Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 78
Found at i:7911618 original size:20 final size:20
Alignment explanation
Indices: 7911593--7911647 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
7911583 GCATGGCCTT
*
7911593 GATGCATTGATGCACAGAAG
1 GATGCATCGATGCACAGAAG
7911613 GATGCATCGATGCACAGAAG
1 GATGCATCGATGCACAGAAG
*
7911633 AATGCATCGATGCAC
1 GATGCATCGATGCAC
7911648 TAATTGCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (20 bp):
GATGCATCGATGCACAGAAG
Found at i:7911737 original size:21 final size:21
Alignment explanation
Indices: 7911669--7911787 Score: 145
Period size: 21 Copynumber: 5.7 Consensus size: 21
7911659 GGTGTTTGAG
* * *
7911669 TGCATGAATGCACTGCA-TGA
1 TGCATGGATGCACTGTAGGGA
*
7911689 TGCATCGATGCACTAGT-GTAGG-
1 TGCATGGATGCACT-GTAG--GGA
7911711 TGCATGGATGCACTGTAGGGA
1 TGCATGGATGCACTGTAGGGA
7911732 TGCATGGATGCACTGTAGGGA
1 TGCATGGATGCACTGTAGGGA
*
7911753 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGTAGGGA
7911774 TGCATGGATGCACT
1 TGCATGGATGCACT
7911788 TTGACACCCT
Statistics
Matches: 87, Mismatches: 6, Indels: 11
0.84 0.06 0.11
Matches are distributed among these distances:
20 14 0.16
21 58 0.67
22 14 0.16
23 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (21 bp):
TGCATGGATGCACTGTAGGGA
Found at i:7911888 original size:29 final size:29
Alignment explanation
Indices: 7911867--7911924 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
7911857 AAACTTTGAA
*
7911867 TAAATTCAATT-ATGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
7911896 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
7911925 TGCCTTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 13 0.50
31 2 0.08
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:7911916 original size:30 final size:30
Alignment explanation
Indices: 7911867--7911926 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
7911857 AAACTTTGAA
*
7911867 TAAATTCAATTATGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
7911896 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
7911927 CCTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:7913241 original size:19 final size:20
Alignment explanation
Indices: 7913198--7913245 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7913188 TCTAAATCCT
*
7913198 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
7913218 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
7913237 TTTTCAAAA
1 TTTTCAAAA
7913246 GAAAATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:7914564 original size:20 final size:20
Alignment explanation
Indices: 7914539--7914613 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
7914529 TTGCAGCCTT
*
7914539 GATGCATGGATGCATGGCAG
1 GATGCATCGATGCATGGCAG
**
7914559 GATGCATCGATGCATGGCCTT
1 GATGCATCGATGCATGG-CAG
* ** *
7914580 GATGCATTGATGCACAGAAG
1 GATGCATCGATGCATGGCAG
7914600 GATGCATCGATGCA
1 GATGCATCGATGCA
7914614 CTAATTGCAT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 29 0.66
21 15 0.34
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.23
Consensus pattern (20 bp):
GATGCATCGATGCATGGCAG
Found at i:7914592 original size:41 final size:41
Alignment explanation
Indices: 7914534--7914613 Score: 124
Period size: 41 Copynumber: 2.0 Consensus size: 41
7914524 AGCCGTTGCA
** *
7914534 GCCTTGATGCATGGATGCATGGCAGGATGCATCGATGCATG
1 GCCTTGATGCATGGATGCACAGAAGGATGCATCGATGCATG
*
7914575 GCCTTGATGCATTGATGCACAGAAGGATGCATCGATGCA
1 GCCTTGATGCATGGATGCACAGAAGGATGCATCGATGCA
7914614 CTAATTGCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (41 bp):
GCCTTGATGCATGGATGCACAGAAGGATGCATCGATGCATG
Found at i:7914704 original size:21 final size:21
Alignment explanation
Indices: 7914678--7914732 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
7914668 CTAGTGTAGG
* * *
7914678 TGCATGGATGCTCTGTAGGGA
1 TGCATGGATGCACCGCAGGGA
7914699 TGCATGGATGCACCGCAGGGA
1 TGCATGGATGCACCGCAGGGA
7914720 TGCATGGATGCAC
1 TGCATGGATGCAC
7914733 TTTGACACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (21 bp):
TGCATGGATGCACCGCAGGGA
Found at i:7914834 original size:29 final size:29
Alignment explanation
Indices: 7914813--7914870 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
7914803 AAACTTTGAA
7914813 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
7914842 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
7914871 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:7914860 original size:30 final size:30
Alignment explanation
Indices: 7914813--7914872 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
7914803 AAACTTTGAA
7914813 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
7914842 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
7914873 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:7916186 original size:19 final size:20
Alignment explanation
Indices: 7916143--7916190 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
7916133 TCTAAATCCT
*
7916143 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
7916163 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
7916182 TTTTCAAAA
1 TTTTCAAAA
7916191 GAAAATCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:7917509 original size:20 final size:20
Alignment explanation
Indices: 7917484--7917521 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7917474 TTGCAGCCTT
*
7917484 GATGCATGGATGCATGGCAG
1 GATGCATCGATGCATGGCAG
7917504 GATGCATCGATGCATGGC
1 GATGCATCGATGCATGGC
7917522 CTTGATGCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.37, T:0.21
Consensus pattern (20 bp):
GATGCATCGATGCATGGCAG
Found at i:7917641 original size:21 final size:21
Alignment explanation
Indices: 7917573--7917670 Score: 94
Period size: 21 Copynumber: 4.7 Consensus size: 21
7917563 GGTGTTTGAG
* *
7917573 TGCATGGATGCACTACA-TGA
1 TGCATGGATGCACTGCAGGGA
* *
7917593 TGCATCGATGCACT--AGTGTAGG
1 TGCATGGATGCACTGCAG-G--GA
*
7917615 TGCATGGATGCACTGTAGGGA
1 TGCATGGATGCACTGCAGGGA
*
7917636 TGCATGGATGCACCGCAGGGA
1 TGCATGGATGCACTGCAGGGA
7917657 TGCATGGATGCACT
1 TGCATGGATGCACT
7917671 TTGACACCCT
Statistics
Matches: 64, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.02
20 13 0.20
21 33 0.52
22 14 0.22
23 1 0.02
24 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.23
Consensus pattern (21 bp):
TGCATGGATGCACTGCAGGGA
Found at i:7917771 original size:29 final size:29
Alignment explanation
Indices: 7917750--7917807 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
7917740 AAACTTTGAA
7917750 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
7917779 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
7917808 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:7917797 original size:30 final size:30
Alignment explanation
Indices: 7917750--7917809 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
7917740 AAACTTTGAA
7917750 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
7917779 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
7917810 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:7918341 original size:45 final size:44
Alignment explanation
Indices: 7918291--7918424 Score: 160
Period size: 45 Copynumber: 3.0 Consensus size: 44
7918281 AAAGGATGCC
*
7918291 ATAGTTGAAATGTATATGAGTACATTATCAACAGAAAATCATACT
1 ATAGTTGAAATGTATATGAGTACATTATCAATAGAAAAT-ATACT
* * * * *
7918336 TTAGTTAAAATGTATATGGGTACATTATTAATAGAAAAGTATGCT
1 ATAGTTGAAATGTATATGAGTACATTATCAATAGAAAA-TATACT
* * * *
7918381 AGAGTTGAAATGCATATGAGTGCATTATCAATAAAAAATATACT
1 ATAGTTGAAATGTATATGAGTACATTATCAATAGAAAATATACT
7918425 GTTGAGTTAA
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
44 5 0.07
45 67 0.92
46 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (44 bp):
ATAGTTGAAATGTATATGAGTACATTATCAATAGAAAATATACT
Found at i:7919199 original size:65 final size:65
Alignment explanation
Indices: 7919130--7919277 Score: 203
Period size: 65 Copynumber: 2.3 Consensus size: 65
7919120 TACACTTAGG
* *
7919130 GTGCATCGGTACACT-AATTACATTTGATGTTTCAA-AAGAGCCAGGAGTGCATCGATGCATGGT
1 GTGCATCGGTACACTAAAATACATTTGATGTTTCAATAA-AACCAGGAGTGCATCGATGCATGG-
7919193 CT
64 CT
* * *
7919195 GTGCATCGGTACA-TAAAATGCTTTTGATGTTTCAATAAAATCAGGAGTGCATCGATGCATGGCT
1 GTGCATCGGTACACTAAAATACATTTGATGTTTCAATAAAACCAGGAGTGCATCGATGCATGGCT
*
7919259 GTGCATCGGTACACAAAAA
1 GTGCATCGGTACACTAAAA
7919278 GCTTTCGAAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
64 16 0.22
65 56 0.76
66 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (65 bp):
GTGCATCGGTACACTAAAATACATTTGATGTTTCAATAAAACCAGGAGTGCATCGATGCATGGCT
Found at i:7919643 original size:13 final size:13
Alignment explanation
Indices: 7919625--7919658 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7919615 TAAGATTTTC
*
7919625 TTTGAAAATCAGT
1 TTTGAAAATCAAT
7919638 TTTG-AAATCAAT
1 TTTGAAAATCAAT
7919650 TTTGAAAAT
1 TTTGAAAAT
7919659 TAAAAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (13 bp):
TTTGAAAATCAAT
Found at i:7921942 original size:44 final size:44
Alignment explanation
Indices: 7921825--7921943 Score: 159
Period size: 44 Copynumber: 2.7 Consensus size: 44
7921815 TGATGAGTGT
* * *
7921825 ATCGGTACACTGT-AGAGTGTATCGATGCACATTCAAGGCATGC
1 ATCGGTACACTTTCATAGTGTATCGATGCATATTCAAGGCATGC
* * * * *
7921868 ATCGGTGCACCTTCATAGTGTAACAATGCATATTCAAGGGATGC
1 ATCGGTACACTTTCATAGTGTATCGATGCATATTCAAGGCATGC
7921912 ATCGGTACACTTTCATAGTGTATCGATGCATA
1 ATCGGTACACTTTCATAGTGTATCGATGCATA
7921944 GTGCACAAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
43 10 0.16
44 53 0.84
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
ATCGGTACACTTTCATAGTGTATCGATGCATATTCAAGGCATGC
Found at i:7924011 original size:18 final size:18
Alignment explanation
Indices: 7923988--7924045 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
7923978 TTTCCATCAG
*
7923988 TAACAATTGTTATCTTTT
1 TAACAATTGATATCTTTT
7924006 TAACAATTGATATCCTTTTGT
1 TAACAATTGATAT-C-TTT-T
*
7924027 TAATAATTGATATCTTTT
1 TAACAATTGATATCTTTT
7924045 T
1 T
7924046 CATTAAACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
18 14 0.40
19 4 0.11
20 4 0.11
21 13 0.37
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.53
Consensus pattern (18 bp):
TAACAATTGATATCTTTT
Found at i:7924034 original size:21 final size:21
Alignment explanation
Indices: 7923988--7924045 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
7923978 TTTCCATCAG
*
7923988 TAACAATTGTTAT-C-TTT-T
1 TAACAATTGATATCCTTTTGT
7924006 TAACAATTGATATCCTTTTGT
1 TAACAATTGATATCCTTTTGT
* *
7924027 TAATAATTGATATCTTTTT
1 TAACAATTGATATCCTTTT
7924046 CATTAAACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 12 0.35
19 1 0.03
20 3 0.09
21 18 0.53
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.53
Consensus pattern (21 bp):
TAACAATTGATATCCTTTTGT
Found at i:7925289 original size:45 final size:45
Alignment explanation
Indices: 7925075--7925277 Score: 246
Period size: 45 Copynumber: 4.5 Consensus size: 45
7925065 AAATCCCAAC
* *
7925075 GTATACTATAGTTAAAATGCATATGGGTGCATTATCAACAGAAAA
1 GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
* ** * * *
7925120 TTATGCTAGAGTTGAAATGTATATGGGTACATTATCAACAGAAAA
1 GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
* * ** * *
7925165 GTATACTATGGTTGAGTTGTATATGGGTACATTATCAACAGAAAA
1 GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
7925210 GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
1 GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
* *
7925255 G-ATGTTATAGTTTAAAGTGCATA
1 GTATATTATAGTTGAAA-TGCATA
7925278 ATGGTGTATT
Statistics
Matches: 137, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 13 0.09
45 124 0.91
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32
Consensus pattern (45 bp):
GTATATTATAGTTGAAATGCATATGGGTGCATTATCAACAGAAAA
Found at i:7928232 original size:45 final size:45
Alignment explanation
Indices: 7928159--7928489 Score: 423
Period size: 45 Copynumber: 7.4 Consensus size: 45
7928149 TGAAAAGTAT
* * * * *
7928159 ATTATCAACAGAAAAATATGCTAGAGTTGAAATATATATGGGTAA
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
* * *
7928204 ATTATCAACAGAAAAGCATACTTTAGTTGAAATGTATATGAGTAC
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
* * * *
7928249 ATTATCAACAGAAAACTATGA-TAGAGTTGAAATGTATATGAGTGC
1 ATTATCAACAGAAAAGTAT-ACTATAGTTGAAATGTATATGGGTAC
* * *
7928294 ATTATCAACAGAAAAATATACTATGGTTGAAAT-TCATATGGGTTC
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGT-ATATGGGTAC
* *
7928339 ATTATCAACAGAAAAGTATGCTAGAGTTGAAATGTATATGGGTAC
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
* * * *
7928384 ACTATCAACAGAAAAGTATACTATGGTTGAGATGTATATGGTTAC
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
* *
7928429 ATTATCAACAGAAAAGTATACTATAGTTGAAATGCATATGGGTGC
1 ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
7928474 ATTATCAACAGAAAAG
1 ATTATCAACAGAAAAG
7928490 ATGTTATAGT
Statistics
Matches: 247, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
44 2 0.01
45 243 0.98
46 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (45 bp):
ATTATCAACAGAAAAGTATACTATAGTTGAAATGTATATGGGTAC
Found at i:7931705 original size:22 final size:22
Alignment explanation
Indices: 7931675--7931792 Score: 134
Period size: 22 Copynumber: 5.5 Consensus size: 22
7931665 CTTAAGGGAA
7931675 GTATCGATACCAGTTGAGGATG
1 GTATCGATACCAGTTGAGGATG
*
7931697 GTATTGATACCAGTTGAGGATG
1 GTATCGATACCAGTTGAGGATG
*
7931719 GTATCGATACTAGTTGAGGATG
1 GTATCGATACCAGTTGAGGATG
* * *
7931741 GTATCGATA-CTG-AGAGGGA-A
1 GTATCGATACCAGTTGA-GGATG
* *
7931761 GTATCAATACCAGTTGAGGAGG
1 GTATCGATACCAGTTGAGGATG
*
7931783 GTATCCATAC
1 GTATCGATAC
7931793 TGAGAGGGTA
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
20 10 0.12
21 9 0.11
22 61 0.76
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.27
Consensus pattern (22 bp):
GTATCGATACCAGTTGAGGATG
Found at i:7931778 original size:42 final size:42
Alignment explanation
Indices: 7931669--7931831 Score: 174
Period size: 42 Copynumber: 3.9 Consensus size: 42
7931659 GTATTTCTTA
* *
7931669 AGGGAAGTATCGATACCAGTTGAGGATGGTATTGATAC-CAG
1 AGGGAAGTATCGATACCAGTTGAGGATGGTATCGATACTGAG
* * *
7931710 TTGAGGATGGTATCGATACTAGTTGAGGATGGTATCGATACTGAG
1 -AG-GGA-AGTATCGATACCAGTTGAGGATGGTATCGATACTGAG
* * *
7931755 AGGGAAGTATCAATACCAGTTGAGGAGGGTATCCATACTGAG
1 AGGGAAGTATCGATACCAGTTGAGGATGGTATCGATACTGAG
*
7931797 AGGGTAA-TATTGATACCAG--G-GGATGGTATCGATAC
1 AGGG-AAGTATCGATACCAGTTGAGGATGGTATCGATAC
7931832 CATTTTTAAG
Statistics
Matches: 102, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
39 13 0.13
40 1 0.01
42 47 0.46
43 8 0.08
44 31 0.30
45 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.26
Consensus pattern (42 bp):
AGGGAAGTATCGATACCAGTTGAGGATGGTATCGATACTGAG
Found at i:7932504 original size:21 final size:20
Alignment explanation
Indices: 7932458--7932505 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7932448 TCGAGGGTTT
* * *
7932458 TATGTGGTCCTTTGGATAAT
1 TATGTGGTCCTTAGGACAAA
7932478 TATGTGGTCCTTCAGGACAAA
1 TATGTGGTCCTT-AGGACAAA
7932499 TATGTGG
1 TATGTGG
7932506 CACTTCGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.23, C:0.12, G:0.27, T:0.38
Consensus pattern (20 bp):
TATGTGGTCCTTAGGACAAA
Found at i:7938617 original size:22 final size:22
Alignment explanation
Indices: 7938586--7938659 Score: 64
Period size: 22 Copynumber: 3.5 Consensus size: 22
7938576 CTTAAGCAAA
* **
7938586 GTATCAATACGAGTTGAGGCTG
1 GTATCGATACGAGTTGAGGAAG
*
7938608 GTATCGATACTGAG-AG-GGAA-
1 GTATCGATAC-GAGTTGAGGAAG
* *
7938628 GTATCGATACCAGTTGAGGAGG
1 GTATCGATACGAGTTGAGGAAG
7938650 GTATCGATAC
1 GTATCGATAC
7938660 TAAGAGGGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
19 2 0.05
20 11 0.27
21 5 0.12
22 20 0.49
23 3 0.07
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.24
Consensus pattern (22 bp):
GTATCGATACGAGTTGAGGAAG
Found at i:7938643 original size:42 final size:42
Alignment explanation
Indices: 7938584--7938682 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
7938574 TTCTTAAGCA
* * ** *
7938584 AAGTATCAATACGAGTTGAGGCTGGTATCGATACTGAGAGGG
1 AAGTATCGATACCAGTTGAGGAGGGTATCGATACTAAGAGGG
7938626 AAGTATCGATACCAGTTGAGGAGGGTATCGATACTAAGAGGG
1 AAGTATCGATACCAGTTGAGGAGGGTATCGATACTAAGAGGG
*
7938668 TAGTATCGATACCAG
1 AAGTATCGATACCAG
7938683 GGGGATGGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.23
Consensus pattern (42 bp):
AAGTATCGATACCAGTTGAGGAGGGTATCGATACTAAGAGGG
Found at i:7938693 original size:20 final size:20
Alignment explanation
Indices: 7938606--7938701 Score: 70
Period size: 20 Copynumber: 4.7 Consensus size: 20
7938596 GAGTTGAGGC
*
7938606 TGGTATCGATACTGAGAGGGA
1 TGGTATCGATAC-CAGAGGGA
* *
7938627 -AGTATCGATACCAGTTGAGGA
1 TGGTATCGATACCAG-AG-GGA
* *
7938648 GGGTATCGATACTAAGAGGG-
1 TGGTATCGATAC-CAGAGGGA
* *
7938668 TAGTATCGATACCAGGGGGA
1 TGGTATCGATACCAGAGGGA
*
7938688 TGGTATAGATACCA
1 TGGTATCGATACCA
7938702 TTTTTAAGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 11
0.72 0.15 0.14
Matches are distributed among these distances:
19 7 0.12
20 33 0.57
21 5 0.09
22 11 0.19
23 2 0.03
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.23
Consensus pattern (20 bp):
TGGTATCGATACCAGAGGGA
Found at i:7938762 original size:19 final size:20
Alignment explanation
Indices: 7938740--7938783 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7938730 TTTGGTATTA
*
7938740 ATACCTTGAAGAG-GTATCG
1 ATACCTTAAAGAGAGTATCG
7938759 ATACCTTAAAGAGAAGTATCG
1 ATACCTTAAAGAG-AGTATCG
7938780 ATAC
1 ATAC
7938784 TGTAAGGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 12 0.55
21 10 0.45
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (20 bp):
ATACCTTAAAGAGAGTATCG
Found at i:7947032 original size:26 final size:26
Alignment explanation
Indices: 7946978--7947034 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
7946968 CACTCAGAAG
*
7946978 ATCTTTTCATGATGATATTTTTCTGA
1 ATCTTTTCATGATGATATTTTTCTAA
*
7947004 ATCTTTTCTTGAT-ATCA-TTTTCTCAA
1 ATCTTTTCATGATGAT-ATTTTTCT-AA
7947030 ATCTT
1 ATCTT
7947035 CTAACTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.54
Consensus pattern (26 bp):
ATCTTTTCATGATGATATTTTTCTAA
Found at i:7948532 original size:16 final size:17
Alignment explanation
Indices: 7948506--7948546 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7948496 TTAATGATGC
*
7948506 AAATGAAAACAAAAA-GG
1 AAAT-AAAACAAAAATGA
7948523 AAATAAAACAAAAATGA
1 AAATAAAACAAAAATGA
7948540 AAATAAA
1 AAATAAA
7948547 TAAGTTAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.76, C:0.05, G:0.10, T:0.10
Consensus pattern (17 bp):
AAATAAAACAAAAATGA
Found at i:7949587 original size:17 final size:18
Alignment explanation
Indices: 7949565--7949606 Score: 68
Period size: 17 Copynumber: 2.3 Consensus size: 18
7949555 AATTAATGTT
7949565 AAAAATAAAAT-ATTAAA
1 AAAAATAAAATAATTAAA
7949582 AAAAATAAAATAATTAAA
1 AAAAATAAAATAATTAAA
7949600 AGAAAAT
1 A-AAAAT
7949607 TCAAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 11 0.48
18 7 0.30
19 5 0.22
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAAATAAAATAATTAAA
Found at i:7950747 original size:10 final size:10
Alignment explanation
Indices: 7950718--7950760 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
7950708 GACCCAATTA
*
7950718 AAAATAAAAT
1 AAAATGAAAT
7950728 -AAAT-AAAT
1 AAAATGAAAT
7950736 AAAATGAAAT
1 AAAATGAAAT
7950746 AAAATGAAAGT
1 AAAATGAAA-T
7950757 AAAA
1 AAAA
7950761 AAATAGTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 4 0.13
9 8 0.27
10 13 0.43
11 5 0.17
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (10 bp):
AAAATGAAAT
Found at i:7950931 original size:24 final size:24
Alignment explanation
Indices: 7950898--7950975 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 24
7950888 TTCAAAAACC
*
7950898 ATTTTAAAAAACTATATATTATAT
1 ATTTTCAAAAACTATATATTATAT
*
7950922 GTTTTCAAAAAC--TATATTATAT
1 ATTTTCAAAAACTATATATTATAT
7950944 ATTTTCAAAAAACTATATATATTATAT
1 ATTTTC-AAAAAC--TATATATTATAT
7950971 ATTTT
1 ATTTT
7950976 TGAGATATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
22 15 0.33
23 6 0.13
24 10 0.22
27 15 0.33
ACGTcount: A:0.45, C:0.06, G:0.01, T:0.47
Consensus pattern (24 bp):
ATTTTCAAAAACTATATATTATAT
Found at i:7952860 original size:25 final size:24
Alignment explanation
Indices: 7952832--7952882 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 24
7952822 AAACTACCTA
7952832 TATT-TTATTTAAAAATATTCATATT
1 TATTATTATTTAAAAAT-TT-ATATT
*
7952857 TATTAATTTTTTAAAAATTTATATT
1 TATT-ATTATTTAAAAATTTATATT
7952882 T
1 T
7952883 GCTAAAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 10 0.43
26 2 0.09
27 11 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (24 bp):
TATTATTATTTAAAAATTTATATT
Found at i:7957149 original size:20 final size:20
Alignment explanation
Indices: 7957124--7957162 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
7957114 TGATTCTTAG
7957124 ATTCGAGAGAATTAAGATAA
1 ATTCGAGAGAATTAAGATAA
7957144 ATTCGAGAGAATTAAGATA
1 ATTCGAGAGAATTAAGATA
7957163 GATCTACGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.21, T:0.26
Consensus pattern (20 bp):
ATTCGAGAGAATTAAGATAA
Found at i:7966548 original size:118 final size:118
Alignment explanation
Indices: 7966340--7966578 Score: 469
Period size: 118 Copynumber: 2.0 Consensus size: 118
7966330 GAAGGAAATT
*
7966340 AATTACTTTTTGCTACTATTTTGTTTAATTTGAACATACAACGAAGATGTTTATGGATCAACTGC
1 AATTACTTTTTGCAACTATTTTGTTTAATTTGAACATACAACGAAGATGTTTATGGATCAACTGC
7966405 AAATAGAAGATAAATTTGACAAAAGTTTTGAATCGGAAAGGATATTGGACGAC
66 AAATAGAAGATAAATTTGACAAAAGTTTTGAATCGGAAAGGATATTGGACGAC
7966458 AATTACTTTTTGCAACTATTTTGTTTAATTTGAACATACAACGAAGATGTTTATGGATCAACTGC
1 AATTACTTTTTGCAACTATTTTGTTTAATTTGAACATACAACGAAGATGTTTATGGATCAACTGC
7966523 AAATAGAAGATAAATTTGACAAAAGTTTTGAATCGGAAAGGATATTGGACGAC
66 AAATAGAAGATAAATTTGACAAAAGTTTTGAATCGGAAAGGATATTGGACGAC
7966576 AAT
1 AAT
7966579 GGAAAGGTTA
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
118 120 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (118 bp):
AATTACTTTTTGCAACTATTTTGTTTAATTTGAACATACAACGAAGATGTTTATGGATCAACTGC
AAATAGAAGATAAATTTGACAAAAGTTTTGAATCGGAAAGGATATTGGACGAC
Found at i:7968871 original size:216 final size:216
Alignment explanation
Indices: 7968612--7969041 Score: 752
Period size: 216 Copynumber: 2.0 Consensus size: 216
7968602 AACAAAAACT
* **
7968612 AGAGAGTTATGAAGCTCCAACAACTCCTCAATCAAATCGTGTGAGAATACGTCCCAATTGGTACT
1 AGAGAGTTATGAAGCTCCAACAACTCCTCAATCAAATCGTGTGAGAAGACGTCCCAATTGACACT
7968677 CATATTATGTTATAAAAGGAAATATTACATACTGCCTTTTAATAGAGGACGGCGAGCCATCAACA
66 CATATTATGTTATAAAAGGAAATATTACATACTGCCTTTTAATAGAGGACGGCGAGCCATCAACA
* * *
7968742 TTCCAGGAGGCAATAAACAGCTCAGATGCTTCATTATGGATGATGGCGATGCAAGAAGAAATTGA
131 TTCCAGGAGGCAATAAACAGCTAAGATGCTTCATTATGGATGATGACGATACAAGAAGAAATTGA
*
7968807 AGCCCTTTATAAAAGATAACC
196 AGCCCTTCATAAAAGATAACC
*
7968828 AGAGAGTTCTGAAGCTCCAACAACTCCTCAATCAAATCGTGTGAGAAGACGTCCCAATTGACACT
1 AGAGAGTTATGAAGCTCCAACAACTCCTCAATCAAATCGTGTGAGAAGACGTCCCAATTGACACT
*
7968893 CATATTATGTTATATAAGGAAATATTACATACTGCCTTTTAATAGAGGACGGCGAGCCATCAACA
66 CATATTATGTTATAAAAGGAAATATTACATACTGCCTTTTAATAGAGGACGGCGAGCCATCAACA
* * *
7968958 TTCTAGGAGGTAATAAACAGCTAAGATGCTTCATTATGGATGATGACGATATAAGAAGAAATTGA
131 TTCCAGGAGGCAATAAACAGCTAAGATGCTTCATTATGGATGATGACGATACAAGAAGAAATTGA
7969023 AGCCCTTCATAAAAGATAA
196 AGCCCTTCATAAAAGATAA
7969042 TACATGGGAC
Statistics
Matches: 202, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
216 202 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (216 bp):
AGAGAGTTATGAAGCTCCAACAACTCCTCAATCAAATCGTGTGAGAAGACGTCCCAATTGACACT
CATATTATGTTATAAAAGGAAATATTACATACTGCCTTTTAATAGAGGACGGCGAGCCATCAACA
TTCCAGGAGGCAATAAACAGCTAAGATGCTTCATTATGGATGATGACGATACAAGAAGAAATTGA
AGCCCTTCATAAAAGATAACC
Found at i:7973862 original size:53 final size:53
Alignment explanation
Indices: 7973776--7973899 Score: 151
Period size: 53 Copynumber: 2.4 Consensus size: 53
7973766 GTACATGAGT
* * * *
7973776 TGCACCTA-AGTGTCGAAATGATAATCCACAAACTTATTATGAATTCTATGGA
1 TGCACATATAGTGTCGAAATGATAATCCACAAACTCATTATGAATACCATGGA
* * * * *
7973828 TGCACATATAGTGTCGAAATGGTCATTCATAAACTCATTATGAATACCATGGG
1 TGCACATATAGTGTCGAAATGATAATCCACAAACTCATTATGAATACCATGGA
*
7973881 TGCACACATAGTGTCGAAA
1 TGCACATATAGTGTCGAAA
7973900 GTGCATATAG
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
52 7 0.11
53 54 0.89
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (53 bp):
TGCACATATAGTGTCGAAATGATAATCCACAAACTCATTATGAATACCATGGA
Found at i:7973986 original size:48 final size:48
Alignment explanation
Indices: 7973915--7974062 Score: 260
Period size: 48 Copynumber: 3.1 Consensus size: 48
7973905 TATAGTACTG
7973915 ATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATC
1 ATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATC
*
7973963 ATACGAAAATGAAACATATGCATTAAACAAAATCGATCGATAACCATC
1 ATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATC
* * *
7974011 ATACGAAAATGCAACTTATACATTAAACAAAATCGATCAATAACCATC
1 ATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATC
7974059 ATAC
1 ATAC
7974063 ACAAAGTACG
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.22
Consensus pattern (48 bp):
ATACGAAAATGCAACATATGCATTAAACAAAATCGATCGATAACCATC
Found at i:7979390 original size:21 final size:18
Alignment explanation
Indices: 7979353--7979391 Score: 51
Period size: 21 Copynumber: 2.0 Consensus size: 18
7979343 CCGTTAATAG
7979353 GTGGTTGAGGTTGTTAGA
1 GTGGTTGAGGTTGTTAGA
7979371 GTGGTTAGAGAGTCTGTTAGA
1 GTGGTT-GAG-GT-TGTTAGA
7979392 CTTGTAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 2 0.11
21 7 0.39
ACGTcount: A:0.21, C:0.03, G:0.41, T:0.36
Consensus pattern (18 bp):
GTGGTTGAGGTTGTTAGA
Found at i:7982293 original size:139 final size:139
Alignment explanation
Indices: 7982045--7982309 Score: 358
Period size: 139 Copynumber: 1.9 Consensus size: 139
7982035 TTACATTAAA
7982045 TAATAAAATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTTTAATCATTATGAAAC
1 TAATAAAATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTTTAATCATTATGAAAC
*
7982110 GTTATACTACAAGAACCATTCCTCCCTATCTTTTAGTGTTAAAAATGTTATATAGTAACAAAATA
66 GTTATACTACAAGAACCATTCCTCCCTATCTTTTAGTGTCAAAAATGTTATATAGTAACAAAATA
7982175 TATTGTAAT
131 TATTGTAAT
* * * *
7982184 TAATAAATTTTAAGTTTTTTGTAATTAATTATTTTTGTAGTTATATATTTTTAATCATTATGAAA
1 TAATAAAATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATA-TTTTAATCATTATG-AA
** * * * * *
7982249 AC-TTATACTATTAGTAA-TATTTCTTCCTAT-TTTT-GGGTGCAAAAATGTTATATAGTGACAA
64 ACGTTATACTACAAG-AACCATTCCTCCCTATCTTTTAGTGT-CAAAAATGTTATATAGTAACAA
7982310 GTTTTGTAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
138 3 0.03
139 67 0.61
140 34 0.31
141 6 0.05
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (139 bp):
TAATAAAATTCAAGTTTTTTGTAATAAATTATTTTTGTACTTATATATTTTAATCATTATGAAAC
GTTATACTACAAGAACCATTCCTCCCTATCTTTTAGTGTCAAAAATGTTATATAGTAACAAAATA
TATTGTAAT
Found at i:7982689 original size:2 final size:2
Alignment explanation
Indices: 7982682--7982707 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7982672 TTAAAATTTG
7982682 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7982708 TGAATTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7983139 original size:18 final size:17
Alignment explanation
Indices: 7983102--7983153 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
7983092 CTCTATTTTA
7983102 TTTTAAAGGAAATTGAT
1 TTTTAAAGGAAATTGAT
*
7983119 TTTTAAAGGGAACTTG-T
1 TTTTAAA-GGAAATTGAT
* *
7983136 TTTTAGA-GAAATTTAT
1 TTTTAAAGGAAATTGAT
7983152 TT
1 TT
7983154 GTATTTATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 5 0.17
16 3 0.10
17 14 0.48
18 7 0.24
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (17 bp):
TTTTAAAGGAAATTGAT
Found at i:7985282 original size:36 final size:36
Alignment explanation
Indices: 7985232--7985422 Score: 310
Period size: 36 Copynumber: 5.3 Consensus size: 36
7985222 GTAAGACACA
7985232 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
*
7985268 TCATTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
* *
7985304 TCCTTCCGTTCGACTTGAATCGGAGGTGCCGATGTT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
* * *
7985340 TCCTTTCGTTCGATTTGAATCGGAAGTGCCTATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
* *
7985376 TCCTTCCGTTCGATTTGAATCAGAAGTGCCGATGCT
1 TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
7985412 TCCTTCCGTTC
1 TCCTTCCGTTC
7985423 TTCTTATTCA
Statistics
Matches: 143, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 143 1.00
ACGTcount: A:0.16, C:0.26, G:0.24, T:0.34
Consensus pattern (36 bp):
TCCTTCCGTTCGACTTGAATCGGAAGTGCCGATGCT
Found at i:7987858 original size:33 final size:32
Alignment explanation
Indices: 7987774--7987858 Score: 91
Period size: 33 Copynumber: 2.7 Consensus size: 32
7987764 ATATTTTGTT
*
7987774 AAAATAAAAA-TTGTGACAAATTTACTTAATC
1 AAAATAAAAATTTGTGACAAATTTAATTAATC
* * * **
7987805 AAAATAACAATTTATAACAAATATTAATTTCTC
1 AAAATAAAAATTTGTGACAAAT-TTAATTAATC
*
7987838 AATATAAAAATTTGTGACAAA
1 AAAATAAAAATTTGTGACAAA
7987859 GTAATATTCT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
31 9 0.21
32 9 0.21
33 24 0.57
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (32 bp):
AAAATAAAAATTTGTGACAAATTTAATTAATC
Found at i:7994807 original size:2 final size:2
Alignment explanation
Indices: 7994800--7994829 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7994790 TAACTATGAT
7994800 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7994830 GTGCTATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7994932 original size:15 final size:15
Alignment explanation
Indices: 7994912--7994940 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7994902 AGGGGTGCAT
7994912 TTATATATTATATAC
1 TTATATATTATATAC
7994927 TTATATATTATATA
1 TTATATATTATATA
7994941 GATTATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATATATTATATAC
Found at i:7994976 original size:2 final size:2
Alignment explanation
Indices: 7994969--7995016 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
7994959 ACAATATTGA
*
7994969 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7995011 AT AT AT
1 AT AT AT
7995017 GTGTGTGTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8001088 original size:21 final size:20
Alignment explanation
Indices: 8001062--8001122 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 20
8001052 TTTTTTTGAA
8001062 TTTTTGGCTTTTTTGGCTCTT
1 TTTTTGGCTTTTTTGGC-CTT
** *
8001083 TTTTTGTTTTTTTTTGCCTT
1 TTTTTGGCTTTTTTGGCCTT
8001103 TTTTT---TTTTTT-GCCTT
1 TTTTTGGCTTTTTTGGCCTT
8001119 TTTT
1 TTTT
8001123 GTTTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 9 0.24
17 6 0.16
20 8 0.22
21 14 0.38
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.77
Consensus pattern (20 bp):
TTTTTGGCTTTTTTGGCCTT
Found at i:8001095 original size:22 final size:19
Alignment explanation
Indices: 8001070--8001134 Score: 73
Period size: 16 Copynumber: 3.4 Consensus size: 19
8001060 AATTTTTGGC
*
8001070 TTTTTTGGCTCTTTTTTTGTT
1 TTTTTTTGC-CTTTTTTT-TT
8001091 TTTTTTTGCC---TTTTTT
1 TTTTTTTGCCTTTTTTTTT
8001107 TTTTTTTGCCTTTTTTGTTT
1 TTTTTTTGCCTTTTTT-TTT
8001127 TTTTTTTG
1 TTTTTTTG
8001135 TTTTTTTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
16 12 0.31
17 4 0.10
19 3 0.08
20 12 0.31
21 8 0.21
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.80
Consensus pattern (19 bp):
TTTTTTTGCCTTTTTTTTT
Found at i:8001108 original size:12 final size:11
Alignment explanation
Indices: 8001070--8001141 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 11
8001060 AATTTTTGGC
* *
8001070 TTTTTTGGCTC
1 TTTTTTTGCTT
8001081 TTTTTTTG-TT
1 TTTTTTTGCTT
8001091 TTTTTTTGCCTT
1 TTTTTTTG-CTT
*
8001103 TTTTTTT-TTT
1 TTTTTTTGCTT
*
8001113 TGCCTTTTTTGTTT
1 T---TTTTTTGCTT
8001127 TTTTTTTG-TT
1 TTTTTTTGCTT
8001137 TTTTT
1 TTTTT
8001142 GAAAAAAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
10 19 0.37
11 14 0.27
12 9 0.17
13 6 0.12
14 4 0.08
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.82
Consensus pattern (11 bp):
TTTTTTTGCTT
Found at i:8001138 original size:16 final size:16
Alignment explanation
Indices: 8001084--8001130 Score: 76
Period size: 16 Copynumber: 2.8 Consensus size: 16
8001074 TTGGCTCTTT
8001084 TTTTGTTTTTTTTTGCC
1 TTTT-TTTTTTTTTGCC
8001101 TTTTTTTTTTTTTGCC
1 TTTTTTTTTTTTTGCC
8001117 TTTTTTGTTTTTTT
1 TTTTTT-TTTTTTT
8001131 TTTGTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 18 0.62
17 11 0.38
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.83
Consensus pattern (16 bp):
TTTTTTTTTTTTTGCC
Found at i:8003962 original size:2 final size:2
Alignment explanation
Indices: 8003955--8003983 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8003945 TTTTATGGAA
8003955 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8003984 ATGAATGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8005756 original size:25 final size:25
Alignment explanation
Indices: 8005722--8005772 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8005712 TACTTGGATT
8005722 TGAATTTATTAAGAGTTTAACAAAC
1 TGAATTTATTAAGAGTTTAACAAAC
8005747 TGAATTTATTAAGAGTTTAACAAAC
1 TGAATTTATTAAGAGTTTAACAAAC
8005772 T
1 T
8005773 CAACCTTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (25 bp):
TGAATTTATTAAGAGTTTAACAAAC
Found at i:8009648 original size:26 final size:27
Alignment explanation
Indices: 8009589--8009648 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
8009579 CATAAGACCT
8009589 TATAATACCATTAATGCTTATTATGAAA
1 TATAATACCATTAATGCTTATTAT-AAA
**
8009617 TCATAATATTATTAATGCTTATTAT-AA
1 T-ATAATACCATTAATGCTTATTATAAA
8009644 TATAA
1 TATAA
8009649 AATTTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 4 0.14
27 3 0.10
28 1 0.03
29 21 0.72
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (27 bp):
TATAATACCATTAATGCTTATTATAAA
Found at i:8011609 original size:21 final size:21
Alignment explanation
Indices: 8011584--8011645 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
8011574 ATTATCCAAT
*
8011584 AAACTTGACATCCATAATAAC
1 AAACTTGAAATCCATAATAAC
* *
8011605 AAACTTGAAATCCATAACAAG
1 AAACTTGAAATCCATAATAAC
8011626 AAACTTGAAATCCATAATAA
1 AAACTTGAAATCCATAATAA
8011646 TAAATCAGAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (21 bp):
AAACTTGAAATCCATAATAAC
Found at i:8012855 original size:57 final size:58
Alignment explanation
Indices: 8012786--8012901 Score: 207
Period size: 57 Copynumber: 2.0 Consensus size: 58
8012776 TTCAGCAAAC
8012786 AAATGATAGTGAAAGCAGTACTAGAATTGTTATCACAT-GAAAAAAATGCAAATAAAA
1 AAATGATAGTGAAAGCAGTACTAGAATTGTTATCACATAGAAAAAAATGCAAATAAAA
*
8012843 AAATGATAGTGAAAGCAGTACTAGTATTGTTATCACATGAGAAAAAAATGCAAATAAAA
1 AAATGATAGTGAAAGCAGTACTAGAATTGTTATCACAT-AGAAAAAAATGCAAATAAAA
8012902 CGGAATATGA
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
57 37 0.66
59 19 0.34
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (58 bp):
AAATGATAGTGAAAGCAGTACTAGAATTGTTATCACATAGAAAAAAATGCAAATAAAA
Found at i:8014069 original size:40 final size:41
Alignment explanation
Indices: 8013898--8014096 Score: 175
Period size: 41 Copynumber: 4.8 Consensus size: 41
8013888 ACTTAGAAAT
* * * ** *
8013898 TATGAGTATTTAGCGGTTTTTGTATAAAAACATCATTAAAA
1 TATGAGTCTATAGCGGTGTTTGTATAAAAACGCCACTAAAA
* * * * * * * *
8013939 TATAAGTTTATAGTGGTTTTTTTTATAAAAACGCTAATAAAG
1 TATGAGTCTATAGCGG-TGTTTGTATAAAAACGCCACTAAAA
* ** *
8013981 TATGAGTCTATAGCAGCATTTGTATAAAAACGCCACTAAAG
1 TATGAGTCTATAGCGGTGTTTGTATAAAAACGCCACTAAAA
*
8014022 TACGAGTCTATAGCGGTGTTTGTAT-AAAACGCCACTAAAA
1 TATGAGTCTATAGCGGTGTTTGTATAAAAACGCCACTAAAA
* * *
8014062 TATGAGTCTTTAGCGGTGTTTTTACTTAAAACGCC
1 TATGAGTCTATAGCGGTGTTTGTA-TAAAAACGCC
8014097 GCGATATAGA
Statistics
Matches: 128, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 35 0.27
41 54 0.42
42 39 0.30
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (41 bp):
TATGAGTCTATAGCGGTGTTTGTATAAAAACGCCACTAAAA
Found at i:8023568 original size:27 final size:27
Alignment explanation
Indices: 8023538--8023609 Score: 144
Period size: 27 Copynumber: 2.7 Consensus size: 27
8023528 CTAACATCAA
8023538 CCAATTTGATGGTAAATGAGGTTTTAT
1 CCAATTTGATGGTAAATGAGGTTTTAT
8023565 CCAATTTGATGGTAAATGAGGTTTTAT
1 CCAATTTGATGGTAAATGAGGTTTTAT
8023592 CCAATTTGATGGTAAATG
1 CCAATTTGATGGTAAATG
8023610 GGATTTAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
CCAATTTGATGGTAAATGAGGTTTTAT
Found at i:8024375 original size:12 final size:12
Alignment explanation
Indices: 8024355--8024385 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8024345 ATATATATAT
8024355 ATACCCGGCCCG
1 ATACCCGGCCCG
*
8024367 ATACTCGGCCCG
1 ATACCCGGCCCG
8024379 ATACCCG
1 ATACCCG
8024386 TTTAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.19, C:0.45, G:0.23, T:0.13
Consensus pattern (12 bp):
ATACCCGGCCCG
Found at i:8024567 original size:20 final size:20
Alignment explanation
Indices: 8024538--8024579 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8024528 TGGTTAACGT
8024538 TTGAAAAAAGATTTTGCTTA
1 TTGAAAAAAGATTTTGCTTA
*
8024558 TTGAAGAAAGATTTTGCTTA
1 TTGAAAAAAGATTTTGCTTA
8024578 TT
1 TT
8024580 AAAGTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.43
Consensus pattern (20 bp):
TTGAAAAAAGATTTTGCTTA
Found at i:8025638 original size:13 final size:13
Alignment explanation
Indices: 8025620--8025644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8025610 CTTCAAGGTG
8025620 TTATTTTTTTTGT
1 TTATTTTTTTTGT
8025633 TTATTTTTTTTG
1 TTATTTTTTTTG
8025645 GTTTCGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (13 bp):
TTATTTTTTTTGT
Found at i:8027432 original size:131 final size:131
Alignment explanation
Indices: 8027132--8027496 Score: 432
Period size: 131 Copynumber: 2.8 Consensus size: 131
8027122 ATCGATATTG
* * * *
8027132 GGAATAATAATATCTTTTTATTTCGATTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGTTCA
1 GGAATAGTAATATCTCTTTATTTCGATTGGAGCAATAAATGTCTGCTTTAAGGCATGAGAGTTCA
* * * *
8027197 TTTATTCTCGATTGG-AATAATTCGATATTACCATTTTCTCTTGAATTAATATTGATTTTTAAGA
66 TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTTGAATCAATATTGATTTTTAAGA
8027261 A
131 A
* * * ** *
8027262 GGAATAGCAATAGCTCTTTATTTCGATTGAAGCAATAAATGTCTGCTTTAAGGTGTGAGAGATCA
1 GGAATAGTAATATCTCTTTATTTCGATTGGAGCAATAAATGTCTGCTTTAAGGCATGAGAGTTCA
* * *
8027327 TTTATTCTCGATTGGAAATCATTAGATATTATCGTTTTCACTTGAATCGATATTGATTTTTAAGA
66 TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTTGAATCAATATTGATTTTTAAGA
*
8027392 C
131 A
* * * * * *
8027393 GGAATGGTAATATCTCTTCATTTTGATCGGAG-AATTAAATGAT-TGTTTTAAGGCATGAAAGGT
1 GGAATAGTAATATCTCTTTATTTCGATTGGAGCAA-TAAATG-TCTGCTTTAAGGCATGAGA-GT
* * *
8027456 TC-GTTATTCTCAATTGAAAATAATTAGATATTATCATTTTC
63 TCATTTATTCTCGATTGGAAATAATTAGATATTATCATTTTC
8027497 TCTCTTAGAA
Statistics
Matches: 196, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
130 72 0.37
131 120 0.61
132 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.41
Consensus pattern (131 bp):
GGAATAGTAATATCTCTTTATTTCGATTGGAGCAATAAATGTCTGCTTTAAGGCATGAGAGTTCA
TTTATTCTCGATTGGAAATAATTAGATATTATCATTTTCACTTGAATCAATATTGATTTTTAAGA
A
Found at i:8033802 original size:23 final size:23
Alignment explanation
Indices: 8033776--8033823 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
8033766 ACATATTAGA
**
8033776 TAGCACTTATATAATGTAATAGG
1 TAGCACTTATATAATAAAATAGG
8033799 TAGCACTTATATAATAAAATAGG
1 TAGCACTTATATAATAAAATAGG
8033822 TA
1 TA
8033824 TTTAACCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (23 bp):
TAGCACTTATATAATAAAATAGG
Found at i:8033906 original size:23 final size:23
Alignment explanation
Indices: 8033859--8033907 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
8033849 AATAACATAT
**
8033859 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
8033882 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
8033905 TAG
1 TAG
8033908 ACATTTAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:8033971 original size:87 final size:87
Alignment explanation
Indices: 8033735--8033964 Score: 397
Period size: 87 Copynumber: 2.6 Consensus size: 87
8033725 TATGTTATAT
* * *
8033735 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGATAGCACTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
*
8033800 AGCACTTATATAATAAAATAGG
66 AGCACTTATATAATAAAATAGA
*
8033822 TATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
*
8033887 AGCGCTTATATAATAAAATAGA
66 AGCACTTATATAATAAAATAGA
*
8033909 CATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCGTATATAAT
1 CATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCTTATATAAT
8033965 AAAATAGACA
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 135 1.00
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAATACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCACTTATATAATAAAATAGA
Found at i:8034035 original size:64 final size:64
Alignment explanation
Indices: 8033882--8034028 Score: 267
Period size: 64 Copynumber: 2.3 Consensus size: 64
8033872 TATAATGTAA
8033882 TAGGTAGCGCTTATATAATAAAATAGACATTTAACCGGAAATATTATCAAATACAATAACATAT
1 TAGGTAGCGCTTATATAATAAAATAGACATTTAACCGGAAATATTATCAAATACAATAACATAT
* *
8033946 TAGGTAGCGCGTATATAATAAAATAGACATTTAACCGGAAATATTATCAAGTACAATAACATAT
1 TAGGTAGCGCTTATATAATAAAATAGACATTTAACCGGAAATATTATCAAATACAATAACATAT
*
8034010 TAGGTAACGCTTATATAAT
1 TAGGTAGCGCTTATATAAT
8034029 GTAATAGGTA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 79 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (64 bp):
TAGGTAGCGCTTATATAATAAAATAGACATTTAACCGGAAATATTATCAAATACAATAACATAT
Found at i:8034429 original size:200 final size:199
Alignment explanation
Indices: 8034046--8034500 Score: 614
Period size: 200 Copynumber: 2.3 Consensus size: 199
8034036 GTAGCGCTTA
* *
8034046 TATAATTATCGGTTTCAATGTTTTTGGGATCGATACAATTT--TAAATGTATCGACACTTTATGC
1 TATAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGC
* *
8034109 GCACACCTCGTTGGGCATTCATTCTGGAAAAAAGTATTGACACAAACTTAAAGCGTGTCGATACA
65 GCACACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAGCGTGTCGATACA
* * * *
8034174 TTATGTAGACCTATTTTCTAATAAAACCAGTATATTTCTACCTGGTACATTGTAAATTTACCTAT
130 TTATGTAGACATATTCTATAATAAAACCAGTATATTTATACCTGGTACATTGTAAATTTACCTAT
8034239 TACAT
195 TACAT
* * *
8034244 TGTAATTATCGGTTTCGATGTTTTTGAGATCGATACTTTTAATAAATGTATCTACACTTTATGCG
1 TATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG
** * * *** **
8034309 TGCACCTCGTTTGACATTCATTCTGGACAAAATGTATCGACAC-TTTTTAAATTTGTGTCGATAC
66 CACACCTCGTTGGACATTCATTCTGGA-AAAAAGTATCGACACAAACTTAAA-GCGTGTCGATAC
* * *
8034373 ATTATGTTGACATATTCTATCATAAAACCGGTATATTTATACC-GGTTACATTGTAAATTTACCT
129 ATTATGTAGACATATTCTATAATAAAACCAGTATATTTATACCTGG-TACATTGTAAATTTACCT
8034437 ATTACAT
193 ATTACAT
*
8034444 TATAATTATCGGTTTCGATGTTTTTGGGGTCGATACTTTTAGA-AAATGTATCGACAC
1 TATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTA-ATAAATGTATCGACAC
8034501 ATATGTTTAC
Statistics
Matches: 224, Mismatches: 27, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
197 3 0.01
198 33 0.15
199 52 0.23
200 135 0.60
201 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (199 bp):
TATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG
CACACCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAGCGTGTCGATACAT
TATGTAGACATATTCTATAATAAAACCAGTATATTTATACCTGGTACATTGTAAATTTACCTATT
ACAT
Found at i:8038110 original size:55 final size:55
Alignment explanation
Indices: 8038051--8038378 Score: 234
Period size: 55 Copynumber: 6.0 Consensus size: 55
8038041 AGACTTGAAA
* *
8038051 AATCTTCAAATAACGAGCCTGCTCCCTATTCATTCAGGAAGTATA-AGACTCGAAC
1 AATCTTCAAATAACGGGCCTGCTCCCTATTCCTTCAGGAAGTATAGA-ACTCGAAC
* * * * * *
8038106 AATCTTCATAA-AATGTGTCTGCTCCCTATTCGTTCAGGGAGTATA-AGACTTGAAC
1 AATCTTCA-AATAACGGGCCTGCTCCCTATTCCTTCAGGAAGTATAGA-ACTCGAAC
* * ** *
8038161 AATCTT-TAATAAACGGGTCC-ACTCCCTATTTGTTCAGGGAGTATAGAACTCGAAC
1 AATCTTCAAAT-AACGGG-CCTGCTCCCTATTCCTTCAGGAAGTATAGAACTCGAAC
* * * * * *
8038216 AATCTT-TATTAAAGGGGTCC-GCTCTCTATTCCTTCA-AAGAGTATAGAACTCGAAT
1 AATCTTCAAAT-AACGGG-CCTGCTCCCTATTCCTTCAGGA-AGTATAGAACTCGAAC
* *
8038271 AATCTTCAACA-AACGGGTCTGCTCTCTATTCCTTCA-GAGAGTATAGAACTCGAAC
1 AATCTTCAA-ATAACGGGCCTGCTCCCTATTCCTTCAGGA-AGTATAGAACTCGAAC
*
8038326 AATCTTCATAA-AATGGGTCC-GCTCCCTATT-CTATCA-GAGAGTATAGAACTCGA
1 AATCTTCA-AATAACGGG-CCTGCTCCCTATTCCT-TCAGGA-AGTATAGAACTCGA
8038379 TCTTCATAAA
Statistics
Matches: 230, Mismatches: 31, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
53 2 0.01
54 3 0.01
55 218 0.95
56 7 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (55 bp):
AATCTTCAAATAACGGGCCTGCTCCCTATTCCTTCAGGAAGTATAGAACTCGAAC
Found at i:8038204 original size:110 final size:110
Alignment explanation
Indices: 8038072--8038378 Score: 370
Period size: 110 Copynumber: 2.8 Consensus size: 110
8038062 AACGAGCCTG
* * *
8038072 CTCCCTATTCATTCAGGAAGTATA-AGACTCGAACAATCTTCATAAAATGTGTCTGCTCCCTATT
1 CTCCCTATTCATTCAGGGAGTATAGA-ACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATT
* * * *
8038136 CGTTCAGGGAGTATAAG-ACTTGAACAATCTTTAATAAACGGGTCCA
65 C-TTCAGAGAGTATAAGAACTCGAACAATCTTCAACAAACGGGTCCA
** * * * *
8038182 CTCCCTATTTGTTCAGGGAGTATAGAACTCGAACAATCTTTATTAAAGGGGTCCGCTCTCTATTC
1 CTCCCTATTCATTCAGGGAGTATAGAACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATT-
* * **
8038247 CTTCAAAGAGTAT-AGAACTCGAATAATCTTCAACAAACGGGTCTG
65 CTTCAGAGAGTATAAGAACTCGAACAATCTTCAACAAACGGGTCCA
* * *
8038292 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATTC
1 CTCCCTATTCATTCAGGGAGTATAGAACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATTC
8038357 TATCAGAGAGTAT-AGAACTCGA
66 T-TCAGAGAGTATAAGAACTCGA
8038379 TCTTCATAAA
Statistics
Matches: 167, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
109 4 0.02
110 161 0.96
111 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (110 bp):
CTCCCTATTCATTCAGGGAGTATAGAACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATTC
TTCAGAGAGTATAAGAACTCGAACAATCTTCAACAAACGGGTCCA
Found at i:8038447 original size:37 final size:37
Alignment explanation
Indices: 8038395--8038467 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
8038385 TAAAATGAGT
* *
8038395 TTGCTTCACTACTCTTCCGTGAAGGCTTAAGTTTGAA
1 TTGCTTCACTACTCTTCCGTGAAGGCGTAAGATTGAA
* * *
8038432 TTGCTTCATTGCTCTTTCGTGAAGGCGTAAGATTGA
1 TTGCTTCACTACTCTTCCGTGAAGGCGTAAGATTGA
8038468 CCTGTTTCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (37 bp):
TTGCTTCACTACTCTTCCGTGAAGGCGTAAGATTGAA
Found at i:8038713 original size:17 final size:17
Alignment explanation
Indices: 8038681--8038713 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8038671 TATCTTCATC
8038681 TCAATGCTTCAATATCT
1 TCAATGCTTCAATATCT
8038698 TCAAT-CTTCAACTATC
1 TCAATGCTTCAA-TATC
8038714 CTTGTGAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.39
Consensus pattern (17 bp):
TCAATGCTTCAATATCT
Found at i:8039760 original size:8 final size:8
Alignment explanation
Indices: 8039736--8039974 Score: 85
Period size: 8 Copynumber: 28.9 Consensus size: 8
8039726 TTGAACCCCG
8039736 TTTT-ATT
1 TTTTCATT
8039743 TTTCTC-TT
1 TTT-TCATT
8039751 TTTTCATT
1 TTTTCATT
8039759 TTTTC-TT
1 TTTTCATT
**
8039766 TTCTTTTTAT
1 TT-TTCAT-T
8039776 TTTTCATT
1 TTTTCATT
8039784 TTTTC-TT
1 TTTTCATT
8039791 CCATTTTC-TAT
1 ---TTTTCAT-T
8039802 TTTTC-TT
1 TTTTCATT
*
8039809 TTTTCCTT
1 TTTTCATT
8039817 TTTTC---
1 TTTTCATT
*
8039822 TTTTCCTT
1 TTTTCATT
*
8039830 TTTTCCTTT
1 TTTT-CATT
8039839 TTTTCATTT
1 TTTTCA-TT
8039848 TTTTCATTT
1 TTTTCA-TT
*
8039857 TTCTTCTCTT
1 TT-TTC-ATT
8039867 CTTTTC-TT
1 -TTTTCATT
8039875 CTTTTC-TT
1 -TTTTCATT
8039883 CTTTTCATTT
1 -TTTTCA-TT
8039893 TTTCATCATT
1 TTT--TCATT
8039903 TTTTCATT
1 TTTTCATT
*
8039911 TTTCTCTCTT
1 TTT-TC-ATT
8039921 TTTTC-TT
1 TTTTCATT
8039928 TTTTCATT
1 TTTTCATT
*
8039936 TTCTT-TTT
1 TT-TTCATT
8039944 TTTATCA-T
1 TTT-TCATT
8039952 TTTTC-TT
1 TTTTCATT
*
8039959 TTCTTCTTT
1 TT-TTCATT
8039968 TTTTCAT
1 TTTTCAT
8039975 CTATTTTTTA
Statistics
Matches: 190, Mismatches: 10, Indels: 63
0.72 0.04 0.24
Matches are distributed among these distances:
5 5 0.03
7 30 0.16
8 83 0.44
9 37 0.19
10 29 0.15
11 6 0.03
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTCATT
Found at i:8039832 original size:53 final size:52
Alignment explanation
Indices: 8039740--8039944 Score: 188
Period size: 53 Copynumber: 3.8 Consensus size: 52
8039730 ACCCCGTTTT
*
8039740 ATTTTTCTCTTTTTTCATTTTTTC--TTTTCTTTT-TATTTTTCATTTTTTCTTCC
1 ATTTTT-TCATTTTTC-TTTTTTCTTTTTTCTTTTCT-TTTTTCATTTTTTCTT-C
* *
8039793 ATTTTCT-ATTTTTCTTTTTTCCTTTTTTCTTTTCCTTTTTTC-CTTTTT-TTC
1 ATTTTTTCATTTTTCTTTTTT-CTTTTTTCTTTT-CTTTTTTCATTTTTTCTTC
* *
8039844 ATTTTTTTCATTTTTCTTCTCTTCTTTTCTTCTTTTCTTCTTTTCATTTTTTCATC
1 A-TTTTTTCATTTTTCTT-TTTTCTTTT-TTCTTTTCTT-TTTTCATTTTTTCTTC
8039900 ATTTTTTCATTTTTCTCTCTTTTTTCTTTTTTCATTTTCTTTTTT
1 ATTTTTTCA--TTT-T-TCTTTTTTCTTTTTTC-TTTTCTTTTTT
8039945 TTATCATTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 30
0.77 0.05 0.18
Matches are distributed among these distances:
50 6 0.05
51 9 0.07
52 8 0.06
53 36 0.28
54 21 0.17
55 14 0.11
56 3 0.02
57 10 0.08
58 16 0.13
59 4 0.03
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (52 bp):
ATTTTTTCATTTTTCTTTTTTCTTTTTTCTTTTCTTTTTTCATTTTTTCTTC
Found at i:8039842 original size:97 final size:97
Alignment explanation
Indices: 8039741--8039974 Score: 250
Period size: 97 Copynumber: 2.4 Consensus size: 97
8039731 CCCCGTTTTA
*
8039741 TTTTTCTCTTTTTTCATTTTTTCTTTTCTTTTTATTTTTCATTTT-TTC-TTCCA-TTTTC-T-A
1 TTTTTCT-TTTTTTCA-TTTTTCTTTTCTTCTT-TTTTTCATTTTCTTCTTTCCATTTTTCATCA
* * * *
8039801 -TTTTTCTTTTTTCCTTTTTTCTTTTCCTTTTTTCCTT
63 TTTTTTCATTTTT-CTCTCTT-TTTT-CTTTTTTCATT
* * *
8039838 TTTTTCATTTTTTTCATTTTTCTTCTCTTCTTTTCTTC-TTTTCTTCTTTTCATTTTTTCATCAT
1 TTTTTC-TTTTTTTCATTTTTCTTTTCTTCTTTTTTTCATTTTCTTCTTTCCA-TTTTTCATCAT
8039902 TTTTTCATTTTTCTCTCTTTTTTCTTTTTTCATT
64 TTTTTCATTTTTCTCTCTTTTTTCTTTTTTCATT
*
8039936 TTCTTT-TTTTTATCATTTTTCTTTTCTTCTTTTTTTCAT
1 TT-TTTCTTTTTTTCATTTTTCTTTTCTTCTTTTTTTCAT
8039975 CTATTTTTTA
Statistics
Matches: 116, Mismatches: 11, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
94 4 0.03
95 8 0.07
96 18 0.16
97 42 0.36
98 19 0.16
99 8 0.07
100 6 0.05
101 11 0.09
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.75
Consensus pattern (97 bp):
TTTTTCTTTTTTTCATTTTTCTTTTCTTCTTTTTTTCATTTTCTTCTTTCCATTTTTCATCATTT
TTTCATTTTTCTCTCTTTTTTCTTTTTTCATT
Found at i:8039908 original size:19 final size:18
Alignment explanation
Indices: 8039741--8039974 Score: 97
Period size: 18 Copynumber: 13.0 Consensus size: 18
8039731 CCCCGTTTTA
8039741 TTTTTC-TCTTTTTTCAT
1 TTTTTCATCTTTTTTCAT
* *
8039758 TTTTTC-TTTTCTTTTTA-
1 TTTTTCATCTT-TTTTCAT
*
8039775 TTTTTCATTTTTTCTTCCATT
1 TTTTTCATCTTTT-TT-CA-T
** *
8039796 TTCTATTTTTCTTTTTTCCT
1 TT-T-TTCATCTTTTTTCAT
* *
8039816 TTTTTCTTTTCCTTTTTTCCTT
1 TTTTTC--AT-CTTTTTT-CAT
8039838 TTTTTCAT-TTTTTTCATT
1 TTTTTCATCTTTTTTCA-T
8039856 TTTCTTC-TCTTCTTTTC-T
1 TTT-TTCATCTT-TTTTCAT
*
8039874 TCTTTTC-T-TCTTTTCAT
1 T-TTTTCATCTTTTTTCAT
8039891 TTTTTCATCATTTTTTCAT
1 TTTTTCATC-TTTTTTCAT
8039910 TTTTCTC-TCTTTTTTC-T
1 TTTT-TCATCTTTTTTCAT
*
8039927 TTTTTCAT-TTTCTT--T
1 TTTTTCATCTTTTTTCAT
*
8039942 TTTTT-ATCATTTTTC-T
1 TTTTTCATCTTTTTTCAT
8039958 TTTCTTC-T-TTTTTTCAT
1 TTT-TTCATCTTTTTTCAT
8039975 CTATTTTTTA
Statistics
Matches: 172, Mismatches: 17, Indels: 56
0.70 0.07 0.23
Matches are distributed among these distances:
14 2 0.01
15 10 0.06
16 27 0.16
17 32 0.19
18 37 0.22
19 23 0.13
20 13 0.08
21 10 0.06
22 11 0.06
23 7 0.04
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTCATCTTTTTTCAT
Found at i:8039955 original size:18 final size:16
Alignment explanation
Indices: 8039749--8039960 Score: 58
Period size: 15 Copynumber: 13.1 Consensus size: 16
8039739 TATTTTTCTC
8039749 TTTTTTCATTTTTTCTTT
1 TTTTTTCA--TTTTCTTT
8039767 TCTTTTT-ATTTTTCATTT
1 T-TTTTTCA-TTTTC-TTT
*
8039785 TTTCTTCCATTTTC--T
1 TTT-TTTCATTTTCTTT
* *
8039800 ATTTTTC-TTTT-TTCC
1 TTTTTTCATTTTCTT-T
8039815 TTTTTTC-TTTTCCTTT
1 TTTTTTCATTTT-CTTT
*
8039831 TTTCCTTT--TTTTC-AT
1 TTT--TTTCATTTTCTTT
*
8039846 TTTTTTCATTTT-TCT
1 TTTTTTCATTTTCTTT
* *
8039861 TCTCTTC-TTTTCTTCT
1 TTTTTTCATTTTCTT-T
*
8039877 TTTCTTC-TTTTCATTT
1 TTTTTTCATTTTC-TTT
**
8039893 TTTCATCATTTT-TTCAT
1 TTTTTTCATTTTCTT--T
*
8039910 TTTTCTCTC-TTTT-TTC
1 TTTT-T-TCATTTTCTTT
8039926 TTTTTTCATTTTCTTT
1 TTTTTTCATTTTCTTT
8039942 TTTTTATCATTTTTCTTT
1 TTTTT-TCA-TTTTCTTT
8039960 T
1 T
8039961 CTTCTTTTTT
Statistics
Matches: 151, Mismatches: 17, Indels: 52
0.69 0.08 0.24
Matches are distributed among these distances:
13 7 0.05
14 9 0.06
15 35 0.23
16 34 0.23
17 27 0.18
18 31 0.21
19 8 0.05
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTTCATTTTCTTT
Found at i:8046459 original size:45 final size:47
Alignment explanation
Indices: 8046392--8046502 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 47
8046382 CCATGCTTTG
*
8046392 TTATTCACAAAAAGAAATCCTAACTGCATGATATCTAATTCGCATGC-
1 TTATTCA-AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
* *
8046439 TTATTCAAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCA
1 TTATTCAAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
8046485 TTTATTCAAAAAACGAAA
1 -TTATTCAAAAAA-GAAA
8046503 ATAAATGACT
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 27 0.47
46 8 0.14
47 19 0.33
48 3 0.05
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (47 bp):
TTATTCAAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
Found at i:8051575 original size:14 final size:15
Alignment explanation
Indices: 8051547--8051576 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8051537 TAATTAAAAT
8051547 TAATATATCTTATAA
1 TAATATATCTTATAA
8051562 TAATATAT-TTATAA
1 TAATATATCTTATAA
8051576 T
1 T
8051577 TATTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATATATCTTATAA
Found at i:8051644 original size:42 final size:41
Alignment explanation
Indices: 8051563--8051663 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 41
8051553 ATCTTATAAT
**
8051563 AATATA-TTTATAATTATTTATTATATTTTAAATGGTTAAAAC
1 AATATATTTTATAA-TATTTATTATATTTTAAATAATT-AAAC
* * *
8051605 AATATATTTTATAATATTTTTTATATTTTTAATAATTAAAG
1 AATATATTTTATAATATTTATTATATTTTAAATAATTAAAC
*
8051646 AACATATTTTAATAATAT
1 AATATATTTT-ATAATAT
8051664 AAAATTAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
41 12 0.24
42 32 0.63
43 7 0.14
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (41 bp):
AATATATTTTATAATATTTATTATATTTTAAATAATTAAAC
Found at i:8052769 original size:55 final size:55
Alignment explanation
Indices: 8052687--8052791 Score: 174
Period size: 55 Copynumber: 1.9 Consensus size: 55
8052677 GTTCAAAAGA
* *
8052687 CGTGCGTCAACACCGCACGTTAAGAGTAAGGATTTCCTTTGTCACGTACAATATG
1 CGTGCGTCAACACCGCACGTCAAGAGTAAGGATTTCCTTTATCACGTACAATATG
**
8052742 CGTGCGTCAACACCGTGCGTCAAGAGTAAGGATTTCCTTTATCACGTACA
1 CGTGCGTCAACACCGCACGTCAAGAGTAAGGATTTCCTTTATCACGTACA
8052792 TCATTTTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (55 bp):
CGTGCGTCAACACCGCACGTCAAGAGTAAGGATTTCCTTTATCACGTACAATATG
Found at i:8057130 original size:14 final size:14
Alignment explanation
Indices: 8057111--8057143 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
8057101 TTTAACCTAT
8057111 CACACCTACCATCC
1 CACACCTACCATCC
8057125 CACACCTACCATCC
1 CACACCTACCATCC
8057139 CACAC
1 CACAC
8057144 TCTAGGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.58, G:0.00, T:0.12
Consensus pattern (14 bp):
CACACCTACCATCC
Found at i:8059256 original size:17 final size:15
Alignment explanation
Indices: 8059226--8059278 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
8059216 ATAGAGAGAG
8059226 AAATAAAGATATAAA
1 AAATAAAGATATAAA
8059241 AAATAAAAGAATATAAA
1 AAAT-AAAG-ATATAAA
*
8059258 GAAAGAAAG-TATAAA
1 -AAATAAAGATATAAA
8059273 AGAATA
1 A-AATA
8059279 TTTACTCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
14 1 0.03
15 13 0.41
16 4 0.12
17 11 0.34
18 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (15 bp):
AAATAAAGATATAAA
Found at i:8059257 original size:25 final size:25
Alignment explanation
Indices: 8059224--8059279 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
8059214 ATATAGAGAG
* *
8059224 AGAA-ATAAAGATATAAAAAATAAA
1 AGAATATAAAGAAAGAAAAAATAAA
**
8059248 AGAATATAAAGAAAGAAAGTATAAA
1 AGAATATAAAGAAAGAAAAAATAAA
8059273 AGAATAT
1 AGAATAT
8059280 TTACTCTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (25 bp):
AGAATATAAAGAAAGAAAAAATAAA
Found at i:8066217 original size:9 final size:9
Alignment explanation
Indices: 8066191--8066220 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
8066181 AGAACAGTGG
*
8066191 AGAAGATGG
1 AGAAGATGA
8066200 AGAAGATGA
1 AGAAGATGA
8066209 AGAAGATGA
1 AGAAGATGA
8066218 AGA
1 AGA
8066221 TTTTTCTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.37, T:0.10
Consensus pattern (9 bp):
AGAAGATGA
Found at i:8068823 original size:21 final size:22
Alignment explanation
Indices: 8068787--8068829 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
8068777 TTAAAAATTA
8068787 TAAAGGAAGTACCGATACTCAT
1 TAAAGGAAGTACCGATACTCAT
*
8068809 TAAAGG-AGTATCGATACTCAT
1 TAAAGGAAGTACCGATACTCAT
8068830 AGCCTTGGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (22 bp):
TAAAGGAAGTACCGATACTCAT
Found at i:8072020 original size:20 final size:20
Alignment explanation
Indices: 8071995--8072038 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
8071985 AAACAGTACT
*
8071995 GATACTATTTATGTGGTATC
1 GATACTATTCATGTGGTATC
*
8072015 GATACTATTCATGTGGTATT
1 GATACTATTCATGTGGTATC
8072035 GATA
1 GATA
8072039 GCAAATGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.43
Consensus pattern (20 bp):
GATACTATTCATGTGGTATC
Found at i:8074459 original size:22 final size:22
Alignment explanation
Indices: 8074433--8074502 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 22
8074423 AGAATATATG
8074433 TCTAGAAATATTTATAAAATAA
1 TCTAGAAATATTTATAAAATAA
**
8074455 TCTAG--ATATTTATATTAT-A
1 TCTAGAAATATTTATAAAATAA
* *
8074474 TCTAGAATTATTTATTAGAATAA
1 TCTAGAAATATTTA-TAAAATAA
8074497 TCTAGA
1 TCTAGA
8074503 TACTTGTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.15
20 11 0.28
21 6 0.15
22 9 0.23
23 7 0.18
ACGTcount: A:0.44, C:0.06, G:0.07, T:0.43
Consensus pattern (22 bp):
TCTAGAAATATTTATAAAATAA
Found at i:8078050 original size:52 final size:52
Alignment explanation
Indices: 8077988--8078103 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
8077978 TTTAATTTTA
* *
8077988 ATATTAATTTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAT
1 ATATTAATTTTTTAAATAAATTAAATATTAATTTGTTAATATTATATTATAG
8078040 ATATTAATTTTTTAAATAAATTAAATATTAATTTGTTAATATTATATTATAG
1 ATATTAATTTTTTAAATAAATTAAATATTAATTTGTTAATATTATATTATAG
8078092 ATATTTAATTTT
1 ATA-TTAATTTT
8078104 ATATCATATA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 53 0.87
53 8 0.13
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (52 bp):
ATATTAATTTTTTAAATAAATTAAATATTAATTTGTTAATATTATATTATAG
Found at i:8078051 original size:28 final size:24
Alignment explanation
Indices: 8077987--8078078 Score: 130
Period size: 24 Copynumber: 3.7 Consensus size: 24
8077977 TTTTAATTTT
8077987 AATATTAATTTTTTAAATAAATTA
1 AATATTAATTTTTTAAATAAATTA
*
8078011 AATATTAATTTTTTAATATTATATTA
1 AATATTAATTTTTTAA-A-TAAATTA
8078037 TATATATTAATTTTTTAAATAAATTA
1 -A-ATATTAATTTTTTAAATAAATTA
*
8078063 AATATTAATTTGTTAA
1 AATATTAATTTTTTAA
8078079 TATTATATTA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
24 30 0.49
25 2 0.03
26 12 0.20
27 2 0.03
28 15 0.25
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (24 bp):
AATATTAATTTTTTAAATAAATTA
Found at i:8078159 original size:20 final size:19
Alignment explanation
Indices: 8078099--8078160 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
8078089 TAGATATTTA
*
8078099 ATTTTATATCA-TATAAATT
1 ATTTTATAT-ATTATTAATT
*
8078118 ATTTTATATATTATTAA-A
1 ATTTTATATATTATTAATT
8078136 ATTTTATAT-TTATTTTAATT
1 ATTTTATATATTA--TTAATT
8078156 ATTTT
1 ATTTT
8078161 GATTTAAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 3 0.08
18 10 0.28
19 18 0.50
20 5 0.14
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTATATATTATTAATT
Found at i:8081792 original size:21 final size:21
Alignment explanation
Indices: 8081768--8081815 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
8081758 TTATCTTTGT
*
8081768 AGAATATAAACTACAAAGAAA
1 AGAAGATAAACTACAAAGAAA
*
8081789 AGAAGATAAGCTACAAAGAAA
1 AGAAGATAAACTACAAAGAAA
8081810 AGAAGA
1 AGAAGA
8081816 AGATGGTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.65, C:0.08, G:0.17, T:0.10
Consensus pattern (21 bp):
AGAAGATAAACTACAAAGAAA
Found at i:8093002 original size:32 final size:32
Alignment explanation
Indices: 8092959--8093021 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
8092949 GGCACCAACG
*
8092959 CCGCAATAGGTTTGATATTTA-TAGGCGTTTTC
1 CCGCAACAGGTTTGATATTTAGTA-GCGTTTTC
*
8092991 CCGCAACAGGTTTGCTATTTAGTAGCGTTTT
1 CCGCAACAGGTTTGATATTTAGTAGCGTTTT
8093022 TAGTCACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 26 0.93
33 2 0.07
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (32 bp):
CCGCAACAGGTTTGATATTTAGTAGCGTTTTC
Found at i:8093445 original size:12 final size:12
Alignment explanation
Indices: 8093418--8093458 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
8093408 GAAATGTTGT
8093418 TTCTCTCTCTGC
1 TTCTCTCTCTGC
8093430 --CTCTCTCTGC
1 TTCTCTCTCTGC
* *
8093440 TTCTCTCACTAC
1 TTCTCTCTCTGC
8093452 TTCTCTC
1 TTCTCTC
8093459 ATTGCTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 10 0.40
12 15 0.60
ACGTcount: A:0.05, C:0.44, G:0.05, T:0.46
Consensus pattern (12 bp):
TTCTCTCTCTGC
Found at i:8112224 original size:80 final size:80
Alignment explanation
Indices: 8112091--8112250 Score: 284
Period size: 80 Copynumber: 2.0 Consensus size: 80
8112081 ACCATTCACA
*
8112091 GGCATCTTTTTCGGTCAGAATAAGTTTAGCAACAAAGCGACTTAACTTATTGAACTCACACTCGT
1 GGCATCTTTTTCGGTCAGAATAAGTTTAGCAACAAAACGACTTAACTTATTGAACTCACACTCGT
8112156 ATTCATACACAGTGT
66 ATTCATACACAGTGT
* *
8112171 GGCATCTTTTTCGGTTAGAATAAGTTTAGCAGCAAAACGACTTAACTTATTGAACTCACACTCGT
1 GGCATCTTTTTCGGTCAGAATAAGTTTAGCAACAAAACGACTTAACTTATTGAACTCACACTCGT
*
8112236 ATTCATACATAGTGT
66 ATTCATACACAGTGT
8112251 AATTCAACTG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (80 bp):
GGCATCTTTTTCGGTCAGAATAAGTTTAGCAACAAAACGACTTAACTTATTGAACTCACACTCGT
ATTCATACACAGTGT
Found at i:8118548 original size:41 final size:41
Alignment explanation
Indices: 8118498--8118619 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
8118488 GTTTGAACAA
* *
8118498 AAACGCCACTAAAATAAGAGTCTATAGCGACGTTTATATAT
1 AAACGCCACTAAAATAAGAGTCTATAGCGACGTTTGTATAC
** * * * *
8118539 AAATTCCACTAAAGTACGAGTTTATAGCGGCGTTTGTATAC
1 AAACGCCACTAAAATAAGAGTCTATAGCGACGTTTGTATAC
** *
8118580 AAACGCCAC-AAAAGTCTGAGTCTTTAGCGACGTTTGTATA
1 AAACGCCACTAAAA-TAAGAGTCTATAGCGACGTTTGTATA
8118620 ATTAAGAGTA
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 3 0.05
41 61 0.95
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (41 bp):
AAACGCCACTAAAATAAGAGTCTATAGCGACGTTTGTATAC
Found at i:8123737 original size:22 final size:22
Alignment explanation
Indices: 8123706--8123756 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
8123696 AAATATATTA
*
8123706 AAAAAATAAATATAAAAATACT
1 AAAAAATAAAAATAAAAATACT
* * *
8123728 AAAAAGTAAAAATTAAATTACT
1 AAAAAATAAAAATAAAAATACT
8123750 AAAAAAT
1 AAAAAAT
8123757 TATATATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAAAATAAAAATAAAAATACT
Found at i:8123762 original size:2 final size:2
Alignment explanation
Indices: 8123757--8123797 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8123747 ACTAAAAAAT
8123757 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8123798 TAAGAAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8124248 original size:26 final size:25
Alignment explanation
Indices: 8124212--8124262 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
8124202 TAAATTTTAA
8124212 TTTTATAACTTCTA-AAT-TTTATTT
1 TTTTATAACTT-TATAATATTTATTT
8124236 TTTTATAAGACTTTATAATATTTATTT
1 TTTTAT-A-ACTTTATAATATTTATTT
8124263 AATTCAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
24 6 0.26
25 3 0.13
26 7 0.30
27 7 0.30
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (25 bp):
TTTTATAACTTTATAATATTTATTT
Found at i:8124293 original size:24 final size:24
Alignment explanation
Indices: 8124247--8124293 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8124237 TTTATAAGAC
* * * *
8124247 TTTATAATATTTATTTAATTCAAT
1 TTTATAAAATTTAATGAAATCAAT
8124271 TTTATAAAATTTAATGAAATCAA
1 TTTATAAAATTTAATGAAATCAA
8124294 ATCCAAATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (24 bp):
TTTATAAAATTTAATGAAATCAAT
Found at i:8145957 original size:21 final size:22
Alignment explanation
Indices: 8145921--8145966 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8145911 TTAATTTTAA
8145921 AAAATTTAAAAATTTAAATATT
1 AAAATTTAAAAATTTAAATATT
* *
8145943 AAAATTT-ATAATTTAAGTATT
1 AAAATTTAAAAATTTAAATATT
8145964 AAA
1 AAA
8145967 CGAATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAATTTAAAAATTTAAATATT
Found at i:8146446 original size:21 final size:20
Alignment explanation
Indices: 8146422--8146634 Score: 116
Period size: 21 Copynumber: 10.2 Consensus size: 20
8146412 CATATTCGCA
8146422 TTGCGATAGTCAAAGTTCGCG
1 TTGCGATAGTCAAAGTTC-CG
*
8146443 TTGCGATTTATTCCAAA-TT-CG
1 TTGCGA--TAGT-CAAAGTTCCG
* *
8146464 TTGCGATAATCCAAGTTCGCG
1 TTGCGATAGTCAAAGTTC-CG
* *
8146485 TTGCGATTTATTCCAAGTT-CG
1 TTGCGA--TAGTCAAAGTTCCG
*
8146506 TTGCGATAGTCGAAGTTCGCG
1 TTGCGATAGTCAAAGTTC-CG
* *
8146527 TTGCGATTTATTCTAAGTT-CG
1 TTGCGA--TAGTCAAAGTTCCG
* * *
8146548 TTGCGGTAGTCGAAGTTCGCA
1 TTGCGATAGTCAAAGTTC-CG
*
8146569 TTGCGATTTATTCCAAA-TT-CG
1 TTGCGA--TAGT-CAAAGTTCCG
*
8146590 TTGCGATAGTCCAAGTT-CG
1 TTGCGATAGTCAAAGTTCCG
*
8146609 TTGCGATAGTCGAAGTTCACG
1 TTGCGATAGTCAAAGTTC-CG
8146630 TTGCG
1 TTGCG
8146635 TTTATTCCAA
Statistics
Matches: 153, Mismatches: 19, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
18 6 0.04
19 46 0.30
21 65 0.42
23 29 0.19
24 7 0.05
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.35
Consensus pattern (20 bp):
TTGCGATAGTCAAAGTTCCG
Found at i:8146480 original size:42 final size:42
Alignment explanation
Indices: 8146422--8146615 Score: 293
Period size: 42 Copynumber: 4.7 Consensus size: 42
8146412 CATATTCGCA
*
8146422 TTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* *
8146464 TTGCGATAATCCAAGTTCGCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* * *
8146506 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAGTTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
* * *
8146548 TTGCGGTAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
8146590 TTGCGATAGTCCAAGTT--CGTTGCGAT
1 TTGCGATAGTCCAAGTTCGCGTTGCGAT
8146616 AGTCGAAGTT
Statistics
Matches: 139, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 8 0.06
42 131 0.94
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (42 bp):
TTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCG
Found at i:8146515 original size:84 final size:84
Alignment explanation
Indices: 8146397--8146615 Score: 295
Period size: 84 Copynumber: 2.6 Consensus size: 84
8146387 ACTTCGACTA
*
8146397 TCGCATTGCGATTTA---CATATTCGCATTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAA
1 TCGCATTGCGATTTATTCCAAATTCG--TTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAA
8146459 ATTCGTTGCGATAATCCAAGT
64 ATTCGTTGCGATAATCCAAGT
* * * * *
8146480 TCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCTAAGT
1 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAAAT
* * *
8146545 TCGTTGCGGTAGTCGAAGT
66 TCGTTGCGATAATCCAAGT
*
8146564 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCCAAGTT--CGTTGCGAT
1 TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCAAAGTTCGCGTTGCGAT
8146616 AGTCGAAGTT
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
82 9 0.07
83 14 0.12
84 92 0.76
86 6 0.05
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (84 bp):
TCGCATTGCGATTTATTCCAAATTCGTTGCGATAGTCAAAGTTCGCGTTGCGATTTATTCCAAAT
TCGTTGCGATAATCCAAGT
Found at i:8146755 original size:5 final size:5
Alignment explanation
Indices: 8146745--8146796 Score: 70
Period size: 5 Copynumber: 10.6 Consensus size: 5
8146735 GACCACGACC
* * *
8146745 ACGAG ACGAG ACGAG ACGAG ACGAG ACGAC CCGAG ATGAG ACGAG ACG-G
1 ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG ACGAG
8146794 ACG
1 ACG
8146797 GCGGCGGCGG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
4 4 0.10
5 37 0.90
ACGTcount: A:0.37, C:0.23, G:0.38, T:0.02
Consensus pattern (5 bp):
ACGAG
Found at i:8147523 original size:21 final size:21
Alignment explanation
Indices: 8147497--8147570 Score: 121
Period size: 21 Copynumber: 3.5 Consensus size: 21
8147487 GTTCCGACTA
8147497 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
8147518 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
8147539 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
8147560 TCACGTTGCGA
1 TCGCATTGCGA
8147571 ATCTGGAAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:8150078 original size:129 final size:129
Alignment explanation
Indices: 8149848--8150104 Score: 496
Period size: 129 Copynumber: 2.0 Consensus size: 129
8149838 AACCGAGTTC
8149848 AAACGTCGAACATATAAAGGGTTCATAAATTTACGAAACATGCTTAGAGTATTTTAGTCTTACGT
1 AAACGTCGAACATATAAAGGGTTCATAAATTTACGAAACATGCTTAGAGTATTTTAGTCTTACGT
*
8149913 AATCATGCCAAAACTGAAAATTTAAGCTATCATACGTCAATACAGCATGCATATATGTATCACG
66 AATCATGCCAAAACTGAAAATTTAAGCTATCATACGTCAATACAACATGCATATATGTATCACG
*
8149977 AAACGTCGAACATATAAAGGGTTCATAAATTTAGGAAACATGCTTAGAGTATTTTAGTCTTACGT
1 AAACGTCGAACATATAAAGGGTTCATAAATTTACGAAACATGCTTAGAGTATTTTAGTCTTACGT
8150042 AATCATGCCAAAACTGAAAATTTAAGCTATCATACGTCAATACAACATGCATATATGTATCAC
66 AATCATGCCAAAACTGAAAATTTAAGCTATCATACGTCAATACAACATGCATATATGTATCAC
8150105 ACAAAATTAC
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 126 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (129 bp):
AAACGTCGAACATATAAAGGGTTCATAAATTTACGAAACATGCTTAGAGTATTTTAGTCTTACGT
AATCATGCCAAAACTGAAAATTTAAGCTATCATACGTCAATACAACATGCATATATGTATCACG
Found at i:8150914 original size:36 final size:37
Alignment explanation
Indices: 8150851--8151153 Score: 183
Period size: 39 Copynumber: 8.3 Consensus size: 37
8150841 ACGGTTTTCT
* * * *
8150851 AAAATATATATATTATATA-ATTTTGAAAA-AATTTG
1 AAAACATATATAATATATAGTTTTTGAAAATATTTTG
* *
8150886 AAAACATATATAATGTATAGTTTTTGAAAATGCTTTTG
1 AAAACATATATAATATATAGTTTTTGAAAAT-ATTTTG
8150924 -AAA-ATATATAATATATAG-TTTTG-AAATCATTTTG
1 AAAACATATATAATATATAGTTTTTGAAAAT-ATTTTG
*
8150958 AATATATATATATAATATATAGTTTTT-AAAATATTTTTG
1 AA-A-ACATATATAATATATAGTTTTTGAAAATA-TTTTG
* * *
8150997 AAAAAACTTATATAATATATAG-TTTTAAAAAGCATTTTTG
1 --AAAACATATATAATATATAGTTTTTGAAAA-TA-TTTTG
* * * *
8151037 AAAAAATTATATAATATATCG-TTTTAAAAACATTTTTCG
1 AAAACA-TATATAATATATAGTTTTTGAAAATA-TTTT-G
*
8151076 AAAAC-T-TAT-ATA-ATA-TTTTT-AAAATCGTTTTTG
1 AAAACATATATAATATATAGTTTTTGAAAAT--ATTTTG
* * *
8151109 AGAAC-TATATAATATATAG-TTTTGAAAACTTTTTTT
1 AAAACATATATAATATATAGTTTTTGAAAA-TATTTTG
8151145 AAAA-ATATA
1 AAAACATATA
8151154 ATATATTGTT
Statistics
Matches: 220, Mismatches: 22, Indels: 51
0.75 0.08 0.17
Matches are distributed among these distances:
33 10 0.05
34 22 0.10
35 28 0.13
36 46 0.21
37 9 0.04
38 36 0.16
39 59 0.27
40 8 0.04
41 2 0.01
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (37 bp):
AAAACATATATAATATATAGTTTTTGAAAATATTTTG
Found at i:8150933 original size:38 final size:38
Alignment explanation
Indices: 8150882--8151136 Score: 184
Period size: 39 Copynumber: 6.9 Consensus size: 38
8150872 TTTGAAAAAA
* *
8150882 TTTGAAAACATATATAATGTATAGTTTTTGAAAATGC-T
1 TTTGAAAAAATATATAATATATAGTTTTT-AAAATGCAT
*
8150920 TTTG--AAAATATATAATATATAG-TTTTGAAAT-CAT
1 TTTGAAAAAATATATAATATATAGTTTTTAAAATGCAT
*
8150954 TTTGAATATATATATATAATATATAGTTTTTAAAAT--ATT
1 TTTGAA-A-AAATATATAATATATAGTTTTTAAAATGCA-T
*
8150993 TTTGAAAAAACTTATATAATATATAG-TTTTAAAAAGCATT
1 TTTGAAAAAA--TATATAATATATAGTTTTTAAAATGCA-T
* *
8151033 TTTGAAAAAATTATATAATATATCG-TTTTAAAA-ACATT
1 TTTGAAAAAA-TATATAATATATAGTTTTTAAAATGCA-T
* *
8151071 TTTCG-AAAACT-TAT-ATA-ATA-TTTTTAAAAT-CGTT
1 TTT-GAAAAAATATATAATATATAGTTTTTAAAATGC-AT
* * *
8151105 TTTG-AGAACTATATAATATATAGTTTTGAAAA
1 TTTGAAAAAATATATAATATATAGTTTTTAAAA
8151137 CTTTTTTTAA
Statistics
Matches: 184, Mismatches: 14, Indels: 39
0.78 0.06 0.16
Matches are distributed among these distances:
33 7 0.04
34 27 0.15
35 10 0.05
36 22 0.12
37 12 0.07
38 41 0.22
39 52 0.28
40 13 0.07
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (38 bp):
TTTGAAAAAATATATAATATATAGTTTTTAAAATGCAT
Found at i:8151009 original size:39 final size:38
Alignment explanation
Indices: 8150851--8151091 Score: 203
Period size: 39 Copynumber: 6.4 Consensus size: 38
8150841 ACGGTTTTCT
* * * *
8150851 AAAATATATATATTATATAATTTTGAAAA-A-ATTTGAA
1 AAAAT-TATATAATATATAGTTTTTAAAATATTTTTGAA
* * **
8150888 AACA-TATATAATGTATAGTTTTTGAAAATGCTTTTG--
1 AAAATTATATAATATATAGTTTTT-AAAATATTTTTGAA
*
8150924 AAAA-TATATAATATATAG-TTTTGAAATCA-TTTTGAA
1 AAAATTATATAATATATAGTTTTTAAAAT-ATTTTTGAA
* *
8150960 TATATATATATAATATATAGTTTTTAAAATATTTTTGAA
1 AAAAT-TATATAATATATAGTTTTTAAAATATTTTTGAA
* *
8150999 AAAACTTATATAATATATAGTTTTAAAAAGCATTTTTGAA
1 AAAA-TTATATAATATATAGTTTTTAAAA-TATTTTTGAA
* * *
8151039 AAAATTATATAATATATCGTTTTAAAAACATTTTTCG-A
1 AAAATTATATAATATATAGTTTTTAAAATATTTTT-GAA
*
8151077 AAACTTATATAATAT
1 AAAATTATATAATAT
8151092 TTTTAAAATC
Statistics
Matches: 171, Mismatches: 20, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
34 9 0.05
35 19 0.11
36 22 0.13
37 3 0.02
38 41 0.24
39 63 0.37
40 14 0.08
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (38 bp):
AAAATTATATAATATATAGTTTTTAAAATATTTTTGAA
Found at i:8151126 original size:77 final size:78
Alignment explanation
Indices: 8150891--8151091 Score: 188
Period size: 77 Copynumber: 2.6 Consensus size: 78
8150881 ATTTGAAAAC
* ** * *
8150891 ATATATAATGTATAGTTTTTGAAA-ATGCTTTTG-AAAA--TATATAATATATAGTTTT-GAAAT
1 ATATATAATATATAGTTTTAAAAACAT--TTTTGAAAAACTTATATAATATATA-TTTTAAAAAG
*
8150951 CA-TTTTGAATATAT-
63 CATTTTTGAAAATATA
* *
8150965 ATATATAATATATAGTTTTTAAAATATTTTTGAAAAAACTTATATAATATATAGTTTTAAAAAGC
1 ATATATAATATATAGTTTTAAAAACATTTTTG-AAAAACTTATATAATATATA-TTTTAAAAAGC
8151030 ATTTTTGAAAA-A-A
64 ATTTTTGAAAATATA
* *
8151043 TTATATAATATATCGTTTTAAAAACATTTTTCG-AAAACTTATATAATAT
1 ATATATAATATATAGTTTTAAAAACATTTTT-GAAAAACTTATATAATAT
8151092 TTTTAAAATC
Statistics
Matches: 109, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
73 5 0.05
74 22 0.20
75 6 0.06
77 34 0.31
78 33 0.30
79 9 0.08
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (78 bp):
ATATATAATATATAGTTTTAAAAACATTTTTGAAAAACTTATATAATATATATTTTAAAAAGCAT
TTTTGAAAATATA
Found at i:8151190 original size:31 final size:30
Alignment explanation
Indices: 8151115--8151196 Score: 74
Period size: 31 Copynumber: 2.6 Consensus size: 30
8151105 TTTGAGAACT
*
8151115 ATATAATATATAGTTTTGAAAACTTTTTTTAAAA
1 ATATAATATATAG-TTT---AATTTTTTTTAAAA
* *
8151149 ATATAATATATTGTTTAATTTTTTTTGAAAT
1 ATATAATATATAGTTTAATTTTTTTT-AAAA
**
8151180 ATATGTTATATAGTTTA
1 ATATAATATATAGTTTA
8151197 TATTATATTA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 9 0.22
31 17 0.41
33 3 0.07
34 12 0.29
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.52
Consensus pattern (30 bp):
ATATAATATATAGTTTAATTTTTTTTAAAA
Found at i:8151252 original size:10 final size:10
Alignment explanation
Indices: 8151227--8151259 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
8151217 TATTATTTTT
8151227 ATTTT-ATTC
1 ATTTTAATTC
8151236 A-TTTAATTC
1 ATTTTAATTC
8151245 ATTTTAATTC
1 ATTTTAATTC
8151255 ATTTT
1 ATTTT
8151260 GTTTTTTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.14
9 6 0.27
10 13 0.59
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTAATTC
Found at i:8152474 original size:19 final size:18
Alignment explanation
Indices: 8152431--8152475 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8152421 ATTATTTTTA
*
8152431 TTTTATTTCTCATTATTT
1 TTTTATTTCTCATAATTT
**
8152449 TACTATTTCTACATAATTT
1 TTTTATTTCT-CATAATTT
8152468 TTTTATTT
1 TTTTATTT
8152476 TTATTAATCT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTTCTCATAATTT
Found at i:8152524 original size:2 final size:2
Alignment explanation
Indices: 8152517--8152559 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8152507 ATTGCTATTT
8152517 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8152559 T
1 T
8152560 TTTTATCTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8152596 original size:13 final size:13
Alignment explanation
Indices: 8152578--8152602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8152568 TCTAACTTAC
8152578 TTTTTTTATTTTA
1 TTTTTTTATTTTA
8152591 TTTTTTTATTTT
1 TTTTTTTATTTT
8152603 TTCCTGTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTATTTTA
Found at i:8152677 original size:16 final size:16
Alignment explanation
Indices: 8152644--8152673 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8152634 ATCTTTTTTT
8152644 ATTTATTATTTTTCTC
1 ATTTATTATTTTTCTC
8152660 ATTTATT-TTTTTCT
1 ATTTATTATTTTTCT
8152674 TCATCTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (16 bp):
ATTTATTATTTTTCTC
Found at i:8156689 original size:27 final size:27
Alignment explanation
Indices: 8156647--8156722 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
8156637 CCAGAAGGCG
* *
8156647 CGCTGACTATATCTTCTAGAAAACTAC
1 CGCTGACTAGACCTTCTAGAAAACTAC
*
8156674 CGCTGACTAGACCTTCTAGAAAACTGC
1 CGCTGACTAGACCTTCTAGAAAACTAC
8156701 CGCTGACTAGACCTTCTAGAAA
1 CGCTGACTAGACCTTCTAGAAA
8156723 CTGCCACATC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCTGACTAGACCTTCTAGAAAACTAC
Done.