Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 56 of 78
Found at i:11062078 original size:39 final size:39
Alignment explanation
Indices: 11062000--11062078 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
11061990 TAATTTTTAA
* ** *
11062000 AGAATATTTTATTCCACTTGAGATGGTTTCTTTTGAAAC
1 AGAATATTTTATTCCACTTGAGATAGTTTCACTTAAAAC
*
11062039 AGAATATTTTA-TCTCGCTTGAGATAGTTTCACTTAAAAC
1 AGAATATTTTATTC-CACTTGAGATAGTTTCACTTAAAAC
11062078 A
1 A
11062079 AGAGTTGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.06
39 32 0.94
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (39 bp):
AGAATATTTTATTCCACTTGAGATAGTTTCACTTAAAAC
Found at i:11062117 original size:18 final size:19
Alignment explanation
Indices: 11062094--11062129 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
11062084 TGTTTCGCTT
11062094 GAAAC-AGAAGATTTATTC
1 GAAACAAGAAGATTTATTC
11062112 GAAACAAGAAGATTTATT
1 GAAACAAGAAGATTTATT
11062130 TCACTCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.47, C:0.08, G:0.17, T:0.28
Consensus pattern (19 bp):
GAAACAAGAAGATTTATTC
Found at i:11062216 original size:76 final size:76
Alignment explanation
Indices: 11062105--11062299 Score: 266
Period size: 76 Copynumber: 2.6 Consensus size: 76
11062095 AAACAGAAGA
* * * * *
11062105 TTTATTCGAAACAAGAAGATTT-ATTTCACTCAAGATTCTTTTTCTTAAAATAAGATTTGTCTCG
1 TTTACTCGAAAGAAG-ACATTTCATTTCACTCAAGATTATTTTTCTTAAAAAAAGATTTGTCTCG
11062169 CTTGAGACGATT
65 CTTGAGACGATT
* *
11062181 TTTACTCGAAAGAAGACATTTCATTTGACTCAAGATTATTTTTCTTAAAAAAATATTTGTCTCGC
1 TTTACTCGAAAGAAGACATTTCATTTCACTCAAGATTATTTTTCTTAAAAAAAGATTTGTCTCGC
* *
11062246 TTGAGATGGTT
66 TTGAGACGATT
* * *
11062257 TTTACTCGAAAGAAAACATTTCATTTTACTCAAGATTGTTTTT
1 TTTACTCGAAAGAAGACATTTCATTTCACTCAAGATTATTTTT
11062300 AAAGAAGATT
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
75 5 0.05
76 101 0.95
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.42
Consensus pattern (76 bp):
TTTACTCGAAAGAAGACATTTCATTTCACTCAAGATTATTTTTCTTAAAAAAAGATTTGTCTCGC
TTGAGACGATT
Found at i:11062222 original size:40 final size:40
Alignment explanation
Indices: 11062178--11062300 Score: 103
Period size: 40 Copynumber: 3.2 Consensus size: 40
11062168 GCTTGAGACG
*
11062178 ATTTTTACTCGAAAGAAGACATTTCATTTGACTCAAGATT
1 ATTTTTACTCGAAAGAAAACATTTCATTTGACTCAAGATT
* * * * ** *
11062218 ATTTTT-CT-TAAA-AAAATATTT-GTCTCG-CTTGAGATG
1 ATTTTTACTCGAAAGAAAACATTTCAT-TTGACTCAAGATT
* *
11062254 GTTTTTACTCGAAAGAAAACATTTCATTTTACTCAAGATT
1 ATTTTTACTCGAAAGAAAACATTTCATTTGACTCAAGATT
*
11062294 GTTTTTA
1 ATTTTTA
11062301 AAGAAGATTA
Statistics
Matches: 60, Mismatches: 17, Indels: 12
0.67 0.19 0.13
Matches are distributed among these distances:
36 12 0.20
37 11 0.18
38 6 0.10
39 11 0.18
40 20 0.33
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (40 bp):
ATTTTTACTCGAAAGAAAACATTTCATTTGACTCAAGATT
Found at i:11062363 original size:20 final size:20
Alignment explanation
Indices: 11062340--11062398 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
11062330 TCACTCGAAC
11062340 AAGAAGATTTTATCTCGCTT
1 AAGAAGATTTTATCTCGCTT
* ***
11062360 AAGATAG-TTTCAT-TCGAAA
1 AAGA-AGATTTTATCTCGCTT
*
11062379 AAAAAGATTTTATCTCGCTT
1 AAGAAGATTTTATCTCGCTT
11062399 GAGATAGTTT
Statistics
Matches: 27, Mismatches: 9, Indels: 6
0.64 0.21 0.14
Matches are distributed among these distances:
18 2 0.07
19 11 0.41
20 12 0.44
21 2 0.07
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
AAGAAGATTTTATCTCGCTT
Found at i:11062365 original size:39 final size:39
Alignment explanation
Indices: 11062302--11062936 Score: 936
Period size: 39 Copynumber: 16.3 Consensus size: 39
11062292 TTGTTTTTAA
* * * *
11062302 AGAAGATTATACCTCGGTTGAGATAGTTTCACTCG-AAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* ** *
11062340 AAGAAGATTTTATCTCGCTTAAGATAGTTTCATTCGAAAA
1 -AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* **
11062380 AAAAGATTTTATCTCGCTTGAGATAGTTTCAATCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
11062419 AAAAGATTTTATCTCGTTTGAGATAGTTTCACTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
11062458 AGAAGA-TTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
11062496 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
11062535 AGAAGATTTTATGTGGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
11062574 AGAAGATTTTATCTCGCTTGAGATAGTTTCACTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
11062613 AGAATATTTTATCTCGCTTGAGATAGTTTCACTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
11062652 AGAAGATTTTATTTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
11062691 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
11062730 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
11062769 AAAAGATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAAT
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
11062808 AGAAGATTTTATCTCGCTTGAGATAGTTTCTCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
*
11062847 -GTAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
1 AG-AAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
11062886 ATATGATTTTATCTCGCTTGAGATAGTTTCTCTCGAAAC
1 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
11062925 -GAAAGATTTTAT
1 AG-AAGATTTTAT
11062937 AAGAAACTAA
Statistics
Matches: 545, Mismatches: 46, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
38 37 0.07
39 506 0.93
40 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (39 bp):
AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:11063255 original size:20 final size:20
Alignment explanation
Indices: 11063230--11063307 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
11063220 TTTTTTAATG
11063230 AGTAAGTCCTTCGAGCCATC
1 AGTAAGTCCTTCGAGCCATC
* *
11063250 AGTAAGTCTTTCGAG-CATGAT
1 AGTAAGTCCTTCGAGCCAT--C
*
11063271 ACGTAAGTCCTTCGGGCCATC
1 A-GTAAGTCCTTCGAGCCATC
*
11063292 TA-TAAGTCTTTCGAGC
1 -AGTAAGTCCTTCGAGC
11063308 AAGATGATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
19 3 0.07
20 26 0.57
21 1 0.02
22 13 0.28
23 3 0.07
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (20 bp):
AGTAAGTCCTTCGAGCCATC
Found at i:11063279 original size:22 final size:21
Alignment explanation
Indices: 11063250--11063325 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 21
11063240 TCGAGCCATC
11063250 AGTAAGTCTTTCGAGCATGAT
1 AGTAAGTCTTTCGAGCATGAT
* * *
11063271 ACGTAAGTCCTTCGGGCCAT-CT
1 A-GTAAGTCTTTCGAG-CATGAT
*
11063293 A-TAAGTCTTTCGAGCAAGAT
1 AGTAAGTCTTTCGAGCATGAT
11063313 -GATAAGTCTTTCG
1 AG-TAAGTCTTTCG
11063326 GGCCATCCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 2 0.05
20 12 0.28
21 12 0.28
22 14 0.33
23 3 0.07
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (21 bp):
AGTAAGTCTTTCGAGCATGAT
Found at i:11063331 original size:41 final size:41
Alignment explanation
Indices: 11063227--11063337 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 41
11063217 GGGTTTTTTA
* *
11063227 ATGAGTAAGTCCTTCGAGCCATCAGTAAGTCTTTCGAGCATG
1 ATGAGTAAGTCCTTCGGGCCATCA-TAAGTCTTTCGAGCAAG
11063269 AT-ACGTAAGTCCTTCGGGCCATCTATAAGTCTTTCGAGCAAG
1 ATGA-GTAAGTCCTTCGGGCCATC-ATAAGTCTTTCGAGCAAG
*
11063311 ATGA-TAAGTCTTTCGGGCCATCCATAA
1 ATGAGTAAGTCCTTCGGGCCAT-CATAA
11063338 CACCCTCGGG
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
41 21 0.34
42 39 0.63
43 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (41 bp):
ATGAGTAAGTCCTTCGGGCCATCATAAGTCTTTCGAGCAAG
Found at i:11064228 original size:133 final size:133
Alignment explanation
Indices: 11063990--11064271 Score: 465
Period size: 133 Copynumber: 2.1 Consensus size: 133
11063980 TTTGCTAGAA
* *
11063990 TCTATCACAGAAGGAGGTAGATCAGCACCAACATCTCATTCGATTCCATCACAGAAGGAGGTGGA
1 TCTATCACAGAAGGAGGTAGACCAGCACCAACATCTCATTCGATTCCATCACAAAAGGAGGTGGA
* * * * *
11064055 TCGACATTTTTATTTTCGCTCAAATCCATCGCAGAAGGAGTTGGATTAGTGTTAACTTTTATCTC
66 TCGACATTTTTATTTTCGCTCAAATCCATCCCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTC
11064120 GAT
131 GAT
* * * *
11064123 TCTATCATAAAAGGAGGTAGACCAGCACCAACATCTCATTCGATTCCATCACAAAATGAGTTGGA
1 TCTATCACAGAAGGAGGTAGACCAGCACCAACATCTCATTCGATTCCATCACAAAAGGAGGTGGA
11064188 TCGACATTTTTATTTTCGCTCAAATCCATCCCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTC
66 TCGACATTTTTATTTTCGCTCAAATCCATCCCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTC
11064253 GAT
131 GAT
11064256 TCTATCACAGAAGGAG
1 TCTATCACAGAAGGAG
11064272 AAGTAGTTGG
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 136 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (133 bp):
TCTATCACAGAAGGAGGTAGACCAGCACCAACATCTCATTCGATTCCATCACAAAAGGAGGTGGA
TCGACATTTTTATTTTCGCTCAAATCCATCCCAGAAGGAGTTGGATCAGCGTCAACTTTTAGCTC
GAT
Found at i:11064280 original size:50 final size:50
Alignment explanation
Indices: 11064220--11064321 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
11064210 AATCCATCCC
11064220 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGG
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGG
*
11064270 AGAAGTAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGG
1 AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGG
11064320 AG
1 AG
11064322 GTGGATCGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (50 bp):
AGAAGGAGTTGGATCAGCGTCAACTTTTAGCTCGATTCTATCACAGAAGG
Found at i:11070693 original size:15 final size:15
Alignment explanation
Indices: 11070673--11070705 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
11070663 TGAGACATTA
*
11070673 CCCGCCCCGCATCCG
1 CCCGCCCCACATCCG
11070688 CCCGCCCCACATCCG
1 CCCGCCCCACATCCG
11070703 CCC
1 CCC
11070706 ACCCAACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.70, G:0.15, T:0.06
Consensus pattern (15 bp):
CCCGCCCCACATCCG
Found at i:11073867 original size:18 final size:18
Alignment explanation
Indices: 11073844--11073889 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
11073834 AGGCATTTGA
* *
11073844 TCCTCTGGTTGTGCTTGT
1 TCCTCTGCTCGTGCTTGT
11073862 TCCTCTGCTCGTGCTTGT
1 TCCTCTGCTCGTGCTTGT
11073880 TCCTCGTGCT
1 TCCTC-TGCT
11073890 GTTTTGGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.00, C:0.30, G:0.24, T:0.46
Consensus pattern (18 bp):
TCCTCTGCTCGTGCTTGT
Found at i:11075475 original size:21 final size:21
Alignment explanation
Indices: 11075451--11075491 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11075441 CCAGAACCTC
*
11075451 CAGGGGGTATCGATTCCCCTA
1 CAGGGGGAATCGATTCCCCTA
*
11075472 CAGGGGGAATCGGTTCCCCT
1 CAGGGGGAATCGATTCCCCT
11075492 TCAAATGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (21 bp):
CAGGGGGAATCGATTCCCCTA
Found at i:11075504 original size:23 final size:23
Alignment explanation
Indices: 11075475--11075518 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
11075465 TCCCCTACAG
*
11075475 GGGGAATCGGTTCCCCTTCAAAT
1 GGGGAATCAGTTCCCCTTCAAAT
11075498 GGGGAATCAGTTCCCCTTCAA
1 GGGGAATCAGTTCCCCTTCAA
11075519 GGGGGGGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (23 bp):
GGGGAATCAGTTCCCCTTCAAAT
Found at i:11075524 original size:23 final size:23
Alignment explanation
Indices: 11075473--11075524 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
11075463 ATTCCCCTAC
*
11075473 AGGGGGAATCGGTTCCCCTTCAA
1 AGGGGGAATCAGTTCCCCTTCAA
*
11075496 ATGGGGAATCAGTTCCCCTTCAA
1 AGGGGGAATCAGTTCCCCTTCAA
*
11075519 GGGGGG
1 AGGGGG
11075525 GTATCGATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.23, G:0.35, T:0.21
Consensus pattern (23 bp):
AGGGGGAATCAGTTCCCCTTCAA
Found at i:11081781 original size:21 final size:22
Alignment explanation
Indices: 11081757--11081803 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
11081747 CAATATATAT
* *
11081757 ATATATA-TATAGTTTTTGAAG
1 ATATATAGTATAGTTTTCGAAA
11081778 ATATATAGTATAGTTTTCGAAA
1 ATATATAGTATAGTTTTCGAAA
11081800 ATAT
1 ATAT
11081804 TTTTTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (22 bp):
ATATATAGTATAGTTTTCGAAA
Found at i:11081828 original size:37 final size:36
Alignment explanation
Indices: 11081778--11082167 Score: 232
Period size: 37 Copynumber: 10.1 Consensus size: 36
11081768 GTTTTTGAAG
11081778 ATAT-ATAGTATAGTTTTCGAAAATATTTTTTGAAAAC
1 ATATAATA-TATAGTTTT-GAAAATATTTTTTGAAAAC
* * *
11081815 ATATAATATATAGTTATTTTTAAAA-ATCGGGTTTTGAATATAT
1 ATATAATATATAG---TTTTGAAAATAT---TTTTTGAA-A-AC
* * * *
11081858 ATATATATATAATATGGTTTTGAAGACAGTTTTTAAAAAC
1 ATATA-ATAT-ATA--GTTTTGAAAATATTTTTTGAAAAC
* * * *
11081898 ATATAATATATAATTGTGAAAACAAATTTTTGAAAAC
1 ATATAATATATAGTTTTGAAAA-TATTTTTTGAAAAC
*
11081935 ATATATAATATATAGTTTTGAAAA-ATCGGTTTTGGAAAAC
1 --ATATAATATATAGTTTTGAAAATAT---TTTTTGAAAAC
* * *
11081975 ATATAATATATAATTTTTAAAATA-TTTTTGAAAAT
1 ATATAATATATAGTTTTGAAAATATTTTTTGAAAAC
* *
11082010 GTATATATAATATAGTTTTTGAAAACGTATTTTTTTAAAAC
1 ATATA-AT-ATATAG-TTTTGAAAA--TATTTTTTGAAAAC
** *
11082051 ATATAATATATAGTTTTTTTTAGATA-TTTTTGAAAAC
1 ATATAATATATAG--TTTTGAAAATATTTTTTGAAAAC
* * ** *
11082088 ATATAGTATATAGTTTTTAAAATGGTTTTTGAAAAT
1 ATATAATATATAGTTTTGAAAATATTTTTTGAAAAC
* *
11082124 GTATAATATATAGTTTTTAAAAATTATTTTTTGGAAAAC
1 ATATAATATATAG-TTTTGAAAA-TATTTTTT-GAAAAC
11082163 ATATA
1 ATATA
11082168 GCTTTCAAAA
Statistics
Matches: 276, Mismatches: 45, Indels: 62
0.72 0.12 0.16
Matches are distributed among these distances:
35 21 0.08
36 30 0.11
37 56 0.20
38 44 0.16
39 44 0.16
40 31 0.11
41 21 0.08
42 7 0.03
43 6 0.02
44 11 0.04
45 4 0.01
47 1 0.00
ACGTcount: A:0.42, C:0.03, G:0.10, T:0.44
Consensus pattern (36 bp):
ATATAATATATAGTTTTGAAAATATTTTTTGAAAAC
Found at i:11081981 original size:77 final size:76
Alignment explanation
Indices: 11081914--11082167 Score: 166
Period size: 75 Copynumber: 3.3 Consensus size: 76
11081904 TATATAATTG
11081914 TGAAAACAAATTTTTGAAAACATATATA-ATATATAG-TTTTGAAAAATCGGTTTTGGAAAACAT
1 TGAAAA-AAATTTTTGAAAACATATATATA-ATATAGTTTTTGAAAAATCGGTTTTGGAAAACAT
11081977 ATAATATATAATT
64 ATAATATATAATT
** * ** * **
11081990 TTTAAAATATTTTTGAAAATGTATATATAATATAGTTTTTG-AAAA-CGTATTTTTTTAAAACAT
1 TGAAAAAAATTTTTGAAAACATATATATAATATAGTTTTTGAAAAATCG--GTTTTGGAAAACAT
*
11082053 ATAATATATAGTTTT
64 ATAATATATA--ATT
*** * * * * **
11082068 TTTTAGATATTTTTGAAAACATATA-GT-ATATAGTTTTT--AAAAT-GGTTTTTGAAAATGTAT
1 TGAAAAAAATTTTTGAAAACATATATATAATATAGTTTTTGAAAAATCGGTTTTGGAAAACATAT
*
11082128 AATATATAGTTT
66 AATATATA-ATT
* *
11082140 TTAAAAATTATTTTTTGGAAAACATATA
1 TGAAAAA--AATTTTT-GAAAACATATA
11082168 GCTTTCAAAA
Statistics
Matches: 144, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
72 7 0.05
73 20 0.14
74 7 0.05
75 44 0.31
76 42 0.29
77 1 0.01
78 23 0.16
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (76 bp):
TGAAAAAAATTTTTGAAAACATATATATAATATAGTTTTTGAAAAATCGGTTTTGGAAAACATAT
AATATATAATT
Found at i:11082184 original size:32 final size:32
Alignment explanation
Indices: 11082131--11082192 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
11082121 AATGTATAAT
* *
11082131 ATATAGTTTTTAAAAATTATTTTTTGGAAAAC
1 ATATAGCTTTCAAAAATTATTTTTTGGAAAAC
*
11082163 ATATAGCTTTCAAAACA-TATTTTTTTGAAA
1 ATATAGCTTTCAAAA-ATTATTTTTTGGAAA
11082193 TATATACATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.45
Consensus pattern (32 bp):
ATATAGCTTTCAAAAATTATTTTTTGGAAAAC
Found at i:11082240 original size:18 final size:19
Alignment explanation
Indices: 11082206--11082246 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
11082196 ATACATATTA
11082206 TTTTATTTTATGTTTT-AT
1 TTTTATTTTATGTTTTAAT
*
11082224 TTTTA-TTTATTTATTTAAT
1 TTTTATTTTATGT-TTTAAT
11082243 TTTT
1 TTTT
11082247 TAGGTCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 6 0.30
18 8 0.40
19 6 0.30
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTATTTTATGTTTTAAT
Found at i:11082248 original size:12 final size:12
Alignment explanation
Indices: 11082201--11082248 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
11082191 AATATATACA
11082201 TATTATTTTATTT
1 TATT-TTTTATTT
*
11082214 TATGTTTTATTTT
1 TATTTTTTA-TTT
11082227 TATTTATTTATTT
1 TATTT-TTTATTT
*
11082240 AATTTTTTA
1 TATTTTTTA
11082249 GGTCCAATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 9 0.30
13 17 0.57
14 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:11087053 original size:25 final size:25
Alignment explanation
Indices: 11086973--11087054 Score: 61
Period size: 25 Copynumber: 3.4 Consensus size: 25
11086963 TGTCTTACCA
*
11086973 TTTATCCCATAAGCTCGTAAGCTTAT
1 TTTA-CCCATAAGCTCGTAAGCCTAT
*
11086999 TTTACCAATATA-CT--T-A-CC-AT
1 TTTACCCATA-AGCTCGTAAGCCTAT
11087019 TTAATA-CCATAAGCTCGTAAGCCTAT
1 TT--TACCCATAAGCTCGTAAGCCTAT
11087045 TTTACCCATA
1 TTTACCCATA
11087055 TACTTGCCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 21
0.64 0.04 0.31
Matches are distributed among these distances:
20 5 0.12
21 7 0.16
22 3 0.07
23 2 0.05
24 3 0.07
25 14 0.33
26 9 0.21
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (25 bp):
TTTACCCATAAGCTCGTAAGCCTAT
Found at i:11087090 original size:44 final size:45
Alignment explanation
Indices: 11086966--11087091 Score: 182
Period size: 46 Copynumber: 2.8 Consensus size: 45
11086956 ATAAAAATGT
*
11086966 CTTACCATTTATCCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
11087011 CTTACCATTTAATACCATAAGCTCGTAAGCCTATTTTACCCATATA
1 CTTACCATTT-ATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
11087057 CTTGCCA-TTATTCCATAAGCTCGTGAGCTTATTTT
1 CTTACCATTTATACCATAAGCTCGTAAGCTTATTTT
11087092 CATTCTTACC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.32
45 12 0.16
46 38 0.52
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (45 bp):
CTTACCATTTATACCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:11087141 original size:14 final size:14
Alignment explanation
Indices: 11087118--11087147 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11087108 TAAGCAATAA
11087118 ACCATATACCATAG
1 ACCATATACCATAG
*
11087132 ACCATTTACCATAG
1 ACCATATACCATAG
11087146 AC
1 AC
11087148 AATAGCCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.30, G:0.07, T:0.23
Consensus pattern (14 bp):
ACCATATACCATAG
Found at i:11098458 original size:14 final size:14
Alignment explanation
Indices: 11098439--11098465 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11098429 GCTTATTTAG
11098439 TATATATAATAATA
1 TATATATAATAATA
11098453 TATATATAATAAT
1 TATATATAATAAT
11098466 TTCAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TATATATAATAATA
Found at i:11098524 original size:22 final size:21
Alignment explanation
Indices: 11098480--11098524 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
11098470 AAAATATCCA
** *
11098480 ATATATATAGTTTTTGAAGAT
1 ATATATATAGTTTTCAAAAAT
11098501 ATATAGTATAGTTTTCAAAAAT
1 ATATA-TATAGTTTTCAAAAAT
11098523 AT
1 AT
11098525 TTTTTGAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.44
Consensus pattern (21 bp):
ATATATATAGTTTTCAAAAAT
Found at i:11098549 original size:37 final size:37
Alignment explanation
Indices: 11098486--11098991 Score: 338
Period size: 37 Copynumber: 13.1 Consensus size: 37
11098476 TCCAATATAT
* *
11098486 ATAGTTTTTG--AAGATAT-ATAGTATAGTTTTCAAAA
1 ATAGTTTTTGAAAACATATAATA-TATAGTTTTTAAAA
* *
11098521 ATATTTTTTGAAAACATATAAAATATAGTTTTTAAAA
1 ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
* * * *
11098558 AT-GGTTTTGAAAACATATGATATAAAGGTTTTAAAA
1 ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
* *
11098594 GACAGTTTTTGAAAATATATAATATATAGTTTTTTAAAA
1 -ATAGTTTTTGAAAACATATAATATATAG-TTTTTAAAA
*
11098633 A-AGTTTTTGAAAGA-ACATAATATATAGTTTTTTTAAAAAAA
1 ATAGTTTTTGAAA-ACATATAATATATAG--TTTTT---AAAA
* *
11098674 ATCA-TATTTTGAAAATATATATATATATA-TATATATAATATGGTTTTGAAG
1 AT-AGT-TTTTGAAAACATATA-ATATATAGT-T-T-T--TA--------AAA
* *
11098725 ACAGTTTTTGAAAACATATAATATATAGTTTTGAAAA
1 ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
* *
11098762 CAT--TTTTTGAAAACATATATAATATATATATTTTTTAAA
1 -ATAGTTTTTGAAAAC--ATATAATATATA-GTTTTTAAAA
* * *
11098801 ATCGGTTTTGCAAAACATATAATATGTAGTTTTT-AAA
1 ATAGTTTTTG-AAAACATATAATATATAGTTTTTAAAA
*
11098838 ATA-TTTTTGAAAACGTATATATAATATAGTTTTTGAAAA
1 ATAGTTTTTGAAAACATATA-AT-ATATAGTTTTT-AAAA
** *
11098877 TGTATTTTTTTTGAAAATATATAATATATAGTTTTTTAAAA
1 ---ATAGTTTTTGAAAACATATAATATATAG-TTTTTAAAA
* *
11098918 ATA-TTTTTGAAAACATATAGTAAATAGTTTTT-AAA
1 ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
*
11098953 ATGGTTTTTGAAAACATATAATATATAGTTTTTAAAA
1 ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
11098990 AT
1 AT
11098992 GATTTTTTTT
Statistics
Matches: 378, Mismatches: 44, Indels: 96
0.73 0.08 0.19
Matches are distributed among these distances:
35 23 0.06
36 78 0.21
37 88 0.23
38 53 0.14
39 29 0.08
40 5 0.01
41 21 0.06
42 12 0.03
43 29 0.08
44 8 0.02
45 1 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 8 0.02
50 16 0.04
51 4 0.01
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (37 bp):
ATAGTTTTTGAAAACATATAATATATAGTTTTTAAAA
Found at i:11098771 original size:13 final size:13
Alignment explanation
Indices: 11098753--11098777 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11098743 TAATATATAG
11098753 TTTTGAAAACATT
1 TTTTGAAAACATT
11098766 TTTTGAAAACAT
1 TTTTGAAAACAT
11098778 ATATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTTGAAAACATT
Found at i:11098992 original size:37 final size:36
Alignment explanation
Indices: 11098729--11098998 Score: 267
Period size: 36 Copynumber: 7.1 Consensus size: 36
11098719 TTGAAGACAG
*
11098729 TTTTTGAAAACATATAATATATAGTTTTGAAAACAT-
1 TTTTTGAAAACATATAATATATAGTTTTTAAAA-ATA
* * *
11098765 TTTTTGAAAACATATATAATATATATATTTTTTAAAATCG
1 TTTTTGAAAAC--ATATAATATATA-GTTTTTAAAAAT-A
* *
11098805 GTTTTGCAAAACATATAATATGTAGTTTTT-AAAATA
1 TTTTTG-AAAACATATAATATATAGTTTTTAAAAATA
* *
11098841 TTTTTGAAAACGTATATATAATATAGTTTTTGAAAATGTATTT
1 TTTTTGAAAACATATA-AT-ATATAGTTTTT-AAAA---A-TA
*
11098884 TTTTTGAAAATATATAATATATAGTTTTTTAAAAATA
1 TTTTTGAAAACATATAATATATAG-TTTTTAAAAATA
* * *
11098921 TTTTTGAAAACATATAGTAAATAGTTTTT-AAAATGG
1 TTTTTGAAAACATATAATATATAGTTTTTAAAAAT-A
11098957 TTTTTGAAAACATATAATATATAGTTTTTAAAAATGA
1 TTTTTGAAAACATATAATATATAGTTTTTAAAAAT-A
11098994 TTTTT
1 TTTTT
11098999 TTTGGAAAAC
Statistics
Matches: 196, Mismatches: 21, Indels: 33
0.78 0.08 0.13
Matches are distributed among these distances:
35 14 0.07
36 50 0.26
37 48 0.24
38 20 0.10
39 21 0.11
40 5 0.03
41 15 0.08
42 8 0.04
43 15 0.08
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.46
Consensus pattern (36 bp):
TTTTTGAAAACATATAATATATAGTTTTTAAAAATA
Found at i:11099106 original size:24 final size:23
Alignment explanation
Indices: 11099052--11099106 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
11099042 TACATAATAT
*
11099052 TTTATTTTATTTTCTATTTTCTA
1 TTTAATTTATTTTCTATTTTCTA
* *
11099075 TTTTATTTATTTATTTATTTAT-TA
1 TTTAATTTATTT-TCTATTT-TCTA
11099099 TTTAATTT
1 TTTAATTT
11099107 TTAGGTCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 10 0.38
24 15 0.58
25 1 0.04
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTAATTTATTTTCTATTTTCTA
Found at i:11107490 original size:19 final size:19
Alignment explanation
Indices: 11107466--11107512 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 19
11107456 TTCATGTTAT
11107466 CGATACCCTTCTATGGTAC
1 CGATACCCTTCTATGGTAC
11107485 CGATACTCCCCTTCTATGGTAC
1 CGATA---CCCTTCTATGGTAC
11107507 CGATAC
1 CGATAC
11107513 TCCCTTACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 6 0.24
22 19 0.76
ACGTcount: A:0.21, C:0.34, G:0.15, T:0.30
Consensus pattern (19 bp):
CGATACCCTTCTATGGTAC
Found at i:11107498 original size:22 final size:22
Alignment explanation
Indices: 11107471--11107516 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
11107461 GTTATCGATA
11107471 CCCTTCTATGGTACCGATACTC
1 CCCTTCTATGGTACCGATACTC
11107493 CCCTTCTATGGTACCGATACTC
1 CCCTTCTATGGTACCGATACTC
11107515 CC
1 CC
11107517 TTACGGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.39, G:0.13, T:0.30
Consensus pattern (22 bp):
CCCTTCTATGGTACCGATACTC
Found at i:11107530 original size:94 final size:96
Alignment explanation
Indices: 11107408--11107587 Score: 249
Period size: 94 Copynumber: 1.9 Consensus size: 96
11107398 TCAACACTGG
* * *
11107408 GGTACCGATACCCCTTCCTGGTATCGATACCAAAATTAGGTTCGATGTTT-CATGTTATCGATAC
1 GGTACCGATACCCCTTACTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATAC
11107472 CCTTCT-ATGGTACCGATACTCCCCTTCTAT
66 CCTTCTAATGGTACCGATACTCCCCTTCTAT
** * *
11107502 GGTACCGATACTCCCTTAC-GGTATCGATACTGAAATTAGATTTGATGTTTGCTTGGTATCGATA
1 GGTACCGATAC-CCCTTACTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATA
* *
11107566 CCCTTTTAATGGTATCGATACT
65 CCCTTCTAATGGTACCGATACT
11107588 ACCTCAATGG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 38 0.51
95 23 0.31
96 13 0.18
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (96 bp):
GGTACCGATACCCCTTACTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATAC
CCTTCTAATGGTACCGATACTCCCCTTCTAT
Found at i:11113253 original size:79 final size:79
Alignment explanation
Indices: 11113152--11113427 Score: 417
Period size: 79 Copynumber: 3.5 Consensus size: 79
11113142 GTAAAATATA
* ** * * * * *
11113152 CTTTTATGCTGATAATACACCCATATGCATTTCAACAATGACATCTTTTCATGTCAATAATGCAC
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAATAATGCAC
*
11113217 CCATATACATTATT
66 CCATATGCATTATT
* *
11113231 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCATCATTTCATGCCAATAATACAC
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAATAATGCAC
11113296 CCATATGCATTATT
66 CCATATGCATTATT
*
11113310 CTTTTATGCTGACAATGTACCCATATACATTTCAGTTATGACATCATTTCATGCCAATAATGCAC
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAATAATGCAC
*
11113375 CCATATGTATTATT
66 CCATATGCATTATT
* *
11113389 CTTTTATGTTGACAATGTACCCATATACATTTAAGCTAT
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTAT
11113428 TTTCAATTGT
Statistics
Matches: 179, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 179 1.00
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.37
Consensus pattern (79 bp):
CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:11113254 original size:34 final size:34
Alignment explanation
Indices: 11113210--11113340 Score: 100
Period size: 34 Copynumber: 3.5 Consensus size: 34
11113200 TCATGTCAAT
11113210 AATGCACCCATATACATTATTCTTTTATGCTGAC
1 AATGCACCCATATACATTATTCTTTTATGCTGAC
* ** *
11113244 AATGTACCCATATACATTTCAGCTATGGCATCATTTCATGCCAAT
1 AATGCACCCATATACA-TT-A--T-T--C-T--TTT-ATGCTGAC
* *
11113289 AATACACCCATATGCATTATTCTTTTATGCTGAC
1 AATGCACCCATATACATTATTCTTTTATGCTGAC
*
11113323 AATGTACCCATATACATT
1 AATGCACCCATATACATT
11113341 TCAGTTATGA
Statistics
Matches: 73, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
34 35 0.48
35 5 0.07
36 1 0.01
37 1 0.01
38 2 0.03
39 1 0.01
40 1 0.01
41 2 0.03
42 1 0.01
43 1 0.01
44 5 0.07
45 18 0.25
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (34 bp):
AATGCACCCATATACATTATTCTTTTATGCTGAC
Found at i:11113884 original size:22 final size:20
Alignment explanation
Indices: 11113833--11113885 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
11113823 TTGATTCCAA
* *
11113833 AGTATCGATACTACTACCCT
1 AGTACCGATACTACTACACT
* *
11113853 AGTACTGATACTTCTACACT
1 AGTACCGATACTACTACACT
11113873 AGGGTACCGATAC
1 A--GTACCGATAC
11113886 CCCTTCTTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 17 0.65
22 9 0.35
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (20 bp):
AGTACCGATACTACTACACT
Found at i:11113997 original size:95 final size:96
Alignment explanation
Indices: 11113875--11114056 Score: 262
Period size: 95 Copynumber: 1.9 Consensus size: 96
11113865 TCTACACTAG
* *
11113875 GGTACCGATACCCCTTCTTGGTATCGATACCAAAATTAGGTTCGATGTTT-CATGGTATCGATAC
1 GGTACCGATACCCCTTCTTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCAATAC
*
11113939 CC-TTTACATGGTATCGATACTAGCCTTCTAT
66 CCTTTTA-ATGGTATCAATACTAGCCTTCTAT
* * *
11113970 GGTACTGATACTCCCTT-TTGGTATCGATACCAAAATTATATTCGATGTTTGCTTGGTATCAATA
1 GGTACCGATAC-CCCTTCTTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCAATA
*
11114034 CCCTTTTAATTGTATCAATACTA
65 CCCTTTTAATGGTATCAATACTA
11114057 CCTCAACGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
95 41 0.53
96 32 0.42
97 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (96 bp):
GGTACCGATACCCCTTCTTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCAATAC
CCTTTTAATGGTATCAATACTAGCCTTCTAT
Found at i:11113998 original size:19 final size:22
Alignment explanation
Indices: 11113926--11113999 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 22
11113916 TCGATGTTTC
*
11113926 ATGGTATCGATAC--CCTTTAC-
1 ATGGTATCGATACTACCCTT-CT
*
11113946 ATGGTATCGATACTAGCCTTCT
1 ATGGTATCGATACTACCCTTCT
11113968 ATGGTA-CTGATACT-CCCTT-T
1 ATGGTATC-GATACTACCCTTCT
11113988 -TGGTATCGATAC
1 ATGGTATCGATAC
11114000 CAAAATTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
19 10 0.22
20 15 0.33
21 6 0.13
22 15 0.33
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (22 bp):
ATGGTATCGATACTACCCTTCT
Found at i:11116541 original size:103 final size:102
Alignment explanation
Indices: 11116288--11116564 Score: 287
Period size: 101 Copynumber: 2.7 Consensus size: 102
11116278 TCAAAAAGGG
* * *
11116288 AAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCACTTGAGACAATTTCC
1 AAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTG-GATAGTTTCC
* * *
11116353 CTTGAACCAAAAATTTTAAGATCATTTGACTCAAAAGA
65 CTTGAAACAAAAATTTGAAGATCATTTCACTCAAAAGA
** * *
11116391 AAAAAATTATCTCATTTGAGA-T-TTTTTCTTAAAACAAATTTCATCTCGCTTGGGATAGTTTCC
1 AAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTT-GGATAGTTTCC
* ** *
11116454 CTTGAAACACAGAATTTGAA-ATTGTTTCACT-AGAAA-C
65 CTTGAAACA-AAAATTTGAAGATCATTTCACTCA-AAAGA
* * * *
11116491 AAATTTTTATATCACTTGAGATTGTTTTTCGTAAAAACAAATTACGTCTCGCTT-GATACTGTTT
1 AAAATTTTATCTCACTTGAGATTGTTTTTC-TTAAAACAAATTTCGTCTCGCTTGGATA--GTTT
11116555 CCCTTGAAAC
63 CCCTTGAAAC
11116565 TATTTCACTC
Statistics
Matches: 144, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
100 17 0.12
101 59 0.41
102 16 0.11
103 52 0.36
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (102 bp):
AAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTGGATAGTTTCCC
TTGAAACAAAAATTTGAAGATCATTTCACTCAAAAGA
Found at i:11123519 original size:33 final size:33
Alignment explanation
Indices: 11123459--11123521 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
11123449 GTTTTTTCAC
*
11123459 TGTTCAAACAAAAATTGTATTGTTATTTTTAAT
1 TGTTCAAACAAAAATTGTATTGCTATTTTTAAT
* *
11123492 TGTTCGAACCAAAATTGTACTT-CTATTTTT
1 TGTTCAAACAAAAATTGTA-TTGCTATTTTT
11123522 TGAACCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.48
Consensus pattern (33 bp):
TGTTCAAACAAAAATTGTATTGCTATTTTTAAT
Found at i:11123522 original size:34 final size:32
Alignment explanation
Indices: 11123450--11123522 Score: 74
Period size: 33 Copynumber: 2.2 Consensus size: 32
11123440 TCTTTCTTTG
* *
11123450 TTTTTTCACTGTTCAAACAAAAATTGTATTGT
1 TTTTTTAACTGTTCAAACAAAAATTGTATTCT
* * *
11123482 TATTTTTAATTGTTCGAACCAAAATTGTACTTCT
1 T-TTTTTAACTGTTCAAACAAAAATTGTA-TTCT
11123516 ATTTTTT
1 -TTTTTT
11123523 GAACCAAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
32 1 0.03
33 23 0.70
34 8 0.24
35 1 0.03
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (32 bp):
TTTTTTAACTGTTCAAACAAAAATTGTATTCT
Found at i:11123527 original size:26 final size:26
Alignment explanation
Indices: 11123497--11123548 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11123487 TTAATTGTTC
* *
11123497 GAACCAAAATTGTACTTCTATTTTTT
1 GAACCAAAACTGTACTGCTATTTTTT
11123523 GAACCAAAACTGTACTGCTATTTTTT
1 GAACCAAAACTGTACTGCTATTTTTT
11123549 TACACTGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (26 bp):
GAACCAAAACTGTACTGCTATTTTTT
Found at i:11126518 original size:26 final size:26
Alignment explanation
Indices: 11126479--11126528 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11126469 TTAATTGTTC
* *
11126479 GAACCAAAATTGTACTTCTATTTTTT
1 GAACCAAAACTGTACTGCTATTTTTT
11126505 GAACCAAAACTGTACTGCTATTTT
1 GAACCAAAACTGTACTGCTATTTT
11126529 GTTTACACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (26 bp):
GAACCAAAACTGTACTGCTATTTTTT
Found at i:11126841 original size:6 final size:6
Alignment explanation
Indices: 11126812--11126885 Score: 51
Period size: 6 Copynumber: 11.3 Consensus size: 6
11126802 AAAATCAAAG
* *
11126812 AAAAAT AAAAA- AAAAAT CAGAAAAAT AAAATT GAAAAT AAAAAT AAAAATT
1 AAAAAT AAAAAT AAAAAT ---AAAAAT AAAAAT AAAAAT AAAAAT AAAAA-T
*
11126863 GAACAAAT GGAAAAT AAAAAT AA
1 -AA-AAAT -AAAAAT AAAAAT AA
11126886 TAATGGGTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
5 5 0.09
6 31 0.56
7 5 0.09
8 5 0.09
9 9 0.16
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:11132509 original size:118 final size:116
Alignment explanation
Indices: 11132351--11132798 Score: 519
Period size: 118 Copynumber: 3.8 Consensus size: 116
11132341 CATTATGTGA
* *
11132351 TGGAATCGAGCTAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCTTCATCAGATGAGTT
1 TGGAATCGAGCTAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTT
11132416 CTTCTCATTACGAACCCTTACATTGGAAATGTTGATCCACCTCCTTCTATGG
66 CTTCTCATTACGAACCCTT-CATTGGAAATGTTGATCCACCTCCTTCTATGG
* * * **
11132468 TAGAATCAAGCTAAGGTTGAATAAGTTATTCTCATTATGAACTT-TATCTCCCTCATCGGATTCG
1 TGGAATCGAGCT-AGGTTGAATAAGTTCTTCTCATTATGAACTTCT-TCTCCCTCATCGGATGAG
* * * *
11132532 TTCTTCTCATTACGATCCCTTCTATTGGAAATATTGATCCACCTCCTTCTGTGA
64 TTCTTCTCATTACGAACCCTTC-ATTGGAAATGTTGATCCACCTCCTTCTATGG
* * *
11132586 TGGAATCGAGCTAAGGTTAAATAAGTTCTTCTCATTATGAACTTATTCTCCCTCATTGGATGAGT
1 TGGAATCGAGCT-AGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGT
* * * * * *
11132651 TATTCTTATTACAAACCTTTCCATTGGATATGTTGATCCACCT--TTTTATGTG
65 TCTTCTCATTACGAACCCTT-CATTGGAAATGTTGATCCACCTCCTTCTATG-G
* * * * * * *
11132703 ATGGAATCGAGCT--TTTGAACAAGTTCTTATCATTATTAACTTCTTCTTCCTCGTTGGATGAGT
1 -TGGAATCGAGCTAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGT
* * *
11132766 TCTTCTAATTACGAACCCTTCCTTAGAAATGTT
65 TCTTCTCATTACGAACCCTTCATTGGAAATGTT
11132799 TGGTCCATCT
Statistics
Matches: 281, Mismatches: 43, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
114 10 0.04
115 58 0.21
116 5 0.02
117 12 0.04
118 194 0.69
119 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (116 bp):
TGGAATCGAGCTAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTT
CTTCTCATTACGAACCCTTCATTGGAAATGTTGATCCACCTCCTTCTATGG
Found at i:11139993 original size:18 final size:18
Alignment explanation
Indices: 11139947--11139989 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
11139937 TCTTCTTATT
11139947 TTTACTTTAATTACTTTTA
1 TTTA-TTTAATTACTTTTA
*
11139966 TTTATTTAATTGCTTTTA
1 TTTATTTAATTACTTTTA
11139984 -TTATTT
1 TTTATTT
11139990 TAATATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 13 0.57
19 4 0.17
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTTAATTACTTTTA
Found at i:11148206 original size:79 final size:79
Alignment explanation
Indices: 11148105--11148380 Score: 403
Period size: 79 Copynumber: 3.5 Consensus size: 79
11148095 GTAAAATATA
* * * * * * * *
11148105 CTTTTATGTTGATAATGCACCCATATGCATTTCAAC-ATTTACATCTTTTCAAGTCAATAATGCA
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTA-TGACATCTTTTCATGCCAATAATGCA
*
11148169 CCCATATACATTATT
65 CCCATATGCATTATT
* *
11148184 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGGCAT-TCTTTCATGCCAATAATACA
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCT-TTTCATGCCAATAATGCA
11148248 CCCATATGCATTATT
65 CCCATATGCATTATT
*
11148263 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAATAATGCAC
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCTTTTCATGCCAATAATGCAC
*
11148328 CCATATGTATTATT
66 CCATATGCATTATT
11148342 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTAT
1 CTTTTATGCTGACAATGTACCCATATACATTTCAGCTAT
11148381 TTTCAATTGT
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
78 1 0.01
79 177 0.99
80 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (79 bp):
CTTTTATGCTGACAATGTACCCATATACATTTCAGCTATGACATCTTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:11148207 original size:34 final size:34
Alignment explanation
Indices: 11148163--11148372 Score: 105
Period size: 34 Copynumber: 5.5 Consensus size: 34
11148153 TCAAGTCAAT
11148163 AATGCACCCATATACATTATTCTTTTATGCTGAC
1 AATGCACCCATATACATTATTCTTTTATGCTGAC
* ** *
11148197 AATGTACCCATATACATTTCAGCTATGGCATTCTTTCATGCCAAT
1 AATGCACCCATATACA-TT-A--T-T--C--T-TTT-ATGCTGAC
* *
11148242 AATACACCCATATGCATTATTCTTTTATGCTGAC
1 AATGCACCCATATACATTATTCTTTTATGCTGAC
* ** *
11148276 AATGTACCCATATACATTTCAGCTATGACATCATTTCATGCCAAT
1 AATGCACCCATATACA-TT-A--T-T--C-T--TTT-ATGCTGAC
**
11148321 AATGCACCCATATGTATTATTCTTTTATGCTGAC
1 AATGCACCCATATACATTATTCTTTTATGCTGAC
*
11148355 AATGTACCCATATACATT
1 AATGCACCCATATACATT
11148373 TCAGCTATTT
Statistics
Matches: 129, Mismatches: 25, Indels: 44
0.65 0.13 0.22
Matches are distributed among these distances:
34 53 0.41
35 10 0.08
36 3 0.02
37 1 0.01
38 4 0.03
39 2 0.02
40 2 0.02
41 4 0.03
42 1 0.01
43 3 0.02
44 10 0.08
45 36 0.28
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (34 bp):
AATGCACCCATATACATTATTCTTTTATGCTGAC
Found at i:11148950 original size:95 final size:96
Alignment explanation
Indices: 11148828--11149009 Score: 262
Period size: 95 Copynumber: 1.9 Consensus size: 96
11148818 TCTACACTAG
*
11148828 GGTACCGATACCCCTTCCTGGTATCGATACCAAAATTAGGTTCGATGTTT-CATGGTATCGATAC
1 GGTACCGATACCCCTTCCTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATAC
11148892 CC-TTTACATGGTATCGATACTAGCCTTCTAT
66 CCTTTTA-ATGGTATCGATACTAGCCTTCTAT
* * * * *
11148923 GGTACTGATACTCCCTT-TTGGTATCGATATCGAAATTAGATTCGATGTTTGCTTGGTATCGATA
1 GGTACCGATAC-CCCTTCCTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATA
*
11148987 CCCTTTTAATTGTATCGATACTA
65 CCCTTTTAATGGTATCGATACTA
11149010 CCTCAACGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
95 39 0.51
96 34 0.44
97 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (96 bp):
GGTACCGATACCCCTTCCTGGTATCGATACCAAAATTAGATTCGATGTTTGCATGGTATCGATAC
CCTTTTAATGGTATCGATACTAGCCTTCTAT
Found at i:11148951 original size:19 final size:22
Alignment explanation
Indices: 11148879--11148951 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 22
11148869 TCGATGTTTC
*
11148879 ATGGTATCGATAC--CCTTTAC-
1 ATGGTATCGATACTACCCTT-CT
*
11148899 ATGGTATCGATACTAGCCTTCT
1 ATGGTATCGATACTACCCTTCT
11148921 ATGGTA-CTGATACT-CCCTT-T
1 ATGGTATC-GATACTACCCTTCT
11148941 -TGGTATCGATA
1 ATGGTATCGATA
11148952 TCGAAATTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
19 9 0.20
20 15 0.33
21 6 0.13
22 15 0.33
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (22 bp):
ATGGTATCGATACTACCCTTCT
Found at i:11151704 original size:188 final size:186
Alignment explanation
Indices: 11151349--11151710 Score: 500
Period size: 188 Copynumber: 1.9 Consensus size: 186
11151339 GACTCAAAAG
* * * *
11151349 AAAAAAATTATCTCACTTGAGATTTTTTCTTAAAACAAATTTCATCTCGCTTGGGATAGTTTCCC
1 AAAAAAACTATCTCACTTGAGATTTTTTCTTAAAACAAATTTCATCTCGCTTGAGACAATTTCCC
* *
11151414 TTGAAACACAAAATTTGAAATTGTTTCACTAGAAACAAATTTTTATATCACTTGAGATTGTTTTT
66 TTGAAACACAAAATTTGAAATTCTTTCACTAGAAACAAATTTTTATATAACTTGAGATTGTTTTT
* *
11151479 CTTAAAAACAATTATGTCTCGCTTGATACAATTTCCCTTGAAACTATTTCACTCAA
131 CTTAAAAACAATTATATCTCGCTTGAGACAATTTCCCTTGAAACTATTTCACTCAA
* *
11151535 AAAAAAACTATCTCACTTGATATTGTTTTGCTTAAAACAAATTTCGTCTCGCTTGAGACAATTTC
1 AAAAAAACTATCTCACTTGAGATT-TTTT-CTTAAAACAAATTTCATCTCGCTTGAGACAATTTC
*
11151600 CCTTGAAACA-AAAATTTTGAAATTCTTTCACTCGAAGA-AAATTTTTATATAACTTGAGATT-T
64 CCTTGAAACACAAAA-TTTGAAATTCTTTCACTAGAA-ACAAATTTTTATATAACTTGAGATTGT
* * *
11151662 TTTCTCTTGAAATA-AATT-TCATCTCTCTTGAGACAGTTTCCCTTGAAAC
127 TTT-TCTT-AAAAACAATTAT-ATCTCGCTTGAGACAATTTCCCTTGAAAC
11151711 AGATATTTTA
Statistics
Matches: 155, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
186 22 0.14
187 13 0.08
188 115 0.74
189 5 0.03
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (186 bp):
AAAAAAACTATCTCACTTGAGATTTTTTCTTAAAACAAATTTCATCTCGCTTGAGACAATTTCCC
TTGAAACACAAAATTTGAAATTCTTTCACTAGAAACAAATTTTTATATAACTTGAGATTGTTTTT
CTTAAAAACAATTATATCTCGCTTGAGACAATTTCCCTTGAAACTATTTCACTCAA
Found at i:11158460 original size:26 final size:26
Alignment explanation
Indices: 11158430--11158481 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
11158420 TTAATTGTTC
*
11158430 GAACCAAAATTGTACTACTATTTTTT
1 GAACCAAAACTGTACTACTATTTTTT
*
11158456 GAACCAAAACTGTACTGCTATTTTTT
1 GAACCAAAACTGTACTACTATTTTTT
11158482 TACACTGCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (26 bp):
GAACCAAAACTGTACTACTATTTTTT
Found at i:11158824 original size:6 final size:6
Alignment explanation
Indices: 11158790--11158868 Score: 59
Period size: 6 Copynumber: 12.3 Consensus size: 6
11158780 AAAATCAAAG
* * * * *
11158790 AAAAAT AAAAAC AAAAAT AAATCAG AAAAAT AAAATT GAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAA-AAT AAAAAT AAAAAT AAAAAT AAAAAT
*
11158839 AAAAATT GAACAAAT GGAAAAT AAAAAT AA
1 AAAAA-T -AA-AAAT -AAAAAT AAAAAT AA
11158869 TAATGGGTTG
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
6 40 0.70
7 9 0.16
8 5 0.09
9 3 0.05
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:11164308 original size:40 final size:41
Alignment explanation
Indices: 11164253--11164351 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
11164243 ACATGTTAAC
* * *
11164253 CCAACTTCTTCTGTGATGCTTGA-CCTAAG-GTGATGCTGA-T
1 CCAACTTCTTATGTGATGCATGATCC-AAGACTGATGCT-ATT
*
11164293 CCAACTTCTTATGTGATGGATGATCCAAGACTGATGCTATT
1 CCAACTTCTTATGTGATGCATGATCCAAGACTGATGCTATT
*
11164334 CCAACTCCTTATGTGATG
1 CCAACTTCTTATGTGATG
11164352 GAATCGAGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 24 0.47
41 27 0.53
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.34
Consensus pattern (41 bp):
CCAACTTCTTATGTGATGCATGATCCAAGACTGATGCTATT
Found at i:11164549 original size:118 final size:116
Alignment explanation
Indices: 11164333--11164797 Score: 565
Period size: 118 Copynumber: 4.0 Consensus size: 116
11164323 CTGATGCTAT
* *
11164333 TCCAACTCCTTATGTGATGGAATCGAGCTAGGTTCAATAAGTTCTTCTCATTATGAACTTCTTCT
1 TCCACCTCCTTATGTGATGGAATCGAGCTAGGTTAAATAAGTTCTTCTCATTATGAACTTCTTCT
* * *
11164398 CCCTCAACAGATGAGTTATTCTCATTATAAACCCTTACATTGGAAATATTGA
66 CCCTCATCGGATGAGTTATTCTCATTACAAACCCTT-CATTGGAAATATTGA
* * * *
11164450 TCCACCTCCTTCTATGATGGAATCAAGCTAAGGTTAAATAAGTTATTCTCATTATGAACTTCTTC
1 TCCACCTCCTTATGTGATGGAATCGAGCT-AGGTTAAATAAGTTCTTCTCATTATGAACTTCTTC
* *
11164515 TCCCTCATCGGATGAGTTATTCTCATTACGAACCCTTCTATTGGAAATGTTGA
65 TCCCTCATCGGATGAGTTATTCTCATTACAAACCCTTC-ATTGGAAATATTGA
* *
11164568 TCCACCTCCTTCTGTGATGGAATCGAGCTAAGGTTAAATAAGTTCTTCTGATTATGAACTTCTTC
1 TCCACCTCCTTATGTGATGGAATCGAGCT-AGGTTAAATAAGTTCTTCTCATTATGAACTTCTTC
* * * * * *
11164633 TTCCTCATTGGATGAGTTATTCTTATTACAAACCTTTCCATTGGATATGTTGA
65 TCCCTCATCGGATGAGTTATTCTCATTACAAACCCTT-CATTGGAAATATTGA
* * * * * *
11164686 TCTACCTCTTTATGTGATGGAATCGAGCT--TTTGAACAAGTTCTTCTCATTATTAACTTCTTCT
1 TCCACCTCCTTATGTGATGGAATCGAGCTAGGTTAAATAAGTTCTTCTCATTATGAACTTCTTCT
* * * * * ** * *
11164749 TCCTCGTTGGATGAGTTCTTCTAATTATGAACCCTTCCTTAGAAATATT
66 CCCTCATCGGATGAGTTATTCTCATTACAAACCCTTCATTGGAAATATT
11164798 TGGTACATCT
Statistics
Matches: 306, Mismatches: 39, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
114 9 0.03
115 59 0.19
117 26 0.08
118 211 0.69
119 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (116 bp):
TCCACCTCCTTATGTGATGGAATCGAGCTAGGTTAAATAAGTTCTTCTCATTATGAACTTCTTCT
CCCTCATCGGATGAGTTATTCTCATTACAAACCCTTCATTGGAAATATTGA
Found at i:11190109 original size:41 final size:41
Alignment explanation
Indices: 11190052--11190133 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
11190042 CTATTAGTTA
11190052 GGGGGAGTTTATGATTCTTAGTGAAAATTAATTTTATGTTC
1 GGGGGAGTTTATGATTCTTAGTGAAAATTAATTTTATGTTC
11190093 GGGGGAGTTTATGATTCTTAGTGAAAATTAATTTTATGTTC
1 GGGGGAGTTTATGATTCTTAGTGAAAATTAATTTTATGTTC
11190134 AAATAATGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.44
Consensus pattern (41 bp):
GGGGGAGTTTATGATTCTTAGTGAAAATTAATTTTATGTTC
Found at i:11190334 original size:21 final size:21
Alignment explanation
Indices: 11190308--11190347 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
11190298 CCCCCTTTGA
*
11190308 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
11190329 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
11190348 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:11196409 original size:26 final size:26
Alignment explanation
Indices: 11196380--11196433 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
11196370 CTCATCAAAA
*
11196380 TAATTTAAAGAATAATGAATGCTAAT
1 TAATTCAAAGAATAATGAATGCTAAT
*
11196406 TAATTCAAAGAATATTGAATGCTAAT
1 TAATTCAAAGAATAATGAATGCTAAT
11196432 TA
1 TA
11196434 CGGACATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (26 bp):
TAATTCAAAGAATAATGAATGCTAAT
Found at i:11196646 original size:14 final size:14
Alignment explanation
Indices: 11196627--11196655 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
11196617 CACGACCTCA
11196627 AGAGGGATAGGTCT
1 AGAGGGATAGGTCT
11196641 AGAGGGATAGGTCT
1 AGAGGGATAGGTCT
11196655 A
1 A
11196656 CTAAATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.07, G:0.41, T:0.21
Consensus pattern (14 bp):
AGAGGGATAGGTCT
Found at i:11211498 original size:2 final size:2
Alignment explanation
Indices: 11211491--11211519 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11211481 TCGATTTCTT
11211491 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11211520 CTTATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11221426 original size:20 final size:18
Alignment explanation
Indices: 11221387--11221422 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
11221377 ATATATTTTT
11221387 TATTTTTTATTAATAATA
1 TATTTTTTATTAATAATA
11221405 TATTTTTTATTAA-AATA
1 TATTTTTTATTAATAATA
11221422 T
1 T
11221423 TATAAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTTTATTAATAATA
Found at i:11221427 original size:25 final size:25
Alignment explanation
Indices: 11221376--11221424 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
11221366 ATATATTTTA
***
11221376 AATATATTTTTTATTTTTTATTAAT
1 AATATATTTTTTATTAAATATTAAT
11221401 AATATATTTTTTATTAAAATATTA
1 AATATATTTTTTATT-AAATATTA
11221425 TAAATTCTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
AATATATTTTTTATTAAATATTAAT
Found at i:11221631 original size:16 final size:16
Alignment explanation
Indices: 11221612--11221659 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
11221602 TGACCCAGCT
11221612 TATTTAAAATTTATTA
1 TATTTAAAATTTATTA
**
11221628 TATTTTTAATTTATTA
1 TATTTAAAATTTATTA
11221644 T-TTTAAATATTT-TTA
1 TATTTAAA-ATTTATTA
11221659 T
1 T
11221660 TTAATATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTAAAATTTATTA
Found at i:11221646 original size:23 final size:25
Alignment explanation
Indices: 11221611--11221676 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 25
11221601 ATGACCCAGC
*
11221611 TTATTTAA-A-ATTTAT-TATATTT
1 TTATTTAATATATTTATAAATATTT
11221633 TTAATTT-AT-TATTT-TAAATATTT
1 TT-ATTTAATATATTTATAAATATTT
11221656 TTATTTAATATATTTA-AAATA
1 TTATTTAATATATTTATAAATA
11221677 GAATAAATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
22 8 0.22
23 18 0.50
24 10 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATTTAATATATTTATAAATATTT
Found at i:11221985 original size:29 final size:29
Alignment explanation
Indices: 11221915--11221987 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
11221905 TATTTTGTTG
*
11221915 AGTCATTCGACTATTAAAAATTATAAAAT
1 AGTCACTCGACTATTAAAAATTATAAAAT
* * *
11221944 AGTCTCTCGACTATTACAAGTTATAAAAT
1 AGTCACTCGACTATTAAAAATTATAAAAT
*
11221973 GGTCACT-GAACTATT
1 AGTCACTCG-ACTATT
11221988 TATTATGACC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 36 0.97
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (29 bp):
AGTCACTCGACTATTAAAAATTATAAAAT
Found at i:11224058 original size:116 final size:120
Alignment explanation
Indices: 11223916--11224151 Score: 378
Period size: 120 Copynumber: 2.0 Consensus size: 120
11223906 TGGAGTTGAC
*
11223916 TTCAGTAAAAAGATCGATTTT--GAGAGAGA-ATG-G-G-G-GAGGGAGGTTGGGGGATAATTAA
1 TTCAGTAAAAAGATCGATTTTCAGAGAGAGAGA-GAGAGAGAGAGGG-GG-GGGGGGATAATTAA
*
11223974 ATAAGAAGAAATGTTGGCAGGCAAAAGTGATTTTAACAATTATTAGCTGCAAAGTAAG
63 ATAAGAAGAAATGTTGACAGGCAAAAGTGATTTTAACAATTATTAGCTGCAAAGTAAG
11224032 TTCAGTAAAAAGATCGATTTTCAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGATAATTAAATA
1 TTCAGTAAAAAGATCGATTTTCAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGATAATTAAATA
11224097 AGAAGAAATGTTGACAGGCAAAAGTGATTTTAACAATTATTAGCTGCAAAGTAAG
66 AGAAGAAATGTTGACAGGCAAAAGTGATTTTAACAATTATTAGCTGCAAAGTAAG
11224152 CCCCCCTGAC
Statistics
Matches: 111, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
116 21 0.19
118 9 0.08
119 2 0.02
120 71 0.64
121 3 0.03
122 5 0.05
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.23
Consensus pattern (120 bp):
TTCAGTAAAAAGATCGATTTTCAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGGATAATTAAATA
AGAAGAAATGTTGACAGGCAAAAGTGATTTTAACAATTATTAGCTGCAAAGTAAG
Found at i:11226824 original size:39 final size:39
Alignment explanation
Indices: 11226781--11226858 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
11226771 ACAACGGCAA
* *
11226781 CAGCAGCAAC-AGTCACATTCGCAACATCAACAGCAGCAG
1 CAGCAGCAACAAG-AACATTCGCAACATCAACAGAAGCAG
*
11226820 CAGCAGCAACAAGAACATTTGCAACATCAACAGAAGCAG
1 CAGCAGCAACAAGAACATTCGCAACATCAACAGAAGCAG
11226859 TATCAACCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.42, C:0.29, G:0.18, T:0.10
Consensus pattern (39 bp):
CAGCAGCAACAAGAACATTCGCAACATCAACAGAAGCAG
Found at i:11228987 original size:40 final size:40
Alignment explanation
Indices: 11228943--11229027 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
11228933 AAAAAGTAAT
* **
11228943 ATTTTCGATTGAGTGCAACCTAAAATGTTAACTTTTTAAC
1 ATTTTCGATTGAGCGCAACCTAAAATGTTAACTACTTAAC
* * *
11228983 ATTTTTGGTTGTGCGCAACCTAAAATGTTAACTACTTAAC
1 ATTTTCGATTGAGCGCAACCTAAAATGTTAACTACTTAAC
11229023 ATTTT
1 ATTTT
11229028 TTGATTGAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (40 bp):
ATTTTCGATTGAGCGCAACCTAAAATGTTAACTACTTAAC
Found at i:11236557 original size:15 final size:15
Alignment explanation
Indices: 11236534--11236586 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
11236524 ATTTTTATCA
11236534 TATTTTATTTCATTT
1 TATTTTATTTCATTT
* *
11236549 TAATTTATTTCATTA
1 TATTTTATTTCATTT
11236564 TATTTTAATTT-ATTT
1 TATTTT-ATTTCATTT
11236579 TATTTTAT
1 TATTTTAT
11236587 CACATGCTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 2 0.06
15 27 0.82
16 4 0.12
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTATTTCATTT
Found at i:11236557 original size:20 final size:19
Alignment explanation
Indices: 11236534--11236583 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 19
11236524 ATTTTTATCA
11236534 TATTTTATTTCATTTTAATT
1 TATTTTATTT-ATTTTAATT
*
11236554 TATTTCATTATATTTTAATT
1 TATTTTATT-TATTTTAATT
11236574 TATTTTATTT
1 TATTTTATTT
11236584 TATCACATGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 1 0.04
20 25 0.93
21 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (19 bp):
TATTTTATTTATTTTAATT
Found at i:11236605 original size:5 final size:5
Alignment explanation
Indices: 11236534--11236586 Score: 61
Period size: 5 Copynumber: 10.6 Consensus size: 5
11236524 ATTTTTATCA
* * * * *
11236534 TATTT TATTT CATTT TAATT TATTT CATTA TATTT TAATT TATTT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT
11236584 TAT
1 TAT
11236587 CACATGCTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (5 bp):
TATTT
Found at i:11245305 original size:3 final size:3
Alignment explanation
Indices: 11245291--11245343 Score: 61
Period size: 3 Copynumber: 17.7 Consensus size: 3
11245281 TTGTCAGTGC
* * * * *
11245291 TAT TAT TGT TAT TAT TAC TAT TAG TAT TAG TAT TAG TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11245339 TAT TA
1 TAT TA
11245344 CAGGTTTTTT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:11249353 original size:16 final size:16
Alignment explanation
Indices: 11249332--11249362 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11249322 TAATAATTAT
*
11249332 TATTAATTTTTTAATC
1 TATTAATTTTCTAATC
11249348 TATTAATTTTCTAAT
1 TATTAATTTTCTAAT
11249363 AAACAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTAATTTTCTAATC
Found at i:11249616 original size:67 final size:67
Alignment explanation
Indices: 11249484--11249609 Score: 173
Period size: 67 Copynumber: 1.9 Consensus size: 67
11249474 AGTCGAGTAA
* * * **
11249484 ATTTTTTTAACTAGCACGAGGCGAGCAAAATTTTAATTAGCTTTACGAGAAACAAGTCGGACAAC
1 ATTTTTTTAACGAGCACGAGGCAAACAAAATTTTAACGAGCTTTACGAGAAACAAGTCGGACAAC
11249549 AG
66 AG
* *
11249551 ATTTTTTTAACGAGCACGAGTCAAACAAAATTTTAACGAG-TTTAACGAGAAACGAGTCG
1 ATTTTTTTAACGAGCACGAGGCAAACAAAATTTTAACGAGCTTT-ACGAGAAACAAGTCG
11249610 AGCAACAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 3 0.06
67 48 0.94
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (67 bp):
ATTTTTTTAACGAGCACGAGGCAAACAAAATTTTAACGAGCTTTACGAGAAACAAGTCGGACAAC
AG
Found at i:11252229 original size:2 final size:2
Alignment explanation
Indices: 11252222--11252261 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
11252212 AACACGTATG
11252222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T
11252262 GTTTGTTTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11253619 original size:16 final size:16
Alignment explanation
Indices: 11253598--11253631 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11253588 GTTGACTTTT
*
11253598 ACTGGTCTAACCATTG
1 ACTGGTATAACCATTG
*
11253614 ACTGGTATGACCATTG
1 ACTGGTATAACCATTG
11253630 AC
1 AC
11253632 CGTTGACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (16 bp):
ACTGGTATAACCATTG
Found at i:11255657 original size:23 final size:23
Alignment explanation
Indices: 11255631--11255678 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
11255621 AATTCCTTAT
11255631 GGACCTAAGGCGACCCTTGGGTA
1 GGACCTAAGGCGACCCTTGGGTA
11255654 GGACCTAAGGCGACCCTTGGGTA
1 GGACCTAAGGCGACCCTTGGGTA
11255677 GG
1 GG
11255679 CTCTACACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.17
Consensus pattern (23 bp):
GGACCTAAGGCGACCCTTGGGTA
Found at i:11255770 original size:32 final size:31
Alignment explanation
Indices: 11255688--11255770 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
11255678 GCTCTACACT
* ** **
11255688 GAGATTTTTCTTGGGTAGGCCCTGTGGCCTG
1 GAGATCTTTCTTGGGTAGGCCCCATGGCCCC
* * *
11255719 GAGATTTTTATTGGGTAGGCCCCATTGCCCC
1 GAGATCTTTCTTGGGTAGGCCCCATGGCCCC
11255750 GAGTATCTTTCTTGGGTAGGC
1 GAG-ATCTTTCTTGGGTAGGC
11255771 TCTTAGGCCC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 28 0.65
32 15 0.35
ACGTcount: A:0.13, C:0.20, G:0.31, T:0.35
Consensus pattern (31 bp):
GAGATCTTTCTTGGGTAGGCCCCATGGCCCC
Found at i:11257809 original size:48 final size:48
Alignment explanation
Indices: 11257738--11257833 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
11257728 CTTTGCGTAA
*
11257738 GATGGTTATTAATCGATTTTGTTTAACACATATGTTGCATTTTAGTAT
1 GATGGTTATCAATCGATTTTGTTTAACACATATGTTGCATTTTAGTAT
*** *
11257786 GATGGTTATCAATCGATTTTGTTTAATGTATATGTTGCATTTTTGTAT
1 GATGGTTATCAATCGATTTTGTTTAACACATATGTTGCATTTTAGTAT
11257834 CAGTACTATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.50
Consensus pattern (48 bp):
GATGGTTATCAATCGATTTTGTTTAACACATATGTTGCATTTTAGTAT
Found at i:11257934 original size:53 final size:53
Alignment explanation
Indices: 11257854--11257962 Score: 155
Period size: 53 Copynumber: 2.1 Consensus size: 53
11257844 TGTATTTTGT
* *
11257854 ACTATGTGTGCACCCATGGTATTCATAATGAGTTTATGAATGACCATTTCGCC
1 ACTATGTGTGCACCCATGGAATTCATAATGAGTTTATAAATGACCATTTCGCC
* * * * *
11257907 ACTATGTGTGCATCCATGGAATTCATAATGTGTTTGTAAATTACCATTTCGGC
1 ACTATGTGTGCACCCATGGAATTCATAATGAGTTTATAAATGACCATTTCGCC
11257960 ACT
1 ACT
11257963 TAGGTGAAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (53 bp):
ACTATGTGTGCACCCATGGAATTCATAATGAGTTTATAAATGACCATTTCGCC
Found at i:11264986 original size:53 final size:52
Alignment explanation
Indices: 11264907--11265008 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 52
11264897 GTACTTTCGG
* *
11264907 CACTATGTGTGCACCATGGTATTCATAATGAATTTA-TGAATGACCATTTTGA
1 CACTATGTGTGCACCATGGAATTCATAAT-AAGTTATTGAATGACCATTTTGA
* *
11264959 CACTATGTGTTCATCCATGGAATTCATAATAAGTTATTGAATTACCATTT
1 CACTATGTGTGCA-CCATGGAATTCATAATAAGTTATTGAATGACCATTT
11265009 CGGCACTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
52 17 0.39
53 27 0.61
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (52 bp):
CACTATGTGTGCACCATGGAATTCATAATAAGTTATTGAATGACCATTTTGA
Found at i:11265204 original size:26 final size:27
Alignment explanation
Indices: 11265166--11265219 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
11265156 CCAGGCCAAT
*
11265166 TTTAATTATTATTATGAT-TTATATGA
1 TTTAATTAGTATTATGATATTATATGA
* * *
11265192 TTTAATTCGTATTTTGATATTTTATGA
1 TTTAATTAGTATTATGATATTATATGA
11265219 T
1 T
11265220 ATACTTATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (27 bp):
TTTAATTAGTATTATGATATTATATGA
Found at i:11272774 original size:15 final size:17
Alignment explanation
Indices: 11272754--11272786 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
11272744 ATTTAAGATA
11272754 CTATCTT-CATCA-TTT
1 CTATCTTCCATCACTTT
11272769 CTATCTTCCATCACTTT
1 CTATCTTCCATCACTTT
11272786 C
1 C
11272787 ACGCCTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.48
Consensus pattern (17 bp):
CTATCTTCCATCACTTT
Found at i:11276758 original size:24 final size:24
Alignment explanation
Indices: 11276731--11276783 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
11276721 CTTCAAGTTG
11276731 GTTTTTCCTTTCGTTTTTAGGTTA
1 GTTTTTCCTTTCGTTTTTAGGTTA
* *
11276755 GTTTTTCCTTTCGTTTTTGGGTTG
1 GTTTTTCCTTTCGTTTTTAGGTTA
11276779 GTTTT
1 GTTTT
11276784 GAAGCCTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.04, C:0.11, G:0.21, T:0.64
Consensus pattern (24 bp):
GTTTTTCCTTTCGTTTTTAGGTTA
Found at i:11277262 original size:20 final size:21
Alignment explanation
Indices: 11277217--11277266 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
11277207 CGATGAACAA
11277217 TATCGATACTGATGAAAGTAG
1 TATCGATACTGATGAAAGTAG
*
11277238 TATCGATACTGAT-ATAG-AGG
1 TATCGATACTGATGAAAGTA-G
11277258 TATCGATAC
1 TATCGATAC
11277267 CAAGAGGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 13 0.48
21 13 0.48
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (21 bp):
TATCGATACTGATGAAAGTAG
Found at i:11277894 original size:24 final size:24
Alignment explanation
Indices: 11277866--11277943 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
11277856 TATCAATCGA
11277866 TTTTGTTTAATGCATATGTTGCAT
1 TTTTGTTTAATGCATATGTTGCAT
* * ** *
11277890 TTTTGTATGATGGTTATTGAT-CGA-
1 TTTTGTTTAATGCATA-TGTTGC-AT
*
11277914 TTTTGTTTAATGCATATATTGCAT
1 TTTTGTTTAATGCATATGTTGCAT
11277938 TTTTGT
1 TTTTGT
11277944 ATCAGTACTA
Statistics
Matches: 39, Mismatches: 11, Indels: 8
0.67 0.19 0.14
Matches are distributed among these distances:
23 3 0.08
24 32 0.82
25 4 0.10
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.55
Consensus pattern (24 bp):
TTTTGTTTAATGCATATGTTGCAT
Found at i:11277914 original size:48 final size:48
Alignment explanation
Indices: 11277845--11277945 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
11277835 ATATACTTTG
*
11277845 TGTATGACGGTTATCAATCGATTTTGTTTAATGCATATGTTGCATTTT
1 TGTATGACGGTTATCAATCGATTTTGTTTAATGCATATATTGCATTTT
* **
11277893 TGTATGATGGTTATTGATCGATTTTGTTTAATGCATATATTGCATTTT
1 TGTATGACGGTTATCAATCGATTTTGTTTAATGCATATATTGCATTTT
11277941 TGTAT
1 TGTAT
11277946 CAGTACTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (48 bp):
TGTATGACGGTTATCAATCGATTTTGTTTAATGCATATATTGCATTTT
Found at i:11278047 original size:53 final size:53
Alignment explanation
Indices: 11277967--11278070 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
11277957 GTACTTTCGG
*
11277967 CACTATGTATGCACTCATGGTATTCATAATGAGTTTATGAATGACCATTTCAA
1 CACTATGTATGCACTCATGGAATTCATAATGAGTTTATGAATGACCATTTCAA
* * * *
11278020 CACTATGTGTGCA-TCCATGGAATTCATAATGAGTTTTTTAATTACCATTTC
1 CACTATGTATGCACT-CATGGAATTCATAATGAGTTTATGAATGACCATTTC
11278071 GGCACTTAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
52 1 0.02
53 44 0.98
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (53 bp):
CACTATGTATGCACTCATGGAATTCATAATGAGTTTATGAATGACCATTTCAA
Found at i:11280442 original size:8 final size:8
Alignment explanation
Indices: 11280429--11280462 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
11280419 AAAGTTTCGA
11280429 TTAATATG
1 TTAATATG
*
11280437 TTAATATA
1 TTAATATG
11280445 TTAATATG
1 TTAATATG
11280453 TTAATATG
1 TTAATATG
11280461 TT
1 TT
11280463 TTTTTACAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (8 bp):
TTAATATG
Found at i:11284204 original size:44 final size:44
Alignment explanation
Indices: 11284153--11284238 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
11284143 CAACTCGTAA
* * *
11284153 TTTGCACCGAAGTGCCACATAATTGTCCTGAATGACCACATAGG
1 TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATAGG
11284197 TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATA
1 TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATA
11284239 AGACCCTCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (44 bp):
TTTGCACCGAAGTGCCACATAATTATCCCGAAGGACCACATAGG
Found at i:11284229 original size:21 final size:21
Alignment explanation
Indices: 11284150--11284239 Score: 71
Period size: 21 Copynumber: 4.1 Consensus size: 21
11284140 CCACAACTCG
11284150 TAATTTGCACCGAAGTG-CCACA
1 TAATTT-C-CCGAAGTGACCACA
*
11284172 TAATTGTCCTGAA-TGACCACA
1 TAATT-TCCCGAAGTGACCACA
*
11284193 TAGGTTTGCACCGAAGTG-CCACA
1 TA-ATTT-C-CCGAAGTGACCACA
11284216 TAATTATCCCGAAG-GACCACA
1 TAATT-TCCCGAAGTGACCACA
11284237 TAA
1 TAA
11284240 GACCCTCTAC
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
20 3 0.05
21 26 0.46
22 12 0.21
23 13 0.23
24 2 0.04
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (21 bp):
TAATTTCCCGAAGTGACCACA
Found at i:11284466 original size:26 final size:26
Alignment explanation
Indices: 11284416--11284484 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
11284406 AATCATATAC
* *
11284416 ATATAATCATAAAAT-ATAGATTGCATA
1 ATATAA-CATAAAATAAAACATTGCA-A
*
11284443 ATATAA-ATAGAATAAAACATTGCAA
1 ATATAACATAAAATAAAACATTGCAA
11284468 ATATAACATAAAATAAA
1 ATATAACATAAAATAAA
11284485 TTGTAAAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 13 0.36
26 17 0.47
27 6 0.17
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (26 bp):
ATATAACATAAAATAAAACATTGCAA
Found at i:11296787 original size:773 final size:772
Alignment explanation
Indices: 11294673--11301586 Score: 13261
Period size: 772 Copynumber: 8.9 Consensus size: 772
11294663 AAGGGCCCCC
11294673 ATTCAGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGC
1 ATTC-GCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGC
11294738 ATCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAAT
65 ATCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAAT
11294803 TTAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
130 TTAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
* *
11294868 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCCCAGAAGAAACTTACAAGCTCA
195 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
*
11294933 GTTCAGCTTGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
260 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
11294998 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
325 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
11295063 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
390 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
*
11295128 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAACTTGGTCTTAACCTC
455 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
11295193 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
520 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
11295258 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
585 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
*
11295323 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATGTATTGCTTTATCAATTTATTGTCGGTCTCTT
650 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
11295388 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
715 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
* *
11295446 ATTCGCTATTATTTCACACACGTAACAAGGAATATTCGCTAGGGCACAAAAGAAGGTTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11295511 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
*
11295576 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCATGGGAC
131 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
*
11295641 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAA
196 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
11295706 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
261 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
11295771 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
326 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
*
11295836 TGGCCTGGGTTTATTTTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
391 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
11295901 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
456 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
11295966 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
521 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
11296031 GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
586 GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
11296096 GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
651 GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
11296161 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
716 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
*
11296218 ATTCTCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11296283 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
*
11296348 TAATAGAGTAAGCTAGAAAAAGAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
131 TAATAAAGTAAGCTAGAAAAA-AAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
11296413 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
195 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
11296478 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
260 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
*
11296543 TTGTCGAGATGTTTATTAAATTTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
325 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
11296608 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
390 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
11296673 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
455 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
*
11296738 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTATGTGAACAAAGGGGTTGATCTAGGA
520 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
*
11296803 AGCTTGACCCTAATTCATCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
585 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
11296868 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
650 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
11296933 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
715 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
11296991 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11297056 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
*
11297121 TAATAAAGTAAGCTAGAAAGAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
131 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
*
11297186 AACCTCCATTGTTGAGTGTTTCGAATGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
196 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
* *
11297251 TTCAGCTCATGACAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
261 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
11297316 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
326 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
*
11297381 TGGCCTGGGTTTATTGAGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
391 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
11297446 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
456 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
*
11297511 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGAAA
521 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
* *
11297576 GCTTGACCCTAATTCATCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGCGTAGTGTTTAAT
586 GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
* *
11297641 GGATAGTATCTTGCTAGGGTTTATACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
651 GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
* *
11297706 CTAGGAATAGTGCAAGGGATATTCCTAAGACAGCTGAGTGCATCAAACCTTACGCAT
716 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
11297763 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11297828 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
11297893 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
131 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
11297958 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
196 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
11298023 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
261 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
*
11298088 CGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
326 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
11298153 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
391 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
11298218 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
456 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
11298283 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
521 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
*
11298348 GCTTGACCCTAATTCATCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
586 GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
*
11298413 GGATAGTAGCTTGCTAGGGTTTACACAGGAATGTATTGCTTTATCAATTTATTGTCGGTCTCTTG
651 GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
11298478 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
716 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
11298535 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11298600 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
11298665 TAATAAAGTAAGCTAGAAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
131 TAATAAAGTAAGCTAG-AAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
11298730 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
195 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
11298795 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
260 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
11298860 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
325 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
11298925 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
390 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
*
11298990 CATGTTTTGTTCATTTTTTTACATTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
455 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
11299055 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
520 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
*
11299120 AGCTTGACCCTAATTTGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
585 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
11299185 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
650 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
* *
11299250 GCTAGGAATAGTGCAAGGGATATTCCTAAGAAGGTTGAGTGCATCAAACCTTAGGCAT
715 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
* *
11299308 ATTTGCTATTATTTCACACACATAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
* *
11299373 TCAAACCTTAGGCACCTCCGCTATAAAAAGGAAATATAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
11299438 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
131 TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
*
11299503 AACCTCCATTGTTGAGTTTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
196 AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
11299568 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
261 TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
* * *
11299633 CGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCGGCCATGAACGGATTTAGCT
326 TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
11299698 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
391 TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
11299763 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
456 ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
11299828 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
521 GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
* *
11299893 GCTTGACCCTAATTCATCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAGGAGTAGTGTTTAAT
586 GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
*
11299958 GGATAGTAGCTTGCTAGGGTTTACACAGGAATGTATTGCTTTATCAATTTATTGTCGGTCTCTTG
651 GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
11300023 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
716 CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
11300080 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
11300145 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
*
11300210 TAATAAAGTAAGTTAGAAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
131 TAATAAAGTAAGCTAG-AAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
11300275 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
195 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
* *
11300340 GTTCAGCTCGTGCCAGCACATGAGTTTTTCTATCTTTTTTTATCATTTAGTGTTATTCATCATTT
260 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
11300405 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
325 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
11300470 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
390 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
*
11300535 CATGTTTTGTTCATTTTTTTACATTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
455 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
11300600 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
520 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
*
11300665 AGCTTGACCCTAATTTGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
585 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
11300730 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
650 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
*
11300795 GCTAGGAATAGTGCAAGGGATATTCCTAAGAAGGCTGAGTGCATCAAACCTTAGGCAT
715 GCTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
*
11300853 ATTTGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
1 ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
*
11300918 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATATAAAATACATTAAGGGGGAGTTTGGAATT
66 TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
11300983 TAATAAAGTAAGCTAGAAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
131 TAATAAAGTAAGCTAG-AAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGA
*
11301048 CAACCTCCATTGTTGAGTTTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
195 CAACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCA
11301113 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
260 GTTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTT
*
11301178 TCGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
325 TTGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGC
11301243 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
390 TTGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATA
*
11301308 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACACACGAAAGTTGGTCTTAACCTC
455 CATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTC
11301373 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
520 AGTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGA
*
11301438 AGATTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
585 AGCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAA
*
11301503 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATGTATTGCTTTATCAATTTATTGTCGGTCTCTT
650 TGGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTT
11301568 GCTAGGAATAGTGCAAGGG
715 GCTAGGAATAGTGCAAGGG
11301587 CAAATTTGTA
Statistics
Matches: 6039, Mismatches: 99, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
772 3175 0.53
773 2864 0.47
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (772 bp):
ATTCGCTATTATTTCACACACGTAACAAGGGATATTCGCTAGGGCACAAAAGAAGGCTGAGTGCA
TCAAACCTTAGGCACCTCCACTATAAAAAGGAAATAGAAAATACATTAAGGGGGAGTTTGGAATT
TAATAAAGTAAGCTAGAAAAAAAAGATGGCATCTTTTTCCTCTCTTCTCTCCTCCTTCGTGGGAC
AACCTCCATTGTTGAGTGTTTCGAAGGATATCACGCCAATTCTCAGAAGAAGCTTACAAGCTCAG
TTCAGCTCGTGCCAGCACAGGAGTTTTTCTATCTTTTTTTATCATTTAGTGCTATTCATCATTTT
TGTCGAGATGTTTATTAAATGTTTAACTATGGATGTTATTTGCGCAGCCATGAACTGATTTAGCT
TGGCCTGGGTTTATTGTGGATGATGATGATTTTTTTAATGAATGTATAAGCATTTGTATTAATAC
ATGTTTTGTTCATTTTTTTACTTTCTTAGGTTAGTAAGAACCCACGAAAGTTGGTCTTAACCTCA
GTTAGTTACTTAATATTTGAAAGAGTTAAATTAGATTTACGTGAACAAAGGGGTTGATCTAGGAA
GCTTGACCCTAATTCGTCTTAGGAATAAAGAAGAGTTTCAACCACTAAAAAGAGTAGTGTTTAAT
GGATAGTAGCTTGCTAGGGTTTACACAGGAATTTATTGCTTTATCAATTTATTGTCGGTCTCTTG
CTAGGAATAGTGCAAGGGATATTCCTAAGACGGCTGAGTGCATCAAACCTTAGGCAT
Found at i:11303653 original size:6 final size:7
Alignment explanation
Indices: 11303634--11303662 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
11303624 GGAACCCAGC
11303634 GTAAAAA
1 GTAAAAA
11303641 GTAAAAA
1 GTAAAAA
11303648 GTAAAAA
1 GTAAAAA
11303655 GTAAAAA
1 GTAAAAA
11303662 G
1 G
11303663 GAAGATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
GTAAAAA
Found at i:11304929 original size:13 final size:13
Alignment explanation
Indices: 11304894--11304930 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
11304884 GTCATAAATC
*
11304894 TATGACGCGCATT
1 TATGACGCTCATT
11304907 TATGACGCTCATT
1 TATGACGCTCATT
*
11304920 TATGATGCTCA
1 TATGACGCTCA
11304931 CTGCGCGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (13 bp):
TATGACGCTCATT
Found at i:11308344 original size:2 final size:2
Alignment explanation
Indices: 11308337--11308393 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
11308327 GATCCTAACT
11308337 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
11308379 TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA T
11308394 GTATTCACTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11309565 original size:10 final size:10
Alignment explanation
Indices: 11309544--11309582 Score: 64
Period size: 9 Copynumber: 4.1 Consensus size: 10
11309534 GGACCGGTTG
11309544 AAAACC-GGA
1 AAAACCGGGA
11309553 AAAACCGGG-
1 AAAACCGGGA
11309562 AAAACCGGGA
1 AAAACCGGGA
11309572 AAAACCGGGA
1 AAAACCGGGA
11309582 A
1 A
11309583 TTTTGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.51, C:0.21, G:0.28, T:0.00
Consensus pattern (10 bp):
AAAACCGGGA
Found at i:11309574 original size:19 final size:18
Alignment explanation
Indices: 11309543--11309582 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
11309533 CGGACCGGTT
11309543 GAAAACCGGAAAAACCGG
1 GAAAACCGGAAAAACCGG
11309561 GAAAACCGGGAAAAACCGG
1 GAAAACC-GGAAAAACCGG
11309580 GAA
1 GAA
11309583 TTTTGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.50, C:0.20, G:0.30, T:0.00
Consensus pattern (18 bp):
GAAAACCGGAAAAACCGG
Found at i:11310321 original size:16 final size:16
Alignment explanation
Indices: 11310300--11310331 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
11310290 ACGTCGTCCG
11310300 ATTTTTTTATTAAATA
1 ATTTTTTTATTAAATA
11310316 ATTTTTTTATTAAATA
1 ATTTTTTTATTAAATA
11310332 TAGTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTTTTATTAAATA
Found at i:11311129 original size:20 final size:20
Alignment explanation
Indices: 11311100--11311139 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
11311090 AATAATCATA
*
11311100 TAAAATCATAATGTAATATT
1 TAAAAACATAATGTAATATT
*
11311120 TAAAAACATAATTTAATATT
1 TAAAAACATAATGTAATATT
11311140 ATACTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.40
Consensus pattern (20 bp):
TAAAAACATAATGTAATATT
Found at i:11313933 original size:21 final size:21
Alignment explanation
Indices: 11313904--11313944 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
11313894 TTAATTTGAT
*
11313904 AATTTAAAAAAAATTATTTTG
1 AATTAAAAAAAAATTATTTTG
* *
11313925 AATTAAAAAAACATTTTTTT
1 AATTAAAAAAAAATTATTTT
11313945 AGAAAAAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
AATTAAAAAAAAATTATTTTG
Found at i:11315309 original size:36 final size:37
Alignment explanation
Indices: 11315239--11315310 Score: 94
Period size: 35 Copynumber: 2.0 Consensus size: 37
11315229 GAAATGATAT
* *
11315239 AAAATCTGAAACAAGAATCTGAAATAATCCAAACCTA
1 AAAATCTGAAACAAGAATCTAAAATAATCAAAACCTA
*
11315276 AAAATCT-AAAC-AGAATTTAAAATAATTCAAAACCT
1 AAAATCTGAAACAAGAATCTAAAATAA-TCAAAACCT
11315311 TATCAAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 12 0.39
36 12 0.39
37 7 0.23
ACGTcount: A:0.56, C:0.17, G:0.06, T:0.22
Consensus pattern (37 bp):
AAAATCTGAAACAAGAATCTAAAATAATCAAAACCTA
Found at i:11316329 original size:16 final size:18
Alignment explanation
Indices: 11316287--11316331 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 18
11316277 TTACGGAATG
11316287 TAAGATTACCAGTGAGAA
1 TAAGATTACCAGTGAGAA
11316305 TAAAAGATTACCAG-G-GAA
1 T--AAGATTACCAGTGAGAA
11316323 TAAGATTAC
1 TAAGATTAC
11316332 TGGGAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.32
18 5 0.20
19 1 0.04
20 11 0.44
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (18 bp):
TAAGATTACCAGTGAGAA
Found at i:11317342 original size:30 final size:30
Alignment explanation
Indices: 11317306--11317366 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
11317296 GTATCATAAG
*
11317306 TGCACCGACGAGAGGTATGGTATCACTTGC
1 TGCACCGACGAGAGGTATGATATCACTTGC
*
11317336 TGCACCGACGAGAGGTATGATATTACTTGC
1 TGCACCGACGAGAGGTATGATATCACTTGC
11317366 T
1 T
11317367 TTAAAACATG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (30 bp):
TGCACCGACGAGAGGTATGATATCACTTGC
Found at i:11326502 original size:2 final size:2
Alignment explanation
Indices: 11326495--11326521 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11326485 TGAAAAACAA
11326495 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
11326522 AGAAATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11327338 original size:60 final size:60
Alignment explanation
Indices: 11327249--11327373 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 60
11327239 TGAACCATAT
* *
11327249 AAATGGTCTCTCGACTATAGTGAATTACTTTATTGAGT-TTTATGACTATTAAAAATTATA
1 AAATGATCTCTCGACTATAGTGAATTACTTTATTGAGTCTCT-TGACTATTAAAAATTATA
* *
11327309 AAATGATCTCTCGACTATA-TGATATTACTTTGTTGAGTCTCTTGACTATTAAAAGTTATA
1 AAATGATCTCTCGACTATAGTGA-ATTACTTTATTGAGTCTCTTGACTATTAAAAATTATA
11327369 AAATG
1 AAATG
11327374 GTCACCCAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
59 3 0.05
60 54 0.92
61 2 0.03
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (60 bp):
AAATGATCTCTCGACTATAGTGAATTACTTTATTGAGTCTCTTGACTATTAAAAATTATA
Found at i:11327962 original size:6 final size:6
Alignment explanation
Indices: 11327951--11327976 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
11327941 CTTCTATATT
11327951 GAATTA GAATTA GAATTA GAATTA GA
1 GAATTA GAATTA GAATTA GAATTA GA
11327977 TTTAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (6 bp):
GAATTA
Found at i:11327985 original size:18 final size:18
Alignment explanation
Indices: 11327951--11327985 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11327941 CTTCTATATT
*
11327951 GAATTAGAATTAGAATTA
1 GAATTAGAATTAAAATTA
*
11327969 GAATTAGATTTAAAATT
1 GAATTAGAATTAAAATT
11327986 TATAAAGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (18 bp):
GAATTAGAATTAAAATTA
Found at i:11334062 original size:20 final size:20
Alignment explanation
Indices: 11333975--11334068 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
11333965 AACATGCTGA
* * *
11333975 AATTTGATAAATCTGGTTTC
1 AATTTGACAAAACCGGTTTC
* **
11333995 AATTTGACAAAACAGGTAAC
1 AATTTGACAAAACCGGTTTC
* **
11334015 AAATTTGACAAAACCGATTGG
1 -AATTTGACAAAACCGGTTTC
* *
11334036 AAATTGACGAAACCGGTTTC
1 AATTTGACAAAACCGGTTTC
11334056 AATTTGACAAAAC
1 AATTTGACAAAAC
11334069 AGGTAAAGAG
Statistics
Matches: 56, Mismatches: 17, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
20 41 0.73
21 15 0.27
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (20 bp):
AATTTGACAAAACCGGTTTC
Found at i:11334713 original size:177 final size:177
Alignment explanation
Indices: 11334417--11334783 Score: 603
Period size: 177 Copynumber: 2.1 Consensus size: 177
11334407 AAACGATTTT
* *
11334417 AATTTGACAAAACTGGTAAAGAGCTACCGGAGTGGTTGAAATTTGTATCGATACTTTTATAAGTA
1 AATTTGACAAAACTGGTAAAGAGCTACCAGAATGGTTGAAATTTGTATCGATACTTTTATAAGTA
*
11334482 TATGTACCAAAGTATCGGTACTTTAGAACTTTAAAAGAATTGCAATAGTAGCGCCTATAAAGTAT
66 TATGTACCAAAGTATCGGTACTTTAGAACTTTAAAAGAATTGCAATAATAGCGCCTATAAAGTAT
* * *
11334547 CAATACTTTAGACACATGTATTGATACATAACAATATAACAGGTTTA
131 CAATACCTTAGACACATGTATCGATACATAACAATATAACAGGTTGA
* *
11334594 AATTTGAGAAAA-TCGGTAAAGAGCTATCAGAATGGTTGAAATTTGTATCGATACTTTTATAAGT
1 AATTTGACAAAACT-GGTAAAGAGCTACCAGAATGGTTGAAATTTGTATCGATACTTTTATAAGT
11334658 ATATGTACCAAAGTATCGGTACTTTAGGAA-TTTAAAAGAATTGCAATAATAGCGCCTATAAAGT
65 ATATGTACCAAAGTATCGGTACTTTA-GAACTTTAAAAGAATTGCAATAATAGCGCCTATAAAGT
* * *
11334722 ATCGATACCTTAGATACATGTATCGATACATGACAATATAACAGGTTGA
129 ATCAATACCTTAGACACATGTATCGATACATAACAATATAACAGGTTGA
11334771 AATTTGACAAAAC
1 AATTTGACAAAAC
11334784 CATTTTCAAT
Statistics
Matches: 175, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
176 1 0.01
177 171 0.98
178 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (177 bp):
AATTTGACAAAACTGGTAAAGAGCTACCAGAATGGTTGAAATTTGTATCGATACTTTTATAAGTA
TATGTACCAAAGTATCGGTACTTTAGAACTTTAAAAGAATTGCAATAATAGCGCCTATAAAGTAT
CAATACCTTAGACACATGTATCGATACATAACAATATAACAGGTTGA
Found at i:11335186 original size:287 final size:288
Alignment explanation
Indices: 11334670--11335250 Score: 1013
Period size: 287 Copynumber: 2.0 Consensus size: 288
11334660 ATGTACCAAA
* *
11334670 GTATCGGTACTTTAGGAATTTAAAAGAATTGCAATAATAGCGCCTATAAAGTATCGATACCTTAG
1 GTATCGGTACTTTAGGAATTTAAAAGAATTGCAAGAATAGCGCCTATAAAGTATCGATACCTCAG
*
11334735 ATACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAAACCATTTTCAATTTGACA
66 ACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAAACCATTTTCAATTTGACA
11334800 AAATCGGTAAGCGCTACCAGAATTATTGAAAGTATCGATACGTTTATAAGTATATGTACCATAGT
131 AAATCGGTAAGCGCTACCAGAATTATTGAAAGTATCGATACGTTTATAAGTATATGTACCATAGT
* *
11334865 ATATGTACTTTAGGAATTTAAAAGAAATGAAAAAAG-AAAAATGTCTCGAAAGTATCGATACCTT
196 ATAGGTACTTTAGGAATTTAAAAGAAATGAAAAAAGAAAAAACGTCTCGAAAGTATCGATACCTT
11334929 ACACAAAAGTATCAACATTTGGGGAATG
261 ACACAAAAGTATCAACATTTGGGGAATG
11334957 GTATCGGTACTTTAGGAATTTAAAAGAATTGCAAGAATAGCGCCTATAAAGTATCGATACCTCAG
1 GTATCGGTACTTTAGGAATTTAAAAGAATTGCAAGAATAGCGCCTATAAAGTATCGATACCTCAG
* *
11335022 ACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAAATCGTTTT-AATTTGACA
66 ACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAAACCATTTTCAATTTGACA
* * *
11335086 AAGTCGGTAAAGTGCTACCATAATTATTGAAAGTATCGATACGTTTATAAGTATATGTACCATAG
131 AAATCGGT-AAGCGCTACCAGAATTATTGAAAGTATCGATACGTTTATAAGTATATGTACCATAG
* * *
11335151 TATCGGTGCTTTAGGAATTTAAAAGAAATGAAAAAAGAAAAAACGTCTTGAAAGTATCGATACCT
195 TATAGGTACTTTAGGAATTTAAAAGAAATGAAAAAAGAAAAAACGTCTCGAAAGTATCGATACCT
*
11335216 TATACAAAAGTATCAACATTTGGGGAATG
260 TACACAAAAGTATCAACATTTGGGGAATG
11335245 GTATCG
1 GTATCG
11335251 ATTAAATATA
Statistics
Matches: 278, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
286 16 0.06
287 203 0.73
288 59 0.21
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (288 bp):
GTATCGGTACTTTAGGAATTTAAAAGAATTGCAAGAATAGCGCCTATAAAGTATCGATACCTCAG
ACACATGTATCGATACATGACAATATAACAGGTTGAAATTTGACAAAACCATTTTCAATTTGACA
AAATCGGTAAGCGCTACCAGAATTATTGAAAGTATCGATACGTTTATAAGTATATGTACCATAGT
ATAGGTACTTTAGGAATTTAAAAGAAATGAAAAAAGAAAAAACGTCTCGAAAGTATCGATACCTT
ACACAAAAGTATCAACATTTGGGGAATG
Found at i:11348128 original size:46 final size:45
Alignment explanation
Indices: 11348067--11348357 Score: 395
Period size: 46 Copynumber: 6.4 Consensus size: 45
11348057 GATAAAATCC
* * * *
11348067 CTTACCATTTATCCCATAAGCTCGTAGGCTTATTTTACCAAAATA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
11348112 CTTACCATTTAATCCCATAAGCTCATAAGCTTATTTTACCAATATA
1 CTTACCATTT-GTTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
11348158 CTTACCATTTGTTCCATAAGCTCGAAAGCTTATTTTTACCACTATA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTA-TTTTACCAATATA
* *
11348204 CTTACCATTTGTTCCATAAGCTCGTAAGCTTGTTTTATCAATATA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
11348249 CTTACTATTTGTTCTATAAGCTCGTAAGCTTATTTTTACCAATATG
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTA-TTTTACCAATATA
* *
11348295 CTTACCATTTGTTCTATAAGCTCGTAAGCTTATTTTATCAATATA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
11348340 CTTTCCATTT-TTCCATAA
1 CTTACCATTTGTTCCATAA
11348358 CCATATACCA
Statistics
Matches: 221, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
44 7 0.03
45 88 0.40
46 126 0.57
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (45 bp):
CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:11348222 original size:91 final size:91
Alignment explanation
Indices: 11348067--11348357 Score: 415
Period size: 91 Copynumber: 3.2 Consensus size: 91
11348057 GATAAAATCC
* * * * * *
11348067 CTTACCATTTATCCCATAAGCTCGTAGGCTTA-TTTTACCAAAATACTTACCATTTAATCCCATA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTTACCAATATACTTACCATTT-GTTCCATA
* *
11348131 AGCTCATAAGCTTATTTTACCAATATA
65 AGCTCGTAAGCTTATTTTATCAATATA
* *
11348158 CTTACCATTTGTTCCATAAGCTCGAAAGCTTATTTTTACCACTATACTTACCATTTGTTCCATAA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAA
*
11348223 GCTCGTAAGCTTGTTTTATCAATATA
66 GCTCGTAAGCTTATTTTATCAATATA
* * * *
11348249 CTTACTATTTGTTCTATAAGCTCGTAAGCTTATTTTTACCAATATGCTTACCATTTGTTCTATAA
1 CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAA
11348314 GCTCGTAAGCTTATTTTATCAATATA
66 GCTCGTAAGCTTATTTTATCAATATA
*
11348340 CTTTCCATTT-TTCCATAA
1 CTTACCATTTGTTCCATAA
11348358 CCATATACCA
Statistics
Matches: 178, Mismatches: 21, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
90 7 0.04
91 150 0.84
92 21 0.12
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (91 bp):
CTTACCATTTGTTCCATAAGCTCGTAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAA
GCTCGTAAGCTTATTTTATCAATATA
Found at i:11348251 original size:137 final size:135
Alignment explanation
Indices: 11348067--11348357 Score: 395
Period size: 137 Copynumber: 2.1 Consensus size: 135
11348057 GATAAAATCC
* *
11348067 CTTACCATTTATCCCATAAGCTCGTAGGCTTATTTTACCAAAATACTTACCATTTAATCCCATAA
1 CTTACCATTT-TTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTT-ATCCCATAA
11348132 GCTCATAAGCTTA-TTTTACCAATATACTTACCATTTGTTCCATAAGCTCGAAAGCTTATTTTTA
64 GCTCATAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAAGCTCGAAAGCTTA-TTTTA
*
11348196 CCACTATA
128 CCAATATA
* * * * * * *
11348204 CTTACCATTTGTTCCATAAGCTCGTAAGCTTGTTTTATCAATATACTTACTATTTGTTCTATAAG
1 CTTACCATTT-TTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTATCCCATAAG
* * * * *
11348269 CTCGTAAGCTTATTTTTACCAATATGCTTACCATTTGTTCTATAAGCTCGTAAGCTTATTTTATC
65 CTCATAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAAGCTCGAAAGCTTATTTTACC
11348334 AATATA
130 AATATA
*
11348340 CTTTCCATTTTTCCATAA
1 CTTACCATTTTTCCATAA
11348358 CCATATACCA
Statistics
Matches: 136, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
135 8 0.06
136 38 0.28
137 90 0.66
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (135 bp):
CTTACCATTTTTCCATAAGCTCGTAAGCTTATTTTACCAAAATACTTACCATTTATCCCATAAGC
TCATAAGCTTATTTTTACCAATATACTTACCATTTGTTCCATAAGCTCGAAAGCTTATTTTACCA
ATATA
Found at i:11349515 original size:30 final size:29
Alignment explanation
Indices: 11349445--11349515 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
11349435 TACAACAACC
* * *
11349445 CCTCAATTTTCCAAAATTTACAAATTGAT
1 CCTCAATTTTTCAAAAATTACAAAATGAT
* *
11349474 -CTCCAACTTTTCAAAAATTACAAAATGGT
1 CCT-CAATTTTTCAAAAATTACAAAATGAT
11349503 CCTCAAATTTTTC
1 CCTC-AATTTTTC
11349516 TAAGACTTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
28 2 0.06
29 22 0.67
30 9 0.27
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.37
Consensus pattern (29 bp):
CCTCAATTTTTCAAAAATTACAAAATGAT
Found at i:11350001 original size:21 final size:21
Alignment explanation
Indices: 11349966--11350017 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 21
11349956 AGTTTAAATT
11349966 ATATTCCACTATAAATGAATATA
1 ATATT-CA-TATAAATGAATATA
11349989 ATATTCATATAAATGAATATA
1 ATATTCATATAAATGAATATA
11350010 ATATTCAT
1 ATATTCAT
11350018 TTAATTGGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 22 0.76
22 2 0.07
23 5 0.17
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (21 bp):
ATATTCATATAAATGAATATA
Found at i:11350891 original size:199 final size:199
Alignment explanation
Indices: 11350551--11351063 Score: 798
Period size: 199 Copynumber: 2.6 Consensus size: 199
11350541 GGGTATTACA
*
11350551 CTATTACTTTAAAGCAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACTGGTATAATGATA
1 CTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACTGGTATAATGATA
* * *
11350616 ATAGGTGTAAATATCAAGTATCAATACTTTTATATAGGTATAGATACTTTTATTATAGTATGCTT
66 ATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGTATAGATACTTTTATTACAGTATGCTT
*
11350681 CTCAAACAATTTACACGTAAAATGCATCGATACACATATATAAAAT-ATAGATACTTGAAATTTT
131 CTCAAACAATTTACACGTAAAATGCATCGATACACATATATAAAATAAT-GATACTTGAAATTTC
11350745 GAAAC
195 GAAAC
* * * * *
11350750 CTATTACTTTAAAGTAATAAGTAAATTAACAATAG-AAACGATAAAAGTTTACCGATATAATGAT
1 CTATTACTTTAAAGTAATAGGTAAATTAACAAT-GTAAACGGTAAAAGTCTACTGGTATAATGAT
** ** *
11350814 AATATACGTAAATACCAAGTATTGATACTTTTATATAGGTATAGATACTTTTATTCCAGTATGCT
65 AATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGTATAGATACTTTTATTACAGTATGCT
* * *
11350879 TCTCAAACAATTTGCACGTAAAATGTATCGATACACATATATAAAGTAATGATACTTGAAATTTC
130 TCTCAAACAATTTACACGTAAAATGCATCGATACACATATATAAAATAATGATACTTGAAATTTC
11350944 GAAAC
195 GAAAC
*
11350949 CTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACTGGTATATTGATA
1 CTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACTGGTATAATGATA
*
11351014 ATAGGCATAAATACCAAGTATCAATACTTTTATATAGGTATTA-ATACTTT
66 ATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGTA-TAGATACTTT
11351064 CGATCTAAAC
Statistics
Matches: 281, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
198 1 0.00
199 275 0.98
200 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (199 bp):
CTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAACGGTAAAAGTCTACTGGTATAATGATA
ATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGTATAGATACTTTTATTACAGTATGCTT
CTCAAACAATTTACACGTAAAATGCATCGATACACATATATAAAATAATGATACTTGAAATTTCG
AAAC
Found at i:11354633 original size:15 final size:15
Alignment explanation
Indices: 11354613--11354641 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11354603 GTTTTTTCTC
11354613 CTTTTTTTCGAACTA
1 CTTTTTTTCGAACTA
11354628 CTTTTTTTCGAACT
1 CTTTTTTTCGAACT
11354642 GCTTCTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.21, G:0.07, T:0.55
Consensus pattern (15 bp):
CTTTTTTTCGAACTA
Found at i:11363513 original size:21 final size:22
Alignment explanation
Indices: 11363482--11363523 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
11363472 GAAAATAGAC
11363482 ATAAATGTATCGATACTTATAT
1 ATAAATGTATCGATACTTATAT
11363504 ATAAA-GTATCGATACTTATA
1 ATAAATGTATCGATACTTATA
11363524 ATTTCAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (22 bp):
ATAAATGTATCGATACTTATAT
Done.