Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 42 of 78
Found at i:8313276 original size:3 final size:3
Alignment explanation
Indices: 8313270--8313301 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8313260 GTTTTTTTAA
8313270 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8313302 CATTTCAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8314391 original size:3 final size:3
Alignment explanation
Indices: 8314383--8314412 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8314373 AATATATTTC
*
8314383 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8314413 TAGTCATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:8321436 original size:12 final size:12
Alignment explanation
Indices: 8321419--8321447 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8321409 TTAGCATCTT
8321419 TGAAAATAAAAA
1 TGAAAATAAAAA
8321431 TGAAAATAAAAA
1 TGAAAATAAAAA
8321443 T-AAAA
1 TGAAAA
8321448 CAAAGAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (12 bp):
TGAAAATAAAAA
Found at i:8326780 original size:73 final size:73
Alignment explanation
Indices: 8326661--8326812 Score: 241
Period size: 73 Copynumber: 2.1 Consensus size: 73
8326651 GAGAAGTTTT
*
8326661 AGAATCGCACTAAAGCTCATTTGCAAGAGTTAGAAAAACAAGTAAGTCAACTTGCTCAAACCATG
1 AGAATCGCACTAAAGCTCATTTGCAAGAGTTAGAAAAACAAGTAAGTCAACTTGCTCAAACAATG
8326726 AGACGATG
66 AGACGATG
* * * *
8326734 AGAATCGCACTGAAGTTCATTTGCAAGAGTTAGATAAACAAGTAAGTCAATTTGCTCAAACAATG
1 AGAATCGCACTAAAGCTCATTTGCAAGAGTTAGAAAAACAAGTAAGTCAACTTGCTCAAACAATG
*
8326799 GGACGATG
66 AGACGATG
*
8326807 GGAATC
1 AGAATC
8326813 ACAAAGAAGG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.22
Consensus pattern (73 bp):
AGAATCGCACTAAAGCTCATTTGCAAGAGTTAGAAAAACAAGTAAGTCAACTTGCTCAAACAATG
AGACGATG
Found at i:8330293 original size:20 final size:20
Alignment explanation
Indices: 8330256--8330294 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8330246 CTAGATAAGT
* * *
8330256 AGTATCGATATTGTTCTTAC
1 AGTATAGATACTGCTCTTAC
8330276 AGTATAGATACTGCTCTTA
1 AGTATAGATACTGCTCTTA
8330295 TGGTACCGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (20 bp):
AGTATAGATACTGCTCTTAC
Found at i:8330433 original size:20 final size:21
Alignment explanation
Indices: 8330408--8330447 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
8330398 CTCTGTATAG
8330408 TAGTATAGATACCAT-AGGCA
1 TAGTATAGATACCATCAGGCA
*
8330428 TAGTATCGATACCATCAGGC
1 TAGTATAGATACCATCAGGC
8330448 CCCAATGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (21 bp):
TAGTATAGATACCATCAGGCA
Found at i:8331720 original size:19 final size:20
Alignment explanation
Indices: 8331696--8331743 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8331686 AATGATTTTC
* * *
8331696 TTTTGAAAGCTAAAATG-GA
1 TTTTGAAAACCAAAATGTAA
8331715 TTTTGAAAACCAAAATGTAA
1 TTTTGAAAACCAAAATGTAA
8331735 TTTTGAAAA
1 TTTTGAAAA
8331744 ATGATTTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (20 bp):
TTTTGAAAACCAAAATGTAA
Found at i:8333147 original size:148 final size:149
Alignment explanation
Indices: 8332879--8333156 Score: 461
Period size: 148 Copynumber: 1.9 Consensus size: 149
8332869 GTAAGTGGAA
* * * *
8332879 TTTTGCCAAAACTAATTTTTTAAATGTTTTGTTATATCAAAAAAATGGAGATTGTTGAACTATAT
1 TTTTGCCAAAACTAATTTTTCAAAAGTTTTGTTATATCAAAAAAAGGGAGATTGTTAAACTATAT
*
8332944 TTTGATATAACAATTAAGGCAAAATGTTTTTGGACTTGAATTGAATTTATTCAAAGC-TTTCAAA
66 TTTGATATAACAATTAAGGCAAAATGTTTTTGGACTTAAATTGAATTTATTCAAAGCTTTTCAAA
8333008 GTTTTTCAAAAGTAAGGGG
131 GTTTTTCAAAAGTAAGGGG
**
8333027 TTTTGCCAAAAAC-AATTTTTCAAAAGTTTTGTTATATCAAAAAGGGGGAGATTGTTAAACTATA
1 TTTTGCC-AAAACTAATTTTTCAAAAGTTTTGTTATATCAAAAAAAGGGAGATTGTTAAACTATA
*
8333091 TTTTGATATAACAATTAATGCAAAATGTTTTTGGACTTAAATTGAATTTATTCAAAGCTTTTCAA
65 TTTTGATATAACAATTAAGGCAAAATGTTTTTGGACTTAAATTGAATTTATTCAAAGCTTTTCAA
8333156 A
130 A
8333157 AATAATTCAA
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
148 108 0.90
149 12 0.10
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (149 bp):
TTTTGCCAAAACTAATTTTTCAAAAGTTTTGTTATATCAAAAAAAGGGAGATTGTTAAACTATAT
TTTGATATAACAATTAAGGCAAAATGTTTTTGGACTTAAATTGAATTTATTCAAAGCTTTTCAAA
GTTTTTCAAAAGTAAGGGG
Found at i:8336283 original size:21 final size:20
Alignment explanation
Indices: 8336250--8336289 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
8336240 GTAAGTTGAT
8336250 ATTTTTTTATTATTTTTCTG
1 ATTTTTTTATTATTTTTCTG
*
8336270 ATTTTTATTCTTATTTTTCT
1 ATTTTT-TTATTATTTTTCT
8336290 TCTATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (20 bp):
ATTTTTTTATTATTTTTCTG
Found at i:8336715 original size:3 final size:3
Alignment explanation
Indices: 8336677--8336706 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8336667 AAATAAAGAT
8336677 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8336707 GTTAATAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8337243 original size:119 final size:119
Alignment explanation
Indices: 8337032--8337257 Score: 299
Period size: 119 Copynumber: 1.9 Consensus size: 119
8337022 ACTCCTTTGC
* * * * * *
8337032 GTTGAGGAGATCTAGTCGTTGGACGATAATATTCCCACGTTATGAGGACATCTAGCCCTCTTTAG
1 GTTGAGGAGATATAGTCGGTGGACGACAATATTCCCACATGATGAGGACATCTAGCCATCTTTAG
* * * ** *
8337097 GGATACTTTGTAGATAACATGGTTCCTACGTGATGAGGAAGTCTGGTCCTACTT
66 GGATAATTTGGAGACAACACAGTTCCTACGTGATGAGAAAGTCTGGTCCTACTT
* * * *
8337151 GTTGAGGAGATATAGTCGGTGGACGACATTGTTCCTACATGATGAGGACGTCTAGCCATCTTTAG
1 GTTGAGGAGATATAGTCGGTGGACGACAATATTCCCACATGATGAGGACATCTAGCCATCTTTAG
*
8337216 GGATAATTTGGAGACAACACATTTCCTACGTGATGAGAAAGT
66 GGATAATTTGGAGACAACACAGTTCCTACGTGATGAGAAAGT
8337258 TTGATTGTCT
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
119 90 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (119 bp):
GTTGAGGAGATATAGTCGGTGGACGACAATATTCCCACATGATGAGGACATCTAGCCATCTTTAG
GGATAATTTGGAGACAACACAGTTCCTACGTGATGAGAAAGTCTGGTCCTACTT
Found at i:8337414 original size:140 final size:139
Alignment explanation
Indices: 8337157--8337416 Score: 389
Period size: 140 Copynumber: 1.9 Consensus size: 139
8337147 ACTTGTTGAG
* *
8337157 GAGATATAGTCGGTGGACGACATTGTTCCTACATGATGAGGACGTCTAGCCATCTTTAGGGATAA
1 GAGATATAGTCGGTGGACGAAATTGTTCATACATGATGAGGACGTCTAGCCATCTTTAGGGATAA
* * * *
8337222 TTTGGAGACAACACATTTCCTACGTGATGAGAAAGTTTGATTGTCTGAGGATGACGTTGCTCCTA
66 TTTGGAGACAACAAAGTTCCTACGTGATGAGAAAGTCTGATTGTCCGAGGATGACGTTGCTCCTA
8337287 CGCGTTAAA
131 CGCGTTAAA
* * *
8337296 GAGATCTAGTCGGT-GAGCGAAATTGTTCATACGTGATGAGGACGTCTAGCCTTTCTTTAGGGAT
1 GAGATATAGTCGGTGGA-CGAAATTGTTCATACATGATGAGGACGTCTAGCC-ATCTTTAGGGAT
*
8337360 AATTTGGAGACAACAAAGTTCCTACGTGATGAGAAAGTCTGATTAG-CCGTGGATGAC
64 AATTTGGAGACAACAAAGTTCCTACGTGATGAGAAAGTCTGATT-GTCCGAGGATGAC
8337417 ACTGCTCATA
Statistics
Matches: 108, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
138 2 0.02
139 44 0.41
140 61 0.56
141 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (139 bp):
GAGATATAGTCGGTGGACGAAATTGTTCATACATGATGAGGACGTCTAGCCATCTTTAGGGATAA
TTTGGAGACAACAAAGTTCCTACGTGATGAGAAAGTCTGATTGTCCGAGGATGACGTTGCTCCTA
CGCGTTAAA
Found at i:8337708 original size:30 final size:30
Alignment explanation
Indices: 8337672--8337782 Score: 91
Period size: 30 Copynumber: 3.5 Consensus size: 30
8337662 GATGAAACTT
8337672 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
*** *
8337702 TGTTTCAAGAGAAATTGTCTCAAGTGAGAAAAAATTT-
1 TGTTTCAAGAGAAACAATCTCAA---AG-----GTTTA
*
8337739 TGTTTCAAGATAAACAATCTCAAA-GTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
8337768 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
8337783 TGTCTTAAGC
Statistics
Matches: 62, Mismatches: 10, Indels: 19
0.68 0.11 0.21
Matches are distributed among these distances:
28 3 0.05
29 14 0.23
30 20 0.32
33 2 0.03
34 1 0.02
37 19 0.31
38 3 0.05
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTTA
Found at i:8337802 original size:66 final size:66
Alignment explanation
Indices: 8337567--8337825 Score: 288
Period size: 66 Copynumber: 3.9 Consensus size: 66
8337557 TGGAAAGAAA
* * * * * * * *
8337567 TATGTTACAAGAGAAGTTATCTCAAGTGAGATAAAATTTTGTTTCTAGTGAAAC-ATTTCAAAAT
1 TATGTTTCAAGAGAAATTGTCTCAAGCGAGATAAAATTTTGTTTCAAGAGAAACAATCTCAAAGT
8337631 T
66 T
* * * * * *
8337632 TGTATTTCAAGGGAAAATTGTCTCAAGCAAGATGAAACTTTGTTTCAAGAGAAACAATCTCAAAG
1 TATGTTTCAAGAG-AAATTGTCTCAAGCGAGATAAAATTTTGTTTCAAGAGAAACAATCTCAAA-
8337697 GTT
64 GTT
* * *
8337700 TATGTTTCAAGAGAAATTGTCTCAAGTGAGAAAAAATTTTGTTTCAAGATAAACAATCTCAAAGT
1 TATGTTTCAAGAGAAATTGTCTCAAGCGAGATAAAATTTTGTTTCAAGAGAAACAATCTCAAAGT
8337765 T
66 T
* * * * *
8337766 TATGTTTCAAGAGAAACTGTCTTAAGCGAGACAAAA-TTTGTTTCGAGAGAAATAATCTCA
1 TATGTTTCAAGAGAAATTGTCTCAAGCGAGATAAAATTTTGTTTCAAGAGAAACAATCTCA
8337826 GATGTTATCA
Statistics
Matches: 161, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
65 30 0.19
66 68 0.42
67 51 0.32
68 12 0.07
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (66 bp):
TATGTTTCAAGAGAAATTGTCTCAAGCGAGATAAAATTTTGTTTCAAGAGAAACAATCTCAAAGT
T
Found at i:8337825 original size:102 final size:100
Alignment explanation
Indices: 8337702--8338009 Score: 311
Period size: 99 Copynumber: 3.0 Consensus size: 100
8337692 CAAAGGTTTA
** * *
8337702 TGTTTCAAGAGAAATTGTCTCAAGTGAGAAAAAATTTTGTTTCAAG-ATAAACAATCTCAAAGTT
1 TGTTTC-AGAGAAATAATCTCAAGTGAG-ATAAATTTTGTTTCAAGTA-AAACAATTTCAAA-TT
* *
8337766 TATGTTTC-AAGAGAAACTGTCTTAAGCGAGACAAAATT
62 TATGTTTCAAAGAGAAACTGTCTCAAGTGAGACAAAATT
** *
8337804 TGTTTCGAGAGAAATAATCTC-AGATGTTATCAATTTTGTTTCAAGTAAAACAATTTCAGAATTT
1 TGTTTC-AGAGAAATAATCTCAAG-TGAGATAAATTTTGTTTCAAGTAAAACAATTTCA-AATTT
* * *
8337868 GTGTTTCAAACAGAAACTGTCTCAAGTGAGACGAAATT
63 ATGTTTCAAAGAGAAACTGTCTCAAGTGAGACAAAATT
* * * * *
8337906 TATTT-TGAG-AACAATCTCAAGTTAGATAAATTTTGTTTCAAGTGAAACAATTTCAAAATTTAT
1 TGTTTCAGAGAAATAATCTCAAGTGAGATAAATTTTGTTTCAAGTAAAACAATTTC-AAATTTAT
* * * * *
8337969 ATTTCTAGGGGAAATTGTCTCAAGTGAGACAAAATT
65 GTTTCAAAGAGAAACTGTCTCAAGTGAGACAAAATT
8338005 TGTTT
1 TGTTT
8338010 TTAAGAAAAA
Statistics
Matches: 170, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
99 75 0.44
100 6 0.04
101 36 0.21
102 53 0.31
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (100 bp):
TGTTTCAGAGAAATAATCTCAAGTGAGATAAATTTTGTTTCAAGTAAAACAATTTCAAATTTATG
TTTCAAAGAGAAACTGTCTCAAGTGAGACAAAATT
Found at i:8338094 original size:37 final size:36
Alignment explanation
Indices: 8338053--8338186 Score: 99
Period size: 36 Copynumber: 3.7 Consensus size: 36
8338043 AGGAAGACTT
*
8338053 TCTCAAGTGAGAGGAAATTTGTTTTTAAGTAAAACTA
1 TCTCAAGCGAGAGGAAATTTGTTTTTAAG-AAAACTA
** * ** *
8338090 TCTCAAGCGAGACAAAATTTATTTTTAAGAGGACAA
1 TCTCAAGCGAGAGGAAATTTGTTTTTAAGAAAACTA
* ** * * *
8338126 TCTCAAGTGAGATCAATTTTG-TTTCAAGAAAAACTG
1 TCTCAAGCGAGAGGAAATTTGTTTTTAAG-AAAACTA
* *
8338162 TATCTAGCGAGAGGAAACTTTGTTT
1 TCTCAAGCGAGAGGAAA-TTTGTTT
8338187 CGAGAGAAAA
Statistics
Matches: 71, Mismatches: 23, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
35 6 0.08
36 34 0.48
37 29 0.41
38 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (36 bp):
TCTCAAGCGAGAGGAAATTTGTTTTTAAGAAAACTA
Found at i:8338735 original size:16 final size:16
Alignment explanation
Indices: 8338714--8338745 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8338704 TTCAAAGATG
8338714 CAATTTCATGTAACAT
1 CAATTTCATGTAACAT
*
8338730 CAATTTCATTTAACAT
1 CAATTTCATGTAACAT
8338746 GTATGTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (16 bp):
CAATTTCATGTAACAT
Found at i:8340850 original size:16 final size:16
Alignment explanation
Indices: 8340829--8340889 Score: 65
Period size: 16 Copynumber: 3.8 Consensus size: 16
8340819 TTGCTTATTG
8340829 TTTTTTTT-TTTGCTCT
1 TTTTTTTTCTTTG-TCT
8340845 TTTTTTTTCTTT-TCT
1 TTTTTTTTCTTTGTCT
8340860 TTTTTATTTCTTTGAT-T
1 TTTTT-TTTCTTTG-TCT
*
8340877 TTTTTTTGCTTTG
1 TTTTTTTTCTTTG
8340890 ATTTGATCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
15 8 0.20
16 22 0.55
17 9 0.22
18 1 0.03
ACGTcount: A:0.03, C:0.10, G:0.07, T:0.80
Consensus pattern (16 bp):
TTTTTTTTCTTTGTCT
Found at i:8340860 original size:15 final size:15
Alignment explanation
Indices: 8340768--8340888 Score: 66
Period size: 15 Copynumber: 7.5 Consensus size: 15
8340758 ACTTGATATG
8340768 TTTTC-TTTCTTCTTT
1 TTTTCTTTTCTT-TTT
* *
8340783 TTTCCTTTTGTTTTT
1 TTTTCTTTTCTTTTT
*
8340798 TTCTCTTTACTTCTTTTCT
1 TTTTC-TT--TTCTTTT-T
* *
8340817 CTTTGCTTATTGTTTTT
1 -TTTTCTT-TTCTTTTT
*
8340834 TTTT-TTGCTCTTTTT
1 TTTTCTT-TTCTTTTT
8340849 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
**
8340864 TATTTCTTTGATTTTT
1 T-TTTCTTTTCTTTTT
8340880 TTTTGCTTT
1 TTTT-CTTT
8340889 GATTTGATCT
Statistics
Matches: 81, Mismatches: 16, Indels: 17
0.71 0.14 0.15
Matches are distributed among these distances:
15 33 0.41
16 29 0.36
17 1 0.01
18 12 0.15
19 3 0.04
20 3 0.04
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (15 bp):
TTTTCTTTTCTTTTT
Found at i:8352495 original size:20 final size:20
Alignment explanation
Indices: 8352472--8352534 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
8352462 GAGAAAAGGT
*
8352472 AAAAGTTAA-AATGAAAGAG
1 AAAAATTAATAATGAAAGAG
*
8352491 AAAAATTAATTATGAAAGAG
1 AAAAATTAATAATGAAAGAG
*
8352511 AAAAATTAATAATGAAAGAT
1 AAAAATTAATAATGAAAGAG
8352531 AAAA
1 AAAA
8352535 GAAAAAGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 8 0.21
20 31 0.79
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.21
Consensus pattern (20 bp):
AAAAATTAATAATGAAAGAG
Found at i:8360931 original size:68 final size:65
Alignment explanation
Indices: 8360788--8360979 Score: 282
Period size: 68 Copynumber: 2.9 Consensus size: 65
8360778 TTGTAACAAA
* * *
8360788 ATCTAAAGTTTAACATTCATTAGGTAACTTTTGAAA--AT-ATCTAAAAAATTATTTTAAATTAT
1 ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATATAAAAAATTATTTTAAATTAT
8360850 ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATATGAAAAATATTATTTTTAAAT
1 ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATAT-AAAAA-ATTA-TTTTAAAT
8360915 TAT
63 TAT
*
8360918 ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATATTTAAAAAAATATTTTAA
1 ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATA--TAAAAAATTATTTTAA
8360980 CATAATTTAA
Statistics
Matches: 118, Mismatches: 4, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
62 35 0.30
64 1 0.01
65 3 0.03
66 5 0.04
67 10 0.08
68 58 0.49
69 5 0.04
70 1 0.01
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.44
Consensus pattern (65 bp):
ATCTAAAGTTTAACATTCATTATGTAACTTTTGAAAGTTTAATATAAAAAATTATTTTAAATTAT
Found at i:8364320 original size:15 final size:15
Alignment explanation
Indices: 8364302--8364562 Score: 237
Period size: 13 Copynumber: 19.2 Consensus size: 15
8364292 AAAAATTATC
8364302 TTATTATTATTATTA
1 TTATTATTATTATTA
8364317 TTATTATTATTATTA
1 TTATTATTATTATTA
8364332 TTATTATTATTATTA
1 TTATTATTATTATTA
8364347 TTA-TATTATTA-TA
1 TTATTATTATTATTA
8364360 TATATTA-TATTA-TA
1 T-TATTATTATTATTA
8364374 TTA-TATTA-TATTA
1 TTATTATTATTATTA
8364387 -TATTA-TATTA-TA
1 TTATTATTATTATTA
8364399 TTA-TATTA-TATTA
1 TTATTATTATTATTA
8364412 -TATTA-TATTA-TA
1 TTATTATTATTATTA
8364424 TTA-TATTA-TATTA
1 TTATTATTATTATTA
8364437 -TATTA-TATTA-TA
1 TTATTATTATTATTA
8364449 TTA-TATTA-TATATA
1 TTATTATTATTAT-TA
8364463 TTA-TATTA-TATTA
1 TTATTATTATTATTA
8364476 -TATTA-TATATATATA
1 TTATTATTAT-TAT-TA
8364491 TATATTA-TATTA-TA
1 T-TATTATTATTATTA
8364505 TTA-TATTA-TATTA
1 TTATTATTATTATTA
8364518 -TATTA-TATT-TATA
1 TTATTATTATTAT-TA
8364531 TTA-TATTATTATTA
1 TTATTATTATTATTA
8364545 TTATTATTATTATTA
1 TTATTATTATTATTA
8364560 TTA
1 TTA
8364563 AATTACATTT
Statistics
Matches: 211, Mismatches: 0, Indels: 70
0.75 0.00 0.25
Matches are distributed among these distances:
12 47 0.22
13 54 0.26
14 48 0.23
15 52 0.25
16 2 0.01
17 8 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTATTATTATTA
Found at i:8364355 original size:5 final size:5
Alignment explanation
Indices: 8364303--8364567 Score: 370
Period size: 5 Copynumber: 50.0 Consensus size: 5
8364293 AAAATTATCT
8364303 TATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA TATTA
1 TATTA -TATTA -TATTA -TATTA -TATTA -TATTA -TATTA -TATTA TATTA
8364355 TTATATA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 -TAT-TA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8364407 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8364457 TA-TA TATTA TATTA TATTA TATTA TATATA TATATA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TAT-TA TAT-TA TATTA TATTA TATTA
8364508 TATTA TATTA TATTA TATTTA TATTA TATTA TTATTA TTATTA TTATTA
1 TATTA TATTA TATTA TA-TTA TATTA TATTA -TATTA -TATTA -TATTA
*
8364557 TTATTA AATTA
1 -TATTA TATTA
8364568 CATTTTACAT
Statistics
Matches: 252, Mismatches: 1, Indels: 13
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.02
5 160 0.63
6 86 0.34
7 2 0.01
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:8365482 original size:2 final size:2
Alignment explanation
Indices: 8365477--8365504 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8365467 AGAGAACTCA
8365477 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8365505 AAAAAAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8366120 original size:30 final size:29
Alignment explanation
Indices: 8366029--8366131 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 29
8366019 ATATTTATGA
* *
8366029 TTTAGTCCTTTAAGTTTCTATTTTTGCTAT
1 TTTAGTCCTTTAAGTTTCTGTTTTT-TTAT
*
8366059 TTTAGTCCTTTAAGTTTTTGTTTTTTCTAT
1 TTTAGTCCTTTAAGTTTCTGTTTTTT-TAT
8366089 TTTAGTCCTTTAAGTTTCTGTTATTTTTAT
1 TTTAGTCCTTTAAGTTTCTGTT-TTTTTAT
* *
8366119 TTTGGTCTTTTAA
1 TTTAGTCCTTTAA
8366132 ATCATTGATT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
30 61 0.94
31 4 0.06
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.63
Consensus pattern (29 bp):
TTTAGTCCTTTAAGTTTCTGTTTTTTTAT
Found at i:8371622 original size:16 final size:15
Alignment explanation
Indices: 8371601--8371635 Score: 61
Period size: 16 Copynumber: 2.3 Consensus size: 15
8371591 TCACAGATCA
8371601 ACATACATACATCAAC
1 ACATACATACAT-AAC
8371617 ACATACATACATAAC
1 ACATACATACATAAC
8371632 ACAT
1 ACAT
8371636 GAAAGTTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (15 bp):
ACATACATACATAAC
Found at i:8372003 original size:36 final size:36
Alignment explanation
Indices: 8371949--8372036 Score: 99
Period size: 36 Copynumber: 2.3 Consensus size: 36
8371939 TCTTCTTGAA
*
8371949 AAAACAAAGTGTCGTCTCCCTAT-AGACAATTTTT-CTC
1 AAAACAAA-TTTCGTCTCCCT-TGAGAC-ATTTTTCCTC
8371986 AAAACAAATTTCGTCTCCCTTGAGACATTTTTCCCTC
1 AAAACAAATTTCGTCTCCCTTGAGACATTTTT-CCTC
8372023 AGAATACAAATTTC
1 A-AA-ACAAATTTC
8372037 AATGTTGTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
35 7 0.16
36 15 0.33
37 12 0.27
38 2 0.04
39 9 0.20
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33
Consensus pattern (36 bp):
AAAACAAATTTCGTCTCCCTTGAGACATTTTTCCTC
Found at i:8372078 original size:21 final size:21
Alignment explanation
Indices: 8372048--8372095 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
8372038 ATGTTGTTTT
8372048 ACTTGAAACAAAGTTAATCTC
1 ACTTGAAACAAAGTTAATCTC
*
8372069 ACTTGCAACAAAGTTAATCTC
1 ACTTGAAACAAAGTTAATCTC
8372090 ACTTGA
1 ACTTGA
8372096 GATTTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (21 bp):
ACTTGAAACAAAGTTAATCTC
Found at i:8372418 original size:29 final size:29
Alignment explanation
Indices: 8372379--8372451 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
8372369 CTTTGAGCAT
8372379 GTTTCTCTTGAAACACTTATCTTTGAGTC
1 GTTTCTCTTGAAACACTTATCTTTGAGTC
* *
8372408 GTTTCTATTGAAACACTTATCTTTGAGTT
1 GTTTCTCTTGAAACACTTATCTTTGAGTC
*
8372437 ATTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
8372452 AAGTTTTATC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.45
Consensus pattern (29 bp):
GTTTCTCTTGAAACACTTATCTTTGAGTC
Found at i:8372517 original size:18 final size:18
Alignment explanation
Indices: 8372491--8372526 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8372481 TGGAAAAATC
*
8372491 ATCTTTGAACTTCGATAA
1 ATCTATGAACTTCGATAA
8372509 ATCTATGAACTTCGATAA
1 ATCTATGAACTTCGATAA
8372527 TTTTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (18 bp):
ATCTATGAACTTCGATAA
Found at i:8380392 original size:2 final size:2
Alignment explanation
Indices: 8380387--8380429 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
8380377 TATATATATA
* * *
8380387 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TA TG TG TA TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8380429 T
1 T
8380430 ATGTATGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.07, C:0.00, G:0.42, T:0.51
Consensus pattern (2 bp):
TG
Found at i:8380434 original size:4 final size:4
Alignment explanation
Indices: 8380427--8380483 Score: 87
Period size: 4 Copynumber: 14.2 Consensus size: 4
8380417 TATGTGTATG
* * *
8380427 TGTA TGTA TGTA TGTA CGTA TGTA CGTA TGTA TGTA TATA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
8380475 TGTA TGTA T
1 TGTA TGTA T
8380484 TTGATTTGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:8383033 original size:20 final size:20
Alignment explanation
Indices: 8383008--8383078 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
8382998 ACAGAAAGGG
* *
8383008 GGTATCGATATTGTGATGAA
1 GGTATCGATACTGTGAGGAA
8383028 GGTATCGATACTGTGAGGAA
1 GGTATCGATACTGTGAGGAA
*
8383048 GGTATCGATACTATGAGGAA
1 GGTATCGATACTGTGAGGAA
*
8383068 GCTATCGATAC
1 GGTATCGATAC
8383079 CATTGATAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (20 bp):
GGTATCGATACTGTGAGGAA
Found at i:8383395 original size:108 final size:108
Alignment explanation
Indices: 8383206--8383758 Score: 865
Period size: 108 Copynumber: 5.1 Consensus size: 108
8383196 ATTCCAAATA
* *
8383206 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGCTGATGAATAACCATTTCGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
8383271 TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
66 TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * *
8383314 GGCACTAAGTGTGCAAAGT-ACGAAATTCATCATAGGTTGATGAATAATCGTTTAGACACTAAGT
1 GGCACTAAGTGTGC-AATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGT
* *
8383378 GTGCAAAGTACGAAATTCATCATAGGTTGATGAATAACCATTTC
65 GTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
8383422 GGCATTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACTGTTTCGTCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* *
8383487 TGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTT
66 TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
* *
8383530 GTCACTAAGTGTACAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
* * *
8383595 TGCAAAGTATGGAATTCATCATATGTTGATGAATAACCATTTC
66 TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * *
8383638 GGCACTAAGTGTGCAATTCACAGAATTCATCATATGTTGATGAATAATCGTTTCGGCACTAAGTT
1 GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
*
8383703 TGCAAAGTACAAAATTCATCATATGTTGATGAATAACCGTTTC
66 TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
8383746 GGCACTATGTGTG
1 GGCACTAAGTGTG
8383759 TAACCCACAG
Statistics
Matches: 403, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
107 3 0.01
108 397 0.99
109 3 0.01
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (108 bp):
GGCACTAAGTGTGCAATTCACGGAATTCATCATATGTTGATGAATAACCGTTTCGGCACTAAGTG
TGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:8383790 original size:54 final size:54
Alignment explanation
Indices: 8383206--8383758 Score: 781
Period size: 54 Copynumber: 10.2 Consensus size: 54
8383196 ATTCCAAATA
* * *
8383206 GGCACTAAGTGTGC-AATTCACGGAATTCATCATATGCTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAAAGT-ACGGAATTCATCATATGTTGATGAATAACCGTTTC
*
8383260 GGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
8383314 GGCACTAAGTGTGCAAAGTACGAAATTCATCATAGGTTGATGAATAATCGTTTA
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
8383368 GACACTAAGTGTGCAAAGTACGAAATTCATCATAGGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * *
8383422 GGCATTAAGTGTGC-AATTCACGGAATTCATCATATGTTGATGAATAACTGTTTC
1 GGCACTAAGTGTGCAAAGT-ACGGAATTCATCATATGTTGATGAATAACCGTTTC
* *
8383476 GTCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTT
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * *
8383530 GTCACTAAGTGTAC-AATTCACGGAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAAAGT-ACGGAATTCATCATATGTTGATGAATAACCGTTTC
* *
8383584 GGCACTAAGTGTGCAAAGTATGGAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
* * *
8383638 GGCACTAAGTGTGC-AATTCACAGAATTCATCATATGTTGATGAATAATCGTTTC
1 GGCACTAAGTGTGCAAAGT-ACGGAATTCATCATATGTTGATGAATAACCGTTTC
* **
8383692 GGCACTAAGTTTGCAAAGTACAAAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
*
8383746 GGCACTATGTGTG
1 GGCACTAAGTGTG
8383759 TAACCCACAG
Statistics
Matches: 450, Mismatches: 42, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
53 9 0.02
54 429 0.95
55 12 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (54 bp):
GGCACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:8388260 original size:64 final size:63
Alignment explanation
Indices: 8388129--8388247 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 63
8388119 ATAATATGCA
* * *
8388129 ATATATGTACTATTTAATGAAAACTATATACTATATACTAAACCATATACTATGTGCTATATG
1 ATATATGTACCATTTAATGAAAACTATATACTATACACTAAACCATATACTATATGCTATATG
* *
8388192 ATATATGT-CCATTTAACATGAAAACTATATACTATACAC-ACACTATATACTATATG
1 ATATATGTACCATTT-A-ATGAAAACTATATACTATACACTAAACCATATACTATATG
8388248 ATTATAATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
62 5 0.10
63 23 0.47
64 21 0.43
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (63 bp):
ATATATGTACCATTTAATGAAAACTATATACTATACACTAAACCATATACTATATGCTATATG
Found at i:8388267 original size:31 final size:31
Alignment explanation
Indices: 8388219--8388278 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
8388209 ATGAAAACTA
* *
8388219 TATACTATACACACACTATATACTATATGAT
1 TATAATATACACACACTATATAATATATGAT
*
8388250 TATAATATATACACACTATATAATATATG
1 TATAATATACACACACTATATAATATATG
8388279 CTCAAACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (31 bp):
TATAATATACACACACTATATAATATATGAT
Found at i:8405622 original size:21 final size:22
Alignment explanation
Indices: 8405556--8405616 Score: 99
Period size: 21 Copynumber: 2.9 Consensus size: 22
8405546 TTACGGAGGC
8405556 TGTAGGATTTTCAGCAA-TGGT
1 TGTAGGATTTTCAGCAAGTGGT
*
8405577 TATAGGATTTTCAGC-AGTGGT
1 TGTAGGATTTTCAGCAAGTGGT
8405598 TGTAGGATTTTCAGCAAGT
1 TGTAGGATTTTCAGCAAGT
8405617 TTTGTAATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 1 0.03
21 32 0.89
22 3 0.08
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.38
Consensus pattern (22 bp):
TGTAGGATTTTCAGCAAGTGGT
Found at i:8409897 original size:41 final size:41
Alignment explanation
Indices: 8409847--8409948 Score: 168
Period size: 41 Copynumber: 2.5 Consensus size: 41
8409837 TAGATATTGG
8409847 TTCATGTAGTATCGGTATTGTTCATAGAATATTGATACTCCC
1 TTCA-GTAGTATCGGTATTGTTCATAGAATATTGATACTCCC
* *
8409889 TTTAGTAGTATCGGTATTGTTCATAGAATATTGATTCTCCC
1 TTCAGTAGTATCGGTATTGTTCATAGAATATTGATACTCCC
*
8409930 TTCAGTAGTATCGATATTG
1 TTCAGTAGTATCGGTATTG
8409949 ATCAATTTGA
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
41 53 0.95
42 3 0.05
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (41 bp):
TTCAGTAGTATCGGTATTGTTCATAGAATATTGATACTCCC
Found at i:8413790 original size:26 final size:26
Alignment explanation
Indices: 8413754--8413865 Score: 206
Period size: 26 Copynumber: 4.3 Consensus size: 26
8413744 AAAGCATATT
8413754 GAAGTTTATAGACATTTCATCAAGGA
1 GAAGTTTATAGACATTTCATCAAGGA
8413780 GAAGTTTATAGACATTTCATCAAGGA
1 GAAGTTTATAGACATTTCATCAAGGA
*
8413806 AAAGTTTATAGACATTTCATCAAGGA
1 GAAGTTTATAGACATTTCATCAAGGA
*
8413832 AAAGTTTATAGACATTTCATCAAGGA
1 GAAGTTTATAGACATTTCATCAAGGA
8413858 GAAGTTTA
1 GAAGTTTA
8413866 CATACTCACG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 84 1.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (26 bp):
GAAGTTTATAGACATTTCATCAAGGA
Found at i:8414745 original size:14 final size:14
Alignment explanation
Indices: 8414704--8414745 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
8414694 GGTAAATTTG
8414704 TAGATAAACTATAA
1 TAGATAAACTATAA
8414718 TAGA-AAA-TAT-A
1 TAGATAAACTATAA
*
8414729 TAGATAAACAATAA
1 TAGATAAACTATAA
8414743 TAG
1 TAG
8414746 GGGTGTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
11 5 0.21
12 6 0.25
13 5 0.21
14 8 0.33
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.26
Consensus pattern (14 bp):
TAGATAAACTATAA
Found at i:8425763 original size:2 final size:2
Alignment explanation
Indices: 8425756--8425794 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8425746 TATTCTAATC
8425756 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8425795 ATTAAAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8427572 original size:80 final size:80
Alignment explanation
Indices: 8427468--8427629 Score: 315
Period size: 80 Copynumber: 2.0 Consensus size: 80
8427458 AATAAGGCAT
8427468 TTGATGAAGTTCATGATGATCACTTTTCAAACCTATTATGGAATGAGGATGAGTTGCATTAGACC
1 TTGATGAAGTTCATGATGATCACTTTTCAAACCTATTATGGAATGAGGATGAGTTGCATTAGACC
8427533 AAGTTTTAGCACATG
66 AAGTTTTAGCACATG
*
8427548 TTGATGAAGTTCGTGATGATCACTTTTCAAACCTATTATGGAATGAGGATGAGTTGCATTAGACC
1 TTGATGAAGTTCATGATGATCACTTTTCAAACCTATTATGGAATGAGGATGAGTTGCATTAGACC
8427613 AAGTTTTAGCACATG
66 AAGTTTTAGCACATG
8427628 TT
1 TT
8427630 CCACCTTGAT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (80 bp):
TTGATGAAGTTCATGATGATCACTTTTCAAACCTATTATGGAATGAGGATGAGTTGCATTAGACC
AAGTTTTAGCACATG
Found at i:8431352 original size:20 final size:20
Alignment explanation
Indices: 8431290--8431357 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
8431280 GGCCAACAAA
*
8431290 TTCGCAACGCGAA-TTCCAAT
1 TTCGCAAC-CCAATTTCCAAT
* * *
8431310 TACGCAACCCAGTTTCCATT
1 TTCGCAACCCAATTTCCAAT
8431330 TTCGCAACCCAATTTCCAAT
1 TTCGCAACCCAATTTCCAAT
*
8431350 TTCACAAC
1 TTCGCAAC
8431358 GCGAATATGT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 2 0.05
20 37 0.95
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (20 bp):
TTCGCAACCCAATTTCCAAT
Found at i:8431426 original size:20 final size:20
Alignment explanation
Indices: 8431401--8431440 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8431391 TACGCAAAAA
*
8431401 TCGCAACGCGATAGTCAAAT
1 TCGCAACGCGAAAGTCAAAT
8431421 TCGCAACGCGAAAGTCAAAT
1 TCGCAACGCGAAAGTCAAAT
8431441 GTTTTTACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (20 bp):
TCGCAACGCGAAAGTCAAAT
Found at i:8431597 original size:22 final size:22
Alignment explanation
Indices: 8431571--8431613 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8431561 CGGCGACATC
* *
8431571 CGTCCGCATCTCTGACGAAATT
1 CGTCCCCATCTCCGACGAAATT
*
8431593 CGTCCCCATTTCCGACGAAAT
1 CGTCCCCATCTCCGACGAAAT
8431614 CCATCTATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (22 bp):
CGTCCCCATCTCCGACGAAATT
Found at i:8431949 original size:20 final size:20
Alignment explanation
Indices: 8431908--8431949 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8431898 GAAACTAAAA
* * *
8431908 TCGCGTTGCGATTTTCATTT
1 TCGCGTTGCGAATTTAAGTT
8431928 TCGCGTTGCGAATTTAAGTT
1 TCGCGTTGCGAATTTAAGTT
8431948 TC
1 TC
8431950 AGAAACTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.45
Consensus pattern (20 bp):
TCGCGTTGCGAATTTAAGTT
Found at i:8432347 original size:14 final size:14
Alignment explanation
Indices: 8432328--8432367 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8432318 TTTTGATTAA
8432328 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
** *
8432342 TTGATTTGTTTAAT
1 TTGATTTGTAAAAG
8432356 TTGATTTGTAAA
1 TTGATTTGTAAA
8432368 TAAGAATTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:8432772 original size:39 final size:39
Alignment explanation
Indices: 8432718--8432804 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
8432708 TCAAGTTGTA
8432718 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
* *
8432757 GATTTTGATTTCCTTTTGCTTGGTACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
8432796 GATTTTGAT
1 GATTTTGAT
8432805 GAGCATCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTG
Found at i:8433139 original size:18 final size:18
Alignment explanation
Indices: 8433116--8433152 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8433106 CGAAATTTAT
8433116 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
8433134 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
8433152 A
1 A
8433153 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:8433773 original size:19 final size:19
Alignment explanation
Indices: 8433745--8433797 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
8433735 AAACATTTGT
8433745 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
*
8433764 GTTGCAAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
8433783 GTTGCGAATTTGAAA
1 GTTGCGAATTTGAAA
8433798 AATACCAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (19 bp):
GTTGCGAATTTGAAATTCA
Found at i:8433831 original size:21 final size:21
Alignment explanation
Indices: 8433785--8433831 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8433775 GAAATTCAGT
8433785 TGCGAATTTGAAAAATACCAA
1 TGCGAATTTGAAAAATACCAA
* *
8433806 CGCGAATTTGGAAAAT-CGCAA
1 TGCGAATTTGAAAAATAC-CAA
8433827 TGCGA
1 TGCGA
8433832 TTTACATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (21 bp):
TGCGAATTTGAAAAATACCAA
Found at i:8433888 original size:20 final size:19
Alignment explanation
Indices: 8433839--8433892 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
8433829 CGATTTACAT
*
8433839 AATCGCGTTGCGAAATTGG
1 AATCGCGTTGCAAAATTGG
* *
8433858 AAACTGGGTTGCAAAATTGG
1 AATC-GCGTTGCAAAATTGG
8433878 AATTCGCGTTGCAAA
1 AA-TCGCGTTGCAAA
8433893 TTTGTTAGTC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.11
20 24 0.86
21 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (19 bp):
AATCGCGTTGCAAAATTGG
Found at i:8434751 original size:32 final size:31
Alignment explanation
Indices: 8434715--8434790 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
8434705 GGGGCCGTGA
8434715 GGCCTACCTAAGAACACATCTT-AGGGCCGCAG
1 GGCCTACCTAAGAA-ACAT-TTCAGGGCCGCAG
** **
8434747 GGCCTACCCGAGAATGATTTCAGGGCCGCAG
1 GGCCTACCTAAGAAACATTTCAGGGCCGCAG
*
8434778 AGCCTACCTAAGA
1 GGCCTACCTAAGA
8434791 GTCACATTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.06
31 22 0.61
32 12 0.33
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (31 bp):
GGCCTACCTAAGAAACATTTCAGGGCCGCAG
Found at i:8434766 original size:63 final size:63
Alignment explanation
Indices: 8434667--8434790 Score: 155
Period size: 63 Copynumber: 2.0 Consensus size: 63
8434657 CCCTAAGGGA
** *
8434667 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTTGGGGCCG-TGAGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCCGCAGA-GCCTACCTAAGAAC
* *
8434730 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATTTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATTTCAGGGCCGCAGAGCCTACCTAAGA
8434791 GTCACATTAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
62 2 0.04
63 49 0.92
64 2 0.04
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.19
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:8435671 original size:7 final size:7
Alignment explanation
Indices: 8435659--8435689 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
8435649 GTCAAAGGAA
8435659 GTCAACG
1 GTCAACG
8435666 GTCAACG
1 GTCAACG
8435673 GTCAACG
1 GTCAACG
8435680 GTCAACG
1 GTCAACG
8435687 GTC
1 GTC
8435690 GGGTCGGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.29, G:0.29, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:8435701 original size:17 final size:17
Alignment explanation
Indices: 8435679--8435738 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
8435669 AACGGTCAAC
*
8435679 GGTCAACGGTCGGGTCG
1 GGTCAACAGTCGGGTCG
8435696 GGTCAACAGTCGGGTCG
1 GGTCAACAGTCGGGTCG
**
8435713 GGTCGGGTCAGTCGGGTCG
1 GGTC--AACAGTCGGGTCG
8435732 GGTCAAC
1 GGTCAAC
8435739 CCGGGTTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 21 0.58
19 15 0.42
ACGTcount: A:0.13, C:0.23, G:0.45, T:0.18
Consensus pattern (17 bp):
GGTCAACAGTCGGGTCG
Found at i:8435714 original size:22 final size:19
Alignment explanation
Indices: 8435686--8435735 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 19
8435676 AACGGTCAAC
8435686 GGTCGGGTCGGGTCAACAGTCG
1 GGTCGGGTCGGGT---CAGTCG
8435708 GGTCGGGTCGGGTCAGTCG
1 GGTCGGGTCGGGTCAGTCG
8435727 GGTCGGGTC
1 GGTCGGGTC
8435736 AACCCGGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.54
22 13 0.46
ACGTcount: A:0.08, C:0.22, G:0.50, T:0.20
Consensus pattern (19 bp):
GGTCGGGTCGGGTCAGTCG
Found at i:8435728 original size:14 final size:14
Alignment explanation
Indices: 8435709--8435736 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8435699 CAACAGTCGG
8435709 GTCGGGTCGGGTCA
1 GTCGGGTCGGGTCA
8435723 GTCGGGTCGGGTCA
1 GTCGGGTCGGGTCA
8435737 ACCCGGGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.21, G:0.50, T:0.21
Consensus pattern (14 bp):
GTCGGGTCGGGTCA
Found at i:8435766 original size:19 final size:19
Alignment explanation
Indices: 8435732--8435783 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
8435722 AGTCGGGTCG
*
8435732 GGTCAACCCGGGTTCAGACC
1 GGTCAAACC-GGTTCAGACC
8435752 GGTCAAACCGGTTCAGACC
1 GGTCAAACCGGTTCAGACC
8435771 GGTCAAACCGGTT
1 GGTCAAACCGGTT
8435784 TTCCAGCAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 23 0.74
20 8 0.26
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (19 bp):
GGTCAAACCGGTTCAGACC
Found at i:8435773 original size:10 final size:10
Alignment explanation
Indices: 8435742--8435783 Score: 52
Period size: 9 Copynumber: 4.4 Consensus size: 10
8435732 GGTCAACCCG
*
8435742 GGTTCAGACC
1 GGTTCAAACC
8435752 GG-TCAAACC
1 GGTTCAAACC
*
8435761 GGTTCAGACC
1 GGTTCAAACC
8435771 GG-TCAAACC
1 GGTTCAAACC
8435780 GGTT
1 GGTT
8435784 TTCCAGCAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 16 0.59
10 11 0.41
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (10 bp):
GGTTCAAACC
Found at i:8442067 original size:32 final size:31
Alignment explanation
Indices: 8442031--8442106 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
8442021 GGGGCCGTGA
8442031 GGCCTACCTAAGAACACATCTT-AGGGCCGCAG
1 GGCCTACCTAAGAA-ACAT-TTCAGGGCCGCAG
** **
8442063 GGCCTACCCGAGAATGATTTCAGGGCCGCAG
1 GGCCTACCTAAGAAACATTTCAGGGCCGCAG
*
8442094 AGCCTACCTAAGA
1 GGCCTACCTAAGA
8442107 GTCACATTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.06
31 22 0.61
32 12 0.33
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (31 bp):
GGCCTACCTAAGAAACATTTCAGGGCCGCAG
Found at i:8442082 original size:63 final size:63
Alignment explanation
Indices: 8441983--8442106 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 63
8441973 CCCTAAGGGA
* *
8441983 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCGGGGCCG-TGAGGCCTACCTAAGAAC
1 ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCCGCAGA-GCCTACCTAAGAAC
* *
8442046 ACATCTTAGGGCC-GCAGGGCCTACCCGAGA-ATGATTTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCCTG-AGAGCCTACCCAAGATA-GATTTCAGGGCCGCAGAGCCTACCTAAGA
8442107 GTCACATTAG
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
62 2 0.04
63 50 0.93
64 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.27, T:0.18
Consensus pattern (63 bp):
ACATCTTAGGGCCTGAGAGCCTACCCAAGATAGATTTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:8443010 original size:17 final size:17
Alignment explanation
Indices: 8442988--8443042 Score: 101
Period size: 17 Copynumber: 3.2 Consensus size: 17
8442978 AACGGTCAAC
*
8442988 GGTCAACGGTCGGGTCG
1 GGTCAACAGTCGGGTCG
8443005 GGTCAACAGTCGGGTCG
1 GGTCAACAGTCGGGTCG
8443022 GGTCAACAGTCGGGTCG
1 GGTCAACAGTCGGGTCG
8443039 GGTC
1 GGTC
8443043 GGGTCGGGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.18
Consensus pattern (17 bp):
GGTCAACAGTCGGGTCG
Found at i:8447603 original size:20 final size:22
Alignment explanation
Indices: 8447563--8447610 Score: 73
Period size: 20 Copynumber: 2.2 Consensus size: 22
8447553 TAATATTTTT
8447563 TTAATTTTTCACATCTAAATATA
1 TTAA-TTTTCACATCTAAATATA
8447586 TTAATTTT-ACAT-TAAATATA
1 TTAATTTTCACATCTAAATATA
8447606 TTAAT
1 TTAAT
8447611 ATTTTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.52
21 4 0.16
22 4 0.16
23 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (22 bp):
TTAATTTTCACATCTAAATATA
Found at i:8448562 original size:7 final size:7
Alignment explanation
Indices: 8448550--8448612 Score: 72
Period size: 7 Copynumber: 9.0 Consensus size: 7
8448540 ACATAATCGA
8448550 GTTTAGG
1 GTTTAGG
8448557 GTTTAGG
1 GTTTAGG
*
8448564 GTTTAGT
1 GTTTAGG
*
8448571 GTTTAGT
1 GTTTAGG
* *
8448578 ATTTAAG
1 GTTTAGG
*
8448585 GCTTAGG
1 GTTTAGG
*
8448592 ATTTAGG
1 GTTTAGG
8448599 GTTTAGG
1 GTTTAGG
8448606 GTTTAGG
1 GTTTAGG
8448613 ATTCATTACA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.19, C:0.02, G:0.35, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:8450975 original size:2 final size:2
Alignment explanation
Indices: 8450968--8451018 Score: 86
Period size: 2 Copynumber: 26.0 Consensus size: 2
8450958 GATCAACAGG
8450968 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8451009 TA TT TA TA TA
1 TA TA TA TA TA
8451019 CAGCTTTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8456189 original size:13 final size:13
Alignment explanation
Indices: 8456171--8456203 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
8456161 TAGAAAAAAA
8456171 TTTAAAAGTG-ATT
1 TTTAAAAGTGTA-T
8456184 TTTAAAAGTGTAT
1 TTTAAAAGTGTAT
8456197 TTTAAAA
1 TTTAAAA
8456204 TTTAACTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 18 0.95
14 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (13 bp):
TTTAAAAGTGTAT
Found at i:8456476 original size:20 final size:19
Alignment explanation
Indices: 8456453--8456508 Score: 62
Period size: 17 Copynumber: 3.0 Consensus size: 19
8456443 ATATCAATTT
8456453 AAATTATAATAAAAATATA
1 AAATTATAATAAAAATATA
* * *
8456472 AAAATACAAATACAAATAT-
1 AAATTA-TAATAAAAATATA
8456491 -AATTATAATAAAAATATA
1 AAATTATAATAAAAATATA
8456509 TTTTATAAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 10 0.34
18 4 0.14
19 5 0.17
20 10 0.34
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATTATAATAAAAATATA
Found at i:8457368 original size:60 final size:60
Alignment explanation
Indices: 8457260--8457374 Score: 167
Period size: 60 Copynumber: 1.9 Consensus size: 60
8457250 TGGTCAAGTG
* * **
8457260 ATCATTTTGTAACTTTTACTAGTCAAGAGACTCAACAAAGCATTACTCTATAGTCATGAC
1 ATCATTTTGTAACTCTTAATAGTCAAGAGACTCAACAAAGCAACACTCTATAGTCATGAC
* * *
8457320 ATCATTTTGTAACTCTTAATAGTCCAGATACTCAACAAAGCAACACTCTGTAGTC
1 ATCATTTTGTAACTCTTAATAGTCAAGAGACTCAACAAAGCAACACTCTATAGTC
8457375 GGGGGACATT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 48 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (60 bp):
ATCATTTTGTAACTCTTAATAGTCAAGAGACTCAACAAAGCAACACTCTATAGTCATGAC
Found at i:8462181 original size:181 final size:181
Alignment explanation
Indices: 8461854--8462604 Score: 1026
Period size: 182 Copynumber: 4.1 Consensus size: 181
8461844 TGGCGGTTTA
* * *
8461854 TGTCGATACTTTA-AAAAACTGTATCGATCCACATCAATATAACAGGTAAAAAATATGATAAAAC
1 TGTCGATACTTTATAAAAA-TGTATCGATCCACAACGATATAACAGGT-AAAAATATGACAAAAC
* * * * * * * *
8461918 CGATCTCGAAAAGACAAAATCGGTA-A-AGCGATACTAGAGATATTGAAAGTGTCGATACTTTAA
64 CGGTCTCTAAAGGACAAAACCCGTATAGAGCG--AC-CGATATATTGAAAGTGTCAATACTTTAA
* *
8461981 TATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGTAATTTTAGCG-CTCATAAAG
126 TATAAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCT-ATAAAG
* *
8462037 TGTCGATACTTTATAACAATGTATCGATCTACAACGATATAACAGGTAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * *
8462102 GTCTCTAAAGGACAAAACCCGTAGAGAGCGACCGTTATATTGAAAGTGTCAATATTTTAATATAA
66 GTCTCTAAAGGACAAAACCCGTATAGAGCGACCGATATATTGAAAGTGTCAATACTTTAATATAA
* *
8462167 GTATCGACACTTTGTGAATTGAAAAGAGAATCAGTTTTAGCGCCTATAAAG
131 GTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * *
8462218 TGTCGATACTTTATAAAAATATATCAATCCACAACGATATAACAGATAAAAATATGACAAAACCG
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * * * * *
8462283 GTCTCTAAAGGATAAAA-CCGCTATAGAGCGATCGAATATATTTAAAGTGTCGATACATTAATCT
66 GTCTCTAAAGGACAAAACCCG-TATAGAGCGACCG-ATATATTGAAAGTGTCAATACTTTAATAT
* *
8462347 AAATATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCCATAAAG
129 AAGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
* * **
8462400 TGTCGATACTTTATAATAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACTA
1 TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
* * * *
8462465 GTCTCTAAAGGAAAAAACCGGTATAGAGTGACCAGATATATTTAAAGTGTCAATACTTTAATATA
66 GTCTCTAAAGGACAAAACCCGTATAGAGCGACC-GATATATTGAAAGTGTCAATACTTTAATATA
8462530 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
130 AGTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
*
8462582 TGTCGATACTTTATAACAATGTA
1 TGTCGATACTTTATAAAAATGTA
8462605 ACCCCTCAGA
Statistics
Matches: 506, Mismatches: 54, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
180 3 0.01
181 159 0.31
182 294 0.58
183 42 0.08
184 8 0.02
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (181 bp):
TGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAACAGGTAAAAATATGACAAAACCG
GTCTCTAAAGGACAAAACCCGTATAGAGCGACCGATATATTGAAAGTGTCAATACTTTAATATAA
GTATCGACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAG
Found at i:8463184 original size:2 final size:2
Alignment explanation
Indices: 8463177--8463237 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
8463167 CTCATAACGG
8463177 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8463219 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
8463238 AAATTTAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8463302 original size:24 final size:24
Alignment explanation
Indices: 8463255--8463327 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
8463245 AAACATAATT
* * * *
8463255 CAGGTCAAGTAGCAGATCAGAATC
1 CAGGTCAAGTATCATATAAAAATC
* *
8463279 CATGTCATGTATCATATAAAAATC
1 CAGGTCAAGTATCATATAAAAATC
*
8463303 CAGGTCAAGTATCATATCAAAATC
1 CAGGTCAAGTATCATATAAAAATC
8463327 C
1 C
8463328 CGTCAAAAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (24 bp):
CAGGTCAAGTATCATATAAAAATC
Found at i:8463339 original size:23 final size:24
Alignment explanation
Indices: 8463289--8463345 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
8463279 CATGTCATGT
* **
8463289 ATCATATAAAAATCCAGGTCAAGT
1 ATCATATAAAAATCCACGTCAAAA
*
8463313 ATCATATCAAAATCC-CGTCAAAA
1 ATCATATAAAAATCCACGTCAAAA
*
8463336 ATCAGATAAA
1 ATCATATAAA
8463346 CTATTCATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (24 bp):
ATCATATAAAAATCCACGTCAAAA
Found at i:8464072 original size:29 final size:29
Alignment explanation
Indices: 8464026--8464213 Score: 245
Period size: 29 Copynumber: 6.6 Consensus size: 29
8464016 ATCAACCATT
8464026 TTACGAAAATAGCACCCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8464055 TTACGAAAATAGCTCCCTTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* * *
8464084 TTACTAAAATAACA-TCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8464112 TTACGAAAATATCACCCTTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8464141 TTACTAAAATAGCA-TCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* * *
8464169 TTACAAAAATAGCACCATTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
*
8464198 TTACTAAAATAGCACC
1 TTACGAAAATAGCACC
8464214 TGATCAACGG
Statistics
Matches: 137, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
28 49 0.36
29 88 0.64
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (29 bp):
TTACGAAAATAGCACCCTTTTAAAAATAA
Found at i:8464190 original size:86 final size:85
Alignment explanation
Indices: 8464026--8464213 Score: 261
Period size: 86 Copynumber: 2.2 Consensus size: 85
8464016 ATCAACCATT
* *
8464026 TTACGAAAATAGCACCCTTTTAAAAATAATTACGAAAATAGCTCCCTTTTAGAAATAATTACTAA
1 TTACGAAAATAGCACCCTTTTAAAAATAATTACGAAAATAGCT-CCTTTTAAAAATAATTACAAA
*
8464091 AATAACATCTTTTAAAAATAA
65 AATAACACCTTTTAAAAATAA
* * *
8464112 TTACGAAAATATCACCCTTTTAGAAATAATTACTAAAATAGCAT-CTTTTAAAAATAATTACAAA
1 TTACGAAAATAGCACCCTTTTAAAAATAATTACGAAAATAGC-TCCTTTTAAAAATAATTACAAA
* *
8464176 AATAGCACCATTTTAGAAATAA
65 AATAACACC-TTTTAAAAATAA
*
8464198 TTACTAAAATAGCACC
1 TTACGAAAATAGCACC
8464214 TGATCAACGG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
85 25 0.28
86 64 0.71
87 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (85 bp):
TTACGAAAATAGCACCCTTTTAAAAATAATTACGAAAATAGCTCCTTTTAAAAATAATTACAAAA
ATAACACCTTTTAAAAATAA
Found at i:8464209 original size:57 final size:57
Alignment explanation
Indices: 8464026--8464211 Score: 300
Period size: 57 Copynumber: 3.2 Consensus size: 57
8464016 ATCAACCATT
* * *
8464026 TTACGAAAATAGCACCCTTTTAAAAATAATTACGAAAATAGCTCCCTTTTAGAAATAA
1 TTACTAAAATAGCA-TCTTTTAAAAATAATTACGAAAATAGCACCCTTTTAGAAATAA
* *
8464084 TTACTAAAATAACATCTTTTAAAAATAATTACGAAAATATCACCCTTTTAGAAATAA
1 TTACTAAAATAGCATCTTTTAAAAATAATTACGAAAATAGCACCCTTTTAGAAATAA
* *
8464141 TTACTAAAATAGCATCTTTTAAAAATAATTACAAAAATAGCACCATTTTAGAAATAA
1 TTACTAAAATAGCATCTTTTAAAAATAATTACGAAAATAGCACCCTTTTAGAAATAA
8464198 TTACTAAAATAGCA
1 TTACTAAAATAGCA
8464212 CCTGATCAAC
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 107 0.90
58 12 0.10
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (57 bp):
TTACTAAAATAGCATCTTTTAAAAATAATTACGAAAATAGCACCCTTTTAGAAATAA
Found at i:8470454 original size:35 final size:35
Alignment explanation
Indices: 8470364--8470464 Score: 166
Period size: 35 Copynumber: 2.9 Consensus size: 35
8470354 CGTCAAGTCT
* *
8470364 AGTAAGACCCTGAGCACACAACCGAGGAGCCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAGCCGGTA
8470399 AGTAAGGCCCTGAGCACACAGCCGAGGAGCCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAGCCGGTA
* *
8470434 AGTAAGGCCCTGAGCACACAGCAGATGAGCC
1 AGTAAGGCCCTGAGCACACAGCCGAGGAGCC
8470465 TCCAGGTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.32, C:0.29, G:0.31, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAGCCGGTA
Found at i:8470533 original size:2 final size:2
Alignment explanation
Indices: 8470526--8470634 Score: 218
Period size: 2 Copynumber: 54.5 Consensus size: 2
8470516 CATAACGGAA
8470526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8470568 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8470610 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8470635 AATTTAAAAC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 107 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8470698 original size:24 final size:24
Alignment explanation
Indices: 8470671--8470723 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8470661 AGCAGATCGT
* *
8470671 AATCCATGTCATGCATCATATAAA
1 AATCCAGGTCAAGCATCATATAAA
* *
8470695 AATCCAGGTCAAGTATCATATCAA
1 AATCCAGGTCAAGCATCATATAAA
8470719 AATCC
1 AATCC
8470724 CGTCAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (24 bp):
AATCCAGGTCAAGCATCATATAAA
Found at i:8470735 original size:23 final size:24
Alignment explanation
Indices: 8470685--8470741 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
8470675 CATGTCATGC
* **
8470685 ATCATATAAAAATCCAGGTCAAGT
1 ATCATATAAAAATCCACGTCAAAA
*
8470709 ATCATATCAAAATCC-CGTCAAAA
1 ATCATATAAAAATCCACGTCAAAA
*
8470732 ATCAGATAAA
1 ATCATATAAA
8470742 CTATTCATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.49, C:0.19, G:0.09, T:0.23
Consensus pattern (24 bp):
ATCATATAAAAATCCACGTCAAAA
Found at i:8471477 original size:29 final size:29
Alignment explanation
Indices: 8471433--8471620 Score: 247
Period size: 29 Copynumber: 6.6 Consensus size: 29
8471423 ATCAACCATT
8471433 TTACGAAAATAGCACCCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* * * *
8471462 TTACAAAAATAACACCATTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
*
8471491 TTACTAAAATAGCA-CCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8471519 TTACGAAAATAACACCCTTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8471548 TTAC-TAAATAG-AACCTTTTAAAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
* *
8471575 TTACGAAAATAGCACCATTTTAGAAATAA
1 TTACGAAAATAGCACCCTTTTAAAAATAA
*
8471604 TTACTAAAATAGCACCC
1 TTACGAAAATAGCACCC
8471621 GGTCAACGGG
Statistics
Matches: 135, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 18 0.13
28 35 0.26
29 82 0.61
ACGTcount: A:0.49, C:0.16, G:0.06, T:0.29
Consensus pattern (29 bp):
TTACGAAAATAGCACCCTTTTAAAAATAA
Found at i:8471528 original size:57 final size:57
Alignment explanation
Indices: 8471433--8471619 Score: 313
Period size: 57 Copynumber: 3.3 Consensus size: 57
8471423 ATCAACCATT
* *
8471433 TTACGAAAATAGCACCCTTTTAAAAATAATTACAAAAATAACACCATTTTAGAAATAA
1 TTACTAAAATAGCA-CCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAA
*
8471491 TTACTAAAATAGCACCTTTTAAAAATAATTACGAAAATAACACCCTTTTAGAAATAA
1 TTACTAAAATAGCACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAA
* *
8471548 TTACT-AAATAGAACCTTTTAAAAATAATTACGAAAATAGCACCATTTTAGAAATAA
1 TTACTAAAATAGCACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAA
8471604 TTACTAAAATAGCACC
1 TTACTAAAATAGCACC
8471620 CGGTCAACGG
Statistics
Matches: 121, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
56 53 0.44
57 55 0.45
58 13 0.11
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.29
Consensus pattern (57 bp):
TTACTAAAATAGCACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAA
Found at i:8471583 original size:56 final size:56
Alignment explanation
Indices: 8471439--8471611 Score: 283
Period size: 56 Copynumber: 3.1 Consensus size: 56
8471429 CATTTTACGA
* *
8471439 AAATAGCACCCTTTTAAAAATAATTACAAAAATAACACCATTTTAGAAATAATTACT
1 AAATAG-AACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAATTACT
* *
8471496 AAAATAGCACCTTTTAAAAATAATTACGAAAATAACACCCTTTTAGAAATAATTACT
1 -AAATAGAACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAATTACT
*
8471553 AAATAGAACCTTTTAAAAATAATTACGAAAATAGCACCATTTTAGAAATAATTACT
1 AAATAGAACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAATTACT
8471609 AAA
1 AAA
8471612 ATAGCACCCG
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
56 56 0.52
57 46 0.43
58 6 0.06
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.29
Consensus pattern (56 bp):
AAATAGAACCTTTTAAAAATAATTACGAAAATAACACCATTTTAGAAATAATTACT
Found at i:8474943 original size:21 final size:21
Alignment explanation
Indices: 8474919--8474964 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8474909 TATCATGCAA
8474919 AGACAATCA-AGAGTCGAAGAG
1 AGAC-ATCAGAGAGTCGAAGAG
* *
8474940 AGACTTGAGAGAGTCGAAGAG
1 AGACATCAGAGAGTCGAAGAG
8474961 AGAC
1 AGAC
8474965 TTGAGAGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.43, C:0.13, G:0.33, T:0.11
Consensus pattern (21 bp):
AGACATCAGAGAGTCGAAGAG
Found at i:8474965 original size:21 final size:21
Alignment explanation
Indices: 8474928--8474971 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8474918 AAGACAATCA
8474928 AGAGTCGAAGAGAGACTTGAG
1 AGAGTCGAAGAGAGACTTGAG
8474949 AGAGTCGAAGAGAGACTTGAG
1 AGAGTCGAAGAGAGACTTGAG
8474970 AG
1 AG
8474972 GCATAAGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.39, T:0.14
Consensus pattern (21 bp):
AGAGTCGAAGAGAGACTTGAG
Found at i:8475044 original size:33 final size:33
Alignment explanation
Indices: 8475005--8475104 Score: 182
Period size: 33 Copynumber: 3.0 Consensus size: 33
8474995 AACTAGTTGG
8475005 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
* *
8475038 ATTGGTGAAAGAAGTTGAGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
8475071 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
8475104 A
1 A
8475105 CTTAAGATGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.29, C:0.00, G:0.46, T:0.25
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTTGAGGTGTTGAGGGGTGA
Found at i:8475316 original size:18 final size:18
Alignment explanation
Indices: 8475289--8475326 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8475279 AAAAAATATA
8475289 AAGAAGAAAAGATGGAGG
1 AAGAAGAAAAGATGGAGG
*
8475307 AAGAATAAAAGATGGAGG
1 AAGAAGAAAAGATGGAGG
8475325 AA
1 AA
8475327 ATAAGGAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.34, T:0.08
Consensus pattern (18 bp):
AAGAAGAAAAGATGGAGG
Found at i:8476905 original size:19 final size:19
Alignment explanation
Indices: 8476881--8476929 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
8476871 AATGTAGGGT
8476881 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
8476900 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
8476919 TAATTTTGTAT
1 TAATTTTGTAT
8476930 GTGAATGTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:8477547 original size:199 final size:199
Alignment explanation
Indices: 8477193--8478150 Score: 1116
Period size: 199 Copynumber: 4.8 Consensus size: 199
8477183 GTAAGTAGAT
8477193 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
** * * *
8477258 TATAATTTTGT-AATATAACCGGTATAAATATACCAGTTTTATGTGAGAATAGGTCTACATAATG
66 GGTAATTTT-TCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATG
* * *
8477322 TATCGACACTTTTGAAATTGGTGTCGATACTTTTTGTCCAGAATGAAT-CCCAAAATGGTGAACT
130 TATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAATGGTG-ACT
8477386 CATAAA
194 CATAAA
* *
8477392 GTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
*
8477457 GGTAATTTTTCAACGTAACCGGTA-AAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATG
66 GGTAATTTTTCAATGTAACCGGTATAAA-TATACCGGTTTTATGAGAGAATAGGTCTACATAATG
* *
8477521 TATCGACACTTATGGAATTTGTGTCGATACTTTCTGTCCAGAATGAATGCCCAAAATGGT--C-G
130 TATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAATGGTGACTC
*
8477583 ATACA
195 ATAAA
* ** ** * * * * * * *
8477588 -TTTTTA-ACAATTATCGATCCCAGAGACATCAAACCCAGAGACTTCG-AACCCATAATTATAAT
1 GTGTCGATAC-ATT-T--AT-AAAAAG-TATCGATCCCAAAAACATCGAAACCCATAATTATAAT
* * * *
8477650 GTAATAGATAATTTTAT-AATGTAACCAGTATAAATATACCGGTTTTATGTGAGAATAGGCCTAC
60 GTAATAGGTAATTTT-TCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTAC
* ** * * *
8477714 ATAATGTATCGTCACTT-TTTAATTATGTGTCGATACATTTTGTCCAGAGTAAATGCCCAAAAAA
124 ATAATGTATCGACACTTATGGAATT-TGTGTCGATACTTTTTGTCCAGAATGAATGCCC--AAAA
8477778 TGGTGCACGT-ATAAA
186 TGGTG-AC-TCATAAA
* * *
8477793 GTGTCGATACATTTATAAAAGGTATCGATCCCATAAACATCGAAACCCATGATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * *
8477858 GGTAATTTTTCAATGTAACTGGTATAAATATACCGGTTTTATGCGAGAATAGGTCTAGAAAATAT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
* * *
8477923 ATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCAGAAGGAATG-CCAAAAGGGTGTACCC
131 ATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAATGGTG-ACTC
*
8477987 ATTAA
195 ATAAA
* * ***
8477992 GTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCAAAACTGGTAATTATAATGTAATA
1 GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * * *
8478057 GGTAAATTTTCAATGTAACCGATATAAATATATCGATATTATGAGAAAATAGGTC-AGCATAAAG
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTA-CATAATG
*
8478121 TATCGATACTTATGGAATTTGTGTCGATAC
130 TATCGACACTTATGGAATTTGTGTCGATAC
8478151 CATTTTAAAA
Statistics
Matches: 642, Mismatches: 91, Indels: 52
0.82 0.12 0.07
Matches are distributed among these distances:
194 2 0.00
195 6 0.01
196 5 0.01
197 1 0.00
198 12 0.02
199 426 0.66
200 31 0.05
201 25 0.04
202 113 0.18
203 7 0.01
204 1 0.00
205 5 0.01
206 6 0.01
207 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (199 bp):
GTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACATAATGT
ATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAAAATGGTGACTCA
TAAA
Found at i:8477626 original size:15 final size:15
Alignment explanation
Indices: 8477606--8477639 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8477596 AATTATCGAT
8477606 CCCAGAGACATCAAA
1 CCCAGAGACATCAAA
* *
8477621 CCCAGAGACTTCGAA
1 CCCAGAGACATCAAA
8477636 CCCA
1 CCCA
8477640 TAATTATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.09
Consensus pattern (15 bp):
CCCAGAGACATCAAA
Found at i:8478047 original size:401 final size:383
Alignment explanation
Indices: 8477191--8478156 Score: 1107
Period size: 401 Copynumber: 2.4 Consensus size: 383
8477181 AGGTAAGTAG
* * **
8477191 ATGTGTCGATACATTTATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAA
1 ATGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCAAAACTGATAATTATAATGTAA
* * *
8477256 TATATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGTGAGAATAGGTCTACATAAT
66 TAGATAATTTT-TAATGTAACC-GTATAAATATACCAGTTTTATGTGAGAATAGGCCTACATAAT
* *
8477321 GTATCGACACTTTTGAAATTGGTGTCGATACTTTTTGTCCAGAATGAATCCCAAAATGGTGAACT
129 GTATCGACACTTTTGAAATTGGTGTCGATACATTTTGTCCAGAATAAATCCCAAAATGGTGAACT
8477386 CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAAT
194 CATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAAT
8477451 GTAATAGGTAATTTTTCAACGTAACCGGTAAAACTATACCGGTTTTATGAGAGAATAGGTCTACA
259 GTAATAGGTAATTTTTCAACGTAACCGGTAAAACTATACCGGTTTTATGAGAGAATAGGTCTACA
* * * *
8477516 TAATGTATCGACACTTATGGAATTTGTGTCGATACTTTCTGTCCAGAATGAATGCCCAAA
324 AAATATATCGACACTTATGGAATTTGTGTCGATACTTTCTGTCCAGAAGGAATGCCAAAA
* * * *
8477576 ATG-GTCGATACATTTTTAACAATTATCGATCCCAGAGACATCAAACCCAGAGACTTCGAACCCA
1 ATGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATC--A---A-A-AC-T-G-----A
*
8477640 TAATTATAATGTAATAGATAATTTTATAATGTAACCAGTATAAATATACCGGTTTTATGTGAGAA
52 TAATTATAATGTAATAGATAATTTT-TAATGTAACC-GTATAAATATACCAGTTTTATGTGAGAA
* * * *
8477705 TAGGCCTACATAATGTATCGTCACTTTT-TAATTATGTGTCGATACATTTTGTCCAGAGTAAATG
115 TAGGCCTACATAATGTATCGACACTTTTGAAATT-GGTGTCGATACATTTTGTCCAGAATAAAT-
* * * *
8477769 CCCAAAAAATGGTGCACGT-ATAAAGTGTCGATACATTTATAAAAGGTATCGATCCCATAAACAT
178 CCC--AAAATGGTGAAC-TCATAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACAT
* * *
8477833 CGAAACCCATGATTATAATGTAATAGGTAATTTTTCAATGTAACTGGTATAAA-TATACCGGTTT
240 CGAAACCCATAATTATAATGTAATAGGTAATTTTTCAACGTAACCGGTA-AAACTATACCGGTTT
* * *
8477897 TATGCGAGAATAGGTCTAGAAAATATATCGACACTTATGGAATTTGTGTCGATACTTTTTGTCCA
304 TATGAGAGAATAGGTCTACAAAATATATCGACACTTATGGAATTTGTGTCGATACTTTCTGTCCA
8477962 GAAGGAATGCCAAAAGGGTGTA
369 GAAGGAATGCC-AAA------A
*
8477984 CCCATTAAGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCAAAACTGGTAATTATA
1 ---A-T--GTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCAAAACTGATAATTATA
* * * * * * *
8478049 ATGTAATAGGTAAATTTTCAATGTAACCGATATAAATATATC-GATATTATGAGAAAATAGGTC-
60 ATGTAATAGAT-AATTTTTAATGTAACCG-TATAAATATACCAG-TTTTATGTGAGAATAGGCCT
* * * * *
8478112 AGCATAAAGTATCGATACTTATGGAATTTGTGTCGATACCATTTT
122 A-CATAATGTATCGACACTTTTGAAATTGGTGTCGATA-CATTTT
8478157 AAAAATCGCA
Statistics
Matches: 490, Mismatches: 51, Indels: 63
0.81 0.08 0.10
Matches are distributed among these distances:
384 34 0.07
385 3 0.01
389 1 0.00
390 1 0.00
391 2 0.00
397 4 0.01
398 112 0.23
399 3 0.01
400 3 0.01
401 259 0.53
402 22 0.04
406 1 0.00
407 1 0.00
408 3 0.01
409 1 0.00
410 1 0.00
411 1 0.00
412 1 0.00
413 1 0.00
414 1 0.00
415 35 0.07
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (383 bp):
ATGTGTCGATACATTTTTAAAAAGTATCGATCCCAAAAACATCAAAACTGATAATTATAATGTAA
TAGATAATTTTTAATGTAACCGTATAAATATACCAGTTTTATGTGAGAATAGGCCTACATAATGT
ATCGACACTTTTGAAATTGGTGTCGATACATTTTGTCCAGAATAAATCCCAAAATGGTGAACTCA
TAAAGTGTCGATACATTTATAAAAAGTATCAATCCCAGAAACATCGAAACCCATAATTATAATGT
AATAGGTAATTTTTCAACGTAACCGGTAAAACTATACCGGTTTTATGAGAGAATAGGTCTACAAA
ATATATCGACACTTATGGAATTTGTGTCGATACTTTCTGTCCAGAAGGAATGCCAAAA
Found at i:8478818 original size:2 final size:2
Alignment explanation
Indices: 8478811--8478836 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8478801 ATGGGGAAGG
8478811 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8478837 CTCTGGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8479663 original size:3 final size:3
Alignment explanation
Indices: 8479650--8479708 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
8479640 CAAGAGGTCA
* *
8479650 ATG AAG ATG ATG ATG AAG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
8479698 ATT ATG ATG AT
1 ATG ATG ATG AT
8479709 CCAAACAAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.37, C:0.00, G:0.31, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:8480835 original size:13 final size:13
Alignment explanation
Indices: 8480817--8480871 Score: 92
Period size: 13 Copynumber: 4.2 Consensus size: 13
8480807 TGCGTCATAA
8480817 ATTTATGACGCGC
1 ATTTATGACGCGC
*
8480830 ATTTATGACACGC
1 ATTTATGACGCGC
8480843 ATTTATGACGCGC
1 ATTTATGACGCGC
*
8480856 ATTTATGACGCTC
1 ATTTATGACGCGC
8480869 ATT
1 ATT
8480872 GCTCGTCATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (13 bp):
ATTTATGACGCGC
Found at i:8480948 original size:85 final size:85
Alignment explanation
Indices: 8480844--8481008 Score: 194
Period size: 85 Copynumber: 1.9 Consensus size: 85
8480834 ATGACACGCA
* * * ** *
8480844 TTTATGACGCGCATTTATGACGCT-CATTGC-TCGTCATTGAAACCCCCGTCA-TAAATGAAGAT
1 TTTATGACACGCATGTATGAC-CTACATTGCGT-GTCATTGAAACACAAGTCATTAAA-AAAGAT
8480906 GACACACATT-TGTGTGTCATAAC
63 GACACACATTCT-TGTGTCATAAC
* *
8480929 TTTATGACACGCATGTATGACTTACATTGCGTGTCATTGAAGCACAAGTCATTAAAAAAGATGAC
1 TTTATGACACGCATGTATGACCTACATTGCGTGTCATTGAAACACAAGTCATTAAAAAAGATGAC
8480994 ACACATTCTTGTGTC
66 ACACATTCTTGTGTC
8481009 GTGAATGTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
84 1 0.01
85 61 0.90
86 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (85 bp):
TTTATGACACGCATGTATGACCTACATTGCGTGTCATTGAAACACAAGTCATTAAAAAAGATGAC
ACACATTCTTGTGTCATAAC
Found at i:8481035 original size:2 final size:2
Alignment explanation
Indices: 8481028--8481060 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8481018 TTTCATAAAT
8481028 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8481061 TGCAGATTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8486664 original size:24 final size:24
Alignment explanation
Indices: 8486637--8486692 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
8486627 TTTCAAGTTC
8486637 ATTTCATATGT-AATTGGAGTTTGA
1 ATTTCA-ATGTCAATTGGAGTTTGA
* *
8486661 ATTTCAATTTCAATTTGAGTTTGA
1 ATTTCAATGTCAATTGGAGTTTGA
*
8486685 GTTTCAAT
1 ATTTCAAT
8486693 ATTAGCCCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 3 0.11
24 25 0.89
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (24 bp):
ATTTCAATGTCAATTGGAGTTTGA
Found at i:8487022 original size:20 final size:20
Alignment explanation
Indices: 8486984--8487022 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8486974 CGAAACCCAT
* *
8486984 ATTTATAATGTAATAGGTAA
1 ATTTACAATGTAACAGGTAA
*
8487004 ATTTACAATGTAACCGGTA
1 ATTTACAATGTAACAGGTA
8487023 TAACTATACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (20 bp):
ATTTACAATGTAACAGGTAA
Found at i:8487088 original size:199 final size:200
Alignment explanation
Indices: 8486748--8487277 Score: 769
Period size: 199 Copynumber: 2.7 Consensus size: 200
8486738 GAAGCATCGG
* * * * * **
8486748 TATAAAAAGTATTGATCCAAAAAACATCGAAACCCATAATTATAATATAATAAGTAATTTTGTAA
1 TATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
* * ** * * * * *
8486813 TATAACCGGTATAAATATATTGATTTTATGTGAGAATAAGTTTACATAATGTGTCGACACTT-TT
66 TGTAACCGGTATAACTATACCGATTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
* *
8486877 GAATTTTGTGTCGATACTTTTTGTCCAGAATGAATCCCAAAATGG-TGAACGCATAAAGTGTCGA
131 GAATTTTGTGTCGATACTTTTTGTCCAAAATGAATCCCAAAAGGGTTGAACGCATAAAGTGTCGA
8486941 TACATT
196 -ACATT
* *
8486947 TATAAAAAGTATCGATCCCAGAAACATCGAAACCCATATTTATAATGTAATAGGTAAATTTACAA
1 TATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
8487012 TGTAACCGGTATAACTATACCGATTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
66 TGTAACCGGTATAACTATACCGATTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
* * * *
8487077 GAA-TTTGTGTCGATACTTTTTGTCTAAAATGAATGCCAAAAGGGTTGCATGCATAAAGTGTCGA
131 GAATTTTGTGTCGATACTTTTTGTCCAAAATGAATCCCAAAAGGGTTGAACGCATAAAGTGTCGA
8487141 ACATT
196 ACATT
* ** *
8487146 TTTAAAAAGTATCGATCCCAAAAACATCGAAACTGATAATTATAATGTAATAGGTAAATGTACAA
1 TATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
*
8487211 TGTAACCGGTATAACTATACCGGTTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
66 TGTAACCGGTATAACTATACCGATTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
8487276 GA
131 GA
8487278 TGCTTGTGCT
Statistics
Matches: 298, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
199 277 0.93
200 21 0.07
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.32
Consensus pattern (200 bp):
TATAAAAAGTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTTACAA
TGTAACCGGTATAACTATACCGATTTTATGAGAGAATAGGTCTACATAATGTATCGACACTTATG
GAATTTTGTGTCGATACTTTTTGTCCAAAATGAATCCCAAAAGGGTTGAACGCATAAAGTGTCGA
ACATT
Found at i:8489122 original size:200 final size:197
Alignment explanation
Indices: 8488765--8489241 Score: 640
Period size: 200 Copynumber: 2.4 Consensus size: 197
8488755 TGTCCAGAAT
* * *
8488765 ATAAATTGTTGATACATTTATTAAAAGTATCGATCCCAATAACATTGAAACCGATAATTATAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGAT-CCAA-AACATCGAAACCGATAATTATAATG
* * * *
8488830 TAATAGGTAAATTTACAATGTAACTGGTATAAATATACCGGTTTTATAAGAAAATAGGTCAGCAT
64 TAATAGGTAAATTTACAATGTAACTGATAGAAATATACCAGTTTTATAAGAAAATAGGTCAGAAT
* * *
8488895 AAAGTATCGACACCATTTAAATTTGTGTCTATACTTTTTGTCCATAATGAATGCCAAACGGGGTG
129 AAAGTATCGACACCATTTAAATTTGTGTCGATACTTTTT-TCCAGAATGAATGCCAAACGAGGTG
8488960 CATGC
193 CATGC
*
8488965 ATAAAGTGTCGATACATTTATTAAAAGTATCGATCTCACAAACATCGAAACCGATAATTACAATG
1 ATAAAGTGTCGATACATTTATTAAAAGTATCGATC-CA-AAACATCGAAACCGATAATTATAATG
* *
8489030 TGATAGGTAAATTTACAATGTACAC-GATAGAAATATACCAGTTTTATGAGAAAATAGGTCTA-A
64 TAATAGGTAAATTTACAATGTA-ACTGATAGAAATATACCAGTTTTATAAGAAAATAGGTC-AGA
* ** * *
8489093 ATAATGTATCGACACTTTTTAAGTTTGTGTCGATACTTTTTTCCAGAATGAATGCCCAACGAGGT
127 ATAAAGTATCGACACCATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAACGAGGT
8489158 GCATGC
192 GCATGC
* *
8489164 ATAAAGTGTCGATACATTTA--AAATTA-TATCAATCCAAAAAACATCGAAATCGATAATTATAA
1 ATAAAGTGTCGATACATTTATTAAA--AGTATCGATCC--AAAACATCGAAACCGATAATTATAA
8489226 TGTAATAGGTAAATTT
62 TGTAATAGGTAAATTT
8489242 GTAATGTTAC
Statistics
Matches: 247, Mismatches: 22, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
197 4 0.02
198 44 0.18
199 50 0.20
200 145 0.59
201 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (197 bp):
ATAAAGTGTCGATACATTTATTAAAAGTATCGATCCAAAACATCGAAACCGATAATTATAATGTA
ATAGGTAAATTTACAATGTAACTGATAGAAATATACCAGTTTTATAAGAAAATAGGTCAGAATAA
AGTATCGACACCATTTAAATTTGTGTCGATACTTTTTTCCAGAATGAATGCCAAACGAGGTGCAT
GC
Found at i:8489393 original size:87 final size:87
Alignment explanation
Indices: 8489288--8489450 Score: 281
Period size: 87 Copynumber: 1.9 Consensus size: 87
8489278 AAATAAGTCA
* * *
8489288 ATATAAGCGCTACATATTATATTATATAAGCGCTACCTCATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCCACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
8489353 TCGGTTAAATGCCTATTTTATT
66 TCGGTTAAATGCCTATTTTATT
* *
8489375 ATATAAGCGCCACCTATTACATTATATAAGTGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCCACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
8489440 TCGGTTAAATG
66 TCGGTTAAATG
8489451 ATATAACATA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCCACATATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
TCGGTTAAATGCCTATTTTATT
Found at i:8489422 original size:23 final size:23
Alignment explanation
Indices: 8489372--8489416 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8489362 TGCCTATTTT
*
8489372 ATTATATAAGCGCCACCTATTAC
1 ATTATATAAGCGCCACCTAATAC
* *
8489395 ATTATATAAGTGCTACCTAATA
1 ATTATATAAGCGCCACCTAATA
8489417 TGTTATTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCCACCTAATAC
Found at i:8491425 original size:18 final size:18
Alignment explanation
Indices: 8491402--8491438 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8491392 CCAAGATGAC
8491402 TAGTTCGAGTCAAGAGAT
1 TAGTTCGAGTCAAGAGAT
8491420 TAGTTCGAGTCAAGAGAT
1 TAGTTCGAGTCAAGAGAT
8491438 T
1 T
8491439 TTGATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (18 bp):
TAGTTCGAGTCAAGAGAT
Found at i:8504539 original size:12 final size:11
Alignment explanation
Indices: 8504521--8504570 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
8504511 CAGAAATAAC
8504521 AAAAAATAGAA
1 AAAAAATAGAA
8504532 AGAAAAATAGAA
1 A-AAAAATAGAA
* *
8504544 AAAAAAGAAAA
1 AAAAAATAGAA
*
8504555 AAAGAAAAAGAA
1 AAA-AAATAGAA
8504567 AAAA
1 AAAA
8504571 TTTTGAACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 13 0.39
12 20 0.61
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (11 bp):
AAAAAATAGAA
Found at i:8504545 original size:8 final size:8
Alignment explanation
Indices: 8504491--8504563 Score: 56
Period size: 8 Copynumber: 8.2 Consensus size: 8
8504481 ATTCGATTTT
8504491 AAAAGAAGA
1 AAAAGAA-A
*
8504500 AGAAGAAA
1 AAAAGAAA
8504508 AAACAGAAA
1 AAA-AGAAA
*
8504517 TAACAAAAAA
1 -AA-AAGAAA
8504527 TAGAAAGAAA
1 -A-AAAGAAA
*
8504537 AATAGAAAA
1 AAAAG-AAA
8504546 AAAAGAAA
1 AAAAGAAA
8504554 AAAAGAAA
1 AAAAGAAA
8504562 AA
1 AA
8504564 GAAAAAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
8 19 0.36
9 19 0.36
10 13 0.25
11 2 0.04
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAGAAA
Found at i:8504552 original size:17 final size:17
Alignment explanation
Indices: 8504491--8504563 Score: 67
Period size: 17 Copynumber: 4.1 Consensus size: 17
8504481 ATTCGATTTT
*
8504491 AAAAGAAGAAGAAGAAAA
1 AAAAGAA-AAAAAGAAAA
*
8504509 AACAGAAATAACAA-AAAA
1 AAAAGAAA-AA-AAGAAAA
*
8504527 TAGAAAGAAAAATAGAAAA
1 -A-AAAGAAAAAAAGAAAA
8504546 AAAAGAAAAAAAGAAAA
1 AAAAGAAAAAAAGAAAA
8504563 A
1 A
8504564 GAAAAAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
17 17 0.38
18 13 0.29
19 9 0.20
20 6 0.13
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.04
Consensus pattern (17 bp):
AAAAGAAAAAAAGAAAA
Found at i:8507378 original size:209 final size:211
Alignment explanation
Indices: 8506968--8507378 Score: 616
Period size: 209 Copynumber: 1.9 Consensus size: 211
8506958 CTTCCTAACG
* * *
8506968 CGTAATCGACTCTCGAACTCAATTTTTGGTACGCATACCTTAAAATGTTATTTTAATAATTTTTA
1 CGTAATCGACTCCCAAACTCAATTTTTGGAACGCATACCTTAAAATGTTATTTTAATAA---TTA
*
8507033 AATTAAATTTTATTAAAATGACAAAACATTTTGGTTGCCCAATCACACCCTAATCAAAGATTGGT
63 AATTAAATTTTATTAAAATGACAAAACATTTTGGGTGCCCAATCACACCCTAATCAAAGATTGGT
* *
8507098 GACGATTCCTCAAAATTTTTTATTTTGATTTTTAAAAGGAAACCCCAAATTAATCGAGACAAGAT
128 GACGATTCCTCAAAATGTTTTATTTTGATTTTTAAAAGGAAAACCCAAATTAATCGAGACAAGAT
8507163 TTTTTTTTAATTTCCCACA
193 TTTTTTTTAATTTCCCACA
8507182 CGTAATCGACTCCCAAACTCAATTTTTGGAACGC-TAACCTTAAAATGTTATTTTAATAA-T-AA
1 CGTAATCGACTCCCAAACTCAATTTTTGGAACGCAT-ACCTTAAAATGTTATTTTAATAATTAAA
* * *
8507244 TTAAATTTTATTAAAATGACAAAATATTTTGGGTGCCCAATCACACCCTAATTAAAGATTGGTGT
65 TTAAATTTTATTAAAATGACAAAACATTTTGGGTGCCCAATCACACCCTAATCAAAGATTGGTGA
* * *
8507309 TGATTCCTCAAACCATGTTTTATTTT-ATTTTTTAAAA-GAAAACCTAAATTAATCGAGACGAGA
130 CGATTCCTCAAA--ATGTTTTATTTTGA-TTTTTAAAAGGAAAACCCAAATTAATCGAGACAAGA
8507372 TTTTTTT
192 TTTTTTT
8507379 AAAATCACAC
Statistics
Matches: 181, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
209 74 0.41
210 32 0.18
211 20 0.11
213 1 0.01
214 54 0.30
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (211 bp):
CGTAATCGACTCCCAAACTCAATTTTTGGAACGCATACCTTAAAATGTTATTTTAATAATTAAAT
TAAATTTTATTAAAATGACAAAACATTTTGGGTGCCCAATCACACCCTAATCAAAGATTGGTGAC
GATTCCTCAAAATGTTTTATTTTGATTTTTAAAAGGAAAACCCAAATTAATCGAGACAAGATTTT
TTTTTAATTTCCCACA
Found at i:8507664 original size:21 final size:21
Alignment explanation
Indices: 8507640--8507680 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8507630 TCTCTTCATC
8507640 TTCATCTTCATCTTCTTCCTT
1 TTCATCTTCATCTTCTTCCTT
* * *
8507661 TTCATTTTCCTTTTCTTCCT
1 TTCATCTTCATCTTCTTCCT
8507681 CTTTTCTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61
Consensus pattern (21 bp):
TTCATCTTCATCTTCTTCCTT
Found at i:8508204 original size:20 final size:20
Alignment explanation
Indices: 8508181--8508227 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
8508171 TATCCATATT
8508181 GTTCATACAATATCGATACC
1 GTTCATACAATATCGATACC
* *
8508201 GTTCATACAATATTGATACT
1 GTTCATACAATATCGATACC
8508221 GTTCATA
1 GTTCATA
8508228 TTAATGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
GTTCATACAATATCGATACC
Found at i:8508311 original size:20 final size:19
Alignment explanation
Indices: 8508263--8508311 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
8508253 CAAGGGTAGT
*
8508263 ATCGATATCGATATTGTTC
1 ATCGATATCAATATTGTTC
8508282 AT-GTAATATCAATATTGTTC
1 ATCG--ATATCAATATTGTTC
8508302 ATCGAGTATC
1 ATCGA-TATC
8508312 GATACTCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 1 0.04
19 3 0.12
20 20 0.80
21 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (19 bp):
ATCGATATCAATATTGTTC
Found at i:8509586 original size:9 final size:8
Alignment explanation
Indices: 8509540--8509659 Score: 83
Period size: 9 Copynumber: 14.9 Consensus size: 8
8509530 ATACGTATAT
8509540 TTTTA-TA
1 TTTTATTA
*
8509547 TTTT-TCA
1 TTTTATTA
8509554 TTTTATT-
1 TTTTATTA
* *
8509561 CTTTGTT-
1 TTTTATTA
*
8509568 TTTTACTA
1 TTTTATTA
8509576 TTTTATTTA
1 TTTTA-TTA
8509585 TTATTATTA
1 TT-TTATTA
8509594 TTATTATTA
1 TT-TTATTA
8509603 TATCTTA-T-
1 T-T-TTATTA
8509611 TTTTATTA
1 TTTTATTA
8509619 TTTTATTA
1 TTTTATTA
8509627 TTTTATT-
1 TTTTATTA
8509634 TCTTTATTA
1 T-TTTATTA
8509643 TTATTATTA
1 TT-TTATTA
8509652 TTATTATT
1 TT-TTATT
8509660 TTCCCTCTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 20
0.76 0.07 0.16
Matches are distributed among these distances:
6 3 0.03
7 21 0.23
8 29 0.31
9 33 0.35
10 7 0.08
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (8 bp):
TTTTATTA
Found at i:8509590 original size:3 final size:3
Alignment explanation
Indices: 8509582--8509659 Score: 92
Period size: 3 Copynumber: 26.7 Consensus size: 3
8509572 ACTATTTTAT
* *
8509582 TTA TTA TTA TTA TTA TTA TTA TATC TTA TTT TTA TTA TT- TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
8509627 TT- TTA TT- TCT- TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
8509660 TTCCCTCTAA
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
2 6 0.09
3 58 0.88
4 2 0.03
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:8509704 original size:25 final size:26
Alignment explanation
Indices: 8509671--8509719 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
8509661 TCCCTCTAAT
*
8509671 ATTTAATTA-TATATATTTATATATCC
1 ATTTAATTATTAT-TATATATATATCC
8509697 ATTT-ATTATTATTATATATATAT
1 ATTTAATTATTATTATATATATAT
8509720 TTCTTCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
ATTTAATTATTATTATATATATATCC
Found at i:8509912 original size:11 final size:11
Alignment explanation
Indices: 8509896--8509924 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
8509886 CTTATTTTGC
8509896 TTATTTTATTT
1 TTATTTTATTT
8509907 TTATTTTATTT
1 TTATTTTATTT
8509918 TTATTTT
1 TTATTTT
8509925 TTATTAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:8510781 original size:13 final size:13
Alignment explanation
Indices: 8510765--8510794 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8510755 AAGGCTCTAT
8510765 ACCCAAGCTCTGA
1 ACCCAAGCTCTGA
*
8510778 ACCCGAGCTCTGA
1 ACCCAAGCTCTGA
8510791 ACCC
1 ACCC
8510795 TATTTAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.43, G:0.17, T:0.13
Consensus pattern (13 bp):
ACCCAAGCTCTGA
Found at i:8514367 original size:95 final size:94
Alignment explanation
Indices: 8514194--8514389 Score: 275
Period size: 95 Copynumber: 2.1 Consensus size: 94
8514184 TATAATATTA
* ** * * * *
8514194 TATATATACAATAAAGCTTGAGTTATCCCTCTAGAGCAATTGGTTAAACGCTCCGGCTTTATGGC
1 TATATATACAAAAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTATGGA
* *
8514259 TAATATTCGGCTAACCTGATAAAGGTGAT
66 TAAGATTCAGCTAACCTGATAAAGGTGAT
*
8514288 TATACTATACAAAAAAGCTTGAACTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTATGG
1 TATA-TATACAAAAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTATGG
*
8514353 ATAAGATTCAGCTAACCTGATAAAGGTGTT
65 ATAAGATTCAGCTAACCTGATAAAGGTGAT
*
8514383 TACATAT
1 TATATAT
8514390 TGAGCTGTCC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 7 0.08
95 82 0.92
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (94 bp):
TATATATACAAAAAAGCTTGAACTATCCCTCTAAAGCAATTGGTTAAACGCCCCGACTTTATGGA
TAAGATTCAGCTAACCTGATAAAGGTGAT
Found at i:8516260 original size:251 final size:252
Alignment explanation
Indices: 8515816--8516435 Score: 893
Period size: 251 Copynumber: 2.5 Consensus size: 252
8515806 AAGGGGCTTC
* ** * *
8515816 ACAGTTTCAGAGCCAATTTTAACTTCACGGTGGAGGATATTGGACTTGAAACAATACAATTTACT
1 ACAGTTTCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACTCGAAACAATACAACTTACT
* * * *
8515881 TGGATTTCAACTTCACGACGAAGGATATCCAATCCCAGGCTCAACTTCATGACGAATGGGCCACT
66 TGGATTTCAACTTCACGACGAAGGATATCCAATTCCAGGCTCAACTTCACGACGAAGGGGCCACC
* *
8515946 CGCAGTTTCAACTTCACAACGAAGGGAATCGTGCACACAAGCAGCATCCCTCTCTAAATTGGATT
131 CGCAGTTTCAACTTCACAACGAAGGGAATCGTGCACACAAGCAGAATCCATCTCTAAATTGGATT
* * *
8516011 TCAACTTTACGACGAAGGATATTCAACTTAAAGAAGGAGTGT-TGTCAATAAACTTA
196 TCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAGTGTCTGTCAATAAACTTA
*
8516067 ACAGTTTCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACTCGAAATAATACAACTTACT
1 ACAGTTTCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACTCGAAACAATACAACTTACT
*
8516132 TGGATTTCAACTTCACGACGAAGGATATCTAATTCCAGGCTCAACTTCACGACGAAGGGGCCACC
66 TGGATTTCAACTTCACGACGAAGGATATCCAATTCCAGGCTCAACTTCACGACGAAGGGGCCACC
* ** * **
8516197 CGCGGTTTCAACTTCATGACGAAGGGAATCGTGCACACAAGTAGAATCCATCTCTCGATTGGATT
131 CGCAGTTTCAACTTCACAACGAAGGGAATCGTGCACACAAGCAGAATCCATCTCTAAATTGGATT
* *
8516262 TCAACTTCATGACGAAGGATATCCAACTCAAAGAAGGAGTGTCTGTCAATAAACTTT
196 TCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAGTGTCTGTCAATAAACTTA
* * * * * *
8516319 CCAGTTTCAGAGTCAATTTCAACTTCAC-AGCGAAGGATATTGGCCTCGGAACAACACAACTTAC
1 ACAGTTTCAGAGCCAATTTCAACTTCACGA-CGGAGGATATTGGACTCGAAACAATACAACTTAC
** * *
8516383 AACGGATTTCAAATTCAAGACGAAGGATATCCAATTCCCAGGCTCAACTTCAC
65 -TTGGATTTCAACTTCACGACGAAGGATATCCAATT-CCAGGCTCAACTTCAC
8516436 AAACAGGTTG
Statistics
Matches: 329, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
251 215 0.65
252 68 0.21
253 30 0.09
254 16 0.05
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (252 bp):
ACAGTTTCAGAGCCAATTTCAACTTCACGACGGAGGATATTGGACTCGAAACAATACAACTTACT
TGGATTTCAACTTCACGACGAAGGATATCCAATTCCAGGCTCAACTTCACGACGAAGGGGCCACC
CGCAGTTTCAACTTCACAACGAAGGGAATCGTGCACACAAGCAGAATCCATCTCTAAATTGGATT
TCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGAGTGTCTGTCAATAAACTTA
Found at i:8517984 original size:15 final size:15
Alignment explanation
Indices: 8517964--8518006 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
8517954 CATTTTATTC
8517964 TTTATTTTTTACTAT
1 TTTATTTTTTACTAT
* *
8517979 TTTATTTATTATTAT
1 TTTATTTTTTACTAT
8517994 TATTATTATTTTA
1 T-TTATT-TTTTA
8518007 TTTCTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 14 0.61
16 5 0.22
17 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTATTTTTTACTAT
Found at i:8517992 original size:3 final size:3
Alignment explanation
Indices: 8517984--8518037 Score: 78
Period size: 3 Copynumber: 18.7 Consensus size: 3
8517974 ACTATTTTAT
8517984 TTA TTA TTA TTA TTA TTA TT- TTA TT- TCT- TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
8518027 TTA TTA TTA TT
1 TTA TTA TTA TT
8518038 TTCACTCTAA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.08
3 44 0.92
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Done.