Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 54 of 78
Found at i:10696114 original size:28 final size:27
Alignment explanation
Indices: 10696036--10696114 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 27
10696026 ACATGAGAAG
10696036 AAAGAAAGAAAGGAAGAAG-A-ATAAAGA
1 AAAG-AAG-AAGGAAGAAGAAGATAAAGA
*
10696063 AAAGAAGAAGGAAGAA-AGGAATAAGAGA
1 AAAGAAGAAGGAAGAAGAAG-ATAA-AGA
*
10696091 AAAGAGGAAGGAAGAAGAAGATAA
1 AAAGAAGAAGGAAGAAGAAGATAA
10696115 TAAAATAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
25 9 0.20
26 3 0.07
27 8 0.18
28 22 0.50
29 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.04
Consensus pattern (27 bp):
AAAGAAGAAGGAAGAAGAAGATAAAGA
Found at i:10696356 original size:18 final size:19
Alignment explanation
Indices: 10696333--10696377 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
10696323 ACTATGTTGT
10696333 TATTATTATTT-A-ATAAAA
1 TATTATTATTTGAGA-AAAA
10696351 TATTATTATTTGAGAAAAA
1 TATTATTATTTGAGAAAAA
10696370 TATTATTA
1 TATTATTA
10696378 GTAAATGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.44
19 13 0.52
20 1 0.04
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (19 bp):
TATTATTATTTGAGAAAAA
Found at i:10697414 original size:4 final size:4
Alignment explanation
Indices: 10697407--10697437 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
10697397 ATTTAAATAA
10697407 ATTT ATTT ATTT ATTAT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATT-T ATTT ATTT ATTT AT
10697438 AATTTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:10697428 original size:13 final size:13
Alignment explanation
Indices: 10697410--10697434 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10697400 TAAATAAATT
10697410 TATTTATTTATTA
1 TATTTATTTATTA
10697423 TATTTATTTATT
1 TATTTATTTATT
10697435 TATAATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTATTTATTA
Found at i:10698253 original size:21 final size:21
Alignment explanation
Indices: 10698229--10698269 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10698219 TCCAGGAAGG
10698229 ATGGAAGAGCAAAGTGGTGGA
1 ATGGAAGAGCAAAGTGGTGGA
* *
10698250 ATGGGAGAGCATAGTGGTGG
1 ATGGAAGAGCAAAGTGGTGG
10698270 GCATATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.46, T:0.17
Consensus pattern (21 bp):
ATGGAAGAGCAAAGTGGTGGA
Found at i:10698504 original size:18 final size:18
Alignment explanation
Indices: 10698483--10698520 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
10698473 AAATTAAATA
10698483 TTTAAATTATATTAGTAT
1 TTTAAATTATATTAGTAT
10698501 TTTAAATTATATTAGTAT
1 TTTAAATTATATTAGTAT
10698519 TT
1 TT
10698521 ATAGTGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TTTAAATTATATTAGTAT
Found at i:10702103 original size:18 final size:17
Alignment explanation
Indices: 10702061--10702116 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
10702051 ATTATACAGT
* *
10702061 TAAAAATAATATTAACA
1 TAAAAATAATATAAAAA
*
10702078 TAACAATAATCATAAAAA
1 TAAAAATAAT-ATAAAAA
*
10702096 TAAAAATATTTATAAAAA
1 TAAAAATA-ATATAAAAA
10702114 TAA
1 TAA
10702117 TATTAACATA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.28
18 22 0.69
19 1 0.03
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAATAATATAAAAA
Found at i:10702241 original size:18 final size:18
Alignment explanation
Indices: 10702218--10702252 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10702208 TGACTTTAAC
10702218 TTTC-TTCTCTTATTCTTG
1 TTTCTTTCTCTT-TTCTTG
10702236 TTTCTTTCTCTTTTCTT
1 TTTCTTTCTCTTTTCTT
10702253 TTCTTCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.03, C:0.23, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTCTTTCTCTTTTCTTG
Found at i:10702281 original size:15 final size:15
Alignment explanation
Indices: 10702217--10702309 Score: 68
Period size: 15 Copynumber: 6.1 Consensus size: 15
10702207 CTGACTTTAA
* *
10702217 CTTTCTTCTCTTATT
1 CTTTTTTCTCTTCTT
*
10702232 CTTGTTTCT-TTC-T
1 CTTTTTTCTCTTCTT
*
10702245 CTTTTCTTTTCTTCATT
1 CTTTT-TTCTCTTC-TT
10702262 CCTTTTTTCTCTTCTT
1 -CTTTTTTCTCTTCTT
*
10702278 CTTTTCTTC-CTTCTC
1 CTTTT-TTCTCTTCTT
10702293 CTATTTTTCT-TTCTT
1 CT-TTTTTCTCTTCTT
10702308 CT
1 CT
10702310 CCCCGGTGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
13 5 0.08
14 5 0.08
15 31 0.50
16 8 0.13
17 8 0.13
18 5 0.08
ACGTcount: A:0.03, C:0.28, G:0.01, T:0.68
Consensus pattern (15 bp):
CTTTTTTCTCTTCTT
Found at i:10713178 original size:60 final size:59
Alignment explanation
Indices: 10713065--10713225 Score: 162
Period size: 60 Copynumber: 2.7 Consensus size: 59
10713055 GATGAATTTG
* * * * *
10713065 GGGATAAAATTGGAATATTCAAAAGTTTAGGGACTAATATAGAAAGAGGGTCATAGTTT
1 GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAGAAAGAGAGTCATAGTTT
* * * * * *
10713124 AGGGATGAAATTAGAATGTTCAAAAGTTTATGGACTAATTTCGGAGGAGAGTCATTGTTT
1 -GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAGAAAGAGAGTCATAGTTT
* * *
10713184 GGATATGAAATTAAAATATTCCAAAA-TTTAAGGACCAATTTA
1 GG-GATGAAATTAGAATATT-CAAAAGTTTAAGGACTAATTTA
10713226 AAATGTTAGT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
59 2 0.02
60 76 0.92
61 5 0.06
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (59 bp):
GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAGAAAGAGAGTCATAGTTT
Found at i:10714035 original size:26 final size:27
Alignment explanation
Indices: 10714004--10714071 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 27
10713994 TTTAGTTTAT
10714004 ATTTTTTAAAATTAG-GATCTAACT-AA
1 ATTTTTTAAAATTAGAGATCTAA-TGAA
* *
10714030 ATTTTTTGAAATTGAGAGATTTAATGAA
1 ATTTTTTAAAATT-AGAGATCTAATGAA
*
10714058 ATTTTTAAAAATTA
1 ATTTTTTAAAATTA
10714072 TGTTAGGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 12 0.34
27 4 0.11
28 19 0.54
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (27 bp):
ATTTTTTAAAATTAGAGATCTAATGAA
Found at i:10714980 original size:17 final size:16
Alignment explanation
Indices: 10714916--10714980 Score: 51
Period size: 18 Copynumber: 3.8 Consensus size: 16
10714906 ATAATTTTAA
10714916 TTTTTAATATTTTATTAT
1 TTTTTAAT-TTTTATT-T
* *
10714934 TTTATAACTTCTTATATT
1 TTTTTAA-TTTTTAT-TT
10714952 TTTTTAGA-TTTTATTT
1 TTTTTA-ATTTTTATTT
10714968 TTTTTAACTTTTT
1 TTTTTAA-TTTTT
10714981 TATAATAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
15 1 0.03
16 8 0.21
17 9 0.24
18 17 0.45
19 3 0.08
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTTAATTTTTATTT
Found at i:10715475 original size:2 final size:2
Alignment explanation
Indices: 10715463--10715492 Score: 51
Period size: 2 Copynumber: 14.5 Consensus size: 2
10715453 GTTTTCTGAG
10715463 TA TA GTA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T
10715493 TGATATTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 25 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10716958 original size:140 final size:139
Alignment explanation
Indices: 10716628--10717062 Score: 606
Period size: 139 Copynumber: 3.1 Consensus size: 139
10716618 TATCCTAAAA
* *
10716628 AATTTAAACCAATTACTTGATTCGAATAATTAAAATGGAACCTCGAGCAAAAGCGA-GAACCAAA
1 AATTTTAACCAATTATTTGATTCGAATAATTAAAATGGAACCTCGAGCAAAAGCGATG-ACCAAA
* * * * * * *
10716692 TTAATAATTCCCCTAATTTTAAGGACTAGGTTTGAAATTAAGCCTAAAATGGAGGTTTTAATTGT
65 TTAAAAATTTCCCTAATTTTAAGGACTAAGTTTGAAAATAAGCCTAAAATAGAGGCTCTAATTGT
*
10716757 TTACCTAGTC
130 TAACCTAGTC
* * * *
10716767 AATTTTAACCAATTATTTTATTCAAATAGTTAAAATGGAACCTCGAGCAAAAACGATGACCAAAT
1 AATTTTAACCAATTATTTGATTCGAATAATTAAAATGGAACCTCGAGCAAAAGCGATGACCAAAT
10716832 TAAAAATTTCCCTAATTTTAAGGACTAAGTTTGAAAATAAGCCTAAAATAGAGGCTCTAATTTGT
66 TAAAAATTTCCCTAATTTTAAGGACTAAGTTTGAAAATAAGCCTAAAATAGAGGCTCTAA-TTGT
10716897 TAACCTAGTC
130 TAACCTAGTC
* * * * *
10716907 AATTTTAACCAATTATTTGATTTGAATAATTAAAATGGAACCTCCAACAAAAGCAATGATCAAAT
1 AATTTTAACCAATTATTTGATTCGAATAATTAAAATGGAACCTCGAGCAAAAGCGATGACCAAAT
* *
10716972 TAAAAATTT-CCTAATTTTAAGGACTATGTTT-AAAATTAAGCCTAAAATAAAGGCTCTAATTGT
66 TAAAAATTTCCCTAATTTTAAGGACTAAGTTTGAAAA-TAAGCCTAAAATAGAGGCTCTAATTGT
*
10717035 TAACCTATTC
130 TAACCTAGTC
* *
10717045 AACTTTAATCAATTATTT
1 AATTTTAACCAATTATTT
10717063 AATTATTCAT
Statistics
Matches: 265, Mismatches: 28, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
138 33 0.12
139 153 0.58
140 79 0.30
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (139 bp):
AATTTTAACCAATTATTTGATTCGAATAATTAAAATGGAACCTCGAGCAAAAGCGATGACCAAAT
TAAAAATTTCCCTAATTTTAAGGACTAAGTTTGAAAATAAGCCTAAAATAGAGGCTCTAATTGTT
AACCTAGTC
Found at i:10717436 original size:13 final size:13
Alignment explanation
Indices: 10717388--10717440 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 13
10717378 TTTAAGGTAG
10717388 AAATTAAAATAACA
1 AAATT-AAATAACA
*
10717402 AGAATTAAATGGTAAAA
1 A-AATTAAA---TAACA
10717419 AAATTAAATAACA
1 AAATTAAATAACA
10717432 AAATTAAAT
1 AAATTAAAT
10717441 CGATTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
13 13 0.39
14 4 0.12
15 4 0.12
16 7 0.21
17 5 0.15
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.25
Consensus pattern (13 bp):
AAATTAAATAACA
Found at i:10717450 original size:30 final size:31
Alignment explanation
Indices: 10717388--10717452 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
10717378 TTTAAGGTAG
*
10717388 AAATTAAAATAACAAGAATTAAATGGTAAAA
1 AAATTAAAATAACAAGAATTAAATGATAAAA
10717419 AAATT-AAATAACAA-AATTAAATCGATTAAAA
1 AAATTAAAATAACAAGAATTAAAT-GA-TAAAA
10717450 AAA
1 AAA
10717453 ATTACGAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 8 0.26
30 10 0.32
31 13 0.42
ACGTcount: A:0.66, C:0.05, G:0.06, T:0.23
Consensus pattern (31 bp):
AAATTAAAATAACAAGAATTAAATGATAAAA
Found at i:10720780 original size:16 final size:17
Alignment explanation
Indices: 10720760--10720796 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
10720750 GTGCAAGATG
10720760 ATGGTTGTT-GCAGGGA
1 ATGGTTGTTGGCAGGGA
*
10720776 GTGG-TGTTGGCAGGGA
1 ATGGTTGTTGGCAGGGA
10720792 ATGGT
1 ATGGT
10720797 GGAACTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 3
0.77 0.09 0.14
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.16, C:0.05, G:0.49, T:0.30
Consensus pattern (17 bp):
ATGGTTGTTGGCAGGGA
Found at i:10721061 original size:17 final size:16
Alignment explanation
Indices: 10721033--10721064 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10721023 GCCTGTAAGA
10721033 AAATAAAATAATAATT
1 AAATAAAATAATAATT
10721049 AAATAATAATAATAAT
1 AAATAA-AATAATAAT
10721065 AATATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAAATAATAATT
Found at i:10722383 original size:54 final size:54
Alignment explanation
Indices: 10722313--10722485 Score: 163
Period size: 54 Copynumber: 3.1 Consensus size: 54
10722303 TAAATTTTGT
*
10722313 TTCTTAAAAATATTCATTTACAGTTATCAAGAAACCCCT-AAAATTAGGCTTAGC
1 TTCTTTAAAA-ATTCATTTACAGTTATCAAGAAACCCCTAAAAATTAGGCTTAGC
* *** * *
10722367 TTCTTTCAAAAATTCATTTAAAAACATCACGAAACCCCTAAAAATCAGGCTTAG-
1 TTCTTT-AAAAATTCATTTACAGTTATCAAGAAACCCCTAAAAATTAGGCTTAGC
* * *
10722421 TT-TCTAAAAATCTTTCATTTTCAGTTGTCATCAAGGAACCCCTAAAAATTAGGCTTAGC
1 TTCTTTAAAAA---TTCATTTACAG-T-T-ATCAAGAAACCCCTAAAAATTAGGCTTAGC
10722480 TTCTTT
1 TTCTTT
10722486 TAGAAATTAT
Statistics
Matches: 92, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
52 5 0.05
53 2 0.02
54 30 0.33
55 25 0.27
58 26 0.28
59 2 0.02
60 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (54 bp):
TTCTTTAAAAATTCATTTACAGTTATCAAGAAACCCCTAAAAATTAGGCTTAGC
Found at i:10722544 original size:116 final size:112
Alignment explanation
Indices: 10722338--10722546 Score: 276
Period size: 116 Copynumber: 1.8 Consensus size: 112
10722328 ATTTACAGTT
*
10722338 ATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTCAAAAATTCATTTAAAAACATCACGAAACC
1 ATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTCAAAAATTCATTTAAAAACATCAAGAAACC
* *
10722403 CCTAAAAATCAGGCTTAGTTTCTAAAAATCTTTCATTTTCAGTTGTC
66 CATAAAAATCAGGCTTAATTTCTAAAAATCTTTCATTTTCAGTTGTC
* * * * *
10722450 ATCAAGGAACCCCTAAAAATTAGGCTTAGCTTCTTTTAGAAATT-ATTTGGAGATAATCATCAAT
1 ATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTCAAAAATTCATTT--A-A-AAACATCAAG
* *
10722514 ATACCCATGAAAATCAGGCTTAATTTCTAAAAA
61 AAACCCATAAAAATCAGGCTTAATTTCTAAAAA
10722547 CTCATTTGAA
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
112 17 0.21
113 27 0.33
114 1 0.01
115 1 0.01
116 36 0.44
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.32
Consensus pattern (112 bp):
ATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTCAAAAATTCATTTAAAAACATCAAGAAACC
CATAAAAATCAGGCTTAATTTCTAAAAATCTTTCATTTTCAGTTGTC
Found at i:10722552 original size:113 final size:111
Alignment explanation
Indices: 10722312--10722553 Score: 271
Period size: 116 Copynumber: 2.2 Consensus size: 111
10722302 GTAAATTTTG
* *
10722312 TTTCTTAAAAATATTCATTTACAG-T-T-ATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTC
1 TTTC-TAAAAATCTTCATTTTCAGTTGTCATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTC
* * *
10722374 AAAAATTCATTTAAAAACATCACGAAACCCCTAAAAATCAGGCTTAG
65 AAAAATTCATTTAAAAACATCAAGAAACCCATAAAAATCAGGCTTAA
*
10722421 TTTCTAAAAATCTTTCATTTTCAGTTGTCATCAAGGAACCCCTAAAAATTAGGCTTAGCTTCTTT
1 TTTCTAAAAATC-TTCATTTTCAGTTGTCATCAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTT
* * * * * *
10722486 TAGAAATT-ATTTGGAGATAATCATCAATATACCCATGAAAATCAGGCTTAA
64 CAAAAATTCATTT--A-A-AAACATCAAGAAACCCATAAAAATCAGGCTTAA
10722537 TTTCTAAAAA-C-TCATTT
1 TTTCTAAAAATCTTCATTT
10722554 GAAAACATCC
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
108 7 0.06
109 14 0.12
110 1 0.01
111 1 0.01
112 17 0.15
113 33 0.29
114 1 0.01
115 2 0.02
116 36 0.32
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.34
Consensus pattern (111 bp):
TTTCTAAAAATCTTCATTTTCAGTTGTCATCAAGAAACCCCTAAAATTAGGCTTAGCTTCTTTCA
AAAATTCATTTAAAAACATCAAGAAACCCATAAAAATCAGGCTTAA
Found at i:10722701 original size:22 final size:22
Alignment explanation
Indices: 10722645--10722705 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 22
10722635 ATTTAAGCAC
*
10722645 CATGCTCGAAAGACTTACTGAT
1 CATGCTCGAAAGACTTACTCAT
* * *
10722667 --GGTTCGAAGGACTTACTCAT
1 CATGCTCGAAAGACTTACTCAT
10722687 CATGCTCGAAAGACTTACT
1 CATGCTCGAAAGACTTACT
10722706 GATGGCCCAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 16 0.53
22 14 0.47
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (22 bp):
CATGCTCGAAAGACTTACTCAT
Found at i:10722719 original size:42 final size:41
Alignment explanation
Indices: 10722584--10722724 Score: 131
Period size: 42 Copynumber: 3.4 Consensus size: 41
10722574 TCTTATGGAG
* * * *
10722584 GGCCCAAATGACTTATCATCTTGTTCAAAAGACTTA-TAGAT
1 GGCCCAAAGGACTTATCATCATGCTCGAAAGACTTACT-GAT
* ** * * *
10722625 GACCTGAAGGATTTAAGCACCATGCTCGAAAGACTTACTGAT
1 GGCCCAAAGGACTT-ATCATCATGCTCGAAAGACTTACTGAT
** *
10722667 GGTTCGAAGGACTTACTCATCATGCTCGAAAGACTTACTGAT
1 GGCCCAAAGGACTTA-TCATCATGCTCGAAAGACTTACTGAT
10722709 GGCCCAAAGGACTTAT
1 GGCCCAAAGGACTTAT
10722725 GTTGATTTAA
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
41 11 0.14
42 65 0.84
43 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (41 bp):
GGCCCAAAGGACTTATCATCATGCTCGAAAGACTTACTGAT
Found at i:10723009 original size:145 final size:145
Alignment explanation
Indices: 10722706--10723013 Score: 526
Period size: 145 Copynumber: 2.1 Consensus size: 145
10722696 AAGACTTACT
* * * *
10722706 GATGGCCCAAAGGACTTATGTTGATTTAAAGTGTTGTGAATCGAGCAATAGGAAATGTTAATCCC
1 GATGGCCCAAAGGACTTAAGCTGATTCAAAGTGTTGTGAATCGAGCAATAGGAAATGTTAACCCC
* *
10722771 TCTGGTGGGGCGTTGTTGATTCGAAGTGTTGTGAATTGAGCAAAGGAAATGTTGAAAACATCCTG
66 TCTGGTGGGGCGTTGTTGATTCGAAGTGTTGTGAATCGAACAAAGGAAATGTTGAAAACATCCTG
10722836 CCCGAAGGTCTTATG
131 CCCGAAGGTCTTATG
* **
10722851 GATGGTCTGAAGGACTTAAGCTGATTCAAAGTGTTGTGAATCGAGCAATAGGAAATGTTAACCCC
1 GATGGCCCAAAGGACTTAAGCTGATTCAAAGTGTTGTGAATCGAGCAATAGGAAATGTTAACCCC
*
10722916 TCTGGTGGGGCGTTGTTGATTCGAAGTGTTGTGAATCGAACAAAGGAAATGTTGAAAACATCTTG
66 TCTGGTGGGGCGTTGTTGATTCGAAGTGTTGTGAATCGAACAAAGGAAATGTTGAAAACATCCTG
10722981 CCCGAAGGTCTTATG
131 CCCGAAGGTCTTATG
10722996 GATGGCCCAAAGGACTTA
1 GATGGCCCAAAGGACTTA
10723014 TCATCTTGCT
Statistics
Matches: 150, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
145 150 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (145 bp):
GATGGCCCAAAGGACTTAAGCTGATTCAAAGTGTTGTGAATCGAGCAATAGGAAATGTTAACCCC
TCTGGTGGGGCGTTGTTGATTCGAAGTGTTGTGAATCGAACAAAGGAAATGTTGAAAACATCCTG
CCCGAAGGTCTTATG
Found at i:10723103 original size:42 final size:41
Alignment explanation
Indices: 10722990--10723103 Score: 104
Period size: 42 Copynumber: 2.7 Consensus size: 41
10722980 GCCCGAAGGT
* ** *
10722990 CTTATGGATGGCCCAAAGGACTTATCATCTTGCTTAAAAGA
1 CTTATAGATGGCCCAAAGGACTTATCATCACGCTCAAAAGA
** * * * *
10723031 CTTATAGATGAACCGAAGGATTTAAGCATCACGCTCGAAAGA
1 CTTATAGATGGCCCAAAGGACTT-ATCATCACGCTCAAAAGA
10723073 CTTACT-GATGGCCCAAAGGACTTACTCATCA
1 CTTA-TAGATGGCCCAAAGGACTTA-TCATCA
10723104 AGAAACCCTT
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
41 19 0.35
42 35 0.64
43 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (41 bp):
CTTATAGATGGCCCAAAGGACTTATCATCACGCTCAAAAGA
Found at i:10723321 original size:53 final size:54
Alignment explanation
Indices: 10723140--10723388 Score: 231
Period size: 53 Copynumber: 4.6 Consensus size: 54
10723130 TTCTTAGTTG
* * * *
10723140 TCAAGGAACCCCTAAAAATTAGTCTTAGTTTCCTTTTAAAAACTCA-TTGAAAAACATCA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTT-C-TTT-CAAATTCATTTG-AAAA-A-CA
* **** *
10723199 TCAAGAAACCCCTAAAAATCAGGCTTAG-TT-AAAAAAACTCATTTG-AAAACA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTTTCAAATTCATTTGAAAAACA
* * * * *
10723250 TCAATAAATCCCTAAAAATTAGGCTTAATTTCTTTGAAATTCATTTGAAAAATA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTTTCAAATTCATTTGAAAAACA
* *
10723304 TTAAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTCAAATTCATTT-AAAAACA
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTTTCAAATTCATTTGAAAAACA
* *
10723356 TCGAGAAACCCCTGAAAATTAGGCTTAGTTTCT
1 TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCT
10723389 AAAAATCTTT
Statistics
Matches: 159, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
51 26 0.16
52 20 0.13
53 60 0.38
54 23 0.14
55 3 0.02
58 2 0.01
59 25 0.16
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (54 bp):
TCAAGAAACCCCTAAAAATTAGGCTTAGTTTCTTTCAAATTCATTTGAAAAACA
Found at i:10723442 original size:39 final size:39
Alignment explanation
Indices: 10723390--10723472 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 39
10723380 TTAGTTTCTA
* * * *
10723390 AAAATCTTTTGTTTCGAGTGAAACTATCTCAAGCGAGAT
1 AAAATCTTCTGTTTCAAGTGAAACAATCTCAAGCGAGAC
*
10723429 AAAATCTTCTGTTTCAAGTGAAACAATCTCAAGCGGGAC
1 AAAATCTTCTGTTTCAAGTGAAACAATCTCAAGCGAGAC
10723468 AAAAT
1 AAAAT
10723473 ATTTTGGTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (39 bp):
AAAATCTTCTGTTTCAAGTGAAACAATCTCAAGCGAGAC
Found at i:10723738 original size:66 final size:64
Alignment explanation
Indices: 10723587--10723746 Score: 205
Period size: 66 Copynumber: 2.5 Consensus size: 64
10723577 AGATACATTT
* *
10723587 TTTCAAGGGAAACTGTCTCCAGAGAGACAAAATTCGTCTCAAGGGAAACAATTTCAAAGATTGG
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTCTCAAGGGAAACAATTTCAAAGATTGG
* * * *
10723651 TTTTAAGAGAAACTGTCTCAAGAGAGACAGAATTTTGTTTCAAGGGAAAC-ATATTCAAAGATTT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACA-AAATTCGTCTCAAGGGAAACAAT-TTCAAAGA-TT
*
10723715 TG
63 GG
* *
10723717 TTTCAAGAGAAATTGTCTCAAGCGAGACAA
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAA
10723747 TATTTGTTCT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 28 0.34
65 26 0.31
66 29 0.35
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (64 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTCTCAAGGGAAACAATTTCAAAGATTGG
Found at i:10723753 original size:65 final size:63
Alignment explanation
Indices: 10723587--10723754 Score: 203
Period size: 65 Copynumber: 2.6 Consensus size: 63
10723577 AGATACATTT
* * * *
10723587 TTTCAAGGGAAACTGTCTCCAGAGAGACAAAATTCGTCTCAAGGGAAACAATTTCAAAGATTGG
1 TTTCAAGAGAAACTGTCTCAAGAGAGAC-AAATTTGTTTCAAGGGAAACAATTTCAAAGATTGG
*
10723651 TTTTAAGAGAAACTGTCTCAAGAGAGACAGAATTTTGTTTCAAGGGAAAC-ATATTCAAAGATTT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACA-AA-TTTGTTTCAAGGGAAACAAT-TTCAAAGA-TT
*
10723715 TG
62 GG
* *
10723717 TTTCAAGAGAAATTGTCTCAAGCGAGACAATATTTGTT
1 TTTCAAGAGAAACTGTCTCAAGAGAGACAA-ATTTGTT
10723755 CTTTAGAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
63 1 0.01
64 29 0.32
65 30 0.33
66 30 0.33
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (63 bp):
TTTCAAGAGAAACTGTCTCAAGAGAGACAAATTTGTTTCAAGGGAAACAATTTCAAAGATTGG
Found at i:10723995 original size:102 final size:101
Alignment explanation
Indices: 10723820--10724089 Score: 343
Period size: 102 Copynumber: 2.7 Consensus size: 101
10723810 GGGTGAATGT
* * *
10723820 CTCAAGTGAGACG-ATGCTTGTTTTGAGAG-AAATTGTCTCAAGTGAGACAAAATTTG-GTTTAA
1 CTCAAGTGAGACGAAT--TTGTTTTGAGAGAAAAATGTCTCAGGTGAGACAAAATTTGTTTTTAA
* *
10723882 GTAAAACAACTTTGAAATTTGTGCTCCGAAGGAAAATAC
64 G-AAAACAACTTTGAAATTTGTGCTCCAAAGAAAAATAC
10723921 CTCAAGTGAGACGAAATTTGTTTTGAGAGAAAAATGTCTCAGGTGAGACAAAATTTGTTTTTAAG
1 CTCAAGTGAGACG-AATTTGTTTTGAGAGAAAAATGTCTCAGGTGAGACAAAATTTGTTTTTAAG
* **
10723986 AAAACAACTTTGAAATTTGTGTTCCAAAGAAAAATGT
65 AAAACAACTTTGAAATTTGTGCTCCAAAGAAAAATAC
* * ** *
10724023 CTCAAGTGAGACG-ATTTTTTTTAAGAGAAATGTGTCTCAAGG-GAGATAAAATTTGTTTTTAAG
1 CTCAAGTGAGACGAATTTGTTTTGAGAGAAAAATGTCTC-AGGTGAGACAAAATTTGTTTTTAAG
10724086 AAAA
65 AAAA
10724090 ACAATGTCTC
Statistics
Matches: 151, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
100 45 0.30
101 28 0.19
102 70 0.46
103 8 0.05
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.31
Consensus pattern (101 bp):
CTCAAGTGAGACGAATTTGTTTTGAGAGAAAAATGTCTCAGGTGAGACAAAATTTGTTTTTAAGA
AAACAACTTTGAAATTTGTGCTCCAAAGAAAAATAC
Found at i:10724466 original size:16 final size:15
Alignment explanation
Indices: 10724438--10724481 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
10724428 TTCAAATTTC
10724438 ATGTGTTATGTATGT
1 ATGTGTTATGTATGT
10724453 ATGTGTTGATGTATGT
1 ATGTGTT-ATGTATGT
*
10724469 ATATG-TATGTATG
1 ATGTGTTATGTATG
10724482 AGGGGAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 7 0.26
15 8 0.30
16 12 0.44
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (15 bp):
ATGTGTTATGTATGT
Found at i:10729265 original size:15 final size:16
Alignment explanation
Indices: 10729245--10729279 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
10729235 CCAAATGATG
*
10729245 GGTGTT-GCAGGGAGT
1 GGTGTTGGCAGGGAAT
10729260 GGTGTTGGCAGGGAAT
1 GGTGTTGGCAGGGAAT
10729276 GGTG
1 GGTG
10729280 GAACTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.14, C:0.06, G:0.54, T:0.26
Consensus pattern (16 bp):
GGTGTTGGCAGGGAAT
Found at i:10729524 original size:3 final size:3
Alignment explanation
Indices: 10729497--10729570 Score: 100
Period size: 3 Copynumber: 25.7 Consensus size: 3
10729487 TAAAGCTTGC
* *
10729497 AAT AA- AAT AA- AAT AAT ACT TA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
10729542 ATT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10729571 ACGATACGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
2 5 0.08
3 57 0.92
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10731244 original size:3 final size:3
Alignment explanation
Indices: 10731236--10731285 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
10731226 ATATATTTGA
* * *
10731236 AAT AAT AAT AGT AAT AAT AAT ACT AAT AA- AAT AAT AA- AAA AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10731281 AAT AA
1 AAT AA
10731286 AAATGGTGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 6 0.15
3 33 0.85
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:10731282 original size:10 final size:12
Alignment explanation
Indices: 10731236--10731289 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 12
10731226 ATATATTTGA
* *
10731236 AATAATAATAGT
1 AATAAAAATAAT
* *
10731248 AATAATAATACT
1 AATAAAAATAAT
10731260 AAT-AAAATAAT
1 AATAAAAATAAT
10731271 AA-AAAAAT-AT
1 AATAAAAATAAT
10731281 AATAAAAAT
1 AATAAAAAT
10731290 GGTGATTGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
10 4 0.11
11 19 0.51
12 14 0.38
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:10731787 original size:27 final size:28
Alignment explanation
Indices: 10731724--10731787 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
10731714 TTTGGTGTCC
*
10731724 AATTTT-TTAAAATAGAGATTAATAAAT
1 AATTTTATTAAAATAGAGATTAATAAAG
** * *
10731751 AATTCAATTAAAATATA-ATTACTAAAG
1 AATTTTATTAAAATAGAGATTAATAAAG
10731778 AATTTTATTA
1 AATTTTATTA
10731788 CATAAATTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.41
Consensus pattern (28 bp):
AATTTTATTAAAATAGAGATTAATAAAG
Found at i:10731889 original size:24 final size:24
Alignment explanation
Indices: 10731840--10731890 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
10731830 GTTGATAAGA
* * *
10731840 AATTTCATAATATGAAATTATTTT
1 AATTTCATAATAAGAAATAATATT
10731864 AATTT-ATAATAAGAATATAATATT
1 AATTTCATAATAAGAA-ATAATATT
10731888 AAT
1 AAT
10731891 GCATATTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (24 bp):
AATTTCATAATAAGAAATAATATT
Found at i:10732261 original size:22 final size:22
Alignment explanation
Indices: 10732224--10732280 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
10732214 CTTGAGATTT
10732224 GTTTCTTAA-TTTTTAGTTATA
1 GTTTCTTAATTTTTTAGTTATA
10732245 GTTTCTTAATTTTTTAGTTATA
1 GTTTCTTAATTTTTTAGTTATA
10732267 GTTTCTTAATTTTT
1 GTTTCTTAATTTTT
10732281 AAACTTTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 9 0.26
22 26 0.74
ACGTcount: A:0.21, C:0.05, G:0.09, T:0.65
Consensus pattern (22 bp):
GTTTCTTAATTTTTTAGTTATA
Found at i:10732416 original size:37 final size:37
Alignment explanation
Indices: 10732374--10734137 Score: 2516
Period size: 37 Copynumber: 48.1 Consensus size: 37
10732364 TGACGGACCC
**
10732374 TTAGTATTTTAGTTAAAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* *
10732411 TTAGTATTTTAGTTATAGTTTCTTAATTTTATAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10732448 TTAGTATTTTAGTTATAGTTTCTTAATTTTTTAACTTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAAC-TT
* *
10732486 TTAGTATTAGTTAGTTTT-TTTTAACTTAATTTTAGT-A-TT
1 TTAGTATT--TTAGTTTTAGTTT--CTTAATTTT-TTAACTT
* * * *
10732525 TTA--ATTTTAATTTTAGTTTTAGTTTAGTTTTTTAATTT
1 TTAGTATTTTAGTTTTAG-TTT--CTTAATTTTTTAACTT
*
10732563 TTAACTTTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TT-A--GTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10732603 TTAGTATTTTAGTTTTAGTTTC--AATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10732638 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAA-TT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10732674 TTAG----TTA----AAGTTTC-TAA-TTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10732701 TTAGTA-TTTAGTTATAG-TTCTTAA---TTTAAC-T
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10732732 TTAGTATTTTAG-TATAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10732768 TTAGTATTTTATTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* * *
10732805 TTAGTATTTTAGTTATAGATTCTTAATTTTTTAATTTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAA-CTT
* *
10732843 TTAGTATTTTAGTTATAGTTTTTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10732880 TTAGTATTTTAGTTTTAGTTTCTTAA-TTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10732916 TTAGTATTTTAG-TTTAGTTTCTTAA-TTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* *
10732951 TTAGCA-TTTAGTTTTAGTTTCTT-ATTTTTTAA-GT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10732985 TTAGTA-TTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* * *
10733021 CTAGTATTTTAGTTATAGTTTCTTAA-TTTTTAATTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733057 TTAGTA-TTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733093 TTAGTATTTTAGTTATAGTTTCTTAATTTTTT-ACTTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAAC-TT
10733130 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* * *
10733167 TTAGTATTTTAGTTATAGTTTCTTAATTTTTAAATTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733204 TTAATATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733241 TTAGTATTTTAGTGTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* * *
10733278 TTAGTATTTTAGTTATAGTTTCTTCATTTTTTAATTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733315 TTAGTATTTTAGTTTTAGTTTCCTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* *
10733352 TTAGTATTTTAGTTATAGTTTCTTAATTTTTTAATTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733389 TTAGTATTTTAGTTATAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733426 TTAGTATTTTAGTTATAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733463 TTAGTATTTTAGTTGTT-GTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTT-TTAGTTTCTTAATTTTTTAACTT
* * *
10733500 TTAGTATTTTAGTTATGGTTTCTTAATTTTTTAATTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733537 TTAGTATTTTAGTTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAG-----TA-TTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733580 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTTAAATT
1 TTAGTATTTTAGTTTTAGTTTCTTAA-TTTTTTAACTT
*
10733618 TTAG--TTTTAGTTGT--TTTCTTAATTTTTTAAC-T
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
* * *
10733650 TT--TATTTTAGTTATGGTTTCTTAATTTTTTAATTTTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAA--CTT
*
10733687 ATTATTTTAGTTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 -TTA--GTA-TTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733728 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAAATT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733765 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733802 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733839 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733876 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733913 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10733950 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
*
10733987 TTAGTATTTTAGTTATAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10734024 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10734061 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10734098 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
1 TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
10734135 TTA
1 TTA
10734138 AGTTTGTAAT
Statistics
Matches: 1580, Mismatches: 82, Indels: 130
0.88 0.05 0.07
Matches are distributed among these distances:
26 7 0.00
27 9 0.01
28 6 0.00
30 3 0.00
31 12 0.01
32 33 0.02
33 11 0.01
34 58 0.04
35 121 0.08
36 88 0.06
37 1036 0.66
38 71 0.04
39 10 0.01
40 25 0.02
41 12 0.01
42 8 0.01
43 70 0.04
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (37 bp):
TTAGTATTTTAGTTTTAGTTTCTTAATTTTTTAACTT
Found at i:10732520 original size:25 final size:26
Alignment explanation
Indices: 10732492--10732557 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 26
10732482 CTTTTTAGTA
10732492 TTAGTTAGTTTTTTTTAA-CTTAATT
1 TTAGTTAGTTTTTTTTAATCTTAATT
* *
10732517 TTAG-TA-TTTTAATTTTAATTTTAGTT
1 TTAGTTAGTTTT--TTTTAATCTTAATT
10732543 TTAGTTTAGTTTTTT
1 TTAG-TTAGTTTTTT
10732558 AATTTTTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
23 4 0.12
24 2 0.06
25 10 0.30
26 9 0.27
27 2 0.06
28 2 0.06
29 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.67
Consensus pattern (26 bp):
TTAGTTAGTTTTTTTTAATCTTAATT
Found at i:10732526 original size:20 final size:20
Alignment explanation
Indices: 10732504--10732541 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10732494 AGTTAGTTTT
10732504 TTTTAA-CTTAATTTTAGTA
1 TTTTAATCTTAATTTTAGTA
*
10732523 TTTTAATTTTAATTTTAGT
1 TTTTAATCTTAATTTTAGT
10732542 TTTAGTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTAATCTTAATTTTAGTA
Found at i:10732539 original size:31 final size:30
Alignment explanation
Indices: 10732504--10732595 Score: 85
Period size: 31 Copynumber: 2.9 Consensus size: 30
10732494 AGTTAGTTTT
*
10732504 TTTTAACTTAATTTTAGTATTTTAATTTTAA
1 TTTTAATTTAATTTTAGT-TTTTAATTTTAA
* * *
10732535 TTTTAGTTTTAGTTTAGTTTTTTAATTTTTAA
1 TTTTAATTTAATTTTAG-TTTTTAA-TTTTAA
* * *
10732567 CTTTATTTTAGTTTTAGTTTCTTAATTTT
1 TTTTAATTTAATTTTAGTTT-TTAATTTT
10732596 TTAACTTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
31 26 0.53
32 23 0.47
ACGTcount: A:0.24, C:0.03, G:0.07, T:0.66
Consensus pattern (30 bp):
TTTTAATTTAATTTTAGTTTTTAATTTTAA
Found at i:10732558 original size:25 final size:26
Alignment explanation
Indices: 10732529--10732581 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
10732519 AGTATTTTAA
**
10732529 TTTTAA-TTTTAGTTTTAGTTTAGTT
1 TTTTAATTTTTAACTTTAGTTTAGTT
*
10732554 TTTTAATTTTTAACTTTATTTTAGTT
1 TTTTAATTTTTAACTTTAGTTTAGTT
10732580 TT
1 TT
10732582 AGTTTCTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.21, C:0.02, G:0.08, T:0.70
Consensus pattern (26 bp):
TTTTAATTTTTAACTTTAGTTTAGTT
Found at i:10732676 original size:28 final size:28
Alignment explanation
Indices: 10732643--10732797 Score: 95
Period size: 28 Copynumber: 5.2 Consensus size: 28
10732633 AACTTTTAGT
10732643 ATTTTAGTTTTAGTTTCTTAATTTTTTA
1 ATTTTAGTTTTAGTTTCTTAATTTTTTA
**
10732671 ATTTTAGTTAAAGTTTC-TAA-TTTTTA
1 ATTTTAGTTTTAGTTTCTTAATTTTTTA
10732697 ACTTTTAGTATTTAGTTATAGTTCTTAATTTAACTTTA
1 A-TTTTAGT-TTTAG---T--TTCTTAATTT---TTTA
*
10732735 GTATTTTAG-TATAGTTTCTTAATTTTTTA
1 --ATTTTAGTTTTAGTTTCTTAATTTTTTA
* *
10732764 ACTTTTAGTATTTTA-TTT-TTAGTTTCTTA
1 A-TTTTAG--TTTTAGTTTCTTAATTTTTTA
10732793 ATTTT
1 ATTTT
10732798 TTAACTTTTA
Statistics
Matches: 101, Mismatches: 8, Indels: 36
0.70 0.06 0.25
Matches are distributed among these distances:
26 7 0.07
27 11 0.11
28 28 0.28
29 14 0.14
30 3 0.03
31 4 0.04
32 10 0.10
33 3 0.03
34 4 0.04
35 2 0.02
37 4 0.04
38 4 0.04
39 6 0.06
40 1 0.01
ACGTcount: A:0.25, C:0.05, G:0.08, T:0.62
Consensus pattern (28 bp):
ATTTTAGTTTTAGTTTCTTAATTTTTTA
Found at i:10732909 original size:14 final size:13
Alignment explanation
Indices: 10732906--10733270 Score: 50
Period size: 14 Copynumber: 25.8 Consensus size: 13
10732896 AGTTTCTTAA
10732906 TTTTTAACTTTTAG
1 TTTTTAA-TTTTAG
*
10732920 TATTTT-AGTTTAG
1 T-TTTTAATTTTAG
*
10732933 TTTCTTAATTTTTAA
1 TTT-TTAA-TTTTAG
*
10732948 CTTTTAGCA-TTTAG
1 TTTTTA--ATTTTAG
* *
10732962 -TTTTAGTTTCTTAT
1 TTTTTA-ATT-TTAG
*
10732976 TTTTTAAGTTTAG
1 TTTTTAATTTTAG
* *
10732989 TATTTAGTTTTAG
1 TTTTTAATTTTAG
10733002 TTTCTTAA---T--
1 TTT-TTAATTTTAG
*
10733011 TTTTTAACTTCTAG
1 TTTTTAA-TTTTAG
* *
10733025 TATTTTAGTTATAG
1 T-TTTTAATTTTAG
*
10733039 TTTCTTAATTTTTAA
1 TTT-TTAA-TTTTAG
*
10733054 TTTTTAGTATTTAG
1 TTTTTAAT-TTTAG
* *
10733068 -TTTTAGTTTCTTAAT
1 TTTTTA-ATT-TT-AG
10733083 TTTTTAACTTTTAG
1 TTTTTAA-TTTTAG
* *
10733097 TATTTTAGTTATAG
1 T-TTTTAATTTTAG
*
10733111 TTTCTTAATTTTTTAC
1 TTT-TTAA--TTTTAG
10733127 TTTTTAGTATTTTAG
1 TTTTTA--ATTTTAG
* *
10733142 -TTTTAGTTTCTTAAT
1 TTTTTA-ATT-TT-AG
10733157 TTTTTAACTTTTAG
1 TTTTTAA-TTTTAG
* *
10733171 TATTTTAGTTATAG
1 T-TTTTAATTTTAG
*
10733185 TTTCTTAATTTTTAAA
1 TTT-TTAA-TTTT-AG
10733201 TTTTTAATATTTTAG
1 TTTTT-A-ATTTTAG
* *
10733216 -TTTTAGTTTCTTAAT
1 TTTTTA-ATT-TT-AG
10733231 TTTTTAACTTTTAG
1 TTTTTAA-TTTTAG
* *
10733245 TATTTTAGTGTTAG
1 T-TTTTAATTTTAG
10733259 TTTCTTAATTTT
1 TTT-TTAATTTT
10733271 TTAACTTTTA
Statistics
Matches: 251, Mismatches: 53, Indels: 94
0.63 0.13 0.24
Matches are distributed among these distances:
8 4 0.02
9 3 0.01
11 1 0.00
12 3 0.01
13 49 0.20
14 86 0.34
15 65 0.26
16 38 0.15
17 2 0.01
ACGTcount: A:0.23, C:0.05, G:0.08, T:0.64
Consensus pattern (13 bp):
TTTTTAATTTTAG
Found at i:10732918 original size:28 final size:29
Alignment explanation
Indices: 10732886--10733106 Score: 84
Period size: 35 Copynumber: 6.5 Consensus size: 29
10732876 ACTTTTAGTA
10732886 TTTTAG-TTTTAGTTTCTTAATTTTTAAC
1 TTTTAGTTTTTAGTTTCTTAATTTTTAAC
10732914 TTTTAGTATTTTAGTTTAGTTTCTTAATTTTTAAC
1 TTTTAG----TT--TTTAGTTTCTTAATTTTTAAC
* *
10732949 TTTTAGCATTTAGTTTTAGTTTCTTATTTTTTAAG
1 TTTTAG----T--TTTTAGTTTCTTAATTTTTAAC
*
10732984 TTTAGTATTTAGTTTTAGTTTCTTAATTTTTTAAC
1 TTT--TA-GT--TTTTAGTTTCTTAA-TTTTTAAC
* *
10733019 TTCTAGTATTTTAGTTATAGTTTCTTAATTTTTAAT
1 TT-T--TA-GTT--TT-TAGTTTCTTAATTTTTAAC
*
10733055 TTTTAGTATTTAGTTTTAGTTTCTTAATTTTTTAAC
1 TTTTAGTTTTTAG------TTTCTTAA-TTTTTAAC
10733091 TTTTAGTATTTTAGTT
1 TTTTAGT-TTTTAGTT
10733107 ATAGTTTCTT
Statistics
Matches: 157, Mismatches: 11, Indels: 47
0.73 0.05 0.22
Matches are distributed among these distances:
28 6 0.04
29 3 0.02
30 2 0.01
31 2 0.01
32 1 0.01
33 3 0.02
34 17 0.11
35 71 0.45
36 33 0.21
37 19 0.12
ACGTcount: A:0.22, C:0.05, G:0.09, T:0.63
Consensus pattern (29 bp):
TTTTAGTTTTTAGTTTCTTAATTTTTAAC
Found at i:10733102 original size:8 final size:7
Alignment explanation
Indices: 10732766--10734128 Score: 343
Period size: 8 Copynumber: 186.6 Consensus size: 7
10732756 ATTTTTTAAC
10732766 TTTTAGT
1 TTTTAGT
10732773 ATTTTA-T
1 -TTTTAGT
10732780 TTTTAGT
1 TTTTAGT
*
10732787 TTCTTAATT
1 TT-TT-AGT
**
10732796 TTTTAAC
1 TTTTAGT
10732803 TTTTAGT
1 TTTTAGT
10732810 ATTTTAG-
1 -TTTTAGT
*
10732817 TTATAGAT
1 TTTTAG-T
* *
10732825 TCTTAATT
1 T-TTTAGT
*
10732833 TTTTAATT
1 TTTT-AGT
10732841 TTTTAGT
1 TTTTAGT
10732848 ATTTTAG-
1 -TTTTAGT
*
10732855 TTATAGTT
1 TTTTAG-T
*
10732863 TTTTAATT
1 TTTT-AGT
**
10732871 TTTTAAC
1 TTTTAGT
10732878 TTTTAGT
1 TTTTAGT
10732885 ATTTTAG-
1 -TTTTAGT
10732892 TTTTAGT
1 TTTTAGT
*
10732899 TTCTTAAT
1 TT-TTAGT
**
10732907 TTTTAAC
1 TTTTAGT
10732914 TTTTAGT
1 TTTTAGT
10732921 ATTTTAG-
1 -TTTTAGT
10732928 -TTTAGT
1 TTTTAGT
*
10732934 TTCTTAAT
1 TT-TTAGT
**
10732942 TTTTAAC
1 TTTTAGT
*
10732949 TTTTAGC
1 TTTTAGT
*
10732956 ATTTAG-
1 TTTTAGT
10732962 TTTTAGT
1 TTTTAGT
*
10732969 TTCTTATT
1 TT-TTAGT
10732977 TTTTAAG-
1 TTTT-AGT
10732984 -TTTAGT
1 TTTTAGT
*
10732990 ATTTAG-
1 TTTTAGT
10732996 TTTTAGT
1 TTTTAGT
*
10733003 TTCTTAATT
1 TT-TT-AGT
**
10733012 TTTTAAC
1 TTTTAGT
*
10733019 TTCTAGT
1 TTTTAGT
10733026 ATTTTAG-
1 -TTTTAGT
*
10733033 TTATAGT
1 TTTTAGT
*
10733040 TTCTTAAT
1 TT-TTAGT
*
10733048 TTTTAAT
1 TTTTAGT
10733055 TTTTAGT
1 TTTTAGT
*
10733062 ATTTAG-
1 TTTTAGT
10733068 TTTTAGT
1 TTTTAGT
*
10733075 TTCTTAATT
1 TT-TT-AGT
**
10733084 TTTTAAC
1 TTTTAGT
10733091 TTTTAGT
1 TTTTAGT
10733098 ATTTTAG-
1 -TTTTAGT
*
10733105 TTATAGT
1 TTTTAGT
*
10733112 TTCTTAATT
1 TT-TT-AGT
*
10733121 TTTTACT
1 TTTTAGT
10733128 TTTTAGT
1 TTTTAGT
10733135 ATTTTAG-
1 -TTTTAGT
10733142 TTTTAGT
1 TTTTAGT
*
10733149 TTCTTAATT
1 TT-TT-AGT
**
10733158 TTTTAAC
1 TTTTAGT
10733165 TTTTAGT
1 TTTTAGT
10733172 ATTTTAG-
1 -TTTTAGT
*
10733179 TTATAGT
1 TTTTAGT
*
10733186 TTCTTAAT
1 TT-TTAGT
*
10733194 TTTTAAAT
1 TTTT-AGT
*
10733202 TTTTAAT
1 TTTTAGT
10733209 ATTTTAG-
1 -TTTTAGT
10733216 TTTTAGT
1 TTTTAGT
*
10733223 TTCTTAATT
1 TT-TT-AGT
**
10733232 TTTTAAC
1 TTTTAGT
10733239 TTTTAGT
1 TTTTAGT
10733246 ATTTTAG-
1 -TTTTAGT
*
10733253 TGTTAGT
1 TTTTAGT
*
10733260 TTCTTAATT
1 TT-TT-AGT
**
10733269 TTTTAAC
1 TTTTAGT
10733276 TTTTAGT
1 TTTTAGT
10733283 ATTTTAG-
1 -TTTTAGT
*
10733290 TTATAGT
1 TTTTAGT
*
10733297 TTCTTCATT
1 TT-TT-AGT
*
10733306 TTTTAAT
1 TTTTAGT
10733313 TTTTAGT
1 TTTTAGT
10733320 ATTTTAG-
1 -TTTTAGT
10733327 TTTTAGT
1 TTTTAGT
* *
10733334 TTCCTAATT
1 TT--TTAGT
**
10733343 TTTTAAC
1 TTTTAGT
10733350 TTTTAGT
1 TTTTAGT
10733357 ATTTTAG-
1 -TTTTAGT
*
10733364 TTATAGT
1 TTTTAGT
*
10733371 TTCTTAATT
1 TT-TT-AGT
*
10733380 TTTTAAT
1 TTTTAGT
10733387 TTTTAGT
1 TTTTAGT
10733394 ATTTTAG-
1 -TTTTAGT
*
10733401 TTATAGT
1 TTTTAGT
*
10733408 TTCTTAATT
1 TT-TT-AGT
**
10733417 TTTTAAC
1 TTTTAGT
10733424 TTTTAGT
1 TTTTAGT
10733431 ATTTTAG-
1 -TTTTAGT
*
10733438 TTATAGT
1 TTTTAGT
*
10733445 TTCTTAATT
1 TT-TT-AGT
**
10733454 TTTTAAC
1 TTTTAGT
10733461 TTTTAGT
1 TTTTAGT
10733468 ATTTTAGT
1 -TTTTAGT
*
10733476 TGTT-GT
1 TTTTAGT
*
10733482 TTCTTAATT
1 TT-TT-AGT
**
10733491 TTTTAAC
1 TTTTAGT
10733498 TTTTAGT
1 TTTTAGT
10733505 ATTTTAG-
1 -TTTTAGT
* *
10733512 TTATGGT
1 TTTTAGT
*
10733519 TTCTTAATT
1 TT-TT-AGT
*
10733528 TTTTAAT
1 TTTTAGT
10733535 TTTTAGT
1 TTTTAGT
10733542 ATTTTAG-
1 -TTTTAGT
10733549 TTTTAG-
1 TTTTAGT
10733555 TTTTAGT
1 TTTTAGT
*
10733562 TTCTTAATT
1 TT-TT-AGT
**
10733571 TTTTAAC
1 TTTTAGT
10733578 TTTTAGT
1 TTTTAGT
10733585 ATTTTAG-
1 -TTTTAGT
10733592 TTTTAGT
1 TTTTAGT
*
10733599 TTCTTAATTT
1 TT-TT-A-GT
**
10733609 TTTTAAA
1 TTTTAGT
10733616 TTTTAG-
1 TTTTAGT
10733622 TTTTAGT
1 TTTTAGT
10733629 TGTTT--T
1 T-TTTAGT
* * *
10733635 CTTAATT
1 TTTTAGT
**
10733642 TTTTAAC
1 TTTTAGT
10733649 TTTTA--
1 TTTTAGT
10733654 TTTTAG-
1 TTTTAGT
* *
10733660 TTATGGT
1 TTTTAGT
*
10733667 TTCTTAATT
1 TT-TT-AGT
*
10733676 TTTTAAT
1 TTTTAGT
*
10733683 TTTTATT
1 TTTTAGT
10733690 ATTTTAG-
1 -TTTTAGT
10733697 TTTTAG-
1 TTTTAGT
10733703 TTTTAGT
1 TTTTAGT
*
10733710 TTCTTAATT
1 TT-TT-AGT
**
10733719 TTTTAAC
1 TTTTAGT
10733726 TTTTAGT
1 TTTTAGT
10733733 ATTTTAG-
1 -TTTTAGT
10733740 TTTTAGT
1 TTTTAGT
*
10733747 TTCTTAATT
1 TT-TT-AGT
**
10733756 TTTTAAA
1 TTTTAGT
10733763 TTTTAGT
1 TTTTAGT
10733770 ATTTTAG-
1 -TTTTAGT
10733777 TTTTAGT
1 TTTTAGT
*
10733784 TTCTTAATT
1 TT-TT-AGT
**
10733793 TTTTAAC
1 TTTTAGT
10733800 TTTTAGT
1 TTTTAGT
10733807 ATTTTAG-
1 -TTTTAGT
10733814 TTTTAGT
1 TTTTAGT
*
10733821 TTCTTAATT
1 TT-TT-AGT
**
10733830 TTTTAAC
1 TTTTAGT
10733837 TTTTAGT
1 TTTTAGT
10733844 ATTTTAG-
1 -TTTTAGT
10733851 TTTTAGT
1 TTTTAGT
*
10733858 TTCTTAATT
1 TT-TT-AGT
**
10733867 TTTTAAC
1 TTTTAGT
10733874 TTTTAGT
1 TTTTAGT
10733881 ATTTTAG-
1 -TTTTAGT
10733888 TTTTAGT
1 TTTTAGT
*
10733895 TTCTTAATT
1 TT-TT-AGT
**
10733904 TTTTAAC
1 TTTTAGT
10733911 TTTTAGT
1 TTTTAGT
10733918 ATTTTAG-
1 -TTTTAGT
10733925 TTTTAGT
1 TTTTAGT
*
10733932 TTCTTAATT
1 TT-TT-AGT
**
10733941 TTTTAAC
1 TTTTAGT
10733948 TTTTAGT
1 TTTTAGT
10733955 ATTTTAG-
1 -TTTTAGT
10733962 TTTTAGT
1 TTTTAGT
*
10733969 TTCTTAATT
1 TT-TT-AGT
**
10733978 TTTTAAC
1 TTTTAGT
10733985 TTTTAGT
1 TTTTAGT
10733992 ATTTTAG-
1 -TTTTAGT
*
10733999 TTATAGT
1 TTTTAGT
*
10734006 TTCTTAATT
1 TT-TT-AGT
**
10734015 TTTTAAC
1 TTTTAGT
10734022 TTTTAGT
1 TTTTAGT
10734029 ATTTTAG-
1 -TTTTAGT
10734036 TTTTAGT
1 TTTTAGT
*
10734043 TTCTTAATT
1 TT-TT-AGT
**
10734052 TTTTAAC
1 TTTTAGT
10734059 TTTTAGT
1 TTTTAGT
10734066 ATTTTAG-
1 -TTTTAGT
10734073 TTTTAGT
1 TTTTAGT
*
10734080 TTCTTAATT
1 TT-TT-AGT
**
10734089 TTTTAAC
1 TTTTAGT
10734096 TTTTAGT
1 TTTTAGT
10734103 ATTTTAG-
1 -TTTTAGT
10734110 TTTTAGT
1 TTTTAGT
*
10734117 TTCTTAAT
1 TT-TTAGT
10734125 TTTT
1 TTTT
10734129 TAACTTTTAA
Statistics
Matches: 1010, Mismatches: 200, Indels: 291
0.67 0.13 0.19
Matches are distributed among these distances:
5 14 0.01
6 210 0.21
7 322 0.32
8 349 0.35
9 112 0.11
10 3 0.00
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.64
Consensus pattern (7 bp):
TTTTAGT
Found at i:10733609 original size:14 final size:14
Alignment explanation
Indices: 10733528--10733609 Score: 53
Period size: 14 Copynumber: 5.7 Consensus size: 14
10733518 TTTCTTAATT
10733528 TTTTAATTTTTAGTA
1 TTTTAA-TTTTAGTA
*
10733543 TTTTAGTTTTAG--
1 TTTTAATTTTAGTA
* * *
10733555 TTTTAGTTTCTTAATT
1 TTTTA-ATT-TTAGTA
10733571 TTTTAACTTTTAGTA
1 TTTTAA-TTTTAGTA
*
10733586 TTTTAGTTTTAGT-
1 TTTTAATTTTAGTA
10733599 TTCTTAATTTT
1 TT-TTAATTTT
10733610 TTTAAATTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
12 5 0.09
13 4 0.08
14 23 0.43
15 14 0.26
16 7 0.13
ACGTcount: A:0.21, C:0.04, G:0.09, T:0.67
Consensus pattern (14 bp):
TTTTAATTTTAGTA
Found at i:10733979 original size:14 final size:14
Alignment explanation
Indices: 10733719--10733942 Score: 55
Period size: 14 Copynumber: 15.7 Consensus size: 14
10733709 TTTCTTAATT
10733719 TTTTAACTTTTAGTA
1 TTTTAA-TTTTAGTA
*
10733734 TTTTAGTTTTAGT-
1 TTTTAATTTTAGTA
10733747 TTCTTAA--TT--T-
1 TT-TTAATTTTAGTA
*
10733757 TTTAAATTTTAGTA
1 TTTTAATTTTAGTA
*
10733771 TTTTAGTTTTAGT-
1 TTTTAATTTTAGTA
*
10733784 TTCTTAATTTT-TTAA
1 TT-TTAATTTTAGT-A
10733799 CTTTTAGTATTTTAG--
1 -TTTTA--ATTTTAGTA
* * *
10733814 TTTTAGTTTCTTAATT
1 TTTTA-ATT-TTAGTA
10733830 TTTTAACTTTTAGTA
1 TTTTAA-TTTTAGTA
*
10733845 TTTTAGTTTTAGT-
1 TTTTAATTTTAGTA
*
10733858 TTCTTAATTTT-TTAA
1 TT-TTAATTTTAGT-A
10733873 CTTTTAGTATTTTAG--
1 -TTTTA--ATTTTAGTA
* * *
10733888 TTTTAGTTTCTTAATT
1 TTTTA-ATT-TTAGTA
10733904 TTTTAACTTTTAGTA
1 TTTTAA-TTTTAGTA
*
10733919 TTTTAGTTTTAGT-
1 TTTTAATTTTAGTA
10733932 TTCTTAATTTT
1 TT-TTAATTTT
10733943 TTAACTTTTA
Statistics
Matches: 154, Mismatches: 26, Indels: 59
0.64 0.11 0.25
Matches are distributed among these distances:
9 3 0.02
10 3 0.02
11 2 0.01
12 2 0.01
13 15 0.10
14 72 0.47
15 29 0.19
16 18 0.12
17 10 0.06
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (14 bp):
TTTTAATTTTAGTA
Found at i:10739599 original size:22 final size:22
Alignment explanation
Indices: 10739547--10739599 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
10739537 TCAAGAGTTA
** *
10739547 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTACATGATATAATTC
*
10739569 CATGG-GTTACATGATATAATTT
1 CA-GGAGTTACATGATATAATTC
10739591 CAGGAGTTA
1 CAGGAGTTA
10739600 TAACAGCTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 21 0.84
23 2 0.08
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (22 bp):
CAGGAGTTACATGATATAATTC
Found at i:10740875 original size:35 final size:36
Alignment explanation
Indices: 10740829--10740911 Score: 107
Period size: 35 Copynumber: 2.3 Consensus size: 36
10740819 GTAAAATATT
*
10740829 AATTAATAATTTAGT-ATTTTTTATT-TTTATTAATA
1 AATTAATAATTTA-TCATTTTTTATTATCTATTAATA
* *
10740864 AATTAACAATTTATCATTTTTTATTATCTATTAGTA
1 AATTAATAATTTATCATTTTTTATTATCTATTAATA
*
10740900 CATTAATAATTT
1 AATTAATAATTT
10740912 TTAATGAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
34 1 0.02
35 22 0.54
36 18 0.44
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.55
Consensus pattern (36 bp):
AATTAATAATTTATCATTTTTTATTATCTATTAATA
Found at i:10746709 original size:20 final size:21
Alignment explanation
Indices: 10746675--10746715 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
10746665 TGCAGTGATT
10746675 TCATCCCCAAATGGCTAGAAA
1 TCATCCCCAAATGGCTAGAAA
10746696 TCATCCCC-AATGGCTAGAAA
1 TCATCCCCAAATGGCTAGAAA
10746716 CGGCCACAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.37, C:0.29, G:0.15, T:0.20
Consensus pattern (21 bp):
TCATCCCCAAATGGCTAGAAA
Found at i:10749264 original size:13 final size:13
Alignment explanation
Indices: 10749246--10749282 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
10749236 TTTTAAAGAA
10749246 AAAATTGATTTTG
1 AAAATTGATTTTG
10749259 AAAATTGATTTTG
1 AAAATTGATTTTG
*
10749272 AAAAATGATTT
1 AAAATTGATTT
10749283 AGAACTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (13 bp):
AAAATTGATTTTG
Found at i:10753939 original size:14 final size:14
Alignment explanation
Indices: 10753920--10753951 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
10753910 AATTGTTTAG
10753920 AAATTATTTATTAT
1 AAATTATTTATTAT
10753934 AAATTATTTATTAT
1 AAATTATTTATTAT
10753948 AAAT
1 AAAT
10753952 ATCTAGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AAATTATTTATTAT
Found at i:10754260 original size:7 final size:7
Alignment explanation
Indices: 10754248--10754273 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10754238 CCGTAGGCTA
10754248 GCTGCTT
1 GCTGCTT
10754255 GCTGCTT
1 GCTGCTT
10754262 GCTGCTT
1 GCTGCTT
10754269 GCTGC
1 GCTGC
10754274 AACATTTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.31, G:0.31, T:0.38
Consensus pattern (7 bp):
GCTGCTT
Found at i:10755042 original size:30 final size:30
Alignment explanation
Indices: 10755008--10755120 Score: 86
Period size: 30 Copynumber: 3.7 Consensus size: 30
10754998 TATTGAAATA
10755008 AAAATATAATATAATATTATTAAAATTATT
1 AAAATATAATATAATATTATTAAAATTATT
* * * **
10755038 AAAATATATTTTAATAATTAATAATTTTATT
1 AAAATATAATATAAT-ATTATTAAAATTATT
* * *
10755069 AAAATGATACTAAAATATTA-TATTAA-TATT
1 AAAAT-ATAATATAATATTATTA-AAATTATT
* *
10755099 AAATTTATAAAATAATATTATT
1 AAA-ATATAATATAATATTATT
10755121 TTGAGTATTT
Statistics
Matches: 63, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
30 33 0.52
31 23 0.37
32 7 0.11
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
AAAATATAATATAATATTATTAAAATTATT
Found at i:10755069 original size:40 final size:41
Alignment explanation
Indices: 10755018--10755100 Score: 107
Period size: 40 Copynumber: 2.0 Consensus size: 41
10755008 AAAATATAAT
* *
10755018 ATAATATTATTAAAAT-TATTAAAATA-TATTTTAATAATTA
1 ATAATATTATTAAAATATACTAAAATATTATATTAAT-ATTA
*
10755058 ATAATTTTATTAAAATGATACTAAAATATTATATTAATATTA
1 ATAATATTATTAAAAT-ATACTAAAATATTATATTAATATTA
10755100 A
1 A
10755101 ATTTATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 15 0.41
42 14 0.38
43 8 0.22
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (41 bp):
ATAATATTATTAAAATATACTAAAATATTATATTAATATTA
Found at i:10755104 original size:40 final size:39
Alignment explanation
Indices: 10755018--10755111 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 39
10755008 AAAATATAAT
* *
10755018 ATAATATTATTAAAATTATTAAAATATATTTTAATAATTA
1 ATAAT-TTATTAAAATTACTAAAATATATATTAATAATTA
10755058 ATAATTTTATTAAAATGATACTAAAATATTATATTAAT-ATT-
1 ATAA-TTTATTAAAAT--TACTAAAATA-TATATTAATAATTA
10755099 A-AATTTA-TAAAAT
1 ATAATTTATTAAAAT
10755112 AATATTATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
38 6 0.12
39 4 0.08
40 16 0.33
41 2 0.04
42 12 0.25
43 8 0.17
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (39 bp):
ATAATTTATTAAAATTACTAAAATATATATTAATAATTA
Found at i:10761770 original size:28 final size:28
Alignment explanation
Indices: 10761717--10761771 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
10761707 CTAGGGGGAG
* **
10761717 GTTTAGGTTGAGTGAGGCTTGGTTTTGA
1 GTTTAGGGTGAGTGAGGCTTCATTTTGA
10761745 GTTTAGGGTGAG-GAGAGCTTCATTTTG
1 GTTTAGGGTGAGTGAG-GCTTCATTTTG
10761772 GGGTATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 3 0.13
28 20 0.87
ACGTcount: A:0.16, C:0.05, G:0.38, T:0.40
Consensus pattern (28 bp):
GTTTAGGGTGAGTGAGGCTTCATTTTGA
Found at i:10765355 original size:47 final size:47
Alignment explanation
Indices: 10765286--10765878 Score: 893
Period size: 47 Copynumber: 12.6 Consensus size: 47
10765276 AAATCAAATT
* * *
10765286 CATAATTAAAAATGCGTGAAAGGATGCATTAAGGCATGAACGAATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
10765333 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACAGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
10765380 CATAATTGAAAATGCATGAAAGGATACATTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* * * *
10765427 CATAATTGAAAATGCATGAAAGGATGCATTAAGGTATAAACTGATTC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765474 CATAATTGAAAATGCATGAAATGATGCATTAAGGCATAAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765521 CATAATTGAAATTGCATGAAATGATGCATTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
*
10765568 CATAATTGAAAATGCATGAAAGGATACATTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* * * *
10765615 CATAATTGAAAATGCATGAAAGGATGCATTAAGGTATAAACTGATTC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765662 CATAATTGAAAATGCATGAAATGATGCATTAAGGCATAAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765709 CATAATTGAAATTGCATGAAATGATGCATTAAGGCATGAACGGATGC
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765756 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAATGGATGT
1 CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
* *
10765803 CATAATTGAAAATGAATGAAAAGGATGCATTAAGGCATGAAAGGATGC
1 CATAATTGAAAATGCATG-AAAGGATGCATTAAGGCATGAACGGATGC
10765851 CATGTATATT-AAAATGCAT-AAATGGATG
1 CA--TA-ATTGAAAATGCATGAAA-GGATG
10765879 TGTTAATACG
Statistics
Matches: 502, Mismatches: 39, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
47 452 0.90
48 32 0.06
49 5 0.01
50 10 0.02
51 3 0.01
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.24
Consensus pattern (47 bp):
CATAATTGAAAATGCATGAAAGGATGCATTAAGGCATGAACGGATGC
Found at i:10765371 original size:20 final size:20
Alignment explanation
Indices: 10765346--10765426 Score: 56
Period size: 20 Copynumber: 3.7 Consensus size: 20
10765336 AATTGAAAAT
10765346 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
10765366 GCATGAACA-GATGCCATAATTGAAAAT
1 GCATGAA-AGGATG-C---ATT---AAG
*
10765393 GCATGAAAGGATACATTAAG
1 GCATGAAAGGATGCATTAAG
*
10765413 GCATGAACGGATGC
1 GCATGAAAGGATGC
10765427 CATAATTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 18
0.67 0.07 0.26
Matches are distributed among these distances:
20 25 0.53
21 2 0.04
23 3 0.06
24 3 0.06
26 2 0.04
27 12 0.26
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.20
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:10765566 original size:20 final size:20
Alignment explanation
Indices: 10765543--10765614 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 20
10765533 TGCATGAAAT
10765543 GATGCATTAAGGCATGAACG
1 GATGCATTAAGGCATGAACG
* *
10765563 GATGCCATAATTGAAAATGCATGAAAG
1 GATG-C---ATT---AAGGCATGAACG
*
10765590 GATACATTAAGGCATGAACG
1 GATGCATTAAGGCATGAACG
10765610 GATGC
1 GATGC
10765615 CATAATTGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 18 0.46
21 1 0.03
23 3 0.08
24 3 0.08
26 1 0.03
27 13 0.33
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (20 bp):
GATGCATTAAGGCATGAACG
Found at i:10765754 original size:20 final size:20
Alignment explanation
Indices: 10765722--10765850 Score: 69
Period size: 20 Copynumber: 5.7 Consensus size: 20
10765712 AATTGAAATT
*
10765722 GCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
10765742 GCATGAACGGATGCCATAATTGAAAAT
1 GCATGAAAGGATG-C---ATT---AAG
10765769 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
* *
10765789 GCATGAATGGATGTCATAATTGAAAAT
1 GCATGAAAGGATG-C---ATT---AAG
*
10765816 GAATGAAAAGGATGCATTAAG
1 GCATG-AAAGGATGCATTAAG
10765837 GCATGAAAGGATGC
1 GCATGAAAGGATGC
10765851 CATGTATATT
Statistics
Matches: 83, Mismatches: 11, Indels: 30
0.67 0.09 0.24
Matches are distributed among these distances:
20 34 0.41
21 8 0.10
23 3 0.04
24 9 0.11
26 1 0.01
27 21 0.25
28 7 0.08
ACGTcount: A:0.41, C:0.10, G:0.26, T:0.22
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:10770651 original size:15 final size:14
Alignment explanation
Indices: 10770631--10770679 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
10770621 AAAGAAGGAA
*
10770631 AAAAAAAGAAAGAAG
1 AAAAATAGAAA-AAG
10770646 ACAAAATAGAAAAAG
1 A-AAAATAGAAAAAG
* *
10770661 AAAAAGAGGAAAAG
1 AAAAATAGAAAAAG
10770675 AAAAA
1 AAAAA
10770680 GAAAAAATGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 16 0.53
15 5 0.17
16 9 0.30
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAAATAGAAAAAG
Found at i:10770664 original size:6 final size:6
Alignment explanation
Indices: 10770629--10770685 Score: 53
Period size: 6 Copynumber: 8.7 Consensus size: 6
10770619 ATAAAGAAGG
10770629 AAAA-A AAAAGA AAGAAGACA AAATAGA AAAAGA AAAAGA GGAAAAGA
1 AAAAGA AAAAGA AA-AAG--A AAA-AGA AAAAGA AAAAGA --AAAAGA
10770676 AAAAGA AAAA
1 AAAAGA AAAA
10770686 ATGAGAGAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
5 4 0.09
6 22 0.49
7 7 0.16
8 7 0.16
9 5 0.11
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:10773204 original size:43 final size:41
Alignment explanation
Indices: 10773153--10773250 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 41
10773143 AATTGGTAAG
* *
10773153 TCATTCGGGCCATCAGTAAGTCTTTTCGAGCATGATGATTAAA
1 TCATTCGGGCCATCAGTAAGTC-TTTCGAGAAAGATGA-TAAA
* * ** *
10773196 TCCTTCGGGTCATTTGTAAGTCTTTCGAGAAAGATGATAAG
1 TCATTCGGGCCATCAGTAAGTCTTTCGAGAAAGATGATAAA
10773237 TCATTCGGGCCATC
1 TCATTCGGGCCATC
10773251 CATAAGACCT
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
41 14 0.31
42 13 0.29
43 18 0.40
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (41 bp):
TCATTCGGGCCATCAGTAAGTCTTTCGAGAAAGATGATAAA
Found at i:10773247 original size:250 final size:249
Alignment explanation
Indices: 10772784--10773636 Score: 1219
Period size: 249 Copynumber: 3.4 Consensus size: 249
10772774 TTGTATTGAA
* * * * * **
10772784 AATGAAAAAACGATTTCCAAAGTTTCTTATTTAAATCTTTTC-TAAAATGATTTTTTTTGAAAAG
1 AATGAGAAAGCGATTTCCAAAGTTTCTCATTT-AATGTTTTCAGAAAATGA-AATTTTTGAAAAG
* * * * *
10772848 TAAGAAAGTGATTTCCAAAGTTTCTTACCTAGTGAACTATTTCCC-AAATTGGTAAGTCCTTCGG
64 TAAGAAAGCGATTACCAAAGTTTCTTACCAAGTAAATTATTTCCCAAAATTGGTAAGTCCTTCGG
* * * * *
10772912 GCCATCAATAAGTCTTTCGAGCATGACGATTAAATCCTTCAGGTCATCTGTAAGTCTTTTGAGCA
129 GCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGCA
10772977 AGATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCACATG
194 AGATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCACATG
* *
10773033 AATAAGAAAGCGATTTCTAAAGTTTCTCATTTAATGTTTTCTA-AAAATGAAATTTTTGAAAAGT
1 AATGAGAAAGCGATTTCCAAAGTTTCTCATTTAATGTTTTC-AGAAAATGAAATTTTTGAAAAGT
** *
10773097 AAGAAAGCGGCTACCAAAGTTTCTTACCAAGTAAATTATTTCCCAAAATTGGTAAGTCATTCGGG
65 AAGAAAGCGATTACCAAAGTTTCTTACCAAGTAAATTATTTCCCAAAATTGGTAAGTCCTTCGGG
*
10773162 CCATCAGTAAGTCTTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGAA
130 CCATCAGTAAGTC-TTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGCA
* * * *
10773227 AGATGATAAGTCATTCGGGCCATCCATAAGACCTTCGGATAGGATTTTTTCACATG
194 AGATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCACATG
* * *
10773283 AATGAGAAAGCAATTTCCAAAGTTTCTCGTTAAATGTTTTCAGAAAATGAAATTTTTGAAAAGTA
1 AATGAGAAAGCGATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATTTTTGAAAAGTA
* * *
10773348 AGAAAACGATTATCAAAGTTTCTTACCCAGTAAATTATTTCCCAAAATTGGTAAGTCCTTCGGGC
66 AGAAAGCGATTACCAAAGTTTCTTACCAAGTAAATTATTTCCCAAAATTGGTAAGTCCTTCGGGC
10773413 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGCAAG
131 CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGCAAG
* * * *
10773478 ATGATAAGTCCTTCGGGCCATTCGTAAGATCTTTGGGTAGGATGTTTTTACATG
196 ATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCACATG
* * * *
10773532 AATGTGAATGTGATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATATTTGAAAAGTA
1 AATGAGAAAGCGATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATTTTTGAAAAGTA
* * * ** *
10773597 CGAAAGTGATTTCCAAAGAGTCTTACC-AGTAAACTATTTC
66 AGAAAGCGATTACCAAAGTTTCTTACCAAGTAAATTATTTC
10773637 AAAAAATGAT
Statistics
Matches: 538, Mismatches: 61, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
248 69 0.13
249 242 0.45
250 227 0.42
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (249 bp):
AATGAGAAAGCGATTTCCAAAGTTTCTCATTTAATGTTTTCAGAAAATGAAATTTTTGAAAAGTA
AGAAAGCGATTACCAAAGTTTCTTACCAAGTAAATTATTTCCCAAAATTGGTAAGTCCTTCGGGC
CATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATTTGTAAGTCTTTCGAGCAAG
ATGATAAGTCCTTCGGGCCATCCGTAAGACCTTCGGGTAGGATGTTTTCACATG
Found at i:10773450 original size:42 final size:40
Alignment explanation
Indices: 10773403--10773511 Score: 137
Period size: 42 Copynumber: 2.6 Consensus size: 40
10773393 AATTGGTAAG
*
10773403 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCGGGCCATC-GTAAGTCTTTCGAGCAAGATGA-TAAA
* * *
10773445 TCCTTCGGGTCATTTGTAAGTCTTTCGAGCAAGATGATAAG
1 TCCTTCGGGCCA-TCGTAAGTCTTTCGAGCAAGATGATAAA
10773486 TCCTTCGGGCCATTCGTAAGATCTTT
1 TCCTTCGGGCCA-TCGTAAG-TCTTT
10773512 GGGTAGGATG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
41 21 0.36
42 37 0.63
43 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (40 bp):
TCCTTCGGGCCATCGTAAGTCTTTCGAGCAAGATGATAAA
Found at i:10773935 original size:3 final size:3
Alignment explanation
Indices: 10773929--10773966 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
10773919 TATTATTATT
10773929 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
10773967 TAAATAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:10778275 original size:19 final size:19
Alignment explanation
Indices: 10778251--10778296 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10778241 TCTCTCTCTC
*
10778251 TTTCTTCCCTTCCATCACA
1 TTTCTTCCCTTCCATCAAA
** *
10778270 TTTCTTCATTTTCATCAAA
1 TTTCTTCCCTTCCATCAAA
10778289 TTTCTTCC
1 TTTCTTCC
10778297 TCTTTATCTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.17, C:0.33, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTCTTCCCTTCCATCAAA
Found at i:10790288 original size:14 final size:14
Alignment explanation
Indices: 10790251--10790289 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
10790241 CGTGCAGGGA
*
10790251 CAGCTGTCCAGTGC
1 CAGCTGTCCTGTGC
10790265 CAGCTGTCCTGTGC
1 CAGCTGTCCTGTGC
10790279 CAGCTGTCCTG
1 CAGCTGTCCTG
10790290 ATGCAGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.10, C:0.36, G:0.28, T:0.26
Consensus pattern (14 bp):
CAGCTGTCCTGTGC
Found at i:10793556 original size:17 final size:16
Alignment explanation
Indices: 10793525--10793567 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
10793515 GAGAAATGGT
*
10793525 AAAGACAAT-AAATAA
1 AAAGAAAATAAAATAA
10793540 AAAGATAAATAAAATAA
1 AAAGA-AAATAAAATAA
*
10793557 GAAGAAAATAA
1 AAAGAAAATAA
10793568 TCCTCACGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 10 0.42
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.14
Consensus pattern (16 bp):
AAAGAAAATAAAATAA
Found at i:10797182 original size:42 final size:42
Alignment explanation
Indices: 10797088--10797215 Score: 170
Period size: 44 Copynumber: 3.0 Consensus size: 42
10797078 AATATTTCAC
* * *
10797088 TTAGGGTGAAAACCCGAAAGGGCACTATAAGTTGAAAAAAAAAA
1 TTAGGGTGAAAACCCGAAA-GGAACTCTAAGTT-AAAAAAAGAA
10797132 TTAGGGTGAAAACCCGAAAGGTAACTCTAAGTTAAAAAAAGAA
1 TTAGGGTGAAAACCCGAAAGG-AACTCTAAGTTAAAAAAAGAA
*
10797175 -TAGGGTGAAAACCCGAAAAGACACTCTAAG-TAAAAAAAGAA
1 TTAGGGTGAAAACCCGAAAGGA-ACTCTAAGTTAAAAAAAGAA
10797216 AAAAAAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
41 12 0.15
42 27 0.35
43 11 0.14
44 28 0.36
ACGTcount: A:0.51, C:0.12, G:0.21, T:0.16
Consensus pattern (42 bp):
TTAGGGTGAAAACCCGAAAGGAACTCTAAGTTAAAAAAAGAA
Found at i:10803786 original size:19 final size:20
Alignment explanation
Indices: 10803764--10803805 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
10803754 AAAAAAATTG
*
10803764 TTTTGTTTTAAAT-TGTTGT
1 TTTTGATTTAAATATGTTGT
*
10803783 TTTTGATTTAATTATGTTGT
1 TTTTGATTTAAATATGTTGT
10803803 TTT
1 TTT
10803806 ACTGAAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (20 bp):
TTTTGATTTAAATATGTTGT
Found at i:10804436 original size:15 final size:16
Alignment explanation
Indices: 10804416--10804445 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10804406 CGCATTTGGT
10804416 TTAGATAAT-AACGGC
1 TTAGATAATGAACGGC
10804431 TTAGATAATGAACGG
1 TTAGATAATGAACGG
10804446 GAAATAGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (16 bp):
TTAGATAATGAACGGC
Found at i:10805249 original size:13 final size:13
Alignment explanation
Indices: 10805216--10805252 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10805206 TGAATTCTAA
*
10805216 ATATTTGGTTTGG
1 ATATTTGTTTTGG
10805229 ATATTTGTTTTGG
1 ATATTTGTTTTGG
*
10805242 ATGTTTGTTTT
1 ATATTTGTTTT
10805253 TGTTTAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.24, T:0.62
Consensus pattern (13 bp):
ATATTTGTTTTGG
Found at i:10806836 original size:32 final size:32
Alignment explanation
Indices: 10806790--10806852 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
10806780 CATGAAGAAT
* * *
10806790 GAGTCACCCGCGATTTTAACTTCACGACGAAA
1 GAGTCACCCACGATTTCAACTTCACAACGAAA
10806822 GAGTCACCCACGATTTCAACTTCACAACGAA
1 GAGTCACCCACGATTTCAACTTCACAACGAA
10806853 GGATATCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (32 bp):
GAGTCACCCACGATTTCAACTTCACAACGAAA
Found at i:10807762 original size:15 final size:15
Alignment explanation
Indices: 10807721--10807764 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
10807711 GAAAACATAA
*
10807721 TATTATATAGTTTTAT
1 TATTATAT-TTTTTAT
10807737 TATATATTATTTTTTAT
1 TAT-TA-TATTTTTTAT
10807754 TATTATATTTT
1 TATTATATTTT
10807765 GAATTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 6 0.24
16 5 0.20
17 11 0.44
18 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TATTATATTTTTTAT
Found at i:10810704 original size:21 final size:21
Alignment explanation
Indices: 10810654--10810704 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
10810644 CTGTTCTAAG
*
10810654 GTTTATATATTGACATTTAGC
1 GTTTATATCTTGACATTTAGC
* *
10810675 GTTTATATCTTGGCATTTAGT
1 GTTTATATCTTGACATTTAGC
10810696 GTTTATATC
1 GTTTATATC
10810705 AGATATAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.51
Consensus pattern (21 bp):
GTTTATATCTTGACATTTAGC
Found at i:10811712 original size:23 final size:22
Alignment explanation
Indices: 10811658--10811712 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
10811648 TCGTCCCAAA
* *
10811658 ATTTAATTATTATTATATTATT
1 ATTTATTTATTATTATAATATT
10811680 ATTTGATTTATTATTAATAATATAT
1 ATTT-ATTTATTATT-ATAATAT-T
10811705 ATTT-TTTA
1 ATTTATTTA
10811713 ATTTTTGGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 13 0.46
24 6 0.21
25 5 0.18
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTATTTATTATTATAATATT
Found at i:10824093 original size:132 final size:133
Alignment explanation
Indices: 10823818--10824176 Score: 400
Period size: 133 Copynumber: 2.6 Consensus size: 133
10823808 ATGAATCAAA
* * *
10823818 CTCGATTCAATCTTCCCTGAGTGACAGTGGAATGAATCAACTGCCCCATATATGATTTTTATTTC
1 CTCGATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAAC-GTCCCAAATATGA---TT-TTT-
* * * *
10823883 CCCTCAAGAAGAAGCGGAAC-AAGCCTCTCTCTTCCAATATTTGATACTCCCTGAGTAACAGTGG
60 -CATCAAGAAGAAGCAGAACAAATCC-CTCTCTTCCAAGATTTGATACTCCCTGAGTAACAGTGG
10823947 AACAAGTCTAC
123 AACAAGTCTAC
* *
10823958 CTCGATTCAATCTTCCCTGAG-CACAGTGGAATGAATCAACGTCTCCAAATATGATTTTTCTTCA
1 CTCGATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTC-CCAAATATGATTTTTCATCA
* * * * *
10824022 GGAAGAAGCAGAACAAATCCCTCTTTTTCAAGA-TTGATATTCCCTGAGTAACAGTTGAACAAGT
65 AGAAGAAGCAGAACAAATCCCTCTCTTCCAAGATTTGATACTCCCTGAGTAACAGTGGAACAAGT
*
10824086 CTGC
130 CTAC
* ** * ** * *
10824090 CTCGATTCAATCTTCCCTGAGTAATAGAAGAATGAATCAATGATCCCCGATCTGATTTTCCATCA
1 CTCGATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACG-TCCCAAATATGATTTTTCATCA
10824155 AGAAGAAGCAGAACAAATCCCT
65 AGAAGAAGCAGAACAAATCCCT
10824177 TATCATATTC
Statistics
Matches: 191, Mismatches: 24, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
132 53 0.28
133 77 0.40
134 6 0.03
135 3 0.02
136 2 0.01
138 2 0.01
139 27 0.14
140 21 0.11
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (133 bp):
CTCGATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCAAATATGATTTTTCATCAA
GAAGAAGCAGAACAAATCCCTCTCTTCCAAGATTTGATACTCCCTGAGTAACAGTGGAACAAGTC
TAC
Found at i:10824315 original size:3 final size:3
Alignment explanation
Indices: 10824307--10824352 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
10824297 CCAAAGTTTA
*
10824307 ATT ATT ATT A-T ATT ATT ATT -TGT TTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT
10824351 AT
1 AT
10824353 ATTTTTTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
2 3 0.08
3 35 0.90
4 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10825764 original size:17 final size:16
Alignment explanation
Indices: 10825734--10825778 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
10825724 ATATGAATTT
10825734 ATTTA-TTT-ATTTTA
1 ATTTATTTTAATTTTA
*
10825748 ATTTGTTTGTAATTTTA
1 ATTTATTT-TAATTTTA
10825765 ATTTATTTTAATTT
1 ATTTATTTTAATTT
10825779 AGTCGCCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 4 0.15
15 2 0.08
16 7 0.27
17 13 0.50
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (16 bp):
ATTTATTTTAATTTTA
Found at i:10827323 original size:42 final size:42
Alignment explanation
Indices: 10827248--10827455 Score: 195
Period size: 42 Copynumber: 5.0 Consensus size: 42
10827238 ATTTTGTAAT
* * * ** **
10827248 CGAGAATCGAATGTGTGATTCCTTCTTTTGTTCTTTTTTAGA
1 CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGA
10827290 CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGA
1 CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGA
* ** * *
10827332 TGAGAATAAAAAGTGCT-ATGCCTCATTCCA-TTATACTTTAGA
1 CGAGAATCGAAAGTG-TGATGCCTCCTT-CAGTTCTACTTTAGA
* * * *
10827374 CGATAATAGAAAGTGCGATGCCTCCTTCTGTTCTACTTTAGA
1 CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGA
* * * * *
10827416 TGATAATCGAAAGTGCGATGCCTCATTCCGTTCTACTTTA
1 CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTA
10827456 TTCACCTTTC
Statistics
Matches: 139, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 135 0.97
43 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (42 bp):
CGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGA
Found at i:10827394 original size:84 final size:84
Alignment explanation
Indices: 10827284--10827455 Score: 254
Period size: 84 Copynumber: 2.0 Consensus size: 84
10827274 TTTGTTCTTT
* * *
10827284 TTTAGACGAGAATCGAAAGTGTGATGCCTCCTTCAGTTCTACTTTAGATGAGAATAAAAAGTGCT
1 TTTAGACGAGAATAGAAAGTGCGATGCCTCCTTCAGTTCTACTTTAGATGAGAATAAAAAGTGCG
10827349 ATGCCTCATTCCATTATAC
66 ATGCCTCATTCCATTATAC
* * * **
10827368 TTTAGACGATAATAGAAAGTGCGATGCCTCCTTCTGTTCTACTTTAGATGATAATCGAAAGTGCG
1 TTTAGACGAGAATAGAAAGTGCGATGCCTCCTTCAGTTCTACTTTAGATGAGAATAAAAAGTGCG
* *
10827433 ATGCCTCATTCCGTTCTAC
66 ATGCCTCATTCCATTATAC
10827452 TTTA
1 TTTA
10827456 TTCACCTTTC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (84 bp):
TTTAGACGAGAATAGAAAGTGCGATGCCTCCTTCAGTTCTACTTTAGATGAGAATAAAAAGTGCG
ATGCCTCATTCCATTATAC
Found at i:10831409 original size:17 final size:17
Alignment explanation
Indices: 10831384--10831416 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10831374 GAACATTAAA
10831384 AAAAGATGTAAACAAAT
1 AAAAGATGTAAACAAAT
*
10831401 AAAATATGTAAACAAA
1 AAAAGATGTAAACAAA
10831417 ATGAAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (17 bp):
AAAAGATGTAAACAAAT
Found at i:10831418 original size:18 final size:18
Alignment explanation
Indices: 10831384--10831423 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
10831374 GAACATTAAA
10831384 AAAAGATGTAAACAAAT-
1 AAAAGATGTAAACAAATG
*
10831401 AAAATATGTAAACAAAATG
1 AAAAGATGTAAAC-AAATG
10831420 AAAA
1 AAAA
10831424 ATCTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
18 4 0.20
19 4 0.20
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (18 bp):
AAAAGATGTAAACAAATG
Found at i:10831471 original size:17 final size:17
Alignment explanation
Indices: 10831429--10831471 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
10831419 GAAAAATCTA
**
10831429 TAATTAAAAATAACTTT
1 TAATTAAAAATAAAATT
*
10831446 TAAAT-AAAATAAAATT
1 TAATTAAAAATAAAATT
10831462 TAATTAAAAA
1 TAATTAAAAA
10831472 AATTCATTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATTAAAAATAAAATT
Found at i:10832018 original size:22 final size:21
Alignment explanation
Indices: 10831988--10832030 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10831978 AAAAATAGTT
*
10831988 AAAAAACATACTTAGATTACA
1 AAAAAACATACTTACATTACA
*
10832009 AAAAACACATAGTTACATTACA
1 AAAAA-ACATACTTACATTACA
10832031 TAATATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.56, C:0.16, G:0.05, T:0.23
Consensus pattern (21 bp):
AAAAAACATACTTACATTACA
Found at i:10839872 original size:23 final size:23
Alignment explanation
Indices: 10839840--10839884 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
10839830 TAACTAGTCA
*
10839840 ATCCTGCCTGGTTGATATTCTTT
1 ATCCTCCCTGGTTGATATTCTTT
10839863 ATCCTCCCTGGTTGATATTCTT
1 ATCCTCCCTGGTTGATATTCTT
10839885 ACAAATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.24, G:0.16, T:0.47
Consensus pattern (23 bp):
ATCCTCCCTGGTTGATATTCTTT
Found at i:10843604 original size:20 final size:20
Alignment explanation
Indices: 10843575--10843613 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10843565 AGAGATCATA
*
10843575 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
10843595 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
10843614 GTGATGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:10848253 original size:55 final size:55
Alignment explanation
Indices: 10848151--10848368 Score: 217
Period size: 55 Copynumber: 4.0 Consensus size: 55
10848141 ATTTTCAGGG
*
10848151 GTTTCTTGAT-ATTTTTAAATGAG-TTTTAAAGAAACTAAGTCTGATTTTCAAAA
1 GTTTCTTGATAATTTTCAAATGAGTTTTTAAAGAAACTAAGTCTGATTTTCAAAA
* *
10848204 GTTTCTTGATAATTTTCAAATGAGTTTTTAAAGAAACTAAGTATAATTTTCATAAA
1 GTTTCTTGATAATTTTCAAATGAGTTTTTAAAGAAACTAAGTCTGATTTTCA-AAA
* * * * * * * * ***
10848260 -TTTCATGATGATTTTTAAATGGGCTTTCAAAGAAGCTAAGCCTGATTTTCAGGG
1 GTTTCTTGATAATTTTCAAATGAGTTTTTAAAGAAACTAAGTCTGATTTTCAAAA
* * * * *
10848314 GTTTCTTGATGATTATTTCCAATGAATTTTTAAAGAAGCTAAGCCTGATTTTCAA
1 GTTTCTTGAT-AAT-TTTCAAATGAGTTTTTAAAGAAACTAAGTCTGATTTTCAA
10848369 GGTTTTCGTG
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
53 10 0.08
54 12 0.09
55 74 0.56
56 4 0.03
57 33 0.25
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (55 bp):
GTTTCTTGATAATTTTCAAATGAGTTTTTAAAGAAACTAAGTCTGATTTTCAAAA
Found at i:10848359 original size:57 final size:56
Alignment explanation
Indices: 10848132--10848496 Score: 316
Period size: 57 Copynumber: 6.6 Consensus size: 56
10848122 TTTTTATATA
* *
10848132 CTAAGCCTAATTTTCAGGGGTTTCTTGAT-ATTTTT-AAATG-AGTTTTAAAGAAA
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGATTTTTCAAATGAATTTTTAAAGAAG
* * *** * * *
10848185 CTAAGTCTGATTTTCAAAAGTTTCTTGAT-AATTTTCAAATGAGTTTTTAAAGAAA
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGATTTTTCAAATGAATTTTTAAAGAAG
** **** * *** *
10848240 CTAAGTATAATTTTCATAAATTTCATGATGATTTTT-AAATGGGCTTTCAAAGAAG
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGATTTTTCAAATGAATTTTTAAAGAAG
* *
10848295 CTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATTTCCAATGAATTTTTAAAGAAG
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGATT-TTTCAAATGAATTTTTAAAGAAG
* * * * * *
10848352 CTAAGCCTGATTTTCAAGGTTTTCGTGATGATTATTTTC-CATGAA-TTTTAAACAAG
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGA-T-TTTTCAAATGAATTTTTAAAGAAG
* *
10848408 CTAAGCCTAATTTTCATGGGTTTCTTGATGACTATTTCCAAAT-AATTTTTAAAGTAA-
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGA-T-TTTTCAAATGAATTTTTAAAG-AAG
* *
10848465 CTAAGCCTAATTTTTAGGGGTTTCTGGATGAT
1 CTAAGCCTAATTTTCAGGGGTTTCTTGATGAT
10848497 AACTGTAAAC
Statistics
Matches: 255, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
53 29 0.11
54 5 0.02
55 75 0.29
56 54 0.21
57 84 0.33
58 7 0.03
59 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (56 bp):
CTAAGCCTAATTTTCAGGGGTTTCTTGATGATTTTTCAAATGAATTTTTAAAGAAG
Found at i:10848495 original size:113 final size:113
Alignment explanation
Indices: 10848132--10848496 Score: 302
Period size: 113 Copynumber: 3.3 Consensus size: 113
10848122 TTTTTATATA
* * ** * * * * *
10848132 CTAAGCCTAATTTTCAGGGGTTTCTTGAT-A-T-TTTTAAATGAGTTTTAAAGAAACTAAGTCTG
1 CTAAGCCTAATTTTCAAGGGTTTCGTGATGATTATTTTCCATGAATTTTAAACAAGCTAAGCCTA
*** * * * *
10848194 ATTTTCAAAAGTTTCTTGAT-AAT-TTTCAAATGAGTTTTTAAAGAAA
66 ATTTTCAGGGGTTTCTTGATGACTATTTCCAATGAATTTTTAAAGAAG
** ** * ** ** * *
10848240 CTAAGTATAATTTTCATA-AATTTCATGATGA-T-TTTTAAATGGGCTTTCAAAGAAGCTAAGCC
1 CTAAGCCTAATTTTCA-AGGGTTTCGTGATGATTATTTTCCAT-GAATTTTAAACAAGCTAAGCC
* *
10848302 TGATTTTCAGGGGTTTCTTGATGATTATTTCCAATGAATTTTTAAAGAAG
64 TAATTTTCAGGGGTTTCTTGATGACTATTTCCAATGAATTTTTAAAGAAG
* *
10848352 CTAAGCCTGATTTTCAAGGTTTTCGTGATGATTATTTTCCATGAATTTTAAACAAGCTAAGCCTA
1 CTAAGCCTAATTTTCAAGGGTTTCGTGATGATTATTTTCCATGAATTTTAAACAAGCTAAGCCTA
*
10848417 ATTTTCATGGGTTTCTTGATGACTATTTCCAAAT-AATTTTTAAAGTAA-
66 ATTTTCAGGGGTTTCTTGATGACTATTTCC-AATGAATTTTTAAAG-AAG
* *
10848465 CTAAGCCTAATTTTTAGGGGTTTC-TGGATGAT
1 CTAAGCCTAATTTTCAAGGGTTTCGT-GATGAT
10848497 AACTGTAAAC
Statistics
Matches: 209, Mismatches: 37, Indels: 17
0.79 0.14 0.06
Matches are distributed among these distances:
108 22 0.11
109 10 0.05
110 35 0.17
111 3 0.01
112 44 0.21
113 84 0.40
114 11 0.05
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (113 bp):
CTAAGCCTAATTTTCAAGGGTTTCGTGATGATTATTTTCCATGAATTTTAAACAAGCTAAGCCTA
ATTTTCAGGGGTTTCTTGATGACTATTTCCAATGAATTTTTAAAGAAG
Found at i:10848961 original size:239 final size:238
Alignment explanation
Indices: 10848542--10849242 Score: 926
Period size: 241 Copynumber: 2.9 Consensus size: 238
10848532 ATTTTCAAGG
* * *
10848542 GTTTCTTGA-TTAGTAAGCCCTTCGGGCCATCATTAAGTCTTTCGATCATGATGTTTAAATCCTT
1 GTTTCTT-ACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGTTTAAATCCTT
* * * *
10848606 CGGCTCATCTATAAGTCTTTCAAGCAAGATGATAAGTGCTTCGA-CCATCAATAAGACTTTTGGG
65 CGGTTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATC-ATAAGAC-TTCGGG
* * * *
10848670 CAGGATGTTTTCACATGATTTTCAAAAAATGAGAAAGCGATTTCCAAAGTTTCTTATCTAAATAT
128 CAGGATGTTTTCACATGATTTTCGAAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAAATAT
* * *
10848735 TTTCTAAAAACTGACTTTTCTAAAAAGTAAGAAAACAATTTCCAAA
193 TTTCTGAAAACTGATTTTTCTGAAAAGTAAGAAAACAATTTCCAAA
*
10848781 GTTTCTTACTTAGTAAGTCCTTCGGGCTATCAGTAAGTCTTTCGAGCATGATGTTTAAAT-CTTC
1 GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGTTTAAATCCTTC
* * * *
10848845 GATTCATCTATAAGTCCTCCGAGCAAGATGATAAATCCTTCGAGCCATACATAAGATCTTCGGGC
66 GGTTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCCTTCGAGCCAT-CATAAGA-CTTCGGGC
* * *
10848910 AGGATGTTTTCACATGGTTTTCGAAAAATGAGAAAGTGATTTCTAAAGTTTCCCATTTAAATATT
129 AGGATGTTTTCACATGATTTTCGAAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAAATATT
* * *
10848975 TTCTGAAAATTCGATTTTTCTTGAAGAGTAAGAAAATAATTTCCAAA
194 TTCTGAAAACT-GATTTTTC-TGAAAAGTAAGAAAACAATTTCCAAA
* * * * * * **
10849022 GTTTCTTACTGAGTAAGTCATTCAGGCCATTAGTAAGTCTTTCTAGAATGATGCATAAATCCTTC
1 GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGTTTAAATCCTTC
*
10849087 GGGTT-ATCTATAAGTCTTTCGAGTAAGATGATAAGTCCTTCGAGCCATCCA-AAGACCTTCGGG
66 -GGTTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCCTTCGAGCCAT-CATAAGA-CTTCGGG
* * * *
10849150 CAGGATGTTTTCACATGATTTTTGAAAAATAAGATAGTGATTTCCAAAGTTTCTCATTTAAATCT
128 CAGGATGTTTTCACATGATTTTCGAAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAAATAT
*
10849215 TTTTTGAAAACTGATTTTTCTGAAAAGT
193 TTTCTGAAAACTGATTTTTCTGAAAAGT
10849243 TTGTCATTTG
Statistics
Matches: 403, Mismatches: 51, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
238 41 0.10
239 144 0.36
240 17 0.04
241 153 0.38
242 45 0.11
243 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (238 bp):
GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGTTTAAATCCTTC
GGTTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCCTTCGAGCCATCATAAGACTTCGGGCAG
GATGTTTTCACATGATTTTCGAAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAAATATTTT
CTGAAAACTGATTTTTCTGAAAAGTAAGAAAACAATTTCCAAA
Found at i:10852390 original size:19 final size:20
Alignment explanation
Indices: 10852368--10852405 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10852358 AATTTTGATA
10852368 AAAATAAAAT-GTTTTTATT
1 AAAATAAAATAGTTTTTATT
* *
10852387 AAAATCACATAGTTTTTAT
1 AAAATAAAATAGTTTTTAT
10852406 GGTGTCCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (20 bp):
AAAATAAAATAGTTTTTATT
Found at i:10864202 original size:2 final size:2
Alignment explanation
Indices: 10864195--10864223 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10864185 TGCATAACTT
10864195 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10864224 TCTTAAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10866705 original size:30 final size:30
Alignment explanation
Indices: 10866671--10866731 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
10866661 GAAATGATAA
* *
10866671 TTGAAGATCTTCGTCAACTTCCTTCAATTT
1 TTGAAGATATTCATCAACTTCCTTCAATTT
* *
10866701 TTGAAGATATTCATTAACTTCTTTCAATTT
1 TTGAAGATATTCATCAACTTCCTTCAATTT
10866731 T
1 T
10866732 CTTTACACTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.48
Consensus pattern (30 bp):
TTGAAGATATTCATCAACTTCCTTCAATTT
Found at i:10873093 original size:16 final size:17
Alignment explanation
Indices: 10873055--10873100 Score: 76
Period size: 18 Copynumber: 2.7 Consensus size: 17
10873045 TGTTTATGAG
10873055 GGAATTGGAATCTGTGAA
1 GGAATTGGAATCTGT-AA
10873073 GGAATTGGAATCTGT-A
1 GGAATTGGAATCTGTAA
10873089 GGAATTGGAATC
1 GGAATTGGAATC
10873101 CAATTCCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 13 0.46
18 15 0.54
ACGTcount: A:0.33, C:0.07, G:0.33, T:0.28
Consensus pattern (17 bp):
GGAATTGGAATCTGTAA
Found at i:10873755 original size:37 final size:38
Alignment explanation
Indices: 10873671--10873757 Score: 142
Period size: 38 Copynumber: 2.3 Consensus size: 38
10873661 CCTAAACCCG
*
10873671 AACCCGACCCGACCTGACCTGAATATCATACTTAAAAA
1 AACCCGACCCGACCTGACCTGAATATCACACTTAAAAA
10873709 AACCCGACCCGA-CTCGACCTGAATATCACACTT-AAAA
1 AACCCGACCCGACCT-GACCTGAATATCACACTTAAAAA
10873746 AACCCGACCCGA
1 AACCCGACCCGA
10873758 ACAAAATAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
37 18 0.38
38 29 0.62
ACGTcount: A:0.38, C:0.36, G:0.11, T:0.15
Consensus pattern (38 bp):
AACCCGACCCGACCTGACCTGAATATCACACTTAAAAA
Found at i:10874014 original size:37 final size:39
Alignment explanation
Indices: 10873930--10874017 Score: 155
Period size: 38 Copynumber: 2.3 Consensus size: 39
10873920 CCTAAACCCG
10873930 AACCCGACCCGA-TCAGACCCGAATATCACACTTAAAAA
1 AACCCGACCCGACTCAGACCCGAATATCACACTTAAAAA
10873968 AACCCGACCCGACTC-GACCCGAATATCACACTT-AAAA
1 AACCCGACCCGACTCAGACCCGAATATCACACTTAAAAA
10874005 AACCCGACCCGAC
1 AACCCGACCCGAC
10874018 CCGAACAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
37 17 0.35
38 30 0.61
39 2 0.04
ACGTcount: A:0.39, C:0.39, G:0.11, T:0.11
Consensus pattern (39 bp):
AACCCGACCCGACTCAGACCCGAATATCACACTTAAAAA
Found at i:10874109 original size:259 final size:254
Alignment explanation
Indices: 10873650--10874240 Score: 913
Period size: 259 Copynumber: 2.3 Consensus size: 254
10873640 GTGTCGTCCC
*
10873650 GTTTTTTTCACCCTAAACCCGAACCCGACCCGACCTGACCTGAATATCATACTTAAAAAAACCCG
1 GTTTTTTTCACCCTAAACCCGAACCCGACCCGA-C-GACCTGAATATCACACTTAAAAAAACCCG
*
10873715 ACCCGACTCGACCTGAATATCACACTTAAAAAACCCGACCCGAACAAAATAAAGTTTCATCCGAC
64 ACCCGACTCGACCCGAATATCACACTTAAAAAACCCGACCCGAACAAAATAAAGTTTCATCCGAC
*
10873780 CCGACCCGAATATATGAATGAGAAATCCAACCCGACCCGACCCGAAATAATAAAAAATTATTTTT
129 CCGACCCGAATATATGAATGAGAAATCCAA--C-ACCCGACCCGAAATAATAAAAAAATATTTTT
* *
10873845 ATTTAATAAAAATAGTGACTTAATCCGACCCGACCCAAATTATATATATTTTCGGGTCGGTACG
191 ATTTAATAAAAACAGTGACTTAATCCGACCCGACCCAAATTATATATATTTTCAGGTCGGTACG
*
10873909 GTTTTTTTCACCCTAAACCCGAACCCGACCCGATCAGACCCGAATATCACACTTAAAAAAACCCG
1 GTTTTTTTCACCCTAAACCCGAACCCGACCCGA-C-GACCTGAATATCACACTTAAAAAAACCCG
10873974 ACCCGACTCGACCCGAATATCACACTTAAAAAACCCGACCCGACCCGAACAAAATAAAGTTTCAT
64 ACCCGACTCGACCCGAATATCACACTT-AAAAA----ACCCGACCCGAACAAAATAAAGTTTCAT
* *
10874039 CCGACCCGACCCGAATATATGAATTAGAAATCC-A-ACTCGACCCGAAATAATAAAAAAATATTT
124 CCGACCCGACCCGAATATATGAATGAGAAATCCAACACCCGACCCGAAATAATAAAAAAATATTT
*
10874102 TTATTTAATAAAAACAGTGACTTAATCCGACCCGACCCGAATTATATATATTTTCAGGTCGGTAC
189 TTATTTAATAAAAACAGTGACTTAATCCGACCCGACCCAAATTATATATATTTTCAGGTCGGTAC
10874167 G
254 G
* * * *
10874168 ATTTTTTTCACCCTAAACTCGAACTCGA-CC--CGACCTGAATATCACACTTAAAAAAACCCGAT
1 GTTTTTTTCACCCTAAACCCGAACCCGACCCGACGACCTGAATATCACACTTAAAAAAACCCGAC
*
10874230 CCGACCCGACC
66 CCGACTCGACC
10874241 AAAATAAAGT
Statistics
Matches: 310, Mismatches: 17, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
254 39 0.13
255 1 0.00
258 2 0.01
259 202 0.65
260 5 0.02
263 1 0.00
264 60 0.19
ACGTcount: A:0.37, C:0.29, G:0.12, T:0.23
Consensus pattern (254 bp):
GTTTTTTTCACCCTAAACCCGAACCCGACCCGACGACCTGAATATCACACTTAAAAAAACCCGAC
CCGACTCGACCCGAATATCACACTTAAAAAACCCGACCCGAACAAAATAAAGTTTCATCCGACCC
GACCCGAATATATGAATGAGAAATCCAACACCCGACCCGAAATAATAAAAAAATATTTTTATTTA
ATAAAAACAGTGACTTAATCCGACCCGACCCAAATTATATATATTTTCAGGTCGGTACG
Found at i:10877536 original size:23 final size:23
Alignment explanation
Indices: 10877506--10877569 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
10877496 ACGTTTTATA
10877506 TAGCACTTTGGTGCATTTCTACG
1 TAGCACTTTGGTGCATTTCTACG
* *
10877529 TAGCACTTTGGTGTAATTCTACG
1 TAGCACTTTGGTGCATTTCTACG
* *
10877552 TGGCACTTCGGTGCATTT
1 TAGCACTTTGGTGCATTT
10877570 ATATGAGTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.39
Consensus pattern (23 bp):
TAGCACTTTGGTGCATTTCTACG
Found at i:10878554 original size:23 final size:22
Alignment explanation
Indices: 10878513--10878555 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
10878503 CATTAGAGAA
*
10878513 AATAAAAGAAAAAGGATGAGGC
1 AATAAAAGAAAAAGAATGAGGC
10878535 AATAAAAGAAAAAAGAATGAG
1 AATAAAAG-AAAAAGAATGAG
10878556 AGGACTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.65, C:0.02, G:0.23, T:0.09
Consensus pattern (22 bp):
AATAAAAGAAAAAGAATGAGGC
Found at i:10882915 original size:24 final size:24
Alignment explanation
Indices: 10882886--10882931 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10882876 ATAGAATATG
*
10882886 AAAGAAGGAAAAAGAA-AAAATGAA
1 AAAGAAAG-AAAAGAATAAAATGAA
10882910 AAAGAAAGAAAAGAATAAAATG
1 AAAGAAAGAAAAGAATAAAATG
10882932 TGGGTTTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.07
Consensus pattern (24 bp):
AAAGAAAGAAAAGAATAAAATGAA
Found at i:10884063 original size:39 final size:38
Alignment explanation
Indices: 10883974--10884181 Score: 156
Period size: 39 Copynumber: 5.4 Consensus size: 38
10883964 CTACAAACTT
* *
10883974 TTGTCTCTCTTGAGACAT-GTTTCCCTTCAAAC-AAAA-A
1 TTGTCTCCCTTGAGAC-TCGTTT-CCTTGAAACAAAAATA
* * * *
10884011 TTGTCTTCCTTGAGACTCGTTTCCATTGAAACATAGATT
1 TTGTCTCCCTTGAGACTCGTTTCC-TTGAAACAAAAATA
* * *
10884050 TTGTCTCCCTTGAGGC-CTTTTTCCTTGAAACATAAATA
1 TTGTCTCCCTTGAGACTC-GTTTCCTTGAAACAAAAATA
* * * *
10884088 TTGTCTCTCTTAAGACTTGTTTCACTTGAAACAAATATA
1 TTGTCTCCCTTGAGACTCGTTTC-CTTGAAACAAAAATA
** *
10884127 TTGTCTCTATTGAGACACGTTTTCCTTGAAACAAAAA-A
1 TTGTCTCCCTTGAGACTCG-TTTCCTTGAAACAAAAATA
* *
10884165 TTTTTCTCCATTGAGAC
1 -TTGTCTCCCTTGAGAC
10884182 ATGTTTATCT
Statistics
Matches: 137, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
36 3 0.02
37 24 0.18
38 33 0.24
39 73 0.53
40 4 0.03
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39
Consensus pattern (38 bp):
TTGTCTCCCTTGAGACTCGTTTCCTTGAAACAAAAATA
Found at i:10884117 original size:77 final size:75
Alignment explanation
Indices: 10883972--10884163 Score: 208
Period size: 77 Copynumber: 2.5 Consensus size: 75
10883962 TCCTACAAAC
* * * *
10883972 TTTTGTCTCTCTTGAGACATGTTTCCCTTCAAACAAAAATTGTCTTCCTTGAGACTCGTTTCCAT
1 TTTTGTCTCTCTTGAGACCT-TTTTCCTTGAAACAAAAATTGTCTTCCTTAAGACTCGTTTCCAT
*
10884037 TGAAACATAGA
65 TGAAACAAAGA
* * *
10884048 TTTTGTCTCCCTTGAGGCCTTTTTCCTTGAAACATAAATATTGTC-TCTCTTAAGACTTGTTT-C
1 TTTTGTCTCTCTTGAGACCTTTTTCCTTGAAACA-AAA-ATTGTCTTC-CTTAAGACTCGTTTCC
*
10884111 ACTTGAAACAAATA
63 A-TTGAAACAAAGA
* * *
10884125 TATTGTCTCTATTGAGACACGTTTTCCTTGAAACAAAAA
1 TTTTGTCTCTCTTGAGAC-CTTTTTCCTTGAAACAAAAA
10884164 ATTTTTCTCC
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
75 12 0.12
76 25 0.26
77 45 0.46
78 15 0.15
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (75 bp):
TTTTGTCTCTCTTGAGACCTTTTTCCTTGAAACAAAAATTGTCTTCCTTAAGACTCGTTTCCATT
GAAACAAAGA
Found at i:10884182 original size:39 final size:37
Alignment explanation
Indices: 10883973--10884205 Score: 152
Period size: 39 Copynumber: 6.1 Consensus size: 37
10883963 CCTACAAACT
* * *
10883973 TTTGTCTCTCTTGAGACATGTTTCCCTTCAAACAAAAA
1 TTTGTCTC-CTTGAGACACGTTTTCCTTGAAACAAAAA
* * *
10884011 -TTGTCTTCCTTGAGACTCG-TTTCCATTGAAACATAGAT
1 TTTGTC-TCCTTGAGACACGTTTTCC-TTGAAACA-AAAA
* * *
10884049 TTTGTCTCCCTTGAGGC-CTTTTTCCTTGAAACATAAA
1 TTTGTCT-CCTTGAGACACGTTTTCCTTGAAACAAAAA
* ** *
10884086 TATTGTCTCTCTTAAGACTTG-TTTCACTTGAAACAAATA
1 T-TTGTCTC-CTTGAGACACGTTTTC-CTTGAAACAAAAA
*
10884125 TATTGTCTCTATTGAGACACGTTTTCCTTGAAACAAAAAA
1 T-TTGTCTC-CTTGAGACACGTTTTCCTTGAAAC-AAAAA
* * * *
10884165 TTTTTCTCCATTGAGACATGTTTAT-CTTGGAACAAAGA
1 TTTGTCTCC-TTGAGACACGTTT-TCCTTGAAACAAAAA
10884203 TTT
1 TTT
10884206 TGCCTACTTT
Statistics
Matches: 154, Mismatches: 27, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
36 4 0.03
37 24 0.16
38 37 0.24
39 79 0.51
40 10 0.06
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (37 bp):
TTTGTCTCCTTGAGACACGTTTTCCTTGAAACAAAAA
Found at i:10884812 original size:40 final size:40
Alignment explanation
Indices: 10884757--10884897 Score: 241
Period size: 40 Copynumber: 3.5 Consensus size: 40
10884747 GGAATTTTTT
10884757 ATGCATCT-AAGGCAAGTGCATTAAAATCATATGCATGTAG
1 ATGCAT-TAAAGGCAAGTGCATTAAAATCATATGCATGTAG
10884797 ATGCATTAAAGGCAAGTGCATTAAAATCATATGCATGTAG
1 ATGCATTAAAGGCAAGTGCATTAAAATCATATGCATGTAG
*
10884837 ATGTATTAAAGGCAAGTGCATTAAAATCATATGCATGT-G
1 ATGCATTAAAGGCAAGTGCATTAAAATCATATGCATGTAG
*
10884876 ATGCATTAAAGACAAGTGCATT
1 ATGCATTAAAGGCAAGTGCATT
10884898 CTCACATTTA
Statistics
Matches: 97, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 22 0.23
40 75 0.77
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (40 bp):
ATGCATTAAAGGCAAGTGCATTAAAATCATATGCATGTAG
Found at i:10885178 original size:17 final size:17
Alignment explanation
Indices: 10885156--10885190 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
10885146 AGATATATCT
10885156 CATCACTTCAAGAAGGA
1 CATCACTTCAAGAAGGA
10885173 CATCACTTCAAGAAGGA
1 CATCACTTCAAGAAGGA
10885190 C
1 C
10885191 TAATCCATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (17 bp):
CATCACTTCAAGAAGGA
Found at i:10885525 original size:51 final size:51
Alignment explanation
Indices: 10885470--10885731 Score: 167
Period size: 48 Copynumber: 5.4 Consensus size: 51
10885460 TTTAAACTAA
* * * * *
10885470 CTCTAGTGTCCCTTTGTTATGGAGAATTAGAGTATATTACGACTGATCAAG
1 CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
** * ** * *
10885521 CTCTAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGA---ACCGA-
1 CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
* *
10885568 CTCTAGTGTTCCTTTGTTATGGAGGAGTATAGTACATTAAGACTGATCAAG
1 CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
* * * * * * *
10885619 CTCTAGCG-T--TTTGTTATGTAGGAGTAAAGCAACTTATGA---ACCAA-
1 CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
* * * * * *
10885663 C-ATAATGTTCCATTGTTAT---GGAGTAAAGTACATTAAGACTGGTCAAG
1 CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
*
10885710 CTCTAGCGTTCCTTTGTTATGG
1 CTCTAGTGTTCCTTTGTTATGG
10885732 GGGAATAAAG
Statistics
Matches: 155, Mismatches: 42, Indels: 29
0.69 0.19 0.13
Matches are distributed among these distances:
43 18 0.12
44 2 0.01
45 4 0.03
46 10 0.06
47 36 0.23
48 41 0.26
50 4 0.03
51 40 0.26
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34
Consensus pattern (51 bp):
CTCTAGTGTTCCTTTGTTATGGAGGAGTAGAGTAAATTAAGACTGATCAAG
Found at i:10885617 original size:98 final size:98
Alignment explanation
Indices: 10885422--10885731 Score: 328
Period size: 98 Copynumber: 3.2 Consensus size: 98
10885412 CAACCAGTTT
* * * * *
10885422 TAGCATTCCTTTGTTATGAAGGAGTAGAGCAAATTTCATTTAAACTAACTCTAGTGTCCCTTTGT
1 TAGCATTCCTTTGTTATGGAGGAGTAGAG-AAA-AT--TTTGAACCAACTCTAGTGTTCCTTTGT
* * * * *
10885487 TATGGAGAATTAGAGTATATTACGACTGATCAAGCTC
62 TATGGAGGAGTAAAGTACATTAAGACTGATCAAGCTC
*
10885524 TAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGAACCGACTCTAGTGTTCCTTTGTTATG
1 TAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGAACCAACTCTAGTGTTCCTTTGTTATG
*
10885589 GAGGAGTATAGTACATTAAGACTGATCAAGCTC
66 GAGGAGTAAAGTACATTAAGACTGATCAAGCTC
* * * * * * * * *
10885622 TAGC-GT--TTTGTTATGTAGGAGTAAAGCAACTTATGAACCAAC-ATAATGTTCCATTGTTAT-
1 TAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGAACCAACTCTAGTGTTCCTTTGTTATG
*
10885682 --GGAGTAAAGTACATTAAGACTGGTCAAGCTC
66 GAGGAGTAAAGTACATTAAGACTGATCAAGCTC
*
10885713 TAGCGTTCCTTTGTTATGG
1 TAGCATTCCTTTGTTATGG
10885732 GGGAATAAAG
Statistics
Matches: 180, Mismatches: 25, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
91 33 0.18
92 1 0.01
94 24 0.13
95 30 0.17
97 1 0.01
98 59 0.33
100 1 0.01
101 3 0.02
102 28 0.16
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (98 bp):
TAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGAACCAACTCTAGTGTTCCTTTGTTATG
GAGGAGTAAAGTACATTAAGACTGATCAAGCTC
Found at i:10885709 original size:91 final size:93
Alignment explanation
Indices: 10885500--10885747 Score: 257
Period size: 94 Copynumber: 2.6 Consensus size: 93
10885490 GGAGAATTAG
* * * * *
10885500 AGTATATTACGACTGATCAAGCTCTAGCATTCCTTTGTTATGGAGGAGTAGAGAAAATTTTGAAC
1 AGTACATTAAGACTGATCAAGCTCTAGC-GT--TTTGTTATGGAGGAGTAAAGAAAATTATGAAC
* * * * *
10885565 CGACTCTAGTGTTCCTTTGTTATGGAGGAGTAT
63 CAACTATAATGTTCCATTGTTAT-G-GGAGTAA
* * *
10885598 AGTACATTAAGACTGATCAAGCTCTAGCGTTTTGTTATGTAGGAGTAAAGCAACTTATGAACCAA
1 AGTACATTAAGACTGATCAAGCTCTAGCGTTTTGTTATGGAGGAGTAAAGAAAATTATGAACCAA
10885663 C-ATAATGTTCCATTGTTAT-GGAGTAA
66 CTATAATGTTCCATTGTTATGGGAGTAA
* * * *
10885689 AGTACATTAAGACTGGTCAAGCTCTAGCGTTCCTTTGTTATGGGGGAATAAAGCAAATT
1 AGTACATTAAGACTGATCAAGCTCTAGCG-T--TTTGTTATGGAGGAGTAAAGAAAATT
10885748 TCTAAGACCA
Statistics
Matches: 129, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
91 34 0.26
92 1 0.01
94 37 0.29
95 30 0.23
97 1 0.01
98 26 0.20
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (93 bp):
AGTACATTAAGACTGATCAAGCTCTAGCGTTTTGTTATGGAGGAGTAAAGAAAATTATGAACCAA
CTATAATGTTCCATTGTTATGGGAGTAA
Found at i:10898333 original size:18 final size:18
Alignment explanation
Indices: 10898310--10898431 Score: 67
Period size: 18 Copynumber: 6.7 Consensus size: 18
10898300 AAAAGCAAAG
* *
10898310 AAAAAGGAACAAAGAGAA
1 AAAAAGGAAAAAAAAGAA
*
10898328 AAAAAGAAAAAAAAAGAA
1 AAAAAGGAAAAAAAAGAA
*
10898346 AAAGAAGGAAAGAAAATGCAA
1 AAA-AAGGAAA-AAAAAG-AA
* *
10898367 AGACAAA--AAAACAAAGAC
1 A-A-AAAGGAAAAAAAAGAA
*
10898385 AAAAA-CAAAAACAAAGAA
1 AAAAAGGAAAAA-AAAGAA
10898403 AAAAA-GAAAAAGAAA-AA
1 AAAAAGGAAAAA-AAAGAA
*
10898420 ACAAA-GAAAAAA
1 AAAAAGGAAAAAA
10898432 GAGGATAAGA
Statistics
Matches: 84, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
16 4 0.05
17 17 0.20
18 38 0.45
19 10 0.12
20 8 0.10
21 3 0.04
22 3 0.04
23 1 0.01
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.01
Consensus pattern (18 bp):
AAAAAGGAAAAAAAAGAA
Found at i:10898347 original size:6 final size:6
Alignment explanation
Indices: 10898306--10898430 Score: 58
Period size: 6 Copynumber: 19.5 Consensus size: 6
10898296 ATAGAAAAGC
* *
10898306 AAAGAA AAAGGAA CAAAGAGA AAAAAA GAAAAAA AAAGAA AAAGAA GGAAAGAA
1 AAAGAA AAA-GAA -AAAGA-A AAAGAA -AAAGAA AAAGAA AAAGAA --AAAGAA
* * * * *
10898360 AATG-C AAAGACA AAAAAA CAAAGACAA AAACAA AAACAA AGAA-AA AAAGAA
1 AAAGAA AAAGA-A AAAGAA -AAAG--AA AAAGAA AAAGAA A-AAGAA AAAGAA
*
10898411 AAAGAA AAA-AC AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAA
10898431 AGAGGATAAG
Statistics
Matches: 94, Mismatches: 11, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
5 9 0.10
6 46 0.49
7 24 0.26
8 13 0.14
9 2 0.02
ACGTcount: A:0.78, C:0.06, G:0.14, T:0.01
Consensus pattern (6 bp):
AAAGAA
Found at i:10898390 original size:12 final size:11
Alignment explanation
Indices: 10898317--10898431 Score: 69
Period size: 10 Copynumber: 10.2 Consensus size: 11
10898307 AAGAAAAAGG
*
10898317 AACAAAGAGAA
1 AACAAAGAAAA
10898328 AA-AAAGAAAA
1 AACAAAGAAAA
10898338 AA-AAAGAAAAA
1 AACAAAG-AAAA
*
10898349 GAAGGAAAGAAAA
1 -AA-CAAAGAAAA
**
10898362 TGCAAAGACAAAAA
1 AACAAAG---AAAA
10898376 AACAAAGACAAA
1 AACAAAGA-AAA
*
10898388 AACAAA-AACA
1 AACAAAGAAAA
*
10898398 AAGAAA-AAAA
1 AACAAAGAAAA
10898408 GAA-AAAGAAAA
1 -AACAAAGAAAA
10898419 AACAAAGAAAA
1 AACAAAGAAAA
10898430 AA
1 AA
10898432 GAGGATAAGA
Statistics
Matches: 84, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
10 28 0.33
11 28 0.33
12 11 0.13
13 4 0.05
14 13 0.15
ACGTcount: A:0.79, C:0.07, G:0.13, T:0.01
Consensus pattern (11 bp):
AACAAAGAAAA
Found at i:10898442 original size:26 final size:25
Alignment explanation
Indices: 10898306--10898431 Score: 109
Period size: 25 Copynumber: 5.1 Consensus size: 25
10898296 ATAGAAAAGC
* * *
10898306 AAAGAAAAAGGAACAA-AGAGAAAA
1 AAAGAAAAAGAAAAAACAAAGAAAA
**
10898330 AAAGAAAAA-AAAAGAA-AAAGAAGG
1 AAAGAAAAAGAAAA-AACAAAGAAAA
* * *
10898354 AAAGAAAATGCAAAGACAAA-AAAA
1 AAAGAAAAAGAAAAAACAAAGAAAA
10898378 CAAAGACAAAA-ACAAAAACAAAGAAAA
1 -AAAGA-AAAAGA-AAAAACAAAGAAAA
10898405 AAAGAAAAAGAAAAAACAAAGAAAA
1 AAAGAAAAAGAAAAAACAAAGAAAA
10898430 AA
1 AA
10898432 GAGGATAAGA
Statistics
Matches: 81, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
23 2 0.02
24 27 0.33
25 31 0.38
26 17 0.21
27 4 0.05
ACGTcount: A:0.79, C:0.06, G:0.14, T:0.01
Consensus pattern (25 bp):
AAAGAAAAAGAAAAAACAAAGAAAA
Found at i:10899679 original size:37 final size:36
Alignment explanation
Indices: 10899636--10899715 Score: 88
Period size: 37 Copynumber: 2.2 Consensus size: 36
10899626 GTTTCTCTCG
*
10899636 AAACAAAGCGTCGTCTCGCTAGAGACAGTTTTTCTAA
1 AAACAAAACGTCGTCTCGCTAGAGACAG-TTTTCTAA
** * * *
10899673 AAACAAAATTTTGTCTCGCTTGAGATAGTTTTCTAA
1 AAACAAAACGTCGTCTCGCTAGAGACAGTTTTCTAA
*
10899709 GAACAAA
1 AAACAAA
10899716 TTTTGTCTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
36 14 0.39
37 22 0.61
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (36 bp):
AAACAAAACGTCGTCTCGCTAGAGACAGTTTTCTAA
Found at i:10899724 original size:35 final size:34
Alignment explanation
Indices: 10899648--10899776 Score: 141
Period size: 36 Copynumber: 3.6 Consensus size: 34
10899638 ACAAAGCGTC
*
10899648 GTCTCGCTAGAGACAGTTTTTCTAAAAACAAAATTTT
1 GTCTCGCTTGAGACAG-TTTTCT-AAAAC-AAATTTT
*
10899685 GTCTCGCTTGAGATAGTTTTCTAAGAACAAATTTT
1 GTCTCGCTTGAGACAGTTTTCTAA-AACAAATTTT
* * *
10899720 GTCTCTCTTGAGACAATTTCTCTCAAAACAAATTTC
1 GTCTCGCTTGAGACAGTTT-TCT-AAAACAAATTTT
* *
10899756 GTCCCGCTTGAGACATTTTTC
1 GTCTCGCTTGAGACAGTTTTC
10899777 CTTTGAGATG
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
35 27 0.34
36 37 0.46
37 16 0.20
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (34 bp):
GTCTCGCTTGAGACAGTTTTCTAAAACAAATTTT
Found at i:10899989 original size:99 final size:99
Alignment explanation
Indices: 10899890--10900082 Score: 233
Period size: 101 Copynumber: 1.9 Consensus size: 99
10899880 TTAAGACAAA
** * * *
10899890 CTTTGAAATTGTTTCCTTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTAGTGAAATACCC
1 CTTTGAAATCATTTCCCTTGAAA-AAAATTTTGTCTCCCATGAGACAATTTCTAGTGAAACA-CC
10899955 ATCTTTGAGTTTGTTTCCCTTGAAACAAAACAAACAT
64 ATCTTTGAG-TTGTTTCCCTTGAAACAAAACAAACAT
* ** * * ** * *
10899992 CTTTGAGATCATTTCCCTTGAAATGAATTTTGTCTCTCATGAGACAGTTTCTCTTTAAACATCAT
1 CTTTGAAATCATTTCCCTTGAAAAAAATTTTGTCTCCCATGAGACAATTTCTAGTGAAACACCAT
10900057 CTTTGAGTTGTTTCCCTTGAAACAAA
66 CTTTGAGTTGTTTCCCTTGAAACAAA
10900083 TTTTGTCTCA
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
99 19 0.25
100 10 0.13
101 29 0.38
102 19 0.25
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (99 bp):
CTTTGAAATCATTTCCCTTGAAAAAAATTTTGTCTCCCATGAGACAATTTCTAGTGAAACACCAT
CTTTGAGTTGTTTCCCTTGAAACAAAACAAACAT
Done.