Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 78
Found at i:7412196 original size:23 final size:23
Alignment explanation
Indices: 7412165--7412229 Score: 73
Period size: 22 Copynumber: 2.8 Consensus size: 23
7412155 TGTTTAATTT
7412165 TTTA-TTATTTTTTTATTTTTAC
1 TTTATTTATTTTTTTATTTTTAC
*
7412187 TTT-TTGTA-TTTTTTATTTTTCC
1 TTTATT-TATTTTTTTATTTTTAC
7412209 TTTGATTTATTTTATTTATTT
1 TTT-ATTTATTTT-TTTATTT
7412230 ATTTATTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
22 20 0.56
23 4 0.11
24 5 0.14
25 7 0.19
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (23 bp):
TTTATTTATTTTTTTATTTTTAC
Found at i:7412287 original size:20 final size:20
Alignment explanation
Indices: 7412231--7412294 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
7412221 TATTTATTTA
7412231 TTTATTTTTTTATAATAATT
1 TTTATTTTTTTATAATAATT
* **
7412251 TTTCTTTTACT-T--T--TT
1 TTTATTTTTTTATAATAATT
7412266 TTTATTTTTTTATAATAATT
1 TTTATTTTTTTATAATAATT
7412286 TTTAATTTT
1 TTT-ATTTT
7412295 AAATTTAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 11
0.65 0.12 0.22
Matches are distributed among these distances:
15 10 0.31
16 1 0.03
17 1 0.03
18 1 0.03
19 1 0.03
20 13 0.41
21 5 0.16
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTATTTTTTTATAATAATT
Found at i:7412305 original size:13 final size:13
Alignment explanation
Indices: 7412285--7412319 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
7412275 TTATAATAAT
*
7412285 TTTTAATTTTAAA
1 TTTTAAATTTAAA
7412298 -TTTAAATTTAAA
1 TTTTAAATTTAAA
7412310 TTTTAAATTT
1 TTTTAAATTT
7412320 TCGCAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAAATTTAAA
Found at i:7412314 original size:7 final size:7
Alignment explanation
Indices: 7412282--7412320 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
7412272 TTTTTATAAT
*
7412282 AATTTTT
1 AATTTTA
7412289 AATTTTA
1 AATTTTA
7412296 AA-TTTA
1 AATTTTA
7412302 AA-TTTA
1 AATTTTA
7412308 AATTTTA
1 AATTTTA
7412315 AATTTT
1 AATTTT
7412321 CGCAACTTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 12 0.40
7 18 0.60
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:7419066 original size:653 final size:653
Alignment explanation
Indices: 7417821--7419133 Score: 2421
Period size: 653 Copynumber: 2.0 Consensus size: 653
7417811 ATTACAACGT
* *
7417821 ATGGAAATAAATTAGTTAAGAATATGTAAAACAATTACCGAAGTATTAGGGACTATAACGTAATT
1 ATGGAAATAAATTAGTGAAGAATATGTAAAACAATTACCGAAGTATTAGGGACTATAACATAATT
7417886 TTCCATTTTTCTAAAACCACAGAAATATATAAATGCAAAATAGTATAAATGGGGCATGCAATTCA
66 TTCCATTTTTCTAAAACCACAGAAATATATAAATGCAAAATAGTATAAATGGGGCATGCAATTCA
*
7417951 AGATAAAAATAAAAATAGCATTACAGGGGACTAAAGTGTAATAATAAGCTAAAATTGAAGGGCCA
131 AGATAAAAATAAAAATAGCATTACAGGGGACTAAAGTGTAAAAATAAGCTAAAATTGAAGGGCCA
*
7418016 AAAAATCATTCTCTCTATAATTCGTAGCAAATTAAAAAAAAGAAGATAAAGGCAAAATTACCAAA
196 AAAAATCATTCTCTCTATAATTCGTAGCAAATTAAAAAAAAGAAGATAAAGGCAAAATTACAAAA
* *
7418081 GTAGGATGCATAATCCAAAATCAAATTTAAAAAACCCTCGAACTAGTAACCAGAATGCTATTTCA
261 GTAGGACGCAAAATCCAAAATCAAATTTAAAAAACCCTCGAACTAGTAACCAGAATGCTATTTCA
7418146 CGGCAAAGATGGGATGACTACGGGGATATTTGACCCTAAACTTCTAATATAAACCCCCTTTTTGT
326 CGGCAAAGATGGGATGACTACGGGGATATTTGACCCTAAACTTCTAATATAAACCCCCTTTTTGT
*
7418211 TTTGGGTTCACTTGTAATCCTAGACTCCAAAAAATAGTTTCTCTCAGCCCTCTCCAACAGGCCTT
391 TTTGGGTTCACTTGTAATCCTAGACTCCAAAAAACAGTTTCTCTCAGCCCTCTCCAACAGGCCTT
*
7418276 TTTTCTCTCAAACCGAAGTTATCGCCGGTCACCATTGACGGTGGACGAAAAATAAAAAAAAAGAA
456 TTTTCTCTCAAACCGAAGTTACCGCCGGTCACCATTGACGGTGGACGAAAAATAAAAAAAAAGAA
7418341 CCCAATATGCTCCTTTAATTCTCTTCTATTCGAAAATACCCACAAAACATGCAAAAGCTACACAA
521 CCCAATATGCTCCTTTAATTCTCTTCTATTCGAAAATACCCACAAAACATGCAAAAGCTACACAA
*
7418406 AACGCAATAGATCTAGAAGAGAAGCTTAAAAAAAAGGTACCTTTAG-TTTTTTCTTGGATTACTT
586 AACGCAATAGATCTAGAAGAAAAGCTT-AAAAAAAGGTACCTTTAGTTTTTTTCTTGGATTACTT
7418470 TCAA
650 TCAA
*
7418474 ATGGAAATAAATTAGTGAAGAATATGTAAAACAATTACCGAATTATTAGGGACTATAACATAATT
1 ATGGAAATAAATTAGTGAAGAATATGTAAAACAATTACCGAAGTATTAGGGACTATAACATAATT
7418539 TTCCATTTTTCTAAAACCACAGAAATATATAAATGCAAAATAGTATAAATGGGGCATGCAATTCA
66 TTCCATTTTTCTAAAACCACAGAAATATATAAATGCAAAATAGTATAAATGGGGCATGCAATTCA
7418604 AGATAAAAATAAAAATAGCATTACAGGGGACTAAAGTGTAAAAATAAGCTAAAATTGAAGGGCCA
131 AGATAAAAATAAAAATAGCATTACAGGGGACTAAAGTGTAAAAATAAGCTAAAATTGAAGGGCCA
* * * *
7418669 AAAAATTATTCTCTCTATAATTCTTAGCAAATTAAAAAACAGAAGATAAAGGCAAAATTATAAAA
196 AAAAATCATTCTCTCTATAATTCGTAGCAAATTAAAAAAAAGAAGATAAAGGCAAAATTACAAAA
* *
7418734 GTAGGACGCAAAATCCAAAATTAAATTTAAAAAACCCTCGAACTAGTAACCATAATGCTATTTCA
261 GTAGGACGCAAAATCCAAAATCAAATTTAAAAAACCCTCGAACTAGTAACCAGAATGCTATTTCA
7418799 CGGCAAAGATGGGATGACTACGGGGATATTTGACCCTAAACTTCTAATATAAACCCCCTTTTTGT
326 CGGCAAAGATGGGATGACTACGGGGATATTTGACCCTAAACTTCTAATATAAACCCCCTTTTTGT
*
7418864 TTTGGGTTCACTTGTAATCCTAGACTCCAAAAAACAGTTTCTCTCAGCCCTCTCCAACATGCCTT
391 TTTGGGTTCACTTGTAATCCTAGACTCCAAAAAACAGTTTCTCTCAGCCCTCTCCAACAGGCCTT
7418929 TTTTCTCTCAAACCGAAGTTACCGCCGGTCACCATTGACGGTGGACGAAAAATAAAAAAAAAGAA
456 TTTTCTCTCAAACCGAAGTTACCGCCGGTCACCATTGACGGTGGACGAAAAATAAAAAAAAAGAA
7418994 CCCAATATGCTCCTTTAATTCTCTTCTATTCGAAAATACCCACAAAACATGCAAAAGCTACACAA
521 CCCAATATGCTCCTTTAATTCTCTTCTATTCGAAAATACCCACAAAACATGCAAAAGCTACACAA
* *
7419059 AACGCAATAGATCTAGAAGAAAAGCTTAAAAAAATGTACCTTTAGTTTTTTTTTTTGGATTACTT
586 AACGCAATAGATCTAGAAGAAAAGCTTAAAAAAAGGTACCTTTAG-TTTTTTTCTTGGATTACTT
*
7419124 TGAA
650 TCAA
7419128 ATGGAA
1 ATGGAA
7419134 TTGTTACAAG
Statistics
Matches: 638, Mismatches: 20, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
652 17 0.03
653 595 0.93
654 26 0.04
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (653 bp):
ATGGAAATAAATTAGTGAAGAATATGTAAAACAATTACCGAAGTATTAGGGACTATAACATAATT
TTCCATTTTTCTAAAACCACAGAAATATATAAATGCAAAATAGTATAAATGGGGCATGCAATTCA
AGATAAAAATAAAAATAGCATTACAGGGGACTAAAGTGTAAAAATAAGCTAAAATTGAAGGGCCA
AAAAATCATTCTCTCTATAATTCGTAGCAAATTAAAAAAAAGAAGATAAAGGCAAAATTACAAAA
GTAGGACGCAAAATCCAAAATCAAATTTAAAAAACCCTCGAACTAGTAACCAGAATGCTATTTCA
CGGCAAAGATGGGATGACTACGGGGATATTTGACCCTAAACTTCTAATATAAACCCCCTTTTTGT
TTTGGGTTCACTTGTAATCCTAGACTCCAAAAAACAGTTTCTCTCAGCCCTCTCCAACAGGCCTT
TTTTCTCTCAAACCGAAGTTACCGCCGGTCACCATTGACGGTGGACGAAAAATAAAAAAAAAGAA
CCCAATATGCTCCTTTAATTCTCTTCTATTCGAAAATACCCACAAAACATGCAAAAGCTACACAA
AACGCAATAGATCTAGAAGAAAAGCTTAAAAAAAGGTACCTTTAGTTTTTTTCTTGGATTACTTT
CAA
Found at i:7419713 original size:6 final size:6
Alignment explanation
Indices: 7419704--7419785 Score: 139
Period size: 6 Copynumber: 13.8 Consensus size: 6
7419694 AAAATAATAA
*
7419704 TAAAAG TAAAAA TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG
1 TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG
*
7419752 TAAAAG TAAAAG TAAAAG TAAAA- TAAAAA TAAAA
1 TAAAAG TAAAAG TAAAAG TAAAAG TAAAAG TAAAA
7419786 AAACAAATAA
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
5 5 0.07
6 68 0.93
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (6 bp):
TAAAAG
Found at i:7419786 original size:6 final size:6
Alignment explanation
Indices: 7419678--7419833 Score: 127
Period size: 6 Copynumber: 26.2 Consensus size: 6
7419668 AAGGGCCTAT
* * * *
7419678 AATAAA AATAAT AATAAA AATAAT AATAAA AGTAAA AATAAA AGTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * * * * * *
7419726 AGTAAA AGTAAA AGTAAA AGTAAA AGTAAA AGTAAA AGTAAA AGT-AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* * * **
7419773 AATAAA AATAAA AA-AACA AATAAA AATAAT AATAAT AATAAT AATAGT
1 AATAAA AATAAA AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA
*
7419821 AATAAT AATAAA A
1 AATAAA AATAAA A
7419834 GATCCGGGCA
Statistics
Matches: 135, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
5 6 0.04
6 127 0.94
7 2 0.01
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:7419803 original size:3 final size:3
Alignment explanation
Indices: 7419791--7419831 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
7419781 TAAAAAAACA
* *
7419791 AAT AAA AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7419832 AAGATCCGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:7419803 original size:9 final size:9
Alignment explanation
Indices: 7419773--7419833 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
7419763 GTAAAAGTAA
7419773 AATAAAAAT
1 AATAAAAAT
*
7419782 AA-AAAAACA
1 AATAAAAA-T
7419791 AATAAAAAT
1 AATAAAAAT
*
7419800 AATAATAAT
1 AATAAAAAT
*
7419809 AATAATAAT
1 AATAAAAAT
* *
7419818 AGTAATAAT
1 AATAAAAAT
7419827 AATAAAA
1 AATAAAA
7419834 GATCCGGGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
8 5 0.11
9 34 0.77
10 5 0.11
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (9 bp):
AATAAAAAT
Found at i:7422686 original size:66 final size:66
Alignment explanation
Indices: 7422580--7422708 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 66
7422570 TAGGTCCATA
* * *
7422580 AGGAATTACTAGTCAGTGCTGAATCTATTAAAGGAATTACCAGCAGCTACTGAACCTGCCAGATA
1 AGGAATTACCAGTCAGTGCTGAACCTATTAAAGGAATTACCAGCAGCGACTGAACCTGCCAGATA
7422645 T
66 T
* * *
7422646 AGGAATTACCGGTCAGTGTTGAACCTA-TACAAGGAATTACCAGCAGCGACTGAACTTGCCAGA
1 AGGAATTACCAGTCAGTGCTGAACCTATTA-AAGGAATTACCAGCAGCGACTGAACCTGCCAGA
7422709 GTCTTCAGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 2 0.04
66 54 0.96
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (66 bp):
AGGAATTACCAGTCAGTGCTGAACCTATTAAAGGAATTACCAGCAGCGACTGAACCTGCCAGATA
T
Found at i:7422700 original size:31 final size:30
Alignment explanation
Indices: 7422579--7422700 Score: 77
Period size: 31 Copynumber: 3.8 Consensus size: 30
7422569 TTAGGTCCAT
* * *
7422579 AAGGAATTACTAGTCAGTGCTGAATCTATTA
1 AAGGAATTACCAGTCAGCGCTGAACCTA-TA
*
7422610 AAGGAATTACCAG-CAGCTACTGAACCTGCCAGATA
1 AAGGAATTACCAGTCAGC-GCTGAACCT-----ATA
* * * *
7422645 TAGGAATTACCGGTCAGTGTTGAACCTATA
1 AAGGAATTACCAGTCAGCGCTGAACCTATA
7422675 CAAGGAATTACCAG-CAGCGACTGAAC
1 -AAGGAATTACCAGTCAGCG-CTGAAC
7422701 TTGCCAGAGT
Statistics
Matches: 69, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
30 10 0.14
31 35 0.51
35 20 0.29
36 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (30 bp):
AAGGAATTACCAGTCAGCGCTGAACCTATA
Found at i:7424925 original size:18 final size:18
Alignment explanation
Indices: 7424902--7424937 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7424892 TATTATCATT
*
7424902 ATTTCATTCAATTCTGTC
1 ATTTCATTCAATTATGTC
7424920 ATTTCATTCAATTATGTC
1 ATTTCATTCAATTATGTC
7424938 TGTGGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (18 bp):
ATTTCATTCAATTATGTC
Found at i:7432740 original size:18 final size:18
Alignment explanation
Indices: 7432698--7432741 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
7432688 AAAAACCGGG
7432698 TGATTTTAATAAAATATC
1 TGATTTTAATAAAATATC
* *
7432716 TTATTTTATTAAAATA-C
1 TGATTTTAATAAAATATC
7432733 TGAGTTTTA
1 TGA-TTTTA
7432742 GGGTCTTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (18 bp):
TGATTTTAATAAAATATC
Found at i:7435660 original size:30 final size:30
Alignment explanation
Indices: 7435624--7435691 Score: 127
Period size: 30 Copynumber: 2.2 Consensus size: 30
7435614 ATGACTATTC
7435624 AACATTAATCTATTTTTTATTATTATGCCA
1 AACATTAATCTATTTTTTATTATTATGCCA
7435654 AACATTAATCTATTTTTTATTATTATGCCA
1 AACATTAATCTATTTTTTATTATTATGCCA
7435684 AACTATTA
1 AAC-ATTA
7435692 TGTACATACC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 33 0.89
31 4 0.11
ACGTcount: A:0.35, C:0.13, G:0.03, T:0.49
Consensus pattern (30 bp):
AACATTAATCTATTTTTTATTATTATGCCA
Found at i:7437114 original size:21 final size:21
Alignment explanation
Indices: 7437063--7437115 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7437053 ATTATGACTA
7437063 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
7437084 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
7437105 TCGCAATGCGA
1 TCGCAATGCGA
7437116 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:7437191 original size:41 final size:41
Alignment explanation
Indices: 7437146--7437238 Score: 100
Period size: 41 Copynumber: 2.3 Consensus size: 41
7437136 ATTTGGAAAA
*
7437146 TCGCAATGCGATACTGAC-TA-TCGCAATGCAATTTTCCTAAT
1 TCGCAATGCGAT--TGACGTATTCGCAATGCAATTTTCATAAT
* * ** *
7437187 TCGCATTGCGATTTACGTATTCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGATTGACGTATTCGCAATGCAATTTTCATAAT
7437228 TCGCAATGCGA
1 TCGCAATGCGA
7437239 ATACGTAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.07
40 2 0.05
41 38 0.88
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (41 bp):
TCGCAATGCGATTGACGTATTCGCAATGCAATTTTCATAAT
Found at i:7437200 original size:21 final size:21
Alignment explanation
Indices: 7437166--7437238 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
7437156 ATACTGACTA
* *
7437166 TCGCAATGCAATTTTCCTAAT
1 TCGCAATGCGATTTTCATAAT
* * *
7437187 TCGCATTGCGATTTACGT-AT
1 TCGCAATGCGATTTTCATAAT
**
7437207 TCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGATTTTCATAAT
7437228 TCGCAATGCGA
1 TCGCAATGCGA
7437239 ATACGTAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (21 bp):
TCGCAATGCGATTTTCATAAT
Found at i:7437290 original size:41 final size:41
Alignment explanation
Indices: 7437228--7437321 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
7437218 TTTTCATAAT
* *
7437228 TCGCAATGCGAA-TACGTAAATCACAACACGATTAAGTAAA
1 TCGCAATGCGAATTACGAAAATCACAACACGAATAAGTAAA
* * ** *
7437268 TCGCAATGCGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATTACGAAAATCACAACACGAATAAGTAAA
7437309 TCGCAATGCGAAT
1 TCGCAATGCGAAT
7437322 CTTACTATCG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 12 0.26
41 34 0.74
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (41 bp):
TCGCAATGCGAATTACGAAAATCACAACACGAATAAGTAAA
Found at i:7437311 original size:20 final size:20
Alignment explanation
Indices: 7437228--7437339 Score: 118
Period size: 20 Copynumber: 5.5 Consensus size: 20
7437218 TTTTCATAAT
7437228 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** * *
7437248 TCACAACACGATTAAGTAAA
1 TCGCAATGCGAATACGTAAA
* *
7437268 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
7437289 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
7437309 TCGCAATGCGAAT-CTTACTA
1 TCGCAATGCGAATACGTA-AA
7437329 TCGCAATGCGA
1 TCGCAATGCGA
7437340 TTTACATAGC
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
19 3 0.04
20 54 0.72
21 18 0.24
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:7437939 original size:19 final size:19
Alignment explanation
Indices: 7437917--7438081 Score: 143
Period size: 19 Copynumber: 9.1 Consensus size: 19
7437907 GAAACCAAAA
*
7437917 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7437936 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7437955 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
7437974 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
7437988 TCTCGTTACGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
7438007 TCGCGTTGTGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * **
7438021 TCTCGTTACGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
7438040 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
7438060 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
7438080 TC
1 TC
7438082 AACCAAAAGA
Statistics
Matches: 116, Mismatches: 18, Indels: 24
0.73 0.11 0.15
Matches are distributed among these distances:
14 16 0.14
16 5 0.04
17 6 0.05
19 58 0.50
20 30 0.26
21 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7438005 original size:33 final size:33
Alignment explanation
Indices: 7437925--7438056 Score: 156
Period size: 33 Copynumber: 3.8 Consensus size: 33
7437915 AATCGCATTG
* *
7437925 CGATTTTCATTTCGCGTTGCGATTTTCATTTCGCGTTG
1 CGATTTTCATTTCGCGTTGCGA--TTC---TCTCGTTA
*
7437963 CGATTTTCATTTCGCGTTGTGATTCTCTCGTTA
1 CGATTTTCATTTCGCGTTGCGATTCTCTCGTTA
*
7437996 CGATTTTCATTTCGCGTTGTGATTCTCTCGTTA
1 CGATTTTCATTTCGCGTTGCGATTCTCTCGTTA
**
7438029 CGATAGTCATTTCCGCGTTGCGATTCTC
1 CGATTTTCATTT-CGCGTTGCGATTCTC
7438057 ATTATCTCGT
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
33 49 0.56
34 14 0.16
36 3 0.03
38 21 0.24
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (33 bp):
CGATTTTCATTTCGCGTTGCGATTCTCTCGTTA
Found at i:7438058 original size:20 final size:20
Alignment explanation
Indices: 7438035--7438081 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7438025 GTTACGATAG
7438035 TCATTTCCGCGTTGCGATTC
1 TCATTTCCGCGTTGCGATTC
* *
7438055 TCATTAT-CTCGTTGCGATTT
1 TCATT-TCCGCGTTGCGATTC
7438075 TCATTTC
1 TCATTTC
7438082 AACCAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.04
20 21 0.91
21 1 0.04
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.47
Consensus pattern (20 bp):
TCATTTCCGCGTTGCGATTC
Found at i:7438224 original size:25 final size:25
Alignment explanation
Indices: 7438146--7438210 Score: 130
Period size: 25 Copynumber: 2.6 Consensus size: 25
7438136 TATGTTTATT
7438146 GTTTTTGGTATATCTTCACAGTGTA
1 GTTTTTGGTATATCTTCACAGTGTA
7438171 GTTTTTGGTATATCTTCACAGTGTA
1 GTTTTTGGTATATCTTCACAGTGTA
7438196 GTTTTTGGTATATCT
1 GTTTTTGGTATATCT
7438211 AACTTGGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.18, C:0.11, G:0.20, T:0.51
Consensus pattern (25 bp):
GTTTTTGGTATATCTTCACAGTGTA
Found at i:7440272 original size:42 final size:42
Alignment explanation
Indices: 7440226--7440311 Score: 95
Period size: 42 Copynumber: 2.0 Consensus size: 42
7440216 ATCGTTGAAA
* *
7440226 AGGCCCCTATCATTCCTCG-AGA-GTCCCCTCCCACCATTTAAG
1 AGGCCACTATCA-TCCTCGAAGAGGT-CCCTCCCACCATTCAAG
* * *
7440268 AGGCCACTGTCATCGTTGAAGAGGTCCCTCCCACCATTCAAG
1 AGGCCACTATCATCCTCGAAGAGGTCCCTCCCACCATTCAAG
7440310 AG
1 AG
7440312 CCCGATTCAC
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
41 4 0.11
42 31 0.84
43 2 0.05
ACGTcount: A:0.23, C:0.36, G:0.19, T:0.22
Consensus pattern (42 bp):
AGGCCACTATCATCCTCGAAGAGGTCCCTCCCACCATTCAAG
Found at i:7440310 original size:21 final size:20
Alignment explanation
Indices: 7440251--7440311 Score: 50
Period size: 21 Copynumber: 3.0 Consensus size: 20
7440241 CTCGAGAGTC
*
7440251 CCCTCCCACCATTTAAGAGG
1 CCCTCCCACCATTCAAGAGG
** * * *
7440271 CCACTGTCATCGTTGAAGAGG
1 CC-CTCCCACCATTCAAGAGG
7440292 TCCCTCCCACCATTCAAGAG
1 -CCCTCCCACCATTCAAGAG
7440312 CCCGATTCAC
Statistics
Matches: 29, Mismatches: 10, Indels: 3
0.69 0.24 0.07
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.25, C:0.36, G:0.18, T:0.21
Consensus pattern (20 bp):
CCCTCCCACCATTCAAGAGG
Found at i:7441681 original size:14 final size:14
Alignment explanation
Indices: 7441662--7441697 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
7441652 ATTGTTTAAT
7441662 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
7441676 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
7441690 TGATTTGT
1 TGATTTGT
7441698 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:7441849 original size:33 final size:33
Alignment explanation
Indices: 7441807--7441883 Score: 136
Period size: 33 Copynumber: 2.3 Consensus size: 33
7441797 AAGTACTATT
* *
7441807 GCAATGCGAAATGAAAATCGCAACGAGAGAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATC
7441840 GCAATGCGAAATGAAAATCGCAACGACAAAATC
1 GCAATGCGAAATGAAAATCGCAACGACAAAATC
7441873 GCAATGCGAAA
1 GCAATGCGAAA
7441884 CTAAATTCGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (33 bp):
GCAATGCGAAATGAAAATCGCAACGACAAAATC
Found at i:7441860 original size:19 final size:19
Alignment explanation
Indices: 7441807--7441862 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
7441797 AAGTACTATT
7441807 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
*
7441826 GCAA--CG--A-GAGAATC
1 GCAATGCGAAATGAAAATC
7441840 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
7441859 GCAA
1 GCAA
7441863 CGACAAAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 2 0.07
18 1 0.03
19 14 0.47
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.12
Consensus pattern (19 bp):
GCAATGCGAAATGAAAATC
Found at i:7441911 original size:19 final size:19
Alignment explanation
Indices: 7441889--7442025 Score: 123
Period size: 19 Copynumber: 7.7 Consensus size: 19
7441879 CGAAACTAAA
7441889 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
7441908 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
7441927 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
7441941 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
7441960 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
7441975 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
7441993 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
7442012 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
7442026 AGACATTAAG
Statistics
Matches: 94, Mismatches: 13, Indels: 21
0.73 0.10 0.16
Matches are distributed among these distances:
14 21 0.22
16 3 0.03
17 3 0.03
19 57 0.61
20 10 0.11
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:7442005 original size:33 final size:32
Alignment explanation
Indices: 7441906--7442005 Score: 164
Period size: 33 Copynumber: 3.1 Consensus size: 32
7441896 TGCGATTTTC
7441906 ATTTCGCGTTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCGTTGCGATTTTCATTTCGCATTGCG
*
7441938 AAATTCGCGTTGCGATTTTCATTTCGCATTGCG
1 -ATTTCGCGTTGCGATTTTCATTTCGCATTGCG
*
7441971 ATTCTCTCGTTGCGATTTTCATTTCGCATTGCG
1 ATT-TCGCGTTGCGATTTTCATTTCGCATTGCG
7442004 AT
1 AT
7442006 AGTAATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 2 0.03
33 61 0.97
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.43
Consensus pattern (32 bp):
ATTTCGCGTTGCGATTTTCATTTCGCATTGCG
Found at i:7442776 original size:20 final size:20
Alignment explanation
Indices: 7442661--7442768 Score: 137
Period size: 20 Copynumber: 5.4 Consensus size: 20
7442651 CAACGGGGAA
*
7442661 ATCGCAACGCAAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
7442681 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
7442701 ATCGCAACGCAAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
** ***
7442721 ATCGCAATTCG-AAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
7442741 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
7442761 ATCGCAAC
1 ATCGCAAC
7442769 TAGAAAATCG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
19 5 0.07
20 63 0.86
21 5 0.07
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:7442823 original size:14 final size:16
Alignment explanation
Indices: 7442799--7442872 Score: 57
Period size: 19 Copynumber: 4.5 Consensus size: 16
7442789 TCAAAATCGC
*
7442799 ATTGTGATTTTC-TCG
1 ATTGCGATTTTCTTCG
7442814 -TTGCGATTTTCATTTCG
1 ATTGCGATTTTC--TTCG
7442831 CATTGCGATTTTCATTTCG
1 -ATTGCGATTTTC--TTCG
7442850 TATTGCGATTTTC-TCG
1 -ATTGCGATTTTCTTCG
7442866 -TTGCGAT
1 ATTGCGAT
7442873 AGTCAGTTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
14 17 0.33
16 3 0.06
17 3 0.06
19 29 0.56
ACGTcount: A:0.14, C:0.18, G:0.19, T:0.50
Consensus pattern (16 bp):
ATTGCGATTTTCTTCG
Found at i:7442836 original size:19 final size:19
Alignment explanation
Indices: 7442814--7442862 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
7442804 GATTTTCTCG
7442814 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
7442833 TTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCA
7442852 TTGCGATTTTC
1 TTGCGATTTTC
7442863 TCGTTGCGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.16, T:0.51
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7442890 original size:20 final size:20
Alignment explanation
Indices: 7442865--7442903 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7442855 CGATTTTCTC
7442865 GTTGCGATAGTCAGTTTTGT
1 GTTGCGATAGTCAGTTTTGT
*
7442885 GTTGCGATAGTCTGTTTTG
1 GTTGCGATAGTCAGTTTTG
7442904 CCTTCAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.10, G:0.31, T:0.46
Consensus pattern (20 bp):
GTTGCGATAGTCAGTTTTGT
Found at i:7445246 original size:20 final size:20
Alignment explanation
Indices: 7445221--7445275 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
7445211 GAATAGTTTC
7445221 TGAAAATGAAAATCGCAACA
1 TGAAAATGAAAATCGCAACA
*
7445241 TGAAAATGACAATCGCAACA
1 TGAAAATGAAAATCGCAACA
* *
7445261 AGAGAAT-AAAATCGC
1 TGAAAATGAAAATCGC
7445276 GTTGCGATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 7 0.23
20 24 0.77
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.15
Consensus pattern (20 bp):
TGAAAATGAAAATCGCAACA
Found at i:7445452 original size:17 final size:17
Alignment explanation
Indices: 7445419--7445452 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7445409 TAATAATAAT
*
7445419 GAAAAAAATTCAAAAAA
1 GAAAAAAATTAAAAAAA
*
7445436 GAAAATAATTAAAAAAA
1 GAAAAAAATTAAAAAAA
7445453 ACTAACCCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (17 bp):
GAAAAAAATTAAAAAAA
Found at i:7445564 original size:22 final size:22
Alignment explanation
Indices: 7445525--7445568 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7445515 GATGGAGATA
*
7445525 GACGGATTTTTCCGGAGATGGG
1 GACGGATTTTTCCAGAGATGGG
7445547 GACGGATTTTGT-CAGAGATGGG
1 GACGGATTTT-TCCAGAGATGGG
7445569 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.20, C:0.11, G:0.41, T:0.27
Consensus pattern (22 bp):
GACGGATTTTTCCAGAGATGGG
Found at i:7445786 original size:20 final size:20
Alignment explanation
Indices: 7445761--7445827 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
7445751 GTATTATCTC
*
7445761 GTTGCGAAAGTCAGTATTGA
1 GTTGCGAAAGTCAGTATCGA
* *
7445781 GTTGCGAAATTAAGTATCGA
1 GTTGCGAAAGTCAGTATCGA
* *
7445801 GTTGCAAAAGTCAGTATCGC
1 GTTGCGAAAGTCAGTATCGA
7445821 GTTGCGA
1 GTTGCGA
7445828 TTTTGTATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (20 bp):
GTTGCGAAAGTCAGTATCGA
Found at i:7445931 original size:21 final size:22
Alignment explanation
Indices: 7445880--7445931 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
7445870 TTTATTTATC
7445880 CGCATTGCG-AATTGGGAAAAT
1 CGCATTGCGAAATTGGGAAAAT
**
7445901 CGCAACGCGAAATT-GGAAAAT
1 CGCATTGCGAAATTGGGAAAAT
7445922 CGCATTGCGA
1 CGCATTGCGA
7445932 TAGTCATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (22 bp):
CGCATTGCGAAATTGGGAAAAT
Found at i:7446287 original size:12 final size:11
Alignment explanation
Indices: 7446257--7446281 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7446247 TCTTAATATT
7446257 ATAAATTAAAA
1 ATAAATTAAAA
7446268 ATAAATTAAAA
1 ATAAATTAAAA
7446279 ATA
1 ATA
7446282 TCATTATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAATTAAAA
Found at i:7450387 original size:2 final size:2
Alignment explanation
Indices: 7450380--7450424 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
7450370 TTAATCTACA
7450380 AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7450421 AT AT
1 AT AT
7450425 TACGAAATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7450584 original size:85 final size:85
Alignment explanation
Indices: 7450441--7450606 Score: 280
Period size: 85 Copynumber: 2.0 Consensus size: 85
7450431 ATACAATCAC
*
7450441 GACACACGAATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
1 GACACACAAATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
7450506 AATACGTGTCATAAATTTAT
66 AATACGTGTCATAAATTTAT
* *
7450526 GACACACAAATGTGTGTCATCTTT-ATTTATGATGGGGGCTTCAATGACGCGCAATGTAAGTCAT
1 GACACACAAATGTGTGTCAT-TTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCAT
*
7450590 AAATGCGTGTCATAAAT
65 AAATACGTGTCATAAAT
7450607 GTACGTCATA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 73 0.96
86 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (85 bp):
GACACACAAATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
AATACGTGTCATAAATTTAT
Found at i:7450601 original size:13 final size:13
Alignment explanation
Indices: 7450585--7450645 Score: 86
Period size: 13 Copynumber: 4.7 Consensus size: 13
7450575 CGCAATGTAA
*
7450585 GTCATAAATGCGT
1 GTCATAAATGCGC
**
7450598 GTCATAAATGTAC
1 GTCATAAATGCGC
*
7450611 GTCATAAATGCGT
1 GTCATAAATGCGC
7450624 GTCATAAATGCGC
1 GTCATAAATGCGC
7450637 GTCATAAAT
1 GTCATAAAT
7450646 TTATGATGCG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:7450607 original size:26 final size:26
Alignment explanation
Indices: 7450578--7450633 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
7450568 AATGACGCGC
7450578 AATGTAAGTCATAAATGCGTGTCATA
1 AATGTAAGTCATAAATGCGTGTCATA
*
7450604 AATGTACGTCATAAATGCGTGTCATA
1 AATGTAAGTCATAAATGCGTGTCATA
7450630 AATG
1 AATG
7450634 CGCGTCATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (26 bp):
AATGTAAGTCATAAATGCGTGTCATA
Found at i:7450639 original size:26 final size:26
Alignment explanation
Indices: 7450585--7450645 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
7450575 CGCAATGTAA
*
7450585 GTCATAAATGCGTGTCATAAATGTAC
1 GTCATAAATGCGTGTCATAAATGCAC
*
7450611 GTCATAAATGCGTGTCATAAATGCGC
1 GTCATAAATGCGTGTCATAAATGCAC
7450637 GTCATAAAT
1 GTCATAAAT
7450646 TTATGATGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (26 bp):
GTCATAAATGCGTGTCATAAATGCAC
Found at i:7458753 original size:11 final size:11
Alignment explanation
Indices: 7458737--7458762 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7458727 GTGTTTGTTC
7458737 TATTTTTATTT
1 TATTTTTATTT
7458748 TATTTTTATTT
1 TATTTTTATTT
7458759 TATT
1 TATT
7458763 GCATTTGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:7461585 original size:14 final size:13
Alignment explanation
Indices: 7461566--7461647 Score: 53
Period size: 14 Copynumber: 6.1 Consensus size: 13
7461556 AGATATAAGC
*
7461566 AAAAAATGAAAGA
1 AAAAAAAGAAAGA
*
7461579 AAAAAAAGATAGGA
1 AAAAAAAGA-AAGA
*
7461593 AAAAGAAGGAAA-A
1 AAAA-AAAGAAAGA
7461606 AGAAAAAATGAGAA-A
1 A-AAAAAA-GA-AAGA
*
7461621 AAAAAAA-AGAGA
1 AAAAAAAGAAAGA
7461633 AAAGAAAAGAAAGA
1 AAA-AAAAGAAAGA
7461647 A
1 A
7461648 GGAAAAATCG
Statistics
Matches: 54, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
11 1 0.02
12 5 0.09
13 16 0.30
14 24 0.44
15 8 0.15
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.04
Consensus pattern (13 bp):
AAAAAAAGAAAGA
Found at i:7461608 original size:30 final size:30
Alignment explanation
Indices: 7461574--7461654 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 30
7461564 GCAAAAAATG
* *
7461574 AAAGAAAAAAAAGATAGGAAAAAGAAGGA-A
1 AAAGAAAAAAAAGA-AGGAAAAAAAAAGAGA
*
7461604 AAAGAAAAAATGAGAA--AAAAAAAAAGAGA
1 AAAGAAAAAA-AAGAAGGAAAAAAAAAGAGA
*
7461633 AAAGAAAAGAAAGAAGGAAAAA
1 AAAGAAAAAAAAGAAGGAAAAA
7461655 TCGATCAAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
28 13 0.31
29 10 0.24
30 16 0.38
31 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (30 bp):
AAAGAAAAAAAAGAAGGAAAAAAAAAGAGA
Found at i:7461611 original size:29 final size:29
Alignment explanation
Indices: 7461574--7461654 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 29
7461564 GCAAAAAATG
* *
7461574 AAAGAAAAAAAAGATAGGAAAAAGAAGGA-A
1 AAAG-AAAAAAAGA-AGGAAAAAAAAAGAGA
7461604 AAAGAAAAAATGAGAA--AAAAAAAAAGAGA
1 AAAGAAAAAA--AGAAGGAAAAAAAAAGAGA
7461633 AAAGAAAAGAAAGAAGGAAAAA
1 AAAGAAAA-AAAGAAGGAAAAA
7461655 TCGATCAAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
28 13 0.30
29 15 0.35
30 12 0.28
31 3 0.07
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (29 bp):
AAAGAAAAAAAGAAGGAAAAAAAAAGAGA
Found at i:7461612 original size:16 final size:16
Alignment explanation
Indices: 7461592--7461654 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 16
7461582 AAAAGATAGG
7461592 AAAAAGAAGGAAAAAGA
1 AAAAAGAAGGAAAAA-A
7461609 AAAAATG-A-GAAAAAA
1 AAAAA-GAAGGAAAAAA
7461624 AAAAAG-A-GAAAAGAA
1 AAAAAGAAGGAAAA-AA
7461639 AAGAAAGAAGGAAAAA
1 AA-AAAGAAGGAAAAA
7461655 TCGATCAAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 7 0.17
15 10 0.24
16 10 0.24
17 8 0.20
18 6 0.15
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.02
Consensus pattern (16 bp):
AAAAAGAAGGAAAAAA
Found at i:7461635 original size:10 final size:9
Alignment explanation
Indices: 7461574--7461647 Score: 51
Period size: 10 Copynumber: 7.7 Consensus size: 9
7461564 GCAAAAAATG
7461574 AAAGAAAAA
1 AAAGAAAAA
*
7461583 AAAGATAGGAA
1 AAAGA-A-AAA
*
7461594 AAAGAAGGAA
1 AAAGAA-AAA
7461604 AAAGAAAAA
1 AAAGAAAAA
*
7461613 ATGAGAAAAA
1 A-AAGAAAAA
7461623 AAA-AAAGAGA
1 AAAGAAA-A-A
*
7461633 AAAGAAAAG
1 AAAGAAAAA
7461642 AAAGAA
1 AAAGAA
7461648 GGAAAAATCG
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
8 3 0.06
9 16 0.30
10 25 0.46
11 10 0.19
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:7461655 original size:41 final size:42
Alignment explanation
Indices: 7461566--7461647 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
7461556 AGATATAAGC
* *
7461566 AAAAAATGAAAGAAAAAAAAGATAGGAAAAAGAAGGAAAAAG
1 AAAAAATGAAAGAAAAAAAAGAGAGGAAAAAGAAAGAAAAAG
* **
7461608 AAAAAATGAGAAAAAAAAAAAGAGAAAAGAAAAGAAAGAA
1 AAAAAATGA-AAGAAAAAAAAGAGAGGA-AAAAGAAAGAA
7461648 GGAAAAATCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 9 0.27
43 14 0.42
44 10 0.30
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.04
Consensus pattern (42 bp):
AAAAAATGAAAGAAAAAAAAGAGAGGAAAAAGAAAGAAAAAG
Found at i:7464198 original size:55 final size:55
Alignment explanation
Indices: 7464114--7464900 Score: 1045
Period size: 55 Copynumber: 14.3 Consensus size: 55
7464104 TGAAGCAAAA
* *
7464114 GAAGATTGTTCGAGACTTATACTCTCTGAAGAAATAGAGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
7464169 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGGCGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
** * *
7464224 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGATATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * * *
7464279 AAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
7464334 GAAGATTG-T-GGGTCTTATACACTCTGAAGAAATAGGGGGCAGAAGTGGGGCAGAAGTGATCGT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAG-A------C----GCGATCGT
7464397 T
55 T
* * *
7464398 GAGGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
7464453 GAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
** * *
7464506 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACATGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
7464561 GAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGGAGACGCGATCGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
7464614 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
7464669 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGTAGACGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* **
7464724 AAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
7464779 GAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * * **
7464832 GAAGATTGTTCGAGTCTTATACTCTCTGAA-AGACTAGGGAGCTGACGCGATTTTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGA-AATAGGGGGCAGACGCGATCGTT
7464887 GAAGA-TGTTCGAGT
1 GAAGATTGTTCGAGT
7464901 TCTATTCTCC
Statistics
Matches: 649, Mismatches: 63, Indels: 41
0.86 0.08 0.05
Matches are distributed among these distances:
53 175 0.27
54 18 0.03
55 409 0.63
59 1 0.00
64 13 0.02
65 2 0.00
66 31 0.05
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:7464881 original size:163 final size:165
Alignment explanation
Indices: 7464114--7464900 Score: 1049
Period size: 163 Copynumber: 4.8 Consensus size: 165
7464104 TGAAGCAAAA
* *
7464114 GAAGATTGTTCGAGACTTATACTCTCTGAAGAAATAGAGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
* * * *
7464179 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGGCGCGATCGTTGAAGATTGTTCGAGTCTTAT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGAGCTGACGCGATTGTTGAAGATTGTTCGAGTCTTAT
**
7464244 ACTCTCTGAAGAAATAGGGGGCAGACGATATTGAT
131 ACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* * * *
7464279 AAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGATTGATGAAGATTG-T
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
* * * ** *
7464343 -GGGTCTTATACACTCTGAAGAAATAGGGGGCAGAAGTGGGGCAGAAGTGATCGTTGAGGATTGT
66 CGAGTCTTATACTCTCTGAAGAAATA--GGG-AG--CTGACGC-G-A-T--T-GTTGAAGATTGT
7464407 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
120 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
7464453 GAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
* * ** * *
7464516 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACATGATTGATGAAGATTG-T-GGGTCTTAT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGAGCTGACGCGATTGTTGAAGATTGTTCGAGTCTTAT
* *
7464579 ACTCTCTGAAGAAATAGGGGGGAGACGCGATCGAT
131 ACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
7464614 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
* * *
7464679 CGAGTCTTATACTCTCTGAAGAAATAGGG-GGTAGACGCGATTGATAAAGATTGTTCGAGTCTTA
66 CGAGTCTTATACTCTCTGAAGAAATAGGGAGCT-GACGCGATTGTTGAAGATTGTTCGAGTCTTA
7464743 TACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATT
130 TACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA-T
* *
7464779 GAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
* *
7464842 CGAGTCTTATACTCTCTGAA-AGACTAGGGAGCTGACGCGATTTTTGAAGA-TGTTCGAGT
66 CGAGTCTTATACTCTCTGAAGA-AATAGGGAGCTGACGCGATTGTTGAAGATTGTTCGAGT
7464901 TCTATTCTCC
Statistics
Matches: 550, Mismatches: 51, Indels: 45
0.85 0.08 0.07
Matches are distributed among these distances:
161 49 0.09
162 13 0.02
163 223 0.41
164 7 0.01
165 107 0.19
166 2 0.00
167 1 0.00
168 5 0.01
169 2 0.00
170 1 0.00
171 2 0.00
172 51 0.09
173 2 0.00
174 85 0.15
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (165 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
CGAGTCTTATACTCTCTGAAGAAATAGGGAGCTGACGCGATTGTTGAAGATTGTTCGAGTCTTAT
ACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
Found at i:7464932 original size:108 final size:108
Alignment explanation
Indices: 7464380--7464892 Score: 794
Period size: 108 Copynumber: 4.7 Consensus size: 108
7464370 GGGCAGAAGT
* * *
7464380 GGGGCAGAAGTGATCGTTGAGGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
1 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
*
7464445 CGATTGATGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
66 CGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
*
7464488 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACA
1 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
* *
7464553 TGATTGATGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
66 CGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
* * *
7464596 GGGGGAGACGCGATCGATGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACA
1 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
* *
7464661 CGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAG
66 CGATTGTTGAAGATTG-T-GGGTCTTATACTCTCTGAAGAAATAG
* * * *
7464706 GGGGTAGACGCGATTGATAAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
1 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
*
7464771 CGATTATTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
66 CGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
* * * *
7464814 GGGGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAA-AGACTAGGGAGCTGAC
1 GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGA-AATAGGGGGCAGAC
*
7464878 GCGATTTTTGAAGAT
65 GCGATTGTTGAAGAT
7464893 GTTCGAGTTC
Statistics
Matches: 375, Mismatches: 27, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
107 1 0.00
108 272 0.73
109 2 0.01
110 100 0.27
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (108 bp):
GGGGCAGACGCGATCGTTGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACG
CGATTGTTGAAGATTGTGGGTCTTATACTCTCTGAAGAAATAG
Found at i:7464945 original size:108 final size:108
Alignment explanation
Indices: 7464114--7464956 Score: 785
Period size: 108 Copynumber: 7.6 Consensus size: 108
7464104 TGAAGCAAAA
* * * * *
7464114 GAAGATTGTTCGAGACTTATACTCTCTGAAGAAATAGAGGGCAGACGCGATCGTT-GAAGATTGT
1 GAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAC-AT-ATTATAAGATTGT
* **
7464178 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGGCGCGATCGTT
63 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
*
7464224 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGAC-GATATTGATAAAGATTGT
1 GAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACATATT-AT-AAGATTGT
*
7464288 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGATGCGATTGA-T
63 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATT
* * *
7464334 GAAGAT-TGT-GGGTCTTATACACTCTGAAGAAATAGGGGGCAGAAGTGGGGCAGAAGTGATCGT
1 GAAGATGT-TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAG-A------CA-CA-T-AT--T
*
7464397 -TGAGGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA-T
53 AT-AAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATT
* * * *
7464453 GAAGAT-TGT-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT-GAAGATTGT
1 GAAGATGT-TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAC-AT-ATTATAAGATTGT
**
7464515 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACATGATTGA-T
63 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATT
* * * **
7464561 GAAGAT-TGT-GGGTCTTATACTCTCTGAAGAAATAGGGGGGAGACGCGAT-CGATGAAGATTGT
1 GAAGATGT-TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAC-ATATTAT-AAGATTGT
* **
7464623 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTT
63 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
* * *
7464669 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGTAGACGCGAT-TGATAAAGATTGT
1 GAAGA-TGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAC-ATATTAT-AAGATTGT
7464733 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
63 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
* * *
7464779 GAAGAT-TGT-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATCGTT-GAAGATTGT
1 GAAGATGT-TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACAC-AT-ATTATAAGATTGT
* * * *
7464841 TCGAGTCTTATACTCTCTGAA-AGACTAGGGAGCTGACGCGATTTTT
63 TCGAGTCTTATACTCTCTGAAGA-AATAGGGGGCAGACGCGATTATT
* * ** *
7464887 GAAGATGTTCGAGT-TCTATTCTC-CTGAA-AGAATATGGAACAGACACATATTCATAAGATTTT
1 GAAGATGTTCGAGTCT-TATACTCTCTGAAGA-AATAGGGGGCAGACACATATT-ATAAGATTGT
*
7464949 TCAAGTCT
63 TCGAGTCT
7464957 CACTCGCCCT
Statistics
Matches: 642, Mismatches: 56, Indels: 72
0.83 0.07 0.09
Matches are distributed among these distances:
106 2 0.00
107 6 0.01
108 314 0.49
109 18 0.03
110 197 0.31
111 2 0.00
112 2 0.00
115 1 0.00
117 1 0.00
118 2 0.00
119 96 0.15
121 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (108 bp):
GAAGATGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACATATTATAAGATTGTTCG
AGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATT
Found at i:7468011 original size:13 final size:13
Alignment explanation
Indices: 7467993--7468017 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7467983 GTAATAAACA
7467993 AAATTAACAAAAT
1 AAATTAACAAAAT
7468006 AAATTAACAAAA
1 AAATTAACAAAA
7468018 AATCCAACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATTAACAAAAT
Found at i:7470362 original size:17 final size:18
Alignment explanation
Indices: 7470330--7470363 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7470320 TAGTTAAATA
7470330 AAATACTAACAAAATATT
1 AAATACTAACAAAATATT
*
7470348 AAATA-TAATAAAATAT
1 AAATACTAACAAAATAT
7470364 ACCTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATACTAACAAAATATT
Found at i:7470406 original size:20 final size:20
Alignment explanation
Indices: 7470377--7470418 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7470367 TTAAAATCTA
* *
7470377 TGAGATAAGTTAAGAGTATT
1 TGAGAGAAGTTAAGAGGATT
*
7470397 TGAGAGAAGTTGAGAGGATT
1 TGAGAGAAGTTAAGAGGATT
7470417 TG
1 TG
7470419 GTGTGATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.31
Consensus pattern (20 bp):
TGAGAGAAGTTAAGAGGATT
Found at i:7476864 original size:10 final size:10
Alignment explanation
Indices: 7476849--7476923 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
7476839 CATTTAATAA
7476849 ATAAACGAAC
1 ATAAACGAAC
7476859 ATAAACGAAC
1 ATAAACGAAC
7476869 ----ACGAAC
1 ATAAACGAAC
7476875 ATAAACGAAC
1 ATAAACGAAC
** *
7476885 ACGAAC-ATAA
1 ATAAACGA-AC
7476895 ATGAACACGAAC
1 AT-AA-ACGAAC
*
7476907 ATAAACCAAC
1 ATAAACGAAC
7476917 ATAAACG
1 ATAAACG
7476924 TTGGAGACCC
Statistics
Matches: 49, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
6 6 0.12
9 1 0.02
10 33 0.67
11 3 0.06
12 5 0.10
13 1 0.02
ACGTcount: A:0.57, C:0.23, G:0.11, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:7476874 original size:16 final size:16
Alignment explanation
Indices: 7476853--7476917 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
7476843 TAATAAATAA
7476853 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
7476869 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
7476885 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
*
7476901 ACGAACATAAACCAAC
1 ACGAACATAAACGAAC
7476917 A
1 A
7476918 TAAACGTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.57, C:0.25, G:0.11, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:7478020 original size:10 final size:10
Alignment explanation
Indices: 7478005--7478076 Score: 54
Period size: 10 Copynumber: 6.4 Consensus size: 10
7477995 ATAAATGAAT
7478005 GAACATAAAC
1 GAACATAAAC
7478015 GAACATAACCGAAC
1 GAACAT-A---AAC
7478029 GAACATAAAC
1 GAACATAAAC
7478039 GAACATAACCGAAC
1 GAACAT-A---AAC
7478053 GAACATAAAC
1 GAACATAAAC
* *
7478063 AAACATAACC
1 GAACATAAAC
7478073 GAAC
1 GAAC
7478077 GAACATAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
10 29 0.57
11 2 0.04
13 2 0.04
14 18 0.35
ACGTcount: A:0.56, C:0.25, G:0.11, T:0.08
Consensus pattern (10 bp):
GAACATAAAC
Found at i:7478029 original size:14 final size:14
Alignment explanation
Indices: 7478012--7478084 Score: 81
Period size: 14 Copynumber: 5.8 Consensus size: 14
7478002 AATGAACATA
7478012 AACGAACATAACCG
1 AACGAACATAACCG
7478026 AACGAACAT-A---
1 AACGAACATAACCG
7478036 AACGAACATAACCG
1 AACGAACATAACCG
7478050 AACGAACAT-A---
1 AACGAACATAACCG
*
7478060 AACAAACATAACCG
1 AACGAACATAACCG
7478074 AACGAACATAA
1 AACGAACATAA
7478085 AAGAACGTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
10 17 0.35
11 2 0.04
13 2 0.04
14 28 0.57
ACGTcount: A:0.56, C:0.25, G:0.11, T:0.08
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:7478032 original size:24 final size:24
Alignment explanation
Indices: 7478005--7478090 Score: 154
Period size: 24 Copynumber: 3.6 Consensus size: 24
7477995 ATAAATGAAT
7478005 GAACATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
7478029 GAACATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
*
7478053 GAACATAAACAAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
*
7478077 GAACATAAAAGAAC
1 GAACATAAACGAAC
7478091 GTTCACGAAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.57, C:0.23, G:0.12, T:0.08
Consensus pattern (24 bp):
GAACATAAACGAACATAACCGAAC
Found at i:7479835 original size:24 final size:24
Alignment explanation
Indices: 7479808--7479857 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7479798 TAAAACAAAA
7479808 AAAGAGAG-AGAAACTATACAAGAT
1 AAAGAGAGAAG-AACTATACAAGAT
* *
7479832 AAAGATAGAAGAACTATTCAAGAT
1 AAAGAGAGAAGAACTATACAAGAT
7479856 AA
1 AA
7479858 GATAAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.58, C:0.08, G:0.18, T:0.16
Consensus pattern (24 bp):
AAAGAGAGAAGAACTATACAAGAT
Found at i:7488848 original size:2 final size:2
Alignment explanation
Indices: 7488841--7488866 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7488831 AAATATTTTC
7488841 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7488867 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7488871 original size:2 final size:2
Alignment explanation
Indices: 7488866--7488890 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7488856 TATATATATA
7488866 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
7488891 CTAAATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:7494400 original size:47 final size:47
Alignment explanation
Indices: 7494305--7494520 Score: 254
Period size: 47 Copynumber: 4.6 Consensus size: 47
7494295 ATACAGTTAC
* * * * * * *
7494305 TCGGTGATTGAACATTACTATCCTACAAGGATGCACCAGCCTGCAAT
1 TCGGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAAT
* * * *
7494352 TCGGTAATTGGACTTTTCCATCCAATAAAGATGTACTAGCCTGTAAT
1 TCGGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAAT
7494399 TCGGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAAT
1 TCGGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAAT
*
7494446 TCGGTGATTGGACTTTACCATCCAA-CAAGTATGCACCAGCCTGTAAT
1 TCGGTGATTGGACTTTACCATCCAATAAAG-ATGCACCAGCCTGTAAT
** * * * *
7494493 TTAGTTATTTGAGTTTACCATTCAATAA
1 TCGGTGATTGGACTTTACCATCCAATAA
7494521 TCATACACCA
Statistics
Matches: 144, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
46 3 0.02
47 140 0.97
48 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (47 bp):
TCGGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAAT
Found at i:7494547 original size:94 final size:94
Alignment explanation
Indices: 7494338--7494548 Score: 228
Period size: 94 Copynumber: 2.2 Consensus size: 94
7494328 TACAAGGATG
* * * * * * *
7494338 CACCAGCCTGCAATTCGGTAATTGGACTTTTCCATCCAATAAAGATGTACTAGCCTGTAATTCGG
1 CACCAGCCTGTAATTCAGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAATTCAG
* *
7494403 TGATTGGACTTTACCATCCAATAAAGATG
66 TGATTGGACTTTACCATCCAATAAACATA
* * *
7494432 CACCAGCCTGTAATTCGGTGATTGGACTTTACCATCCAA-CAAGTATGCACCAGCCTGTAATTTA
1 CACCAGCCTGTAATTCAGTGATTGGACTTTACCATCCAATAAAG-ATGCACCAGCCTGTAATTCA
* * * * *
7494496 GTTATTTGAGTTTACCATTCAATAATCATA
65 GTGATTGGACTTTACCATCCAATAAACATA
*
7494526 CACCAGTCTGT-ATGTCAGTGATT
1 CACCAGCCTGTAAT-TCAGTGATT
7494549 CTTTCACTTC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
93 5 0.05
94 93 0.95
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (94 bp):
CACCAGCCTGTAATTCAGTGATTGGACTTTACCATCCAATAAAGATGCACCAGCCTGTAATTCAG
TGATTGGACTTTACCATCCAATAAACATA
Found at i:7494783 original size:5 final size:5
Alignment explanation
Indices: 7494773--7494798 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7494763 TTTTGAGCCC
7494773 ACCCG ACCCG ACCCG ACCCG ACCCG A
1 ACCCG ACCCG ACCCG ACCCG ACCCG A
7494799 GAAGAAGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.19, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:7498461 original size:13 final size:14
Alignment explanation
Indices: 7498435--7498463 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7498425 AACAATTATT
7498435 ATAAGCTAAAGAAA
1 ATAAGCTAAAGAAA
7498449 ATAAGCT-AAGAAA
1 ATAAGCTAAAGAAA
7498462 AT
1 AT
7498464 TGTTTACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.62, C:0.07, G:0.14, T:0.17
Consensus pattern (14 bp):
ATAAGCTAAAGAAA
Found at i:7509623 original size:20 final size:20
Alignment explanation
Indices: 7509583--7509621 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7509573 CATTGTAGGA
*
7509583 ATTTATGGCTTCGACAAAAG
1 ATTTATGGCTTCAACAAAAG
7509603 ATTTCATGGCTTCAACAAA
1 ATTT-ATGGCTTCAACAAA
7509622 GACCTTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
ATTTATGGCTTCAACAAAAG
Found at i:7518856 original size:11 final size:12
Alignment explanation
Indices: 7518823--7518854 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
7518813 TCACCTTCAA
7518823 GATTTTTTTAAG
1 GATTTTTTTAAG
7518835 GATTTTTTTAAG
1 GATTTTTTTAAG
7518847 GATTTTTT
1 GATTTTTT
7518855 AAAATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (12 bp):
GATTTTTTTAAG
Found at i:7531525 original size:36 final size:36
Alignment explanation
Indices: 7531476--7531579 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 36
7531466 TAGGAGTGGA
* *
7531476 TAGCTGTTAAAGATAAGGTTGGAATTTGAATTTTAT
1 TAGCTGCTAAAGATAAGGTTGGAATTTAAATTTTAT
* * * *
7531512 TAGTTGCTGAAGATAAGGCTGAAATTTAAATTTTAT
1 TAGCTGCTAAAGATAAGGTTGGAATTTAAATTTTAT
*
7531548 TAGCTGCTAAAAATAAGGTTGGAATTTAAATT
1 TAGCTGCTAAAGATAAGGTTGGAATTTAAATT
7531580 CTAAATAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.38
Consensus pattern (36 bp):
TAGCTGCTAAAGATAAGGTTGGAATTTAAATTTTAT
Found at i:7536832 original size:20 final size:21
Alignment explanation
Indices: 7536780--7536840 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
7536770 TTCCCCTGTG
7536780 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
*
7536803 GGGGGAATCGGTTCCCTC-AT
1 GGGGGAATCGGTTCCCTCAAA
* *
7536823 GGGGGTATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
7536841 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 3 0.09
23 13 0.37
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:7540670 original size:22 final size:21
Alignment explanation
Indices: 7540628--7540667 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7540618 GAGTTTATTT
*
7540628 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7540649 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7540668 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7543088 original size:19 final size:20
Alignment explanation
Indices: 7543064--7543111 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
7543054 AATGATTTTC
* *
7543064 TTTTGAAAACTAAAATG-GA
1 TTTTGAAAACCAAAATGAAA
7543083 TTTTGAAAACCAAAATGAAA
1 TTTTGAAAACCAAAATGAAA
7543103 TTTTGAAAA
1 TTTTGAAAA
7543112 ATGATTTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.31
Consensus pattern (20 bp):
TTTTGAAAACCAAAATGAAA
Found at i:7545582 original size:3 final size:3
Alignment explanation
Indices: 7545570--7545647 Score: 72
Period size: 3 Copynumber: 26.3 Consensus size: 3
7545560 TTTTTCAACC
* *
7545570 ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT A-A AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** *
7545615 ATT ATT ATT ACAA AAT ATT ATT ATT ATTT ATT A
1 ATT ATT ATT A-TT ATT ATT ATT ATT A-TT ATT A
7545648 CAAACCCAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
2 5 0.08
3 54 0.86
4 4 0.06
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:7545614 original size:22 final size:22
Alignment explanation
Indices: 7545586--7545651 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
7545576 TTATTATTAT
**
7545586 TATTATTATTATTATTTTAAAA
1 TATTATTATTATTATTACAAAA
7545608 TATTATTATTATTATTACAAAA
1 TATTATTATTATTATTACAAAA
7545630 TATTATTATTATTTATTACAAA
1 TATTATTATTA-TTATTACAAA
7545652 CCCAATACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
22 31 0.76
23 10 0.24
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTATTATTATTATTACAAAA
Found at i:7550194 original size:174 final size:174
Alignment explanation
Indices: 7549867--7550214 Score: 457
Period size: 174 Copynumber: 2.0 Consensus size: 174
7549857 TGATAGTGTG
* *
7549867 GTGGTGGAGCCATTCCTAGGTAGAAGAAAGGGGTTGGGCCTGAAAGCATCAATCATATTTCTCTC
1 GTGGTGGAGCCATTCCTAGGTAGAAGAAAGGGGTTGGGCCCGAAAGCATCAATCAGATTTCTCTC
* * * * *
7549932 CCTTAGTAGATTTCCTTGACAAGTTCAAGAATCCAAAACCTCACAGAAGTAAAGACTTGATTGAG
66 CATTAGCAGATTTCCTTCACAAGTGCAAGAATCCAAAACCTCACAGAAGGAAAGACTTGATTGAG
** * *
7549997 ACTCTATGAAATATAAAAGATACCGAAGTATTCTGGAAAGCGTA
131 ACTCTACAAAATATAAAAGATACCGAAGTAGTCTAGAAAGCGTA
** *
7550041 GTGGTGGAGCCATTCCT-GGATAGTCGAAAGGGGTTGGGCCCGAAAGCATCAGTCAGATTTCTCT
1 GTGGTGGAGCCATTCCTAGG-TAGAAGAAAGGGGTTGGGCCCGAAAGCATCAATCAGATTTCTCT
* * ** *
7550105 CCATTAGCAGATTTCCTTCACAAGTGCAAGATTCCATAACCTCGTAGAAGGAAAGA-TATGTTTG
65 CCATTAGCAGATTTCCTTCACAAGTGCAAGAATCCAAAACCTCACAGAAGGAAAGACT-TGATTG
* * * *
7550169 AGGCTCTACAAAATATGATAGATACCGAAGTAGTCTAGCAAGCGTA
129 AGACTCTACAAAATATAAAAGATACCGAAGTAGTCTAGAAAGCGTA
7550215 TTTGATAACT
Statistics
Matches: 149, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
173 3 0.02
174 146 0.98
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (174 bp):
GTGGTGGAGCCATTCCTAGGTAGAAGAAAGGGGTTGGGCCCGAAAGCATCAATCAGATTTCTCTC
CATTAGCAGATTTCCTTCACAAGTGCAAGAATCCAAAACCTCACAGAAGGAAAGACTTGATTGAG
ACTCTACAAAATATAAAAGATACCGAAGTAGTCTAGAAAGCGTA
Found at i:7550415 original size:27 final size:26
Alignment explanation
Indices: 7550385--7550443 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
7550375 GAAAAGATTT
*
7550385 AATAAAA-TAAAATAGATAATAATAATA
1 AATAAAAGGAAAATA-ATAA-AATAATA
7550412 AATAAAAGGGAAAATAATAAAATAATA
1 AATAAAA-GGAAAATAATAAAATAATA
7550439 AATAA
1 AATAA
7550444 TAGTAGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 19 0.66
28 4 0.14
29 6 0.21
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (26 bp):
AATAAAAGGAAAATAATAAAATAATA
Found at i:7550427 original size:22 final size:22
Alignment explanation
Indices: 7550384--7550440 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7550374 TGAAAAGATT
* *
7550384 TAATAAAATAAAATAGATAATAA
1 TAAT-AAATAAAAGAGAAAATAA
*
7550407 TAATAAATAAAAGGGAAAATAA
1 TAATAAATAAAAGAGAAAATAA
*
7550429 TAAAATAATAAA
1 TAATA-AATAAA
7550441 TAATAGTAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 19 0.66
23 10 0.34
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (22 bp):
TAATAAATAAAAGAGAAAATAA
Found at i:7551203 original size:71 final size:71
Alignment explanation
Indices: 7551120--7551379 Score: 362
Period size: 70 Copynumber: 3.6 Consensus size: 71
7551110 TAAAACATCT
* *
7551120 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATTCCTAAAAAAATAATATTTAAAA
1 TAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAAAAATAATATTTAAAA
7551184 TAAATTC
65 TAAATTC
*
7551191 TAAATCCTAATTAAAATAATAAAACCTATTTAAACTAAAATACCT-AAAAAATAATATTTAAAAT
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAAAAATAATATTTAAAAT
*
7551255 AAATTA
66 AAATTC
* *
7551261 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATATAATATAA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAA-AAATA-AT-AT-TTA
*
7551326 AAATAATATCC
62 AAATAA-ATTC
* * *
7551337 TAAAACTTAATTAATATACTAAAACCTATTTAAACTAAAATAC
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATAC
7551380 AAAGATAAAA
Statistics
Matches: 170, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
70 73 0.43
71 39 0.23
72 4 0.02
73 2 0.01
74 2 0.01
75 8 0.05
76 42 0.25
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (71 bp):
TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAAAAATAATATTTAAAAT
AAATTC
Found at i:7551208 original size:35 final size:35
Alignment explanation
Indices: 7551168--7551278 Score: 101
Period size: 35 Copynumber: 3.2 Consensus size: 35
7551158 AATTCCTAAA
7551168 AAAATAATATTTAAAATAAATTCTAAATCCTAATT
1 AAAATAATATTTAAAATAAATTCTAAATCCTAATT
7551203 AAAATAATA---AAACCTATTTAAA--CTAAAATACCTAA--
1 AAAATAATATTTAAA---A--TAAATTCT-AAAT-CCTAATT
*
7551238 AAAATAATATTTAAAATAAATTATAAATCCTAATT
1 AAAATAATATTTAAAATAAATTCTAAATCCTAATT
7551273 AAAATA
1 AAAATA
7551279 CTAAAACCTA
Statistics
Matches: 61, Mismatches: 1, Indels: 28
0.68 0.01 0.31
Matches are distributed among these distances:
32 3 0.05
33 9 0.15
34 4 0.07
35 29 0.48
36 4 0.07
37 9 0.15
38 3 0.05
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (35 bp):
AAAATAATATTTAAAATAAATTCTAAATCCTAATT
Found at i:7551213 original size:19 final size:19
Alignment explanation
Indices: 7551191--7551294 Score: 53
Period size: 19 Copynumber: 5.8 Consensus size: 19
7551181 AAATAAATTC
7551191 TAAATCCTAATTAAAATAA
1 TAAATCCTAATTAAAATAA
* * *
7551210 TAAAACCTATTTAAACT-A
1 TAAATCCTAATTAAAATAA
7551228 -AAATACCTAA--AAAATAA
1 TAAAT-CCTAATTAAAATAA
* * *
7551245 T--AT-TTAA-AATAAATTA
1 TAAATCCTAATTA-AAATAA
*
7551261 TAAATCCTAATTAAAATAC
1 TAAATCCTAATTAAAATAA
* *
7551280 TAAAACCTATTTAAA
1 TAAATCCTAATTAAA
7551295 CTAAAATACC
Statistics
Matches: 62, Mismatches: 14, Indels: 18
0.66 0.15 0.19
Matches are distributed among these distances:
14 3 0.05
15 1 0.02
16 12 0.19
17 4 0.06
18 7 0.11
19 34 0.55
20 1 0.02
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAATCCTAATTAAAATAA
Found at i:7551274 original size:23 final size:23
Alignment explanation
Indices: 7551178--7551278 Score: 66
Period size: 23 Copynumber: 4.3 Consensus size: 23
7551168 AAAATAATAT
*
7551178 TTAAAATAAATTCTAAATCCTAA
1 TTAAAATAAATTATAAATCCTAA
*
7551201 TTAAAAT-AA-TA-AAA-CCTAT
1 TTAAAATAAATTATAAATCCTAA
* * ** *
7551220 TTAAACTAAAATACCTAAAAAATAATAT
1 TTAAAAT-AAAT---T-ATAAATCCTAA
7551248 TTAAAATAAATTATAAATCCTAA
1 TTAAAATAAATTATAAATCCTAA
7551271 TTAAAATA
1 TTAAAATA
7551279 CTAAAACCTA
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
19 10 0.17
20 3 0.05
21 3 0.05
22 2 0.03
23 22 0.37
24 1 0.02
25 1 0.02
26 1 0.02
27 7 0.12
28 9 0.15
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (23 bp):
TTAAAATAAATTATAAATCCTAA
Found at i:7551352 original size:141 final size:142
Alignment explanation
Indices: 7551120--7551379 Score: 334
Period size: 141 Copynumber: 1.8 Consensus size: 142
7551110 TAAAACATCT
* * *
7551120 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATTCCTAAAAAAATAATATTTAAAAT
1 TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAAAAAGAATATTAAAAAT
*
7551185 AAATTCTAAATCCTAATT-AA-AATA-A-TAAAACCTATTTAAACTAAAATACCTAAAAAATAAT
66 AAATCCTAAA--C-AATTAAATAATATACTAAAACCTATTTAAACTAAAATACCTAAAAAATAAT
7551246 ATTTAAAATAAATTA
128 ATTTAAAATAAATTA
*
7551261 TAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAACAAAGATATAATATA
1 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATACCTAAAA-AAAGA-AT-AT-TA
* *
7551325 AAAATAATATCCTAAA-ACTTAATTAATATACTAAAACCTATTTAAACTAAAATAC
61 AAAATAA-ATCCTAAACAATTAAATAATATACTAAAACCTATTTAAACTAAAATAC
7551380 AAAGATAAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
140 5 0.05
141 41 0.40
142 7 0.07
143 3 0.03
144 6 0.06
145 9 0.09
146 31 0.30
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (142 bp):
TAAATCCTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAAAAAGAATATTAAAAAT
AAATCCTAAACAATTAAATAATATACTAAAACCTATTTAAACTAAAATACCTAAAAAATAATATT
TAAAATAAATTA
Found at i:7551369 original size:19 final size:19
Alignment explanation
Indices: 7551329--7551369 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7551319 AATATAAAAA
* *
7551329 TAATATCCTAAAACTTAAT
1 TAATATACTAAAACCTAAT
*
7551348 TAATATACTAAAACCTATT
1 TAATATACTAAAACCTAAT
7551367 TAA
1 TAA
7551370 ACTAAAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (19 bp):
TAATATACTAAAACCTAAT
Found at i:7551403 original size:76 final size:73
Alignment explanation
Indices: 7551120--7551415 Score: 327
Period size: 70 Copynumber: 4.1 Consensus size: 73
7551110 TAAAACATCT
* * **
7551120 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAACTAAAATTCCTAA-AAAA-ATAATATTTAA
1 TAAATCCTAATTAAAATAC-TAAAACCTATTTAAACTAAAATACAAAATAAAATATAATATTTAA
*
7551182 AATAAATTC
65 AATAAATCC
* * *
7551191 TAAATCCTAATTAAAATAATAAAACCTATTTAAACTAAAATAC---CTAAAAAATAATATTTAAA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAATAAAATATAATATTTAAA
**
7551253 ATAAATTA
66 ATAAATCC
* *
7551261 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATATAATA-TA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATA-C-AAAATAAA-ATATAATATTT
7551325 AAAATAATATCC
63 AAAATAA-ATCC
* * * *
7551337 TAAAACTTAATTAATATACTAAAACCTATTTAAACTAAAATACAAAGATAAAATATAATGTTTAA
1 TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAA-ATAAAATATAATATTTAA
*
7551402 AATATTATCC
65 AATA-AATCC
7551412 TAAA
1 TAAA
7551416 CTTGAGTTTA
Statistics
Matches: 193, Mismatches: 19, Indels: 22
0.82 0.08 0.09
Matches are distributed among these distances:
69 4 0.02
70 65 0.34
71 35 0.18
74 10 0.05
75 31 0.16
76 48 0.25
ACGTcount: A:0.56, C:0.12, G:0.01, T:0.31
Consensus pattern (73 bp):
TAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAATAAAATATAATATTTAAA
ATAAATCC
Found at i:7553067 original size:5 final size:5
Alignment explanation
Indices: 7553057--7553169 Score: 104
Period size: 5 Copynumber: 21.8 Consensus size: 5
7553047 TGTTTAGAGA
* *
7553057 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT ATAAT GAAAAT AAAGTTT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA--AT
** * *
7553109 GCTAA- AAAAT AAAAT AAAAAT AAAAT GAAAT AAAAT GAAAAT GAAAT
1 -AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT
7553156 AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAA
7553170 AAATAGAACG
Statistics
Matches: 88, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
4 6 0.07
5 66 0.75
6 14 0.16
7 1 0.01
8 1 0.01
ACGTcount: A:0.73, C:0.01, G:0.05, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:7555338 original size:13 final size:13
Alignment explanation
Indices: 7555320--7555384 Score: 85
Period size: 13 Copynumber: 5.0 Consensus size: 13
7555310 GTCATAAATC
*
7555320 TATGACGCACATT
1 TATGACGCGCATT
* *
7555333 TATGACACGTATT
1 TATGACGCGCATT
*
7555346 TATGACACGCATT
1 TATGACGCGCATT
7555359 TATGACGCGCATT
1 TATGACGCGCATT
*
7555372 TATGACGCTCATT
1 TATGACGCGCATT
7555385 GCGCGTCATT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:7555455 original size:85 final size:85
Alignment explanation
Indices: 7555356--7555516 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 85
7555346 TATGACACGC
* *
7555356 ATTTATGACGCGCATTTATGACGCT-CATTGCGCGTCATTGAAGCCCCCGTCATAAATG-AAGAT
1 ATTTATGACACGCATGTATGAC-CTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAG-T
7555419 GACACACATTTGTGTGTCATAA
64 GACACACATTTGTGTGTCATAA
* * * **
7555441 ATTTATGACACGCATGTATTACTTACATTGCGTGTCATTGAAGCCTTCGTCATAAATGAAAGTGA
1 ATTTATGACACGCATGTATGACCTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAGTGA
*
7555506 CATACATTTGT
66 CACACATTTGT
7555517 ATGACTTACA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
84 1 0.02
85 62 0.94
86 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (85 bp):
ATTTATGACACGCATGTATGACCTACATTGCGCGTCATTGAAGCCCCCGTCATAAATGAAAGTGA
CACACATTTGTGTGTCATAA
Found at i:7563511 original size:24 final size:23
Alignment explanation
Indices: 7563484--7563536 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
7563474 GAAAAGATTT
*
7563484 AATAAAA-TAAAATACATAATAATA
1 AATAAAAGGAAAATA-ATAA-AATA
7563508 AATAAAAGGGAAAATAATAAAATA
1 AATAAAA-GGAAAATAATAAAATA
7563532 AATAA
1 AATAA
7563537 TAGTAGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 16 0.62
25 4 0.15
26 6 0.23
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.21
Consensus pattern (23 bp):
AATAAAAGGAAAATAATAAAATA
Found at i:7564087 original size:21 final size:17
Alignment explanation
Indices: 7564045--7564079 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7564035 AAATTAGCAA
7564045 AGCATGACCAAAATCAT
1 AGCATGACCAAAATCAT
7564062 AGCATGACCAAAATCAT
1 AGCATGACCAAAATCAT
7564079 A
1 A
7564080 CTTAGCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.17
Consensus pattern (17 bp):
AGCATGACCAAAATCAT
Found at i:7564440 original size:76 final size:75
Alignment explanation
Indices: 7564228--7564452 Score: 216
Period size: 76 Copynumber: 3.1 Consensus size: 75
7564218 TAAAACATCT
* *
7564228 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAA--ATAAATACC----TAAAAAATAATATTT
1 TAAAACCTAATTAAAATAC-TAAAACCTATTTAAACCA-AAATACCAAAATAAAAAATAATATTT
*
7564286 AAAATAATATTC
64 AAAATAATATCC
* * * *
7564298 TAAATCCTAATTAAAATACTAAAACCTATTTAAACCAAAATACCAAAA-ACAAAGATAAAATATA
1 TAAAACCTAATTAAAATACTAAAACCTATTTAAACCAAAATACCAAAATA-AAAAATAATAT-TT
7564362 AAAATAATATCC
64 AAAATAATATCC
** * * * *
7564374 TAAAAGTTAATTAAAATACTAAAACCTATTTAGACTAAAATA-CAAAGATAAAATATAATGTTTA
1 TAAAACCTAATTAAAATACTAAAACCTATTTAAACCAAAATACCAAA-ATAAAAAATAATATTTA
*
7564438 AAATATTATCC
65 AAATAATATCC
7564449 TAAA
1 TAAA
7564453 CTTGAGTTTA
Statistics
Matches: 129, Mismatches: 15, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
69 5 0.04
70 27 0.21
71 7 0.05
72 1 0.01
74 1 0.01
75 29 0.22
76 58 0.45
77 1 0.01
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (75 bp):
TAAAACCTAATTAAAATACTAAAACCTATTTAAACCAAAATACCAAAATAAAAAATAATATTTAA
AATAATATCC
Found at i:7572477 original size:29 final size:29
Alignment explanation
Indices: 7572432--7572521 Score: 162
Period size: 29 Copynumber: 3.1 Consensus size: 29
7572422 AGTCCATTAT
* *
7572432 TCTTTTACTCAACAGTGTTTAATCGTTCA
1 TCTTTTACTCAATAGTGTTTAACCGTTCA
7572461 TCTTTTACTCAATAGTGTTTAACCGTTCA
1 TCTTTTACTCAATAGTGTTTAACCGTTCA
7572490 TCTTTTACTCAATAGTGTTTAACCGTTCA
1 TCTTTTACTCAATAGTGTTTAACCGTTCA
7572519 TCT
1 TCT
7572522 AACTAGCATA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.46
Consensus pattern (29 bp):
TCTTTTACTCAATAGTGTTTAACCGTTCA
Found at i:7572970 original size:47 final size:47
Alignment explanation
Indices: 7572919--7573025 Score: 142
Period size: 47 Copynumber: 2.3 Consensus size: 47
7572909 CATTTATGAC
* *
7572919 ATCCTTTCATGCGTTAATACATCCTTTCATGCATTTTTAGTTATGGA
1 ATCCTTTTATGCCTTAATACATCCTTTCATGCATTTTTAGTTATGGA
* * * * * *
7572966 ATCCTTTTATGCCTTAGTGCATTCTTTTATGTATTTTTAGTTATGGC
1 ATCCTTTTATGCCTTAATACATCCTTTCATGCATTTTTAGTTATGGA
7573013 ATCCTTTTATGCC
1 ATCCTTTTATGCC
7573026 AATAATGCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (47 bp):
ATCCTTTTATGCCTTAATACATCCTTTCATGCATTTTTAGTTATGGA
Found at i:7573065 original size:34 final size:34
Alignment explanation
Indices: 7573016--7573080 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
7573006 TTATGGCATC
7573016 CTTTTATGCCAATAATGCACCCATATGCATTATT
1 CTTTTATGCCAATAATGCACCCATATGCATTATT
7573050 CTTTTATGCTC-ATAATGCACCCATATGCATT
1 CTTTTATGC-CAATAATGCACCCATATGCATT
7573081 TCAGCTACAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (34 bp):
CTTTTATGCCAATAATGCACCCATATGCATTATT
Found at i:7573237 original size:13 final size:13
Alignment explanation
Indices: 7573219--7573263 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
7573209 GTCATAAATC
7573219 TATGACGCGCATT
1 TATGACGCGCATT
* *
7573232 TATGACACACATT
1 TATGACGCGCATT
7573245 TATGACGCGCATT
1 TATGACGCGCATT
7573258 TATGAC
1 TATGAC
7573264 ACTCATTGCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:7573248 original size:26 final size:26
Alignment explanation
Indices: 7573219--7573270 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7573209 GTCATAAATC
7573219 TATGACGCGCATTTATGACACACATT
1 TATGACGCGCATTTATGACACACATT
*
7573245 TATGACGCGCATTTATGACACTCATT
1 TATGACGCGCATTTATGACACACATT
7573271 GCGCGACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (26 bp):
TATGACGCGCATTTATGACACACATT
Found at i:7573270 original size:13 final size:13
Alignment explanation
Indices: 7573228--7573270 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
7573218 CTATGACGCG
7573228 CATTTATGACACA
1 CATTTATGACACA
* *
7573241 CATTTATGACGCG
1 CATTTATGACACA
*
7573254 CATTTATGACACT
1 CATTTATGACACA
7573267 CATT
1 CATT
7573271 GCGCGACATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (13 bp):
CATTTATGACACA
Found at i:7574645 original size:90 final size:88
Alignment explanation
Indices: 7574493--7574662 Score: 304
Period size: 90 Copynumber: 1.9 Consensus size: 88
7574483 ACACACCCTT
7574493 TTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATATATATTTA
1 TTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATATATATTTA
*
7574558 ATTAATTAGAATTTAATAATCCTC
66 ATTAATT-GAAATTAATAATCCTC
*
7574582 TTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATATATATTT
1 TTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATATATATTT
7574647 AATTAATTGAAATTAA
65 AATTAATTGAAATTAA
7574663 ATATTCAGGA
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
89 37 0.47
90 41 0.53
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.44
Consensus pattern (88 bp):
TTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATATATATTTA
ATTAATTGAAATTAATAATCCTC
Found at i:7574652 original size:20 final size:21
Alignment explanation
Indices: 7574627--7574696 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 21
7574617 TATTATTTCA
7574627 AATTAATT-AAATATATATTT
1 AATTAATTAAAATATATATTT
* * *
7574647 AATTAATTGAAATTAAATATTC
1 AATTAATT-AAAATATATATTT
*
7574669 AGGATT-ATTAAAACATATATTT
1 A--ATTAATTAAAATATATATTT
7574691 AATTAA
1 AATTAA
7574697 CTCTAGACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
20 11 0.29
21 1 0.03
22 20 0.53
23 3 0.08
24 3 0.08
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (21 bp):
AATTAATTAAAATATATATTT
Found at i:7580931 original size:20 final size:20
Alignment explanation
Indices: 7580906--7580962 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
7580896 CCGTACAGGC
*
7580906 TGATAAAATTGAGGTGTAGA
1 TGATAAAATTGAGGTGCAGA
*
7580926 TGATAAAATTGATGTGCAGA
1 TGATAAAATTGAGGTGCAGA
*
7580946 TGATAAAATTGATGTGC
1 TGATAAAATTGAGGTGC
7580963 CAGCTGGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.32
Consensus pattern (20 bp):
TGATAAAATTGAGGTGCAGA
Found at i:7587158 original size:3 final size:3
Alignment explanation
Indices: 7587150--7587220 Score: 67
Period size: 3 Copynumber: 24.0 Consensus size: 3
7587140 TCGTCCGTTC
*
7587150 TTA TTA TTA TTA TTA -TA TTA TTA TTA -TA TAA TTA TATA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * *
7587193 CTA CTA TTA TTA TATA TTA TAA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA
7587221 AATATTACAA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
2 6 0.10
3 46 0.79
4 6 0.10
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:7587170 original size:11 final size:11
Alignment explanation
Indices: 7587154--7587218 Score: 73
Period size: 11 Copynumber: 6.1 Consensus size: 11
7587144 CCGTTCTTAT
7587154 TATTATTATTA
1 TATTATTATTA
7587165 TATTATTATTA
1 TATTATTATTA
*
7587176 TATAATTA-TA
1 TATTATTATTA
*
7587186 TATTA-TACTA
1 TATTATTATTA
7587196 CTATTATTA-TA
1 -TATTATTATTA
*
7587207 TATTATAATTA
1 TATTATTATTA
7587218 T
1 T
7587219 TAAATATTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.04
10 15 0.32
11 28 0.60
12 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TATTATTATTA
Found at i:7587189 original size:21 final size:20
Alignment explanation
Indices: 7587151--7587220 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 20
7587141 CGTCCGTTCT
7587151 TATTATTATTATTATATTAT-
1 TATTATTATTA-TATATTATA
7587171 TATTATATAATTATATATTATA
1 TATTAT-T-ATTATATATTATA
*
7587193 CTACTATTATTATATATTATA
1 -TATTATTATTATATATTATA
7587214 -ATTATTA
1 TATTATTA
7587221 AATATTACAA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
19 6 0.14
20 6 0.14
21 22 0.50
22 5 0.11
23 5 0.11
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATTATTATATATTATA
Found at i:7596840 original size:26 final size:24
Alignment explanation
Indices: 7596778--7596840 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 24
7596768 CATTTTAATC
7596778 AAAATAT-TAATTATTAAAATATTT
1 AAAATATAT-ATTATTAAAATATTT
*
7596802 AAAATATAT-TTATTAATAT-TTCT
1 AAAATATATATTATTAAAATATT-T
7596825 AATAATATAATATTAT
1 AA-AATAT-ATATTAT
7596841 ATTTTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 2 0.06
23 12 0.36
24 12 0.36
25 3 0.09
26 4 0.12
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
AAAATATATATTATTAAAATATTT
Found at i:7596842 original size:22 final size:23
Alignment explanation
Indices: 7596812--7596858 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
7596802 AAAATATATT
7596812 TATTAATATTTCTAATAATATAA
1 TATTAATATTTCTAATAATATAA
* *
7596835 TATT-ATATTTTTAATATTATAA
1 TATTAATATTTCTAATAATATAA
7596857 TA
1 TA
7596859 AAATAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAATATTTCTAATAATATAA
Found at i:7596872 original size:32 final size:32
Alignment explanation
Indices: 7596806--7596885 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
7596796 ATATTTAAAA
* *
7596806 TATATTTATTAATATTTCTAATAATATAATAT
1 TATATTTATTAATATTTATAATAAAATAATAT
7596838 TATATTT-TTAATA-TTATAATAAAATAATCAAT
1 TATATTTATTAATATTTATAATAAAATAAT--AT
*
7596870 TATATTATAATAATAT
1 TATATT-TATTAATAT
7596886 AAGATATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
30 13 0.32
31 6 0.15
32 15 0.38
33 1 0.03
34 5 0.12
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAAAATAATAT
Found at i:7599286 original size:20 final size:19
Alignment explanation
Indices: 7599240--7599294 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
7599230 ACTGATTCAA
7599240 GTGGTATCGATACCAAGAG
1 GTGGTATCGATACCAAGAG
* **
7599259 GGGAGTATCGATACCGTGAG
1 GTG-GTATCGATACCAAGAG
*
7599279 GATGGTATCAATACCA
1 G-TGGTATCGATACCA
7599295 TTGAGCATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 2 0.07
20 25 0.89
21 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (19 bp):
GTGGTATCGATACCAAGAG
Found at i:7600224 original size:68 final size:67
Alignment explanation
Indices: 7600019--7600206 Score: 288
Period size: 67 Copynumber: 2.8 Consensus size: 67
7600009 TAAAAGATTA
* *
7600019 TGAGGCCTAACTGTGCATTGACAAAAAGGTGTCAATTGTGCCAATTAGATGAAAGGCTAAGTGCC
1 TGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTGTGCCAGTTAGATGAAAGGCTAAGTGCC
7600084 TT
66 TT
* **
7600086 TGAGGCCTAACTGTGCATTGACAGAAATGTGTCAATTGTGTTAGTTAGATGAAAGGCTAAGTGCC
1 TGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTGTGCCAGTTAGATGAAAGGCTAAGTGCC
7600151 TT
66 TT
* *
7600153 TGAGGCCTAGA-TGTGCATTTGTCAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 TGAGGCCTA-ACTGTGCA-TTGACAGAAAGGTGTCAATTGTGCCAGTTAGATGAA
7600207 TGGTTAAAGA
Statistics
Matches: 109, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
67 77 0.71
68 32 0.29
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (67 bp):
TGAGGCCTAACTGTGCATTGACAGAAAGGTGTCAATTGTGCCAGTTAGATGAAAGGCTAAGTGCC
TT
Found at i:7600293 original size:81 final size:81
Alignment explanation
Indices: 7600156--7600684 Score: 705
Period size: 81 Copynumber: 6.6 Consensus size: 81
7600146 GTGCCTTTGA
* * * *
7600156 GGCCTAGATGTGCATTTGTCAGAAAGGTGTCAATTATGCCAGTTAGATGAATGGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
7600221 TGAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* * * * * * *
7600237 GACCTAGTTGTGCATTTGGCATAAATGTGTCAATTATGACAGTTATATGAACGGTTAAGGACCAT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
7600302 TGAGTAAAAG---AAT
66 TGAGTAAAAGATAAAT
* * * * * **
7600315 GGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGCTAGATGAACAGTTAAAGATTGT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
7600380 TGAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* *
7600396 GGTCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGAACGT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
7600461 TGAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* *
7600477 GGCCTAGCTTTGCATTTGGCAGAAATGTGTCAATTATGCCAGTAAGATGAACGGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
7600542 TGAGTAAAAAATAAAT
66 TGAGTAAAAGATAAAT
* * * *
7600558 GGCCTAGCTGTGCATTTGGTACAAATGTGTCAATTATGTCAGTTAGATGAACGGTT-AAGACCAT
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
7600622 TGCGTAAAAG----AT
66 TGAGTAAAAGATAAAT
* * * * *
7600634 GGCCTAACTGTGCATTTGGCATAAAAGTGTCAATCATGCAAGTTAGATGAA
1 GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAA
7600685 AGATTAAATG
Statistics
Matches: 393, Mismatches: 52, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
76 46 0.12
78 64 0.16
80 15 0.04
81 268 0.68
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (81 bp):
GGCCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
TGAGTAAAAGATAAAT
Found at i:7600446 original size:159 final size:158
Alignment explanation
Indices: 7600156--7600692 Score: 727
Period size: 159 Copynumber: 3.4 Consensus size: 158
7600146 GTGCCTTTGA
* * **
7600156 GGCCTAGATGTGCATTTGTCAGAAAGGTGTCAATTATGCCAGTTAGATGAATGGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGT
* * * *
7600221 TGAGTAAAAGATAAATGACCTAGTTGTGCATTTGGCATAAATGTGTCAATTATGACAGTTATATG
66 TGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGGCACAAATGTGTCAATTATGACAGTTAGATG
7600286 AACGGTTAAGGACCATTGAGTAAAAGAAT
131 AACGGTTAA-GACCATTGAGTAAAAGAAT
* * * **
7600315 GGCCTAGCTTTGCATTTGACAGAAAGGTGTCAATTATGCCAGCTAGATGAACAGTTAAAGATTGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGT
* * *
7600380 TGAGTAAAAGATAAATGGTCTAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATG
66 TGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGGCACAAATGTGTCAATTATGACAGTTAGATG
* *
7600445 AACGGTTAAAGAACGTTGAGTAAAAGATAAAT
131 AACGGTT-AAGACCATTGAGTAAAAG---AAT
* * * *
7600477 GGCCTAGCTTTGCATTTGGCAGAAATGTGTCAATTATGCCAGTAAGATGAACGGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGT
* * *
7600542 TGAGTAAAAAATAAATGGCCTAGCTGTGCATTTGGTACAAATGTGTCAATTATGTCAGTTAGATG
66 TGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGGCACAAATGTGTCAATTATGACAGTTAGATG
*
7600607 AACGGTTAAGACCATTGCGTAAAAG-AT
131 AACGGTTAAGACCATTGAGTAAAAGAAT
* * * * *
7600634 GGCCTAACTGTGCATTTGGCATAAAAGTGTCAATCATGCAAGTTAGATGAA-AGATTAAA
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAG-TTAAA
7600693 TGCCTTTGGA
Statistics
Matches: 334, Mismatches: 39, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
156 1 0.00
157 51 0.15
159 137 0.41
160 2 0.01
161 15 0.04
162 128 0.38
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (158 bp):
GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGT
TGAGTAAAAGATAAATGGCCTAGCTGTGCATTTGGCACAAATGTGTCAATTATGACAGTTAGATG
AACGGTTAAGACCATTGAGTAAAAGAAT
Found at i:7600843 original size:45 final size:44
Alignment explanation
Indices: 7600793--7601035 Score: 360
Period size: 45 Copynumber: 5.4 Consensus size: 44
7600783 TGTACAACAA
*
7600793 TGCATTACAGGCATGAAATGATGCCATAATTGAAATGCATATGGG
1 TGCATTAC-GGCATGAAAGGATGCCATAATTGAAATGCATATGGG
* *
7600838 TGCATTATCGGCATGAATGGATGCAATAATTGAAATGCATATGGG
1 TGCATTA-CGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
7600883 TGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
1 TGCATTA-CGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
* *
7600928 TGCATTATTGGCATGAAAGGATGCCATAATTGAAATGCATATGGA
1 TGCATTA-CGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
* *
7600973 TGCATTATAGGTATGAAAGGATGCCATAATTGAAATGCATATGGG
1 TGCATTA-CGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
*
7601018 TGCATTATCGGTATGAAA
1 TGCATTA-CGGCATGAAA
7601036 ATATGCTATA
Statistics
Matches: 186, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 185 0.99
46 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.28
Consensus pattern (44 bp):
TGCATTACGGCATGAAAGGATGCCATAATTGAAATGCATATGGG
Found at i:7600906 original size:90 final size:90
Alignment explanation
Indices: 7600792--7601035 Score: 400
Period size: 90 Copynumber: 2.7 Consensus size: 90
7600782 ATGTACAACA
* *
7600792 ATGCATTA-CAGGCATGAAATGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAT
1 ATGCATTATC-GGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAA
7600856 GGATGCAATAATTGAAATGCATATGG
65 GGATGCAATAATTGAAATGCATATGG
* *
7600882 GTGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGCATGAAAG
1 ATGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAG
*
7600947 GATGCCATAATTGAAATGCATATGG
66 GATGCAATAATTGAAATGCATATGG
* * *
7600972 ATGCATTATAGGTATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGTATGAAA
1 ATGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAA
7601036 ATATGCTATA
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
90 142 0.99
91 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (90 bp):
ATGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAG
GATGCAATAATTGAAATGCATATGG
Found at i:7600951 original size:135 final size:135
Alignment explanation
Indices: 7600793--7601035 Score: 405
Period size: 135 Copynumber: 1.8 Consensus size: 135
7600783 TGTACAACAA
* * * *
7600793 TGCATTACAGGCATGAAATGATGCCATAATTGAAATGCATATGGGTGCATTATCGGCATGAATGG
1 TGCATTACAGGCATGAAAGGATGCCATAATTGAAATGCATATGGATGCATTATAGGCATGAAAGG
7600858 ATGCAATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCAT
66 ATGCAATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCAT
7600923 ATGGG
131 ATGGG
** *
7600928 TGCATTATTGGCATGAAAGGATGCCATAATTGAAATGCATATGGATGCATTATAGGTATGAAAGG
1 TGCATTACAGGCATGAAAGGATGCCATAATTGAAATGCATATGGATGCATTATAGGCATGAAAGG
* *
7600993 ATGCCATAATTGAAATGCATATGGGTGCATTATCGGTATGAAA
66 ATGCAATAATTGAAATGCATATGGGTGCATTATCGGCATGAAA
7601036 ATATGCTATA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
135 99 1.00
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.28
Consensus pattern (135 bp):
TGCATTACAGGCATGAAAGGATGCCATAATTGAAATGCATATGGATGCATTATAGGCATGAAAGG
ATGCAATAATTGAAATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGAAATGCAT
ATGGG
Found at i:7606126 original size:16 final size:16
Alignment explanation
Indices: 7606093--7606138 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
7606083 TGGGTTTGTA
* **
7606093 AATAATAATATTTTAT
1 AATAATAATAATAAAT
7606109 AATAATAATAATAAAT
1 AATAATAATAATAAAT
*
7606125 AATAAAAATAATAA
1 AATAATAATAATAA
7606139 TGGTTGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAATAATAATAAAT
Found at i:7606129 original size:19 final size:19
Alignment explanation
Indices: 7606092--7606139 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7606082 TTGGGTTTGT
** *
7606092 AAATAATAATATTTTATAA
1 AAATAATAATAAATAATAA
*
7606111 TAATAATAATAAATAATAA
1 AAATAATAATAAATAATAA
7606130 AAATAATAAT
1 AAATAATAAT
7606140 GGTTGAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAATAATAATAAATAATAA
Found at i:7606650 original size:118 final size:118
Alignment explanation
Indices: 7606480--7606829 Score: 540
Period size: 118 Copynumber: 3.0 Consensus size: 118
7606470 TCAAGCTAAA
* * * * *
7606480 GTTGAATAAACTCTTCTCATTATGAACCTT-TTTTCCATTATCGGATGAGTTCTTCTCATTACGA
1 GTTGAACAAGCTCTTCTCATTATGAA-CTTCTTATCCCTCATCGGATGAGTTCTTCTCATTACGA
* * **
7606544 ACCCTTCCATTAGAAATGTTGATTCACCTCCTTCTACGATGGACTCGAACCAAG
65 ACCATTCCATTAGAAATGTTGATCCACCTCCTTCTGTGATGGACTCGAACCAAG
7606598 GTTGAACAAGCTCTTCTCATTATGAACTTCTTATCCCTCATCGGATGAGTTCTTCTCATTACGAA
1 GTTGAACAAGCTCTTCTCATTATGAACTTCTTATCCCTCATCGGATGAGTTCTTCTCATTACGAA
* **
7606663 CCATTCCATTGGAAATGTTGATCCACCTCCTTCTGTGATGGACTTAAACCAAG
66 CCATTCCATTAGAAATGTTGATCCACCTCCTTCTGTGATGGACTCGAACCAAG
* *
7606716 GTTGAACAAGCTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTACAAA
1 GTTGAACAAGCTCTTCTCATTATGAACTTCTTATCCCTCATCGGATGAGTTCTTCTCATTACGAA
* *
7606781 CCATTCCATTTGAAATGTTGATCCACCTCCTTCTGTGATGGAATCGAAC
66 CCATTCCATTAGAAATGTTGATCCACCTCCTTCTGTGATGGACTCGAAC
7606830 ATAGTACTGA
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
117 3 0.01
118 210 0.99
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (118 bp):
GTTGAACAAGCTCTTCTCATTATGAACTTCTTATCCCTCATCGGATGAGTTCTTCTCATTACGAA
CCATTCCATTAGAAATGTTGATCCACCTCCTTCTGTGATGGACTCGAACCAAG
Done.