGTGGGGTCAGGCATTGGCTTGTAAACAAATACGAAAG
*
7249863 ATAATATATTCATGTTTAGTTAGTTTGTACAATTAAATGAATAAATTTCTTCTTCTTCGTATTCG
66 AAAATATATTCATGTTTAGTTAGTTTGTACAATTAAATGAATAAATTTCTTCTTCTTCGTATTCG
* *
7249928 TTTAGTAAAGAATTTAATTTGTTCGTATTCATTCATTAAAATAATAAAAGAATGAGCATAAAATA
131 TTTAATAAAGAATATAATTTGTTCGTATTCATTCATTAAAATAATAAAAGAATGAGCATAAAATA
* *
7249993 TAATTTTCTTTTAAATCAAATAAACATTCCTAAAAAATAATATAAATAAACAAATCCGAATGAGC
196 TAATTTTCTTTTAAATCAAATAAAAATTCATAAAAAATAATATAAATAAACAAATCCGAATGAGC
7250058 ATAAA
261 ATAAA
* **
7250063 ATGTTTGTTTAGGAAGAGGACATTTGGTGTGGGGTCAGGCATTGGCTTGTAAACAAATGCGAGCG
1 ATGTTTGTTTAGGAAGAGGACATTTGGTGTGGGGTCAGGCATTGGCTTGTAAACAAATACGAAAG
* * * *
7250128 AAAATATATTCATGTTTCGTTAGTTTGTTCAGTTAAATGAATATAATTT-TT-TGT-TT-GTGTT
66 AAAATATATTCATGTTTAGTTAGTTTGTACAATTAAATGAATA-AATTTCTTCT-TCTTCGTATT
* * * *
7250189 CGTTTAATAATGAATATAGTTTGTTCGTGTTCATTCATTAAAATAATAAACGAATGAGCATAAAA
129 CGTTTAATAAAGAATATAATTTGTTCGTATTCATTCATTAAAATAATAAAAGAATGAGCATAAAA
*
7250254 TGTAATTTTCTTTTAAATCAAATAAAAATTCATAAAAAGA-AATATAAATAAACAAA
194 TATAATTTTCTTTTAAATCAAATAAAAATTCATAAAAA-ATAATATAAATAAACAAA
7250310 GATAAATATA
Statistics
Matches: 225, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
263 114 0.51
264 4 0.02
265 102 0.45
266 5 0.02
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (265 bp):
ATGTTTGTTTAGGAAGAGGACATTTGGTGTGGGGTCAGGCATTGGCTTGTAAACAAATACGAAAG
AAAATATATTCATGTTTAGTTAGTTTGTACAATTAAATGAATAAATTTCTTCTTCTTCGTATTCG
TTTAATAAAGAATATAATTTGTTCGTATTCATTCATTAAAATAATAAAAGAATGAGCATAAAATA
TAATTTTCTTTTAAATCAAATAAAAATTCATAAAAAATAATATAAATAAACAAATCCGAATGAGC
ATAAA
Found at i:7250351 original size:14 final size:13
Alignment explanation
Indices: 7250332--7250370 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 13
7250322 ATTTAATTAA
7250332 ATAAACAAATAATC
1 ATAAACAAATAA-C
7250346 ATAAACAAATGAAC
1 ATAAACAAAT-AAC
7250360 ATAAACAAATA
1 ATAAACAAATA
7250371 GATTATCGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 1 0.04
14 21 0.88
15 2 0.08
ACGTcount: A:0.67, C:0.13, G:0.03, T:0.18
Consensus pattern (13 bp):
ATAAACAAATAAC
Found at i:7256276 original size:23 final size:23
Alignment explanation
Indices: 7256250--7256333 Score: 141
Period size: 23 Copynumber: 3.7 Consensus size: 23
7256240 ATATATTAGA
*
7256250 TAGCGCTTATAAAATGTAATAGG
1 TAGCGCTTATATAATGTAATAGG
7256273 TAGCGCTTATATAATGTAATAGG
1 TAGCGCTTATATAATGTAATAGG
**
7256296 TAGCGCTTATATAATAAAATAGG
1 TAGCGCTTATATAATGTAATAGG
7256319 TAGCGCTTATATAAT
1 TAGCGCTTATATAAT
7256334 AAAATAGGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (23 bp):
TAGCGCTTATATAATGTAATAGG
Found at i:7256405 original size:23 final size:23
Alignment explanation
Indices: 7256370--7256417 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7256360 ATCAAGTACA
* *
7256370 ATAACATATTAGGTAGCTCTTAT
1 ATAACATAATAGGTAGCGCTTAT
* *
7256393 ATAACGTAATAGGTATCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7256416 AT
1 AT
7256418 TGACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7256852 original size:200 final size:198
Alignment explanation
Indices: 7256435--7257143 Score: 765
Period size: 200 Copynumber: 3.5 Consensus size: 198
7256425 TTTTTAAAGT
* * * *
7256435 AAACCGGTATATTTATACCGGTAACATTGCAAATTTACCTATTACATTATTATTATCGGTTACGA
1 AAACCGGTATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
* ** ** *
7256500 TGTTTTTTAGATCGATACAATTT-TAAATGTATCGACACTTTATGCTTGCA-CCTGGTTGGGCAT
66 TATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCCT--TT-----T
* * * * *
7256563 TCA-TATTTCATTCTGGAAAAAAATATCGACACAAACTAACAACGTGTCGATACAATAT-TTAGA
124 T-AGTA-TTCATTCTGGACAAAAGTATCGACACAAATTCACAA-GTGTCGATACATTATGTT-GA
*
7256626 CCTATTCTCTCATA
185 CCTATTTTCTCATA
* *
7256640 AAACCGGTATATTTATACCGATTACATTGAAAATTTACCTATTACATTATACTTAT-GAGTTTCG
1 AAACCGGTATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATCG-GTTTCG
** *
7256704 ATATTTCCGGGATCGATATTTTTTATAAATGTATCGACACTTTATGGTTGCACCCTTTTTAGTAT
65 ATATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCCTTTTTAGTAT
* *
7256769 TCATTCTGGACCAAAAGTATCGACACAAATTCAGCAAGTGTCGATACTTTATGCTGACCTATTTT
130 TCATTCTGGA-CAAAAGTATCGACACAAATTCA-CAAGTGTCGATACATTATGTTGACCTATTTT
*
7256834 ATCATA
193 CTCATA
* * *
7256840 AAACCGGTATATTTATATCGGTTACATTGTAAATTTACCTAATACATTATAATTATCGGTTTCGA
1 AAACCGGTATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
* * *
7256905 TATTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG-TGCACCTCGTTTGT-GC
66 TATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATG-GTTGCACC-C-TTTTTAGT
* * *
7256968 ATTCATCCTGGACAATAAGTATCGACACAAATTACACAAGTGTTGATACATTATGTTGACCTGTT
128 ATTCATTCTGGACAA-AAGTATCGACACAAATT-CACAAGTGTCGATACATTATGTTGACCTATT
*
7257033 TTCTAAT-
191 TTCTCATA
* * * * *
7257040 TAACCGATATATTTATACCGGTTACATT-ATTAATTTACCTATTACATTATAATTATTGGTTTTG
1 AAACCGGTATATTTATACCGGTTACATTGA-AAATTTACCTATTACATTATAATTATCGGTTTCG
* * *
7257104 ATGTTTTT-TGAGTCGATAC-TTATATAAAATGTATCGACAC
65 ATATTTTTGGGA-TCGATACTTTTTAT-AAATGTATCGACAC
7257144 ATATTTAGGT
Statistics
Matches: 434, Mismatches: 54, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
199 18 0.04
200 240 0.55
201 66 0.15
202 6 0.01
204 1 0.00
205 74 0.17
206 26 0.06
207 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (198 bp):
AAACCGGTATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATAATTATCGGTTTCGA
TATTTTTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGGTTGCACCCTTTTTAGTATT
CATTCTGGACAAAAGTATCGACACAAATTCACAAGTGTCGATACATTATGTTGACCTATTTTCTC
ATA
Found at i:7260066 original size:200 final size:198
Alignment explanation
Indices: 7259676--7260035 Score: 533
Period size: 200 Copynumber: 1.8 Consensus size: 198
7259666 TTTTTCAACA
* * * * * * * *
7259676 AAGTGTCGATACATGTTGTATACCTATTCTCTCATAAAATAGGTATATTTATACCGGTTACATTG
1 AAGTGTCGATACATATTATAGACCTATTCTCTCATAAAACAGATATATGTATACCAGTTACATTA
* * * * *
7259741 TAAATTTACCTATTATATTATAATTATGGGTTTCGATGTTTTTGGGATCTACACTTTTTGAAAAT
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTTTTAAAAAT
*
7259806 GTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTATGGACAAAAATTATCGACACAATA
131 GTATCGACACTTTATGCGTGCACCCTTTTTGGCATCCATTATGG--AAAAATTATCGACACAATA
7259871 TTAAT
194 TTAAT
* *
7259876 AAGTGTCGATACATATTATAGACCTATTCTCTCATAAAACCGATATATGTATACCAGTTATATTA
1 AAGTGTCGATACATATTATAGACCTATTCTCTCATAAAACAGATATATGTATACCAGTTACATTA
7259941 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACAC-TTTTAATAAA
66 AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTTTTAA-AAA
7260005 TGTATCGACACTTTATGCGTGCAACCCTTTT
130 TGTATCGACACTTTATGCGTGC-ACCCTTTT
7260036 GGATCGACAC
Statistics
Matches: 142, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
199 5 0.04
200 129 0.91
201 8 0.06
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (198 bp):
AAGTGTCGATACATATTATAGACCTATTCTCTCATAAAACAGATATATGTATACCAGTTACATTA
AAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATCGACACTTTTTAAAAAT
GTATCGACACTTTATGCGTGCACCCTTTTTGGCATCCATTATGGAAAAATTATCGACACAATATT
AAT
Found at i:7260290 original size:251 final size:251
Alignment explanation
Indices: 7259780--7260271 Score: 697
Period size: 251 Copynumber: 2.0 Consensus size: 251
7259770 GTTTCGATGT
* * * *
7259780 TTTTGGGATCTACACTTTTTGAAAATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCAT
1 TTTT-GGATCGACACTCTATGAAAATGTATCGACACTTTATGCATTCACCCTTTTTGGCATCCAT
* * * *
7259845 TATGGACAAAAATTATCGACACAATATTAATAAGTGTCGATACATATTATAGACCTATTCTCTCA
65 TATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATTCTCTCA
*
7259910 TAAAACCGATATATGTATACCAGTTATATTAAAAAATTACCTATTACATTATAATTATGGGTTTC
130 TAAAACCGATATATGTATACCAGTTATATTAAAAAATTACCCATTACATTATAATTATGGGTTTC
* *
7259975 GATGTTTTTGGGATCGACACTTTTAATAAATGTATCGACACTTTATGCGTGCAACCC
195 GATGTTTTTGGGATCGACACTTTTAATAAATGGATCGACACTTTATGCGTGAAACCC
*
7260032 TTTTGGATCGACACTCTATGAAAATGTATCGACACTTTGTAG-ATTCACCCTTTTTGGCATCCAT
1 TTTTGGATCGACACTCTATGAAAATGTATCGACACTTTAT-GCATTCACCCTTTTTGGCATCCAT
* * * *
7260096 TCTGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATGTTGTAGACATATT-TTTCA
65 TATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATTCTCTCA
* * *
7260160 TAAAACC-AGTATATTTATACCGGTTATATTGAAAAATTACCCATTACATTATAATTATGGGTTT
130 TAAAACCGA-TATATGTATACCAGTTATATTAAAAAATTACCCATTACATTATAATTATGGGTTT
** * *
7260224 CGATGTTTTTTGGG-TCGTTACTTTTTATATATGGATCTG-CACTTTATG
194 CGATG-TTTTTGGGATCGACACTTTTAATAAATGGATC-GACACTTTATG
7260272 GGAAACTTTA
Statistics
Matches: 214, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
249 1 0.00
250 94 0.44
251 114 0.53
252 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (251 bp):
TTTTGGATCGACACTCTATGAAAATGTATCGACACTTTATGCATTCACCCTTTTTGGCATCCATT
ATGGACAAAAAGTATCGACACAATACTAATAAGTGTCGATAAATATTATAGACATATTCTCTCAT
AAAACCGATATATGTATACCAGTTATATTAAAAAATTACCCATTACATTATAATTATGGGTTTCG
ATGTTTTTGGGATCGACACTTTTAATAAATGGATCGACACTTTATGCGTGAAACCC
Found at i:7262238 original size:19 final size:21
Alignment explanation
Indices: 7262165--7262229 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
7262155 CCCCTTATGC
* * *
7262165 CTCTCAAGTGTATCTTGGACT
1 CTCTCAAGTTTCTCTTCGACT
7262186 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
7262207 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
7262228 CT
1 CT
7262230 TGATTTTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.15, C:0.31, G:0.12, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:7262376 original size:18 final size:18
Alignment explanation
Indices: 7262353--7262401 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
7262343 CTTCTTTCTT
*
7262353 CTCCTCTGCCTCCACTAC
1 CTCCTCTACCTCCACTAC
* *
7262371 CTCCTCTACCTCCATTGC
1 CTCCTCTACCTCCACTAC
7262389 CTCCTCTACCTCC
1 CTCCTCTACCTCC
7262402 TTGCCAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.10, C:0.55, G:0.04, T:0.31
Consensus pattern (18 bp):
CTCCTCTACCTCCACTAC
Found at i:7262402 original size:9 final size:9
Alignment explanation
Indices: 7262353--7262402 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
7262343 CTTCTTTCTT
*
7262353 CTCCTCTGC
1 CTCCTCTAC
*
7262362 CTCCACTAC
1 CTCCTCTAC
7262371 CTCCTCTAC
1 CTCCTCTAC
*
7262380 CTCCAT-TGC
1 CTCC-TCTAC
7262389 CTCCTCTAC
1 CTCCTCTAC
7262398 CTCCT
1 CTCCT
7262403 TGCCAATAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
8 1 0.03
9 32 0.94
10 1 0.03
ACGTcount: A:0.10, C:0.54, G:0.04, T:0.32
Consensus pattern (9 bp):
CTCCTCTAC
Found at i:7265006 original size:2 final size:2
Alignment explanation
Indices: 7264999--7265055 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
7264989 TATTGTCGTG
7264999 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7265041 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
7265056 GCGGCTGAAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7265263 original size:2 final size:2
Alignment explanation
Indices: 7265258--7265355 Score: 187
Period size: 2 Copynumber: 49.0 Consensus size: 2
7265248 ATTTAAAAAA
7265258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7265300 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7265342 AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT
7265356 TTTAAAATAA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 94 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7266780 original size:11 final size:11
Alignment explanation
Indices: 7266756--7266811 Score: 52
Period size: 9 Copynumber: 5.5 Consensus size: 11
7266746 GCGGTTCAAA
7266756 CCGGTTTT--G
1 CCGGTTTTCAG
7266765 CCGGTTTTCAG
1 CCGGTTTTCAG
*
7266776 CCGG--TTCACC
1 CCGGTTTTCA-G
7266786 CCGGTTTT-A-
1 CCGGTTTTCAG
7266795 CCGGTTTTCAG
1 CCGGTTTTCAG
7266806 CCGGTT
1 CCGGTT
7266812 CATTGTCAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
9 20 0.51
10 5 0.13
11 12 0.31
12 2 0.05
ACGTcount: A:0.07, C:0.30, G:0.27, T:0.36
Consensus pattern (11 bp):
CCGGTTTTCAG
Found at i:7266783 original size:30 final size:30
Alignment explanation
Indices: 7266747--7266813 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
7266737 AGTGAACCGG
*
7266747 CGGTTCAAACCGGTTTTGCCGGTTTTCAGC
1 CGGTTCAAACCGGTTTTACCGGTTTTCAGC
**
7266777 CGGTTCACCCCGGTTTTACCGGTTTTCAGC
1 CGGTTCAAACCGGTTTTACCGGTTTTCAGC
7266807 CGGTTCA
1 CGGTTCA
7266814 TTGTCAGACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.12, C:0.30, G:0.25, T:0.33
Consensus pattern (30 bp):
CGGTTCAAACCGGTTTTACCGGTTTTCAGC
Found at i:7280213 original size:2 final size:2
Alignment explanation
Indices: 7280206--7280239 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7280196 TAGATAGGAA
7280206 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7280240 GAAAATCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7293335 original size:28 final size:28
Alignment explanation
Indices: 7293300--7293359 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
7293290 ATAAAAATAT
* *
7293300 TTAAAAAAA-CCTAATATTTTTTCAAATC
1 TTAAAAAAACCCCAA-ATTTTTTAAAATC
7293328 TTAAAAAAACCCCAAATTTTTTAAAATC
1 TTAAAAAAACCCCAAATTTTTTAAAATC
7293356 TTAA
1 TTAA
7293360 TTTTAATCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 25 0.86
29 4 0.14
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (28 bp):
TTAAAAAAACCCCAAATTTTTTAAAATC
Found at i:7294836 original size:2 final size:2
Alignment explanation
Indices: 7294831--7294855 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7294821 ATTTTTCTTC
7294831 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7294856 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7306896 original size:23 final size:23
Alignment explanation
Indices: 7306866--7306994 Score: 143
Period size: 23 Copynumber: 5.7 Consensus size: 23
7306856 AAATATTTTA
*
7306866 AATCCTAATTAACAATAAACTAG
1 AATCCTAATTAATAATAAACTAG
* ** * *
7306889 AATCCTAAATAATAGCAAATTAT
1 AATCCTAATTAATAATAAACTAG
* *
7306912 AATCCTAATTAATAACAAACTTG
1 AATCCTAATTAATAATAAACTAG
* ** *
7306935 AATCCTAAATAATAATTGATTAG
1 AATCCTAATTAATAATAAACTAG
7306958 AATCCTAATTAATAAT-AACTAG
1 AATCCTAATTAATAATAAACTAG
7306980 AATCCTAATTAATAA
1 AATCCTAATTAATAA
7306995 AACAATAAAT
Statistics
Matches: 86, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
22 19 0.22
23 67 0.78
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (23 bp):
AATCCTAATTAATAATAAACTAG
Found at i:7306938 original size:46 final size:45
Alignment explanation
Indices: 7306866--7306994 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 45
7306856 AAATATTTTA
* * *
7306866 AATCCTAATTAACAATAAACTAGAATCCTAAATAATAGCAAATTAT
1 AATCCTAATTAATAA-AAACTAGAATCCTAAATAATAACAAATTAG
* ***
7306912 AATCCTAATTAATAACAAACTTGAATCCTAAATAATAATTGATTAG
1 AATCCTAATTAATAA-AAACTAGAATCCTAAATAATAACAAATTAG
* *
7306958 AATCCTAATTAATAATAACTAGAATCCTAATTAATAA
1 AATCCTAATTAATAAAAACTAGAATCCTAAATAATAA
7306995 AACAATAAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 19 0.26
46 53 0.74
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (45 bp):
AATCCTAATTAATAAAAACTAGAATCCTAAATAATAACAAATTAG
Found at i:7306939 original size:69 final size:68
Alignment explanation
Indices: 7306866--7306994 Score: 161
Period size: 69 Copynumber: 1.9 Consensus size: 68
7306856 AAATATTTTA
* * *
7306866 AATCCTAATTAACAATAAACTAGAATCCTAAATAATAGCA-AATTATAATCCTAATTAATAACAA
1 AATCCTAAATAACAATAAACTAGAATCCTAAATAATA--ATAACTAGAATCCTAATTAATAACAA
7306930 ACTTG
64 ACTTG
* ** * *
7306935 AATCCTAAATAATAATTGATTAGAATCCTAATTAATAATAACTAGAATCCTAATTAATAA
1 AATCCTAAATAACAATAAACTAGAATCCTAAATAATAATAACTAGAATCCTAATTAATAA
7306995 AACAATAAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
67 1 0.02
68 19 0.37
69 31 0.61
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (68 bp):
AATCCTAAATAACAATAAACTAGAATCCTAAATAATAATAACTAGAATCCTAATTAATAACAAAC
TTG
Found at i:7313278 original size:21 final size:22
Alignment explanation
Indices: 7313254--7313297 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7313244 CTAATTTTTT
7313254 TTAAAAAAAAT-CATATTTTAA
1 TTAAAAAAAATACATATTTTAA
* * *
7313275 TTAATAAATATAGATATTTTAA
1 TTAAAAAAAATACATATTTTAA
7313297 T
1 T
7313298 AAATATTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
TTAAAAAAAATACATATTTTAA
Found at i:7314599 original size:24 final size:23
Alignment explanation
Indices: 7314546--7314593 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
7314536 AATCATAAGG
7314546 AGATCAATTTATCTTTTTCGATT
1 AGATCAATTTATCTTTTTCGATT
*
7314569 AGATCAATTTATCTTTTTTGATT
1 AGATCAATTTATCTTTTTCGATT
7314592 AG
1 AG
7314594 TTTCAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.52
Consensus pattern (23 bp):
AGATCAATTTATCTTTTTCGATT
Found at i:7315350 original size:35 final size:36
Alignment explanation
Indices: 7315311--7315378 Score: 129
Period size: 35 Copynumber: 1.9 Consensus size: 36
7315301 TTAAAGTATA
7315311 GAAGTTTCAATTGTATGCTAAGA-TTTTTAGTTATG
1 GAAGTTTCAATTGTATGCTAAGATTTTTTAGTTATG
7315346 GAAGTTTCAATTGTATGCTAAGATTTTTTAGTT
1 GAAGTTTCAATTGTATGCTAAGATTTTTTAGTT
7315379 TAGGTAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 23 0.72
36 9 0.28
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (36 bp):
GAAGTTTCAATTGTATGCTAAGATTTTTTAGTTATG
Found at i:7316008 original size:20 final size:19
Alignment explanation
Indices: 7315979--7316018 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
7315969 TATGTACAAA
* *
7315979 TATAACTTTAGTTTCAAGTT
1 TATAAATTTAATTT-AAGTT
7315999 TATAAATTTAATTTAAGTT
1 TATAAATTTAATTTAAGTT
7316018 T
1 T
7316019 TGAGCATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (19 bp):
TATAAATTTAATTTAAGTT
Found at i:7319447 original size:35 final size:35
Alignment explanation
Indices: 7319376--7319447 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
7319366 TTGATTCTAT
* *
7319376 TTATAATAAGTCATGTCACTTGGTGAATAGATTTA
1 TTATAATAAGTCATGTCACTTGGTCAATAGACTTA
7319411 TTATAATAAGTCATGTCACTTGGTCAAT-GAACTTA
1 TTATAATAAGTCATGTCACTTGGTCAATAG-ACTTA
7319446 TT
1 TT
7319448 TTTTAGTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.40
Consensus pattern (35 bp):
TTATAATAAGTCATGTCACTTGGTCAATAGACTTA
Found at i:7322118 original size:15 final size:16
Alignment explanation
Indices: 7322092--7322122 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7322082 CAATATTTTG
7322092 TTTAATTTTTTGCATC
1 TTTAATTTTTTGCATC
7322108 TTTAA-TTTTTGCATC
1 TTTAATTTTTTGCATC
7322123 CAGAGTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.19, C:0.13, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTAATTTTTTGCATC
Found at i:7324827 original size:13 final size:12
Alignment explanation
Indices: 7324810--7324841 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
7324800 TTTGCTTCTC
7324810 TTTTTTTTCTTT
1 TTTTTTTTCTTT
7324822 TGTTTTTTTCTTT
1 T-TTTTTTTCTTT
7324835 TTTTTTT
1 TTTTTTT
7324842 CAATGAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:7329745 original size:12 final size:12
Alignment explanation
Indices: 7329728--7329761 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7329718 GAAAATAAAG
7329728 AAAACTTAATGT
1 AAAACTTAATGT
*
7329740 AAAACTTGATGT
1 AAAACTTAATGT
7329752 AAAAC-TAATG
1 AAAACTTAATG
7329762 GCCCTAGCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (12 bp):
AAAACTTAATGT
Found at i:7339052 original size:192 final size:192
Alignment explanation
Indices: 7338702--7339053 Score: 443
Period size: 192 Copynumber: 1.8 Consensus size: 192
7338692 TTGCTACAAT
** * * * *
7338702 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATTTGTGATAATATGAATTATCAATAAC
1 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
** * *
7338767 GAAATCTTATTTAATTTAGTGACGTAATCAACTGTCATAGAATATAAATTATAAAGTGGCATTAT
66 GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
** * *
7338832 CCATAAACGTCATTCATAATATTATTAGGTAACATTTATATTATGTCACTAAAAATGTGATA
131 AAATAAACGTCATCCATAATAATATTAGGTAACATTTATATTATGTCACTAAAAATGTGATA
* ** *
7338894 ATCTCTTTCGTCACATATAGGTTGATTTTAATGTATTATCCGTAACGATATAAATCATCAATAAC
1 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
* * ** * * * *
7338959 GAAATTTTACATAATTTAGTGACATAATTAGTTGTCATTGAATATTAATTATATAGTGACGTTAT
66 GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
* **
7339024 AAATAAATGTCATCCATGCTAATATTAGGT
131 AAATAAACGTCATCCATAATAATATTAGGT
7339054 GACGATACAA
Statistics
Matches: 131, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
192 131 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (192 bp):
ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
AAATAAACGTCATCCATAATAATATTAGGTAACATTTATATTATGTCACTAAAAATGTGATA
Found at i:7339083 original size:192 final size:192
Alignment explanation
Indices: 7338702--7339106 Score: 434
Period size: 192 Copynumber: 2.1 Consensus size: 192
7338692 TTGCTACAAT
** * * * *
7338702 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATTTGTGATAATATGAATTATCAATAAC
1 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
** * *
7338767 GAAATCTTATTTAATTTAGTGACGTAATCAACTGTCATAGAATATAAATTATAAAGTGGCATTAT
66 GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
** * * ** * * *
7338832 CCATAAACGTCATTCATAATATTATTAGGTAACATTTATATTATGTCACTAAAAATGTGATA
131 AAATAAACGTCATCCATAATAATATTAGGTAACATACATACTACGTCACTAAAAATGTGACA
* ** *
7338894 ATCTCTTTCGTCACATATAGGTTGATTTTAATGTATTATCCGTAACGATATAAATCATCAATAAC
1 ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
* * ** * * * *
7338959 GAAATTTTACATAATTTAGTGACATAATTAGTTGTCATTGAATATTAATTATATAGTGACGTTAT
66 GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
* ** * * *
7339024 AAATAAATGTCATCCATGCTAATATTAGGTGACGATACA-ACTACGTTACTAACAATGTGACA
131 AAATAAACGTCATCCATAATAATATTAGGTAAC-ATACATACTACGTCACTAAAAATGTGACA
*
7339086 ATTTTCTTTTCGTCACATATA
1 A-TCTC-TTTCGTCACATATA
7339107 CAATGAAGTT
Statistics
Matches: 172, Mismatches: 38, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
192 152 0.88
193 6 0.03
194 14 0.08
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.39
Consensus pattern (192 bp):
ATCTCTTTCGTCACATATAAGTTGATTTTAATACATTATCCGTAACAATATAAATCATCAATAAC
GAAATCTTACATAATTTAGTGACATAATCAACTGTCATAGAATATAAATTATAAAGTGACATTAT
AAATAAACGTCATCCATAATAATATTAGGTAACATACATACTACGTCACTAAAAATGTGACA
Found at i:7339873 original size:33 final size:33
Alignment explanation
Indices: 7339813--7339877 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
7339803 TCTTTCCCAC
* *
7339813 GATATTATTTCTATTTTAGCCTTAATTTTAAAT
1 GATATTATTTCTACTTTAGCCTCAATTTTAAAT
* * *
7339846 GATATTATTTTTCCTTTATCCTCAATTTTAAA
1 GATATTATTTCTACTTTAGCCTCAATTTTAAA
7339878 AGGCGCAAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.54
Consensus pattern (33 bp):
GATATTATTTCTACTTTAGCCTCAATTTTAAAT
Found at i:7340481 original size:104 final size:104
Alignment explanation
Indices: 7340289--7340498 Score: 249
Period size: 104 Copynumber: 2.0 Consensus size: 104
7340279 GATATAGAGC
* * * * * * * *
7340289 TGGATTCATGCGTTATACATCAAGGAAATGTATGCAGTCTCCTCGCCTGGATCAACTCTTTAACT
1 TGGATTCATACATTAAACAACAAAGAAATGTATGCAGTCTCCTCACCTGGATCAACACCTTAACT
* * * * *
7340354 CCTAGCATTAATGTGACTCGTGTATTTACACATCATTGT
66 ACTACCATTAATATGACTAGTGTATTTACACATCACTGT
* * *
7340393 TGGATTCATACATTAAACAACAAAGAAATGTGTGTAGTCTCCTCACCTGTATCAACACCTTAACT
1 TGGATTCATACATTAAACAACAAAGAAATGTATGCAGTCTCCTCACCTGGATCAACACCTTAACT
* * *
7340458 ACTACCATTCATATGGCTAGTGTATTTGCACATCACTGT
66 ACTACCATTAATATGACTAGTGTATTTACACATCACTGT
7340497 TG
1 TG
7340499 CTTAATAAAT
Statistics
Matches: 87, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
104 87 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (104 bp):
TGGATTCATACATTAAACAACAAAGAAATGTATGCAGTCTCCTCACCTGGATCAACACCTTAACT
ACTACCATTAATATGACTAGTGTATTTACACATCACTGT
Found at i:7341028 original size:36 final size:36
Alignment explanation
Indices: 7340981--7341063 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
7340971 GATTACTAAA
* *
7340981 CCCGTCCCCGTCCCCATTTAACATAAACGATTTT-T
1 CCCGTCCCCGTCACCATTTAACATAAACGGTTTTCT
* * *
7341016 CCCCGTCACCGTCACCGTTTAGCATAAACGGTTTTCT
1 -CCCGTCCCCGTCACCATTTAACATAAACGGTTTTCT
7341053 CCCGTCCCCGT
1 CCCGTCCCCGT
7341064 TTAATTCGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 39 0.98
37 1 0.03
ACGTcount: A:0.18, C:0.40, G:0.13, T:0.29
Consensus pattern (36 bp):
CCCGTCCCCGTCACCATTTAACATAAACGGTTTTCT
Found at i:7341884 original size:60 final size:60
Alignment explanation
Indices: 7341833--7341946 Score: 160
Period size: 60 Copynumber: 1.9 Consensus size: 60
7341823 CTATGAGTAT
* *
7341833 CATTCTAAATTAGTCCTAAAAC-TTTTGAACATTTC-ATTTTCATCCCCAAACTATGACACA
1 CATTCTAAATTAGTCCCAAAACTTTTTGAACATTCCAATTTT-AT-CCCAAACTATGACACA
* *
7341893 CATTCTAAATTGGTCCCCAAACTTTTTGAACATTCCAATTTTATCCCAAACTAT
1 CATTCTAAATTAGTCCCAAAACTTTTTGAACATTCCAATTTTATCCCAAACTAT
7341947 ATGCATATAC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
60 29 0.60
61 14 0.29
62 5 0.10
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (60 bp):
CATTCTAAATTAGTCCCAAAACTTTTTGAACATTCCAATTTTATCCCAAACTATGACACA
Found at i:7343010 original size:105 final size:105
Alignment explanation
Indices: 7342853--7343046 Score: 225
Period size: 105 Copynumber: 1.8 Consensus size: 105
7342843 GAGGATATCA
* * * * *
7342853 ATACTCAACCCTTGGGTATCGATACTCATCTCGAGTATCGATATTAAATTTAAGC-TCGATGTTT
1 ATACTCAACCCTTGGGTATCGATACTCAACTCAAGTACCAATATTAAATTTAA-CTTCGAAGTTT
*
7342917 CAATAAAT-CTCATGGGTATCGATACCCCTATACGATTATTG
65 CAATAAATAC-CATCGGTATCGATACCCCTATACGATTATTG
* * *
7342958 ATACTC-ACCCTTTGGGTATCGATACTCAACTTAAGTGCCAATA-TAATTTTTAACTTCGAAGTT
1 ATACTCAACCC-TTGGGTATCGATACTCAACTCAAGTACCAATATTAA-ATTTAACTTCGAAGTT
* *
7343021 TGAATAAATACCTTCGGTATCGATAC
64 TCAATAAATACCATCGGTATCGATAC
7343047 TTACACGAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
104 8 0.11
105 65 0.88
106 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (105 bp):
ATACTCAACCCTTGGGTATCGATACTCAACTCAAGTACCAATATTAAATTTAACTTCGAAGTTTC
AATAAATACCATCGGTATCGATACCCCTATACGATTATTG
Found at i:7346335 original size:2 final size:2
Alignment explanation
Indices: 7346328--7346378 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
7346318 AATATTTAAC
*
7346328 AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7346369 AT AT AT AT AT
1 AT AT AT AT AT
7346379 TCATACACGT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7347250 original size:55 final size:55
Alignment explanation
Indices: 7347180--7347576 Score: 428
Period size: 55 Copynumber: 7.2 Consensus size: 55
7347170 GGTCCGCTCC
* * * * * *
7347180 TTCTTTCAAGGAGTATATGACTCTAACAATCTTCGACAATCGGGTCTACTCCCTCA
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCT-A
* * * * *
7347236 -TCTTTCAAGGAGTATAGGACTCGAACAAACTTCGACAAACGGGTCCGCTCCCTA
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
* *
7347290 TTCTTTC-AGAGAGTATAAGTCTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
1 TTCTTTCAAG-GAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
* * * **
7347345 TTCTTT-TAGAGAGTATAGGACTCAAACAATCTTCAACAAATGTGTTTGCTCTATA
1 TTCTTTCAAG-GAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
* * *
7347400 TTCTTTCAAGGAGTATAGGACTCGAACAATCTTCAACAAACATGTCCGCTCCCTA
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
* *
7347455 TTCTTTC-AGAGAGTATAGGACTCAAACAATCTTCAACAAATGTGT-TCGCTCTCTA
1 TTCTTTCAAG-GAGTATAGGACTCAAACAATCTTCAACAAACGTGTCT-GCTCCCTA
** * * *
7347510 TTCTTTCAAGGAGTATAGGACTTGAACAATCTTCGAA-AAATGAGTCTGTTCCACTA
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTC-AACAAACGTGTCTGCTCC-CTA
*
7347566 TTCATTCAAGG
1 TTCTTTCAAGG
7347577 GAGCTCAGAC
Statistics
Matches: 293, Mismatches: 38, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
54 5 0.02
55 268 0.91
56 20 0.07
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (55 bp):
TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCAACAAACGTGTCTGCTCCCTA
Found at i:7347462 original size:165 final size:165
Alignment explanation
Indices: 7347180--7347551 Score: 493
Period size: 165 Copynumber: 2.3 Consensus size: 165
7347170 GGTCCGCTCC
* * * * * * **
7347180 TTCTTTCAAGGAGTATATGACTCTAACAATCTTCG-ACAATCGGGTCTACTCCCTCA-TCTTTCA
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCGAAAAAT-GTGTTTGCTCTAT-ATTCTTTCA
* *
7347243 AGGAGTATAGGACTCGAACAAACTTCGACAAACGGGTCCGCTCCCTATTCTTTCAGAGAGTATAA
64 AGGAGTATAGGACTCGAACAAACTTCAACAAACAGGTCCGCTCCCTATTCTTTCAGAGAGTATAA
*
7347308 GTCTCAAACAATCTTCAACAAACGTG-TCTGCTCCCTA
129 GACTCAAACAATCTTCAACAAACGTGTTC-GCTCCCTA
*
7347345 TTCTTT-TAGAGAGTATAGGACTCAAACAATCTTC-AACAAATGTGTTTGCTCTATATTCTTTCA
1 TTCTTTCAAG-GAGTATAGGACTCAAACAATCTTCGAA-AAATGTGTTTGCTCTATATTCTTTCA
* * *
7347408 AGGAGTATAGGACTCGAACAATCTTCAACAAACATGTCCGCTCCCTATTCTTTCAGAGAGTATAG
64 AGGAGTATAGGACTCGAACAAACTTCAACAAACAGGTCCGCTCCCTATTCTTTCAGAGAGTATAA
* *
7347473 GACTCAAACAATCTTCAACAAATGTGTTCGCTCTCTA
129 GACTCAAACAATCTTCAACAAACGTGTTCGCTCCCTA
**
7347510 TTCTTTCAAGGAGTATAGGACTTGAACAATCTTCGAAAAATG
1 TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCGAAAAATG
7347552 AGTCTGTTCC
Statistics
Matches: 180, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
164 3 0.02
165 168 0.93
166 9 0.05
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (165 bp):
TTCTTTCAAGGAGTATAGGACTCAAACAATCTTCGAAAAATGTGTTTGCTCTATATTCTTTCAAG
GAGTATAGGACTCGAACAAACTTCAACAAACAGGTCCGCTCCCTATTCTTTCAGAGAGTATAAGA
CTCAAACAATCTTCAACAAACGTGTTCGCTCCCTA
Found at i:7352266 original size:2 final size:2
Alignment explanation
Indices: 7352259--7352308 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
7352249 TGAAAGAATA
*
7352259 AT AT AT AT AC AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7352300 AT A- AT AT AT
1 AT AT AT AT AT
7352309 TATGGGAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7357676 original size:2 final size:2
Alignment explanation
Indices: 7357669--7357699 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7357659 AAAATAAATT
7357669 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7357700 CCAAAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7359560 original size:17 final size:16
Alignment explanation
Indices: 7359529--7359562 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7359519 TTTAAAAATA
*
7359529 AATAAATAAATTATTT
1 AATAAAAAAATTATTT
7359545 AATAAAAAATATTATTT
1 AATAAAAAA-ATTATTT
7359562 A
1 A
7359563 CATATCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAAAAAAATTATTT
Found at i:7359816 original size:24 final size:23
Alignment explanation
Indices: 7359789--7359843 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
7359779 CGAAAAGTTT
7359789 AATAACTATACTAAAATATAAAAA
1 AATAACTATACTAAAATA-AAAAA
* * * *
7359813 AATATCTATACTACAATAAATAT
1 AATAACTATACTAAAATAAAAAA
7359836 AATAACTA
1 AATAACTA
7359844 CAAGAAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAACTATACTAAAATAAAAAA
Found at i:7359952 original size:12 final size:12
Alignment explanation
Indices: 7359924--7359965 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
7359914 TACATAAATT
*
7359924 TAAAT-AATAAC
1 TAAATAAATAAG
7359935 TAAAATAAATAAG
1 T-AAATAAATAAG
7359948 TAAATAAATAAG
1 TAAATAAATAAG
7359960 TAAATA
1 TAAATA
7359966 TTAAATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 1 0.04
12 21 0.75
13 6 0.21
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (12 bp):
TAAATAAATAAG
Found at i:7363031 original size:65 final size:65
Alignment explanation
Indices: 7362912--7363127 Score: 192
Period size: 65 Copynumber: 3.3 Consensus size: 65
7362902 TTTTTCAGAG
* * * *
7362912 TGATGCACCGATGCAC-CAATCCATGCATCGATGCAC-CATGA-ATTAAATTG-AACATCGAATG
1 TGATGCATCGATGCACTC-AGCCATGCACCGATGCACTCAGGATATT---TTGAAACATCGAATG
7362973 CATT
62 CATT
* * * *
7362977 TCATGCATCGATGCACTTA-CCATGCACCGATGCACTGAGGAT-TTTATGAAAACATCGAATGTA
1 TGATGCATCGATGCACTCAGCCATGCACCGATGCACTCAGGATATTT-TG-AAACATCGAATGCA
7363040 TT
64 TT
* * * *
7363042 TGATGCATCGATGCACCAGCCAGCCATGCATCGATGCACTCTGGCTATTTTGAAACATCGAATGC
1 TGATGCATCGATGCA-C--TCAGCCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGC
*
7363107 ACT
63 ATT
7363110 TGATGCATCGATGCACTC
1 TGATGCATCGATGCACTC
7363128 TTAGTGCACC
Statistics
Matches: 123, Mismatches: 17, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
62 1 0.01
63 2 0.02
64 15 0.12
65 49 0.40
66 1 0.01
67 1 0.01
68 30 0.24
69 21 0.17
70 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (65 bp):
TGATGCATCGATGCACTCAGCCATGCACCGATGCACTCAGGATATTTTGAAACATCGAATGCATT
Found at i:7363125 original size:17 final size:19
Alignment explanation
Indices: 7363097--7363145 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7363087 TATTTTGAAA
7363097 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
7363115 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
7363134 CACCGATGCACT
1 CATCGATGCACT
7363146 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:7367208 original size:15 final size:15
Alignment explanation
Indices: 7367175--7367217 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
7367165 AAAATAATAT
* *
7367175 TAAAATTAAAACTAA
1 TAAAAATAAAACAAA
7367190 -AAAAATAAAACAAA
1 TAAAAATAAAACAAA
7367204 TAAAAAT-AAACAAA
1 TAAAAATAAAACAAA
7367218 CAAACACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 19 0.76
15 6 0.24
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.16
Consensus pattern (15 bp):
TAAAAATAAAACAAA
Found at i:7370450 original size:23 final size:23
Alignment explanation
Indices: 7370406--7370454 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
7370396 ATAAAGAACC
*
7370406 AAAATAAACTTAAATATACCATT
1 AAAATAAACTTAAACATACCATT
*
7370429 AAAATAAAGTTAAAACAT-CCATT
1 AAAATAAACTT-AAACATACCATT
7370452 AAA
1 AAA
7370455 CCAACACCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTTAAACATACCATT
Found at i:7376148 original size:44 final size:45
Alignment explanation
Indices: 7376098--7376192 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 45
7376088 GTGCTTAATG
* *
7376098 CATCGATACACTTAACAG-TGCACCGATGCATC-CCTTTGAATGT-T
1 CATCGATACA-TCAACAGATGCACCGATGCA-CGCCCTTGAATGTGT
* *
7376142 CATCGATATATCAACTGATGCACCGATGCACGCCCTTGAATGTGT
1 CATCGATACATCAACAGATGCACCGATGCACGCCCTTGAATGTGT
7376187 -ATCGAT
1 CATCGAT
7376193 GCACAAGAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
43 6 0.14
44 37 0.84
45 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (45 bp):
CATCGATACATCAACAGATGCACCGATGCACGCCCTTGAATGTGT
Found at i:7377782 original size:21 final size:21
Alignment explanation
Indices: 7377740--7377783 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
7377730 ACTCTGGGAG
* *
7377740 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTACTC
* *
7377761 CTAGCTCCTCTCGTGCTACTC
1 CTAGCTCCTCACGAGCTACTC
7377782 CT
1 CT
7377784 CCTCCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.11, C:0.41, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTACTC
Found at i:7378968 original size:65 final size:65
Alignment explanation
Indices: 7378899--7379060 Score: 197
Period size: 65 Copynumber: 2.5 Consensus size: 65
7378889 AATTAAATTG
* * * *
7378899 AACATCGAATTCATTTCATGCATCGATGCACTTA-CCATGAA-CTGATGCACTGAGGAT-TTTAT
1 AACATCGAATGCATTTGATGCATCGATGCACTCAGCCATGAATC-GATGCACTCAGGATATTT-T
7378961 GAA
64 G-A
* * *
7378964 AACATCGAATGCATTTGATGCATCGATGCAC-CAGCCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCACTCAGCCATGAATCGATGCACTCAGGATATTTTGA
*
7379028 AACATCGAATGCACTTGATGCATCGATGCACTC
1 AACATCGAATGCATTTGATGCATCGATGCACTC
7379061 TTAGTGCACC
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
64 32 0.38
65 49 0.58
66 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (65 bp):
AACATCGAATGCATTTGATGCATCGATGCACTCAGCCATGAATCGATGCACTCAGGATATTTTGA
Found at i:7379058 original size:17 final size:19
Alignment explanation
Indices: 7379030--7379078 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
7379020 TATTTTGAAA
7379030 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
7379048 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
7379067 CACCGATGCACT
1 CATCGATGCACT
7379079 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:7380660 original size:20 final size:20
Alignment explanation
Indices: 7380635--7380675 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7380625 ACTCTTTCTC
*
7380635 TTAATTCAATCATTGTATTT
1 TTAATTCAATCATTGAATTT
*
7380655 TTAATTTAATCATTGAATTT
1 TTAATTCAATCATTGAATTT
7380675 T
1 T
7380676 ATACATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
TTAATTCAATCATTGAATTT
Found at i:7385124 original size:33 final size:32
Alignment explanation
Indices: 7385077--7385155 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 32
7385067 AGGATGTTAC
* *
7385077 CGCATAATCCCAGAAGAATATAGAAGAAGTTGA
1 CGCA-AATCCCAGAAGAAGAAAGAAGAAGTTGA
*
7385110 CGCAGAATCCCAGAAGAAGAAAGAAGAATTTGA
1 CGCA-AATCCCAGAAGAAGAAAGAAGAAGTTGA
7385143 CGCAAGATCCCAG
1 CGCAA-ATCCCAG
7385156 TGGCAAAAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 1 0.02
33 40 0.98
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (32 bp):
CGCAAATCCCAGAAGAAGAAAGAAGAAGTTGA
Found at i:7386407 original size:10 final size:10
Alignment explanation
Indices: 7386392--7386427 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
7386382 TCAAACCAAT
7386392 TCCTCTCAAA
1 TCCTCTCAAA
*
7386402 TCCTCTCTAA
1 TCCTCTCAAA
*
7386412 TTCTCTCAAA
1 TCCTCTCAAA
7386422 TCCTCT
1 TCCTCT
7386428 AAAAAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.22, C:0.39, G:0.00, T:0.39
Consensus pattern (10 bp):
TCCTCTCAAA
Found at i:7386429 original size:18 final size:21
Alignment explanation
Indices: 7386389--7386427 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
7386379 TCATCAAACC
7386389 AATTCCTCTCAAATCCTCTCT
1 AATTCCTCTCAAATCCTCTCT
7386410 AATT-CTCTCAAATCCTCT
1 AATTCCTCTCAAATCCTCT
7386428 AAAAAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (21 bp):
AATTCCTCTCAAATCCTCTCT
Found at i:7386493 original size:12 final size:12
Alignment explanation
Indices: 7386471--7386549 Score: 56
Period size: 12 Copynumber: 6.6 Consensus size: 12
7386461 AGGTATATTT
*
7386471 TATTCTATTTAA
1 TATTTTATTTAA
*
7386483 TATTTTGTTT-A
1 TATTTTATTTAA
7386494 TATTTTATTTAA
1 TATTTTATTTAA
* *
7386506 TTATTGTA-TTATT
1 -TATTTTATTTA-A
* *
7386519 TAATTT-TTTAG
1 TATTTTATTTAA
7386530 TATTTTATTTAA
1 TATTTTATTTAA
7386542 TTATTTTA
1 -TATTTTA
7386550 ATTTTTTACA
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
11 15 0.29
12 23 0.45
13 13 0.25
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (12 bp):
TATTTTATTTAA
Found at i:7386517 original size:16 final size:18
Alignment explanation
Indices: 7386497--7386546 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 18
7386487 TTGTTTATAT
7386497 TTTATTTAATTATT-GTA
1 TTTATTTAATTATTAGTA
*
7386514 -TTATTTAATTTTTTAGTA
1 TTTATTTAA-TTATTAGTA
7386532 TTTTATTTAATTATT
1 -TTTATTTAATTATT
7386547 TTAATTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 8 0.30
17 4 0.15
18 3 0.11
19 4 0.15
20 8 0.30
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTATTTAATTATTAGTA
Found at i:7386517 original size:23 final size:24
Alignment explanation
Indices: 7386466--7386517 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
7386456 TTATAAGGTA
* *
7386466 TATTTTATTCTATTTAATATTTTG
1 TATTATATTCTATTTAATATATTG
*
7386490 T-TTATATTTTATTTAAT-TATTG
1 TATTATATTCTATTTAATATATTG
7386512 TATTAT
1 TATTAT
7386518 TTAATTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
TATTATATTCTATTTAATATATTG
Found at i:7386537 original size:20 final size:20
Alignment explanation
Indices: 7386490--7386549 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
7386480 TAATATTTTG
7386490 TTTA-TATTTTATTTAA-TT
1 TTTAGTATTTTATTTAATTT
*
7386508 ATT-GTA--TTATTTAATTT
1 TTTAGTATTTTATTTAATTT
7386525 TTTAGTATTTTATTTAATTAT
1 TTTAGTATTTTATTTAATT-T
7386546 TTTA
1 TTTA
7386550 ATTTTTTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 8 0.24
17 4 0.12
18 7 0.21
20 10 0.29
21 5 0.15
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTAGTATTTTATTTAATTT
Found at i:7386555 original size:20 final size:20
Alignment explanation
Indices: 7386514--7386557 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
7386504 AATTATTGTA
*
7386514 TTATTTAATTTTTTAGTATT
1 TTATTTAATTTTTTAATATT
*
7386534 TTATTTAATTATTTTAATTTT
1 TTATTTAATT-TTTTAATATT
7386555 TTA
1 TTA
7386558 CAGTTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
TTATTTAATTTTTTAATATT
Found at i:7386711 original size:34 final size:34
Alignment explanation
Indices: 7386658--7386734 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 34
7386648 TTTAATTTAA
* * *
7386658 ATTATTA-GTAATAATTTATTTATT-TAATTTTTT
1 ATTATTATTTAATAAATTATTTATTGTAA-TTATT
*
7386691 ATTATTATTTAATAAATTATTTTTTGTAATTATT
1 ATTATTATTTAATAAATTATTTATTGTAATTATT
7386725 ATTATT-TTTA
1 ATTATTATTTA
7386735 GGAGAGCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 11 0.29
34 24 0.63
35 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.64
Consensus pattern (34 bp):
ATTATTATTTAATAAATTATTTATTGTAATTATT
Found at i:7392383 original size:19 final size:20
Alignment explanation
Indices: 7392350--7392387 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7392340 AAAATAATCA
*
7392350 TATATAATTATAAAAAATAT
1 TATATAATTAAAAAAAATAT
7392370 TATAT-ATTAAAAAAAATA
1 TATATAATTAAAAAAAATA
7392388 CCTTACAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATATAATTAAAAAAAATAT
Found at i:7396845 original size:15 final size:16
Alignment explanation
Indices: 7396825--7396854 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7396815 TAAAACCACA
7396825 AAAATA-TATAAATGC
1 AAAATAGTATAAATGC
7396840 AAAATAGTATAAATG
1 AAAATAGTATAAATG
7396855 GGGCATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (16 bp):
AAAATAGTATAAATGC
Found at i:7397970 original size:3 final size:3
Alignment explanation
Indices: 7397951--7398013 Score: 101
Period size: 3 Copynumber: 21.0 Consensus size: 3
7397941 TAAGGGCCTG
*
7397951 TAA TAA -AA AAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7397996 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
7398014 GAAATGGGCA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
2 2 0.04
3 52 0.91
4 3 0.05
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:7398457 original size:42 final size:41
Alignment explanation
Indices: 7398362--7398461 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 41
7398352 GGTCTTATAG
* *
7398362 ATGGCCCGAAGGACTTATCATCTTGCTCGAAAGGCTGTCAA
1 ATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTGTCAA
* * * * **
7398403 ATGACCCAAAGGATTTAATCATCATGCTCGAAAGACTTTCTT
1 ATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGACTGTCAA
*
7398445 ATGGCTCGAAGGACTTA
1 ATGGCCCGAAGGACTTA
7398462 CAGTGTTGGA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 14 0.30
42 32 0.70
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (41 bp):
ATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTGTCAA
Found at i:7398736 original size:263 final size:257
Alignment explanation
Indices: 7398134--7398834 Score: 894
Period size: 263 Copynumber: 2.7 Consensus size: 257
7398124 GTCTTAAGTG
* * * * *
7398134 AGACTGACAGATGACCCAAAGGATCTAATCATCATTCTTGAAAGACTTACTGATGGCCCGAAGGA
1 AGACTAACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGA
** * *
7398199 CTTATCAATTTCAAAAATAGTTTACTAGGTAAGAAACTTTGGAACTCGCTTTCTTTCTTTTCAAA
66 CTTA-CAATTT-GGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAA
* * * *
7398264 AATTTCATTTTTTGAAAATACTAAATGATAAACTTTCAAAATCACTTTCTCATTTTTCAAATTAT
129 ATTTTCATTTTTTGAAAATACTAAATGAGAAACTTTAAAAATCACTTTCTAATTTTTCAAATTAT
* * ** * *
7398329 CATATGAAAGCATCTTGCCCAAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAA
194 CATATGAAAGCATATTGCCCAAAGATCTTATAGATGGCCCGAAAAACTTATCATCTTGCCCAAA
* ** * * *
7398393 AGGCTGTCAAATGACCCAAAGGATTTAATCATCATGCTCGAAAGACTTTCTTATGG-CTCGAAGG
1 AGACTAACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCT-GAAGG
* *
7398457 ACTTACAGTGTTGGAAATAGTTTACTAGGTAAGATAAGAAACTTTGGAAATCACTTTCTTACTTT
65 ACTTACAAT-TTGGAAATAGTTTACTA-G---G-TAAGAAACTTTGGAAATCGCTTTCTTACTTT
* * * *
7398522 TCAAAATTTTCATTTTCTGAAAATACTATATGAGAAAATTTAAAAATCGCTTTCTAATTTTTCAA
124 TCAAAATTTTCATTTTTTGAAAATACTAAATGAGAAACTTTAAAAATCACTTTCTAATTTTTCAA
*
7398587 ATTAT-A-A-GAAAGCATATTGCCCGAAGATCTTATAGATGGCCCTGAAAAAACTTATCATCTTG
189 ATTATCATATGAAAGCATATTGCCCAAAGATCTTATAGATGGCCC-G-AAAAACTTATCATCTTG
7398649 CCCAAA
252 CCCAAA
* * *
7398655 ATACTAACAGATGACCCGAAA-GATTTAATCATCATGCTCGAAAGACTTAATGATGGCCTGAATG
1 AGACTAACAGATGACCC-AAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGG
7398719 ACTTACCAATATTGGAAATAGTTTACTAGGTAAGAAACTTTGGATAA-CGCTTTCTTACTTTTCA
65 ACTTA-CAAT-TTGGAAATAGTTTACTAGGTAAGAAACTTTGGA-AATCGCTTTCTTACTTTTCA
7398783 AAATTTTCATTTTTTGAAAATACTAAATGAGAAACTTTGAAAAA-CACTTTCT
127 AAATTTTCATTTTTTGAAAATACTAAATGAGAAACTTT-AAAAATCACTTTCT
7398835 CTTTTTTTAA
Statistics
Matches: 382, Mismatches: 46, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
258 89 0.23
259 69 0.18
260 32 0.08
261 2 0.01
262 75 0.20
263 115 0.30
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (257 bp):
AGACTAACAGATGACCCAAAGGATTTAATCATCATGCTCGAAAGACTTACTGATGGCCTGAAGGA
CTTACAATTTGGAAATAGTTTACTAGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAT
TTTCATTTTTTGAAAATACTAAATGAGAAACTTTAAAAATCACTTTCTAATTTTTCAAATTATCA
TATGAAAGCATATTGCCCAAAGATCTTATAGATGGCCCGAAAAACTTATCATCTTGCCCAAA
Found at i:7400955 original size:14 final size:14
Alignment explanation
Indices: 7400936--7400985 Score: 77
Period size: 14 Copynumber: 3.6 Consensus size: 14
7400926 TCTTTCTTAA
7400936 TTTTCTTTTTTCTC
1 TTTTCTTTTTTCTC
7400950 TTTTC-TTTTTCTC
1 TTTTCTTTTTTCTC
7400963 TTTTCTTTTCTT-TC
1 TTTTCTTTT-TTCTC
7400977 TTTTCTTTT
1 TTTTCTTTT
7400986 ATTTTTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.38
14 19 0.56
15 2 0.06
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTTTTTCTC
Found at i:7400955 original size:27 final size:27
Alignment explanation
Indices: 7400923--7400985 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
7400913 GCTTAATCTA
7400923 TTTTCTTTCTT-AATTTTCTTTT-TTCTC
1 TTTTCTTT-TTCAATTTTCTTTTCTT-TC
**
7400950 TTTTCTTTTTCTCTTTTCTTTTCTTTC
1 TTTTCTTTTTCAATTTTCTTTTCTTTC
7400977 TTTTCTTTT
1 TTTTCTTTT
7400986 ATTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 28 0.88
28 2 0.06
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (27 bp):
TTTTCTTTTTCAATTTTCTTTTCTTTC
Found at i:7400956 original size:5 final size:5
Alignment explanation
Indices: 7400936--7400994 Score: 56
Period size: 5 Copynumber: 12.8 Consensus size: 5
7400926 TCTTTCTTAA
* *
7400936 TTTTC TTTT- TTCTC TTTTC -TTT- TTCTC TTTTC TTTTC -TTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
*
7400982 TTTTA TTTT- TTTT
1 TTTTC TTTTC TTTT
7400995 TGAATAAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
4 16 0.36
5 29 0.64
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:7400964 original size:22 final size:22
Alignment explanation
Indices: 7400926--7400980 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7400916 TAATCTATTT
7400926 TCTTTCTTAATTT-TCTTTT-TTC
1 TCTTTCTT--TTTCTCTTTTCTTC
*
7400948 TCTTTTCTTTTTCTCTTTTCTTT
1 TC-TTTCTTTTTCTCTTTTCTTC
7400971 TCTTTCTTTT
1 TCTTTCTTTT
7400981 CTTTTATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 10 0.34
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (22 bp):
TCTTTCTTTTTCTCTTTTCTTC
Found at i:7403405 original size:37 final size:36
Alignment explanation
Indices: 7403361--7403708 Score: 346
Period size: 36 Copynumber: 9.8 Consensus size: 36
7403351 TTTTACATAT
* *
7403361 ATATATATAGTATATAG-TTTGAAAACATTTTTAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTGAAA
7403396 ATGTATATATAATATATAGTTTTGAAAACATGTTTGAAAA
1 A--TATATATAATATATAGTTTTGAAAACAT-TTTG-AAA
* * *
7403436 CATTTATATATTATATAGTTTTCAAAACATTTTGAAA
1 -ATATATATAATATATAGTTTTGAAAACATTTTGAAA
*
7403473 AT-TAATATAATATATAGTTTTCAAAACATTTTGAAA
1 ATAT-ATATAATATATAGTTTTGAAAACATTTTGAAA
* * *
7403509 ATATATATATAGTTTTTA-TTTT-TAAAC-TTTTGAAA
1 ATATATATA-A-TATATAGTTTTGAAAACATTTTGAAA
*
7403544 ATA-A-ATAATATATAGTTTTTAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACA-TTTTGAAA
* *
7403579 ATATATATATTATATAGTTTTTAAAACATTTTGAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTGAAA
* *
7403615 A-ATATAT-ATA-GT--TTTTAAAAACATTTTGAAAA
1 ATATATATAATATATAGTTTTGAAAACATTTTG-AAA
* *
7403647 CATATATATATTATATAGTTTTGAAATCATTTTG-AA
1 -ATATATATAATATATAGTTTTGAAAACATTTTGAAA
*
7403683 A-ACATATAATATATAGTTTTGAAAAC
1 ATATATATAATATATAGTTTTGAAAAC
7403709 TATACAATTT
Statistics
Matches: 267, Mismatches: 23, Indels: 47
0.79 0.07 0.14
Matches are distributed among these distances:
31 19 0.07
32 8 0.03
33 9 0.03
34 31 0.12
35 33 0.12
36 57 0.21
37 45 0.17
38 33 0.12
39 28 0.10
40 3 0.01
41 1 0.00
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (36 bp):
ATATATATAATATATAGTTTTGAAAACATTTTGAAA
Found at i:7403569 original size:69 final size:71
Alignment explanation
Indices: 7403361--7403708 Score: 390
Period size: 69 Copynumber: 4.8 Consensus size: 71
7403351 TTTTACATAT
* ** *
7403361 ATATATATAGTATATAGTTTGAAAACATTTTTAAAATGTATATATAATATATAGTTTTGAAAACA
1 ATATATATATTATATAGTTTTTAAACATTTTGAAAA--TA-A-ATAATATATAGTTTTGAAAACA
7403426 TGTTTGAAAAC
62 T-TTTGAAAAC
* * *
7403437 ATTTATATATTATATAGTTTTCAAAACATTTTGAAAATTAATATAATATATAGTTTTCAAAACAT
1 ATATATATATTATATAGTTTT-TAAACATTTTGAAAA-TAA-ATAATATATAGTTTTGAAAACAT
*
7403502 TTTGAAAAT
63 TTTGAAAAC
* *
7403511 ATATATATAGTT-TTTA-TTTTTAAAC-TTTTGAAAATAAATAATATATAGTTTTTAAAACATTT
1 ATATATATA-TTATATAGTTTTTAAACATTTTGAAAATAAATAATATATAGTTTTGAAAACA-TT
7403573 TTG-AAA-
64 TTGAAAAC
*
7403579 ATATATATATTATATAGTTTTTAAAACATTTTG--AA-AAAT-ATATATAGTTTTTAAAAACATT
1 ATATATATATTATATAGTTTTT-AAACATTTTGAAAATAAATAATATATAG-TTTTGAAAACATT
7403640 TTGAAAAC
64 TTGAAAAC
* * *
7403648 ATATATATATTATATAGTTTTGAAATCATTTTGAAAACATATAATATATAGTTTTGAAAAC
1 ATATATATATTATATAGTTTTTAAA-CATTTTGAAAATAAATAATATATAGTTTTGAAAAC
7403709 TATACAATTT
Statistics
Matches: 241, Mismatches: 16, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
67 15 0.06
68 32 0.13
69 59 0.24
70 12 0.05
71 16 0.07
72 16 0.07
73 12 0.05
74 19 0.08
75 26 0.11
76 20 0.08
77 14 0.06
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (71 bp):
ATATATATATTATATAGTTTTTAAACATTTTGAAAATAAATAATATATAGTTTTGAAAACATTTT
GAAAAC
Found at i:7405050 original size:25 final size:26
Alignment explanation
Indices: 7405022--7405081 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 26
7405012 ATATTTTTGT
* *
7405022 TTATTTTTTATTTTAGTT-TTTTCTA
1 TTATTTTTTATTTAAGTTATTTTATA
*
7405047 TTA-TTTTTATTTAATTTATTTTATA
1 TTATTTTTTATTTAAGTTATTTTATA
7405072 TATATTTTTT
1 T-TATTTTTT
7405082 CTATTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 12 0.41
25 10 0.34
26 2 0.07
27 5 0.17
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (26 bp):
TTATTTTTTATTTAAGTTATTTTATA
Found at i:7405220 original size:23 final size:23
Alignment explanation
Indices: 7405194--7405259 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 23
7405184 TTTGTTTAAT
7405194 TTTTATTATTTTTTTATTTTTAC
1 TTTTATTATTTTTTTATTTTTAC
* *
7405217 TTTT-TGTA-TTTTGTATTTTTCC
1 TTTTAT-TATTTTTTTATTTTTAC
*
7405239 TTTGATTTATTTTATTTATTT
1 TTTTA-TTATTTT-TTTATTT
7405260 AATTTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
22 16 0.47
23 8 0.24
24 4 0.12
25 6 0.18
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.76
Consensus pattern (23 bp):
TTTTATTATTTTTTTATTTTTAC
Found at i:7405410 original size:6 final size:6
Alignment explanation
Indices: 7405394--7405448 Score: 83
Period size: 6 Copynumber: 8.7 Consensus size: 6
7405384 AATCGAATAT
7405394 TTTTAAA TTTTAA TTTTAA TTTTAAA TTTTAA TTTTAA TTTTAA TTTTAAA
1 TTTT-AA TTTTAA TTTTAA TTTT-AA TTTTAA TTTTAA TTTTAA TTTT-AA
7405445 TTTT
1 TTTT
7405449 TGCAACAAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 30 0.65
7 16 0.35
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTTAA
Found at i:7405418 original size:19 final size:19
Alignment explanation
Indices: 7405394--7405448 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
7405384 AATCGAATAT
7405394 TTTTAAATTTTAATTTTAA
1 TTTTAAATTTTAATTTTAA
7405413 TTTTAAATTTTAATTTTAA
1 TTTTAAATTTTAATTTTAA
7405432 TTTT-AATTTTAAATTTT
1 TTTTAAATTTT-AATTTT
7405449 TGCAACAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.17
19 29 0.83
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAAATTTTAATTTTAA
Found at i:7405432 original size:25 final size:26
Alignment explanation
Indices: 7405395--7405448 Score: 101
Period size: 25 Copynumber: 2.1 Consensus size: 26
7405385 ATCGAATATT
7405395 TTTAAATTTTAATTTTAATTTTAAAT
1 TTTAAATTTTAATTTTAATTTTAAAT
7405421 TTT-AATTTTAATTTTAATTTTAAAT
1 TTTAAATTTTAATTTTAATTTTAAAT
7405446 TTT
1 TTT
7405449 TGCAACAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.89
26 3 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (26 bp):
TTTAAATTTTAATTTTAATTTTAAAT
Found at i:7408191 original size:95 final size:96
Alignment explanation
Indices: 7407997--7408242 Score: 254
Period size: 95 Copynumber: 2.7 Consensus size: 96
7407987 TATAATATTA
* **
7407997 TATATATATACAAAAAAGCTTGTATTGTCCCTCTAGAGCAATTGGTTAAACGCCTTGGCTTTATG
1 TATATATATACAAAAAAGCTTGTACTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATG
* * *
7408062 GATAATATTCAACTAGCATGATAAAGGTAAT
66 GATAAGATTCAACTAACATGATAAAGATAAT
* *
7408093 TATAT-TATACAATAAAGCTTG-AGCTGTCCTTCTA-AGGCAATTGGTTAAACGCCCCGGCTTTA
1 TATATATATACAAAAAAGCTTGTA-CTGTCCCTCTAGA-GCAATTGGTTAAACGCCCCGGCTTTA
* * *
7408155 TGGATAAGATTCAGCTAACCTGATAAAGAT-GT
64 TGGATAAGATTCAACTAACATGATAAAGATAAT
*
7408187 T-TATATAT-----TAA----GT--TGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATG
1 TATATATATACAAAAAAGCTTGTACTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATG
7408240 GAT
66 GAT
7408243 CCAGCTAGCC
Statistics
Matches: 132, Mismatches: 13, Indels: 23
0.79 0.08 0.14
Matches are distributed among these distances:
83 40 0.30
84 1 0.01
85 1 0.01
89 2 0.02
93 3 0.02
94 7 0.05
95 73 0.55
96 5 0.04
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (96 bp):
TATATATATACAAAAAAGCTTGTACTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATG
GATAAGATTCAACTAACATGATAAAGATAAT
Found at i:7409488 original size:84 final size:84
Alignment explanation
Indices: 7409360--7409863 Score: 509
Period size: 84 Copynumber: 6.0 Consensus size: 84
7409350 GGGCTATCTG
* * *
7409360 CCAAAGACCCTCGAGTTTGATTACACTCAGCTTCGAGGGCACATCGTTTACAGCATAACTCAAGG
1 CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGG
* *
7409425 CTAGAAGGGTTAACTTTCA
66 CTAGAAGGGTTATCTGTCA
* * * * * * * *
7409444 CCAAAGGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAACATATCTTAAG
1 CCAAA-GACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAG
* * *
7409508 TCGAGAAGGGCTATCTG---
65 GCTAGAAGGGTTATCTGTCA
* * *
7409525 CCAAAGATCC-TCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAACATAGCTCAAG
1 CCAAAGA-CCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAG
*
7409589 GCTAGAAGGGTTATCTGTGA
65 GCTAGAAGGGTTATCTGTCA
* * * * * * *
7409609 CCAAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCATATCATTTTA-TGCATAACTTAA
1 CC-AAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCA-TTTACAGCATAACTCAA
* * *
7409672 GTCAAGAAGGGTTATCTGCCAA
64 GGCTAGAAGGGTTATCTGTC-A
* * *
7409694 CCAAAAACCTTCGAGTTCGATTACACTCAGCTTCGAGGGAACATCATTTATAGCATAACTCAAGG
1 CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGG
*
7409759 CTAGAAAGGTTATCTGTCA
66 CTAGAAGGGTTATCTGTCA
* * * * * * *
7409778 CCAAAGACCTTCGAGTTCAATTACACACAGCTTCGAGAGCACACCAAATCTACAGAATAGCTCAA
1 CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATC--ATTTACAGCATAACTCAA
* *
7409843 GGCAAGAAGGGCTATCTGTCA
64 GGCTAGAAGGGTTATCTGTCA
7409864 ATAAATTGTT
Statistics
Matches: 339, Mismatches: 67, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
80 20 0.06
81 48 0.14
84 151 0.45
85 88 0.26
86 32 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (84 bp):
CCAAAGACCTTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGG
CTAGAAGGGTTATCTGTCA
Found at i:7409596 original size:165 final size:164
Alignment explanation
Indices: 7409324--7409795 Score: 685
Period size: 165 Copynumber: 2.8 Consensus size: 164
7409314 TAAAGATAAT
* * *
7409324 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTTGATTACACTCA
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGAACCTCGAGTTCGATTACACTCA
* * *
7409389 GCTTCGAGGGCACATCGTTTACAGCATAACTCAAGGCTAGAAGGGTTAACTTTCACCAAAGGACC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAA-GACC
7409454 TTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
130 TTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
7409489 ATTTGCAACATATCTTAAGTCGAGAAGGGCTATCTGCCAAAGATCCTCAAGTTCGATTACACTCA
1 ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGAACCTCGAGTTCGATTACACTCA
* * *
7409554 GCTTCGAGGGCACATCATTTACAACATAGCTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACC
66 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACC-AAAGACC
*
7409619 TTCGAGTTCGACTACGCTCAGCTCCAAGGCATATC
130 TTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * * *
7409654 ATTT-TATGCATAACTTAAGTCAAGAAGGGTTATCTGCCAACCAAAAACCTTCGAGTTCGATTAC
1 ATTTGCA-GCATAACTTAAGTCGAGAAGGGCTATCTGCC-A--AAGAACC-TCGAGTTCGATTAC
* * *
7409718 ACTCAGCTTCGAGGGAACATCATTTATAGCATAACTCAAGGCTAGAAAGGTTATCTGTCACCAAA
61 ACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAA
7409783 GACCTTCGAGTTC
126 GACCTTCGAGTTC
7409796 AATTACACAC
Statistics
Matches: 275, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
164 1 0.00
165 180 0.65
166 4 0.01
168 21 0.08
169 69 0.25
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
ATTTGCAGCATAACTTAAGTCGAGAAGGGCTATCTGCCAAAGAACCTCGAGTTCGATTACACTCA
GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCACCAAAGACCT
TCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
Found at i:7410263 original size:2 final size:2
Alignment explanation
Indices: 7410258--7410288 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7410248 TTTTTTTTAC
7410258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7410289 GTTTGAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7410326 original size:37 final size:37
Alignment explanation
Indices: 7410272--7410630 Score: 377
Period size: 36 Copynumber: 9.9 Consensus size: 37
7410262 ATATATATAT
*
7410272 ATATATATATATATATAG-TTTGAAAACATTTTTAAAA
1 ATATATATA-ATATATAGTTTTTAAAACATTTTTAAAA
* *
7410309 AGTATATATAATATATAGTTTTGAAAACATGTTTGAAAA
1 A-TATATATAATATATAGTTTTTAAAACAT-TTTTAAAA
* * *
7410348 CATTTATATATTATATAGTTTTTAAAACATTTTGAAAA
1 -ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
* *
7410386 ATA-ATATAATATATAGTTTTCAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
* *
7410422 ATATATATATTATATAGTTTTTAAAACA-TTTTGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
* *
7410458 ATAAATATAATATATAGTTTTTAAAACATTTTTGAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
* *
7410495 ATATATATATTATATAGTTTTTAAAACA-TTTT---G
1 ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
*
7410528 A-A-A-AT-ATATATAGTTTTTAAAAACATTTTGAAAA
1 ATATATATAATATATAGTTTTT-AAAACATTTTTAAAA
* * * *
7410562 CATATATATATTATATAGTTTTGAAATCA-TTTT-GAA
1 -ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
* *
7410598 A-ACATATAATATATAGTTTTAAAAACATTTTTA
1 ATATATATAATATATAGTTTTTAAAACATTTTTA
7410631 GAAACTATGC
Statistics
Matches: 276, Mismatches: 28, Indels: 37
0.81 0.08 0.11
Matches are distributed among these distances:
29 12 0.04
30 8 0.03
31 4 0.01
32 1 0.00
33 1 0.00
34 22 0.08
35 6 0.02
36 73 0.26
37 71 0.26
38 34 0.12
39 43 0.16
40 1 0.00
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTTAAAACATTTTTAAAA
Found at i:7410357 original size:73 final size:73
Alignment explanation
Indices: 7410276--7410634 Score: 416
Period size: 73 Copynumber: 4.9 Consensus size: 73
7410266 ATATATATAT
* * *
7410276 ATATATATATATAG-TTTGAAAACATTTTTAAAAAGTATATATAATATATAGTTTTGAAAACATG
1 ATATAT-TATATAGTTTTTAAAACA-TTTT-AAAA-TATATATAATATATAGTTTTAAAAACATT
*
7410340 TTTGAAAACATTT
62 TTTGAAAACA-TA
*
7410353 ATATATTATATAGTTTTTAAAACATTTTGAAAA-ATAATATAATATATAGTTTTCAAAACATTTT
1 ATATATTATATAGTTTTTAAAACATTTT-AAAATAT-ATATAATATATAGTTTTAAAAACATTTT
*
7410417 TGAAAATAT-
64 TGAAAACATA
* *
7410426 ATATATTATATAGTTTTTAAAACATTTTGAAAATAAATATAATATATAGTTTTTAAAACATTTTT
1 ATATATTATATAGTTTTTAAAACATTTT-AAAATATATATAATATATAGTTTTAAAAACATTTTT
*
7410491 GAAAATAT-
65 GAAAACATA
* *
7410499 ATATATTATATAGTTTTTAAAACATTTTGAAA-ATATAT-ATA-GT--TTTTAAAAACA-TTTTG
1 ATATATTATATAGTTTTTAAAACATTTTAAAATATATATAATATATAGTTTTAAAAACATTTTTG
7410558 AAAACATA
66 AAAACATA
* * * *
7410566 TATATATTATATAGTTTTGAAATCATTTTGAAA-ACATATAATATATAGTTTTAAAAACATTTTT
1 -ATATATTATATAGTTTTTAAAACATTTTAAAATATATATAATATATAGTTTTAAAAACATTTTT
7410630 AGAAA
65 -GAAA
7410635 CTATGCAATT
Statistics
Matches: 255, Mismatches: 16, Indels: 25
0.86 0.05 0.08
Matches are distributed among these distances:
66 11 0.04
67 10 0.04
68 35 0.14
69 4 0.02
70 4 0.02
71 5 0.02
72 14 0.05
73 101 0.40
74 8 0.03
75 33 0.13
76 15 0.06
77 15 0.06
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (73 bp):
ATATATTATATAGTTTTTAAAACATTTTAAAATATATATAATATATAGTTTTAAAAACATTTTTG
AAAACATA
Found at i:7410400 original size:36 final size:35
Alignment explanation
Indices: 7410276--7410628 Score: 371
Period size: 37 Copynumber: 9.8 Consensus size: 35
7410266 ATATATATAT
* *
7410276 ATATATATATATAG-TTTGAAAACATTTTTAAAAAGTA
1 ATATA-ATATATAGTTTTTAAAACA-TTTTGAAAA-TA
* *
7410313 TATATAATATATAGTTTTGAAAACATGTTTGAAAACATTT
1 -ATATAATATATAGTTTTTAAAACAT-TTTG-AAA-A-TA
*
7410353 ATATATTATATAGTTTTTAAAACATTTTGAAAAATA
1 ATATAATATATAGTTTTTAAAACATTTTG-AAAATA
*
7410389 ATATAATATATAGTTTTCAAAACATTTTTGAAAATA
1 ATATAATATATAGTTTTTAAAACA-TTTTGAAAATA
*
7410425 TATATATTATATAGTTTTTAAAACATTTTGAAAATAA
1 -ATATAATATATAGTTTTTAAAACATTTTGAAAAT-A
7410462 ATATAATATATAGTTTTTAAAACATTTTTGAAAATA
1 ATATAATATATAGTTTTTAAAACA-TTTTGAAAATA
*
7410498 TATATATTATATAGTTTTTAAAACATTTTG---A-A
1 -ATATAATATATAGTTTTTAAAACATTTTGAAAATA
7410530 A-AT-ATATATAGTTTTTAAAAACATTTTGAAAACATA
1 ATATAATATATAGTTTTT-AAAACATTTTG-AAA-ATA
* * * *
7410566 TATATATTATATAGTTTTGAAATCATTTTGAAAA-C
1 -ATATAATATATAGTTTTTAAAACATTTTGAAAATA
*
7410601 ATATAATATATAGTTTTAAAAACATTTT
1 ATATAATATATAGTTTTTAAAACATTTT
7410629 TAGAAACTAT
Statistics
Matches: 276, Mismatches: 20, Indels: 42
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.04
30 13 0.05
31 1 0.00
32 1 0.00
33 1 0.00
34 25 0.09
35 1 0.00
36 70 0.25
37 75 0.27
38 38 0.14
39 37 0.13
40 2 0.01
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.44
Consensus pattern (35 bp):
ATATAATATATAGTTTTTAAAACATTTTGAAAATA
Found at i:7410552 original size:30 final size:29
Alignment explanation
Indices: 7410505--7410569 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 29
7410495 ATATATATAT
*
7410505 TATATAGTTTTTAAAACATTTTGAAAATA
1 TATATAGTTTTTAAAACATTTTGAAAACA
7410534 TATATAGTTTTTAAAAACATTTTGAAAACA
1 TATATAGTTTTT-AAAACATTTTGAAAACA
7410564 TATATA
1 TATATA
7410570 TATTATATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 12 0.35
30 22 0.65
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (29 bp):
TATATAGTTTTTAAAACATTTTGAAAACA
Found at i:7411918 original size:34 final size:36
Alignment explanation
Indices: 7411880--7411958 Score: 94
Period size: 34 Copynumber: 2.2 Consensus size: 36
7411870 ATTGCTATTA
*
7411880 TTATTATATTTTTTCC-CTATTTCAT-TTTTTTCCT
1 TTATTATATTTTTTCCTCTATTTAATATTTTTTCCT
*
7411914 TTATTA-A-TTTTTCCTTTATTTAATATTTTTTCCT
1 TTATTATATTTTTTCCTCTATTTAATATTTTTTCCT
7411948 TTGATTTATAT
1 TT-A-TTATAT
7411959 ACATATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
32 7 0.19
33 8 0.22
34 17 0.46
35 1 0.03
36 3 0.08
37 1 0.03
ACGTcount: A:0.19, C:0.13, G:0.01, T:0.67
Consensus pattern (36 bp):
TTATTATATTTTTTCCTCTATTTAATATTTTTTCCT
Found at i:7411943 original size:19 final size:19
Alignment explanation
Indices: 7411885--7411955 Score: 73
Period size: 15 Copynumber: 4.0 Consensus size: 19
7411875 TATTATTATT
* *
7411885 ATATTTTTTCC-CTATTTC
1 ATATTTTTTCCTTTATTTA
7411903 AT-TTTTTTCCTTTA-TT-
1 ATATTTTTTCCTTTATTTA
7411919 A-A-TTTTTCCTTTATTTA
1 ATATTTTTTCCTTTATTTA
7411936 ATATTTTTTCCTTTGATTTA
1 ATATTTTTTCCTTT-ATTTA
7411956 TATACATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
15 11 0.24
16 3 0.07
17 11 0.24
18 5 0.11
19 10 0.22
20 5 0.11
ACGTcount: A:0.18, C:0.14, G:0.01, T:0.66
Consensus pattern (19 bp):
ATATTTTTTCCTTTATTTA
Found at i:7411958 original size:19 final size:18
Alignment explanation
Indices: 7411883--7411958 Score: 81
Period size: 19 Copynumber: 4.3 Consensus size: 18
7411873 GCTATTATTA
*
7411883 TTATATTTTTTCC-CTAT
1 TTATATTTTTTCCTTTAT
7411900 TTCAT-TTTTTTCCTTTA-
1 TT-ATATTTTTTCCTTTAT
7411917 TTA-A-TTTTTCCTTTAT
1 TTATATTTTTTCCTTTAT
7411933 TTAATATTTTTTCCTTTGAT
1 TT-ATATTTTTTCCTTT-AT
7411953 TTATAT
1 TTATAT
7411959 ACATATTTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
15 11 0.22
16 3 0.06
17 13 0.26
18 5 0.10
19 14 0.28
20 4 0.08
ACGTcount: A:0.18, C:0.13, G:0.01, T:0.67
Consensus pattern (18 bp):
TTATATTTTTTCCTTTAT
Found at i:7412004 original size:23 final size:22
Alignment explanation
Indices: 7411978--7412038 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 22
7411968 TATATATACA
7411978 TATTTTTGTTTAATTTATTTATT
1 TATTTTTGTTTAATTTATTTA-T
* *
7412001 TATTTTAG-TT--TTT-TCTAT
1 TATTTTTGTTTAATTTATTTAT
*
7412019 TATTTTTCTTTAATTTATTT
1 TATTTTTGTTTAATTTATTT
7412039 CATATATATT
Statistics
Matches: 29, Mismatches: 5, Indels: 9
0.67 0.12 0.21
Matches are distributed among these distances:
18 7 0.24
19 5 0.17
20 3 0.10
21 3 0.10
22 4 0.14
23 7 0.24
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (22 bp):
TATTTTTGTTTAATTTATTTAT
Found at i:7412026 original size:11 final size:12
Alignment explanation
Indices: 7412009--7412062 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 12
7411999 TTTATTTTAG
7412009 TTTTTTCTATTA
1 TTTTTTCTATTA
7412021 -TTTTTCT-TTAA
1 TTTTTTCTATT-A
7412032 TTTATTTCATATATA
1 TTT-TTTC-TAT-TA
7412047 TTTTTTCTATT-
1 TTTTTTCTATTA
7412058 TTTTT
1 TTTTT
7412063 ATTACATCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
10 2 0.06
11 13 0.36
12 3 0.08
13 7 0.19
14 5 0.14
15 5 0.14
16 1 0.03
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTTCTATTA
Found at i:7412184 original size:8 final size:8
Alignment explanation
Indices: 7412157--7412243 Score: 54
Period size: 8 Copynumber: 10.6 Consensus size: 8
7412147 TTTTGGTTTG
*
7412157 TTTAATTT
1 TTTATTTT
7412165 TTTATTATT
1 TTTATT-TT
7412174 TTT-TTATT
1 TTTATT-TT
7412182 TTTACTTTT
1 TTTA-TTTT
*
7412191 TGTA-TTT
1 TTTATTTT
7412198 TTTATTTT
1 TTTATTTT
* **
7412206 TCCT-TTGA
1 T-TTATTTT
7412214 TTTATTTT
1 TTTATTTT
*
7412222 ATTTATTTA
1 -TTTATTTT
7412231 TTTATTTT
1 TTTATTTT
7412239 TTTAT
1 TTTAT
7412244 AATAATTTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
7 7 0.11
8 34 0.56
9 18 0.30
10 2 0.03
ACGTcount: A:0.17, C:0.03, G:0.02, T:0.77
Consensus pattern (8 bp):
TTTATTTT
Done.