Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 63 of 78
Found at i:12617516 original size:27 final size:22
Alignment explanation
Indices: 12617451--12617764 Score: 146
Period size: 22 Copynumber: 13.5 Consensus size: 22
12617441 TTTGTATATG
*
12617451 TATAGTTTATA-TATATATACTT
1 TATATTTTATACT-TATATACTT
*
12617473 TATATTTAATACTTATATACTT
1 TATATTTTATACTTATATACTT
12617495 TATATTATTGTATACCTATATATACTT
1 TATA-T-TT-TATA-CT-TATATACTT
12617522 TATATTTATATACTTATATACTT
1 TATATTT-TATACTTATATACTT
* *
12617545 TAGT-CTTTATA-AT-TATACTT
1 TA-TATTTTATACTTATATACTT
* **
12617565 TATATATATATA-TATATATACACA
1 TATAT-TTTATACT-TATATAC-TT
* * ***
12617589 CACACAATATAC-T-TATACTT
1 TATATTTTATACTTATATACTT
*
12617609 TATATTATTATATATGTATATATTCTT
1 TATATT-TTATA-CT-TATATA--CTT
12617636 TATACTAAAACTTTATA--TATATACTT
1 TATA-T-----TTTATACTTATATACTT
*
12617662 TATAGTTTATA-TATATATATATACTT
1 TATATTTTATACT-TAT----ATACTT
*
12617688 TATATTTCATACTTATATAC-T
1 TATATTTTATACTTATATACTT
*
12617709 TATATTTAATACTTATATACTT
1 TATATTTTATACTTATATACTT
*
12617731 TATATTATATACTTATATACTT
1 TATATTTTATACTTATATACTT
12617753 TATATTATTATA
1 TATATT-TTATA
12617765 TACAAATATA
Statistics
Matches: 227, Mismatches: 30, Indels: 69
0.70 0.09 0.21
Matches are distributed among these distances:
19 1 0.00
20 17 0.07
21 35 0.15
22 62 0.27
23 29 0.13
24 8 0.04
25 13 0.06
26 28 0.12
27 21 0.09
28 7 0.03
32 5 0.02
33 1 0.00
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (22 bp):
TATATTTTATACTTATATACTT
Found at i:12617674 original size:22 final size:21
Alignment explanation
Indices: 12617649--12617933 Score: 95
Period size: 22 Copynumber: 13.4 Consensus size: 21
12617639 ACTAAAACTT
12617649 TATATATATACTTTATAGTTTA
1 TATATATATACTTTATA-TTTA
12617671 TATATATATA---TATACTTTA
1 TATATATATACTTTATA-TTTA
*
12617690 TAT-T-TCATACTTATATACTTA
1 TATATAT-ATACTT-TATATTTA
*
12617711 TATTTA-ATACTTATATACTTTA
1 TATATATATACTT-TATA-TTTA
12617733 TAT-TATATACTTATATACTTTA
1 TATATATATACTT-TATA-TTTA
* *
12617755 TATTATTATATACAAATATACACTTTA
1 TA-TA-TATATAC---TTTATA-TTTA
*
12617782 TACTA-A-A-ACTTTATATATA
1 TA-TATATATACTTTATATTTA
* *
12617801 TACTATTTAGT-TTTTATATTTA
1 TA-TATATA-TACTTTATATTTA
* *
12617823 TATATATATA-TATATATATA
1 TATATATATACTTTATATTTA
* * *
12617843 TACTTTATATGTCTATATACTTTA
1 TA-TATATAT-ACTTTATA-TTTA
*
12617867 TA-ATA-AAACTTTATATATTA
1 TATATATATACTTTATAT-TTA
*
12617887 T-TAT-TAT--TATTATATATA
1 TATATATATACT-TTATATTTA
* *
12617905 TATATATATA-TATATATATA
1 TATATATATACTTTATATTTA
12617925 TATATATAT
1 TATATATAT
12617934 TATAACATCT
Statistics
Matches: 207, Mismatches: 25, Indels: 64
0.70 0.08 0.22
Matches are distributed among these distances:
17 1 0.00
18 8 0.04
19 29 0.14
20 48 0.23
21 33 0.16
22 52 0.25
23 9 0.04
24 6 0.03
25 8 0.04
27 12 0.06
28 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (21 bp):
TATATATATACTTTATATTTA
Found at i:12617704 original size:52 final size:51
Alignment explanation
Indices: 12617602--12617767 Score: 140
Period size: 52 Copynumber: 3.1 Consensus size: 51
12617592 ACAATATACT
* * * * * *
12617602 TATACTTTATATTATTATATATGTATATATTCTTTATACTAAAACTTTATATA
1 TATACTTTATACT-TTATATATATATATATACTTTATATTTATAC-TTATATA
*
12617655 TATACTTTATAGTTTATATATATATATATACTTTATATTTCATACTTATATA
1 TATACTTTATACTTTATATATATATATATACTTTATATTT-ATACTTATATA
*
12617707 CTTATA-TTTAATACTTATATACTTTATATTATATACTTATATACTTTATA-TTAT-TA
1 --TATACTTT-ATACTT-TATA-TATATA-TATATACTT-TATA-TTTATACTTATATA
12617763 TATAC
1 TATAC
12617768 AAATATACAC
Statistics
Matches: 95, Mismatches: 8, Indels: 18
0.79 0.07 0.15
Matches are distributed among these distances:
52 30 0.32
53 18 0.19
54 13 0.14
55 4 0.04
56 7 0.07
57 13 0.14
58 7 0.07
59 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.01, T:0.54
Consensus pattern (51 bp):
TATACTTTATACTTTATATATATATATATACTTTATATTTATACTTATATA
Found at i:12617828 original size:2 final size:2
Alignment explanation
Indices: 12617815--12617937 Score: 100
Period size: 2 Copynumber: 64.0 Consensus size: 2
12617805 ATTTAGTTTT
* * * *
12617815 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA CTT TA TA TG TC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * *
12617858 TA TA CTT TA TA -A TA -A AA CTT TA TA TA T- TA T- TA T- TA T- TA
1 TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
12617896 T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12617936 TA
1 TA
12617938 ACATCTCAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
1 8 0.08
2 88 0.90
3 2 0.02
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (2 bp):
TA
Found at i:12617884 original size:144 final size:141
Alignment explanation
Indices: 12617595--12617852 Score: 357
Period size: 144 Copynumber: 1.8 Consensus size: 141
12617585 CACACACACA
*** **
12617595 ATATACTTATACTTTATATTATTATATATGTATATATTCTTTATACTAAAACTTTATATATATAC
1 ATATACTTATACTTTATATTATTATATACAAATATACACTTTATACTAAAACTTTATATATATAC
* *
12617660 TTTATAGTTTATATATATATATATACTTTATATTTCATACTTATATACTTATATTTAATACTTAT
66 TTTATAGTTTATATATATATATATACTATATATATCATAC-TATATACTTATATTTAATACTTAT
12617725 ATACTTTATATT
130 ATACTTTATATT
12617737 ATATACTTATATACTTTATATTATTATATACAAATATACACTTTATACTAAAACTTTATATATAT
1 ATATAC-T-TATACTTTATATTATTATATACAAATATACACTTTATACTAAAACTTTATATATAT
*
12617802 ACTATT-TAGTTT-T-TATATTTATATA-TATATATAT-ATA-TATATACTTTATAT
64 ACT-TTATAGTTTATATATATATATATACTATATATATCATACTATATAC-TTATAT
12617853 GTCTATATAC
Statistics
Matches: 104, Mismatches: 8, Indels: 11
0.85 0.07 0.09
Matches are distributed among these distances:
138 7 0.07
139 6 0.06
140 3 0.03
141 7 0.07
142 17 0.16
143 2 0.02
144 60 0.58
145 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.52
Consensus pattern (141 bp):
ATATACTTATACTTTATATTATTATATACAAATATACACTTTATACTAAAACTTTATATATATAC
TTTATAGTTTATATATATATATATACTATATATATCATACTATATACTTATATTTAATACTTATA
TACTTTATATT
Found at i:12619371 original size:30 final size:31
Alignment explanation
Indices: 12619300--12619371 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 31
12619290 ATAAGAGATT
12619300 ATATGACATGAGCTATGTGACCACATGAGAA
1 ATATGACATGAGCTATGTGACCACATGAGAA
* * * * *
12619331 A-GTGAAATGAGTTATGTGATCATATGA-AA
1 ATATGACATGAGCTATGTGACCACATGAGAA
12619360 ATATGACATGAG
1 ATATGACATGAG
12619372 AAATGTGAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
29 3 0.09
30 29 0.88
31 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (31 bp):
ATATGACATGAGCTATGTGACCACATGAGAA
Found at i:12619875 original size:26 final size:27
Alignment explanation
Indices: 12619825--12619875 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
12619815 ATCAATTGGT
* *
12619825 ATGATACTATGTGTGCTCTGTTGTGAA
1 ATGATACTATGTGTGCTATGATGTGAA
*
12619852 ATGATA-TATGTGTTCTATGATGTG
1 ATGATACTATGTGTGCTATGATGTG
12619876 TATAGAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.43
Consensus pattern (27 bp):
ATGATACTATGTGTGCTATGATGTGAA
Found at i:12620425 original size:2 final size:2
Alignment explanation
Indices: 12620418--12620446 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
12620408 TGGGGGTGTT
12620418 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
12620447 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:12621419 original size:21 final size:23
Alignment explanation
Indices: 12621389--12621436 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
12621379 ATATTTAAAC
* *
12621389 TATAATGTATAA-GTATA-TATA
1 TATAAAGTATAATGTACATTATA
12621410 TATAAAGTATAATGTACATTATA
1 TATAAAGTATAATGTACATTATA
12621433 TATA
1 TATA
12621437 CATGCAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 11 0.48
22 4 0.17
23 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (23 bp):
TATAAAGTATAATGTACATTATA
Found at i:12621459 original size:20 final size:20
Alignment explanation
Indices: 12621427--12621494 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
12621417 TATAATGTAC
*
12621427 ATTAT-ATATACATGCAATAT
1 ATTATCATA-ACATACAATAT
*
12621447 ATTATCATAACATTC-AT-T
1 ATTATCATAACATACAATAT
12621465 A-TA-CAT-ACATACAATAT
1 ATTATCATAACATACAATAT
12621482 ATTATCATAACAT
1 ATTATCATAACAT
12621495 TCATTATACA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
15 5 0.12
16 5 0.12
17 4 0.10
18 4 0.10
19 5 0.12
20 14 0.35
21 3 0.08
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (20 bp):
ATTATCATAACATACAATAT
Found at i:12621465 original size:15 final size:16
Alignment explanation
Indices: 12621447--12621506 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 16
12621437 CATGCAATAT
12621447 ATTAT-CATAACATTC
1 ATTATACATAACATTC
*
12621462 ATTATACAT-ACATAC
1 ATTATACATAACATTC
12621477 AATATATTATCATAACATTC
1 -AT-TA-TA-CATAACATTC
12621497 ATTATACATA
1 ATTATACATA
12621507 CATACATGCA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
15 10 0.27
16 9 0.24
17 4 0.11
18 4 0.11
19 5 0.14
20 5 0.14
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTATACATAACATTC
Found at i:12621466 original size:35 final size:35
Alignment explanation
Indices: 12621426--12621512 Score: 156
Period size: 35 Copynumber: 2.5 Consensus size: 35
12621416 GTATAATGTA
* *
12621426 CATTATATATACATGCAATATATTATCATAACATT
1 CATTATACATACATACAATATATTATCATAACATT
12621461 CATTATACATACATACAATATATTATCATAACATT
1 CATTATACATACATACAATATATTATCATAACATT
12621496 CATTATACATACATACA
1 CATTATACATACATACA
12621513 TGCATGCATA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 50 1.00
ACGTcount: A:0.45, C:0.17, G:0.01, T:0.37
Consensus pattern (35 bp):
CATTATACATACATACAATATATTATCATAACATT
Found at i:12621502 original size:20 final size:19
Alignment explanation
Indices: 12621443--12621498 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
12621433 TATACATGCA
12621443 ATATATTATCATAACATTC
1 ATATATTATCATAACATTC
*
12621462 AT-TA-TA-CAT-ACATAC
1 ATATATTATCATAACATTC
12621477 AATATATTATCATAACATTC
1 -ATATATTATCATAACATTC
12621497 AT
1 AT
12621499 TATACATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 5 0.17
16 5 0.17
17 4 0.13
18 4 0.13
19 7 0.23
20 5 0.17
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (19 bp):
ATATATTATCATAACATTC
Found at i:12621507 original size:4 final size:4
Alignment explanation
Indices: 12621500--12622899 Score: 2079
Period size: 4 Copynumber: 350.8 Consensus size: 4
12621490 AACATTCATT
* * *
12621500 ATAC ATAC ATAC ATGC ATGC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
12621548 ATAC ATGC ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
12621596 ATGC ATGC ATAC ATGC ATGC ATGC ATGC ATGC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
12621644 ATGC ATGC ATGC ATGC ATAT ATAC ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12621692 ATGC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
12621740 ATAC ATGC ATGC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
12621788 ATAC ATAC ATAC ATGC ATAC ATAT ATAC ATGC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
12621836 ATAT ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12621884 ATGC ATGC ATGC AT-- ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
12621930 ATGC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12621978 ATAT ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12622026 ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12622074 ATGC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12622122 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
12622170 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12622218 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
12622266 ATAC ATAC ATGC ATAC ATGC ATGC ATGC ATAT ATAT ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12622314 ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC AT-C ATGC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
12622361 ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATGC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
12622409 ATAC ATAC ATGC ATAC ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622457 ATAC ATAC ATAC ATGA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622505 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622553 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622601 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622649 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622697 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622745 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622793 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
12622841 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
12622889 ATAC ATGC ATA
1 ATAC ATAC ATA
12622900 AATAAATATT
Statistics
Matches: 1297, Mismatches: 94, Indels: 10
0.93 0.07 0.01
Matches are distributed among these distances:
2 2 0.00
3 4 0.00
4 1290 0.99
5 1 0.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:12625623 original size:49 final size:46
Alignment explanation
Indices: 12625494--12625645 Score: 130
Period size: 49 Copynumber: 3.2 Consensus size: 46
12625484 AAAAAATTTT
* * * *
12625494 AACTTATAAACTTCTAGTTTACCAT-ATA-ATTCAATTTTATTCCA
1 AACTTGTAAACTTCTAGTTTACCATAATAGATTTAATTTCATTCAA
* **
12625538 AACTTGTAAACTTCTTA-TTTACCATATTATGCGATTTAATTTCATTCGT
1 AACTTGTAAACTTC-TAGTTTACCATA--AT-AGATTTAATTTCATTCAA
* * *
12625587 AACTTGTAAATTTCTAGTTTACCATAACATATGATTTACTATCATTCAA
1 AACTTGTAAACTTCTAGTTTACCAT-A-ATA-GATTTAATTTCATTCAA
12625636 AACTTGTAAA
1 AACTTGTAAA
12625646 TTTTTGGGAC
Statistics
Matches: 86, Mismatches: 13, Indels: 13
0.77 0.12 0.12
Matches are distributed among these distances:
44 21 0.24
45 2 0.02
47 2 0.02
48 2 0.02
49 58 0.67
50 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (46 bp):
AACTTGTAAACTTCTAGTTTACCATAATAGATTTAATTTCATTCAA
Found at i:12626078 original size:24 final size:24
Alignment explanation
Indices: 12626048--12626166 Score: 177
Period size: 24 Copynumber: 5.0 Consensus size: 24
12626038 AAACATAATT
* *
12626048 CATGTCAAGTATCACATCAAAATC
1 CATGTCAAGTATCAGATCAGAATC
* *
12626072 CAGGTCAAGTATAAGATCAGAATC
1 CATGTCAAGTATCAGATCAGAATC
*
12626096 CAAGTCAAGTATCAGATCAGAATC
1 CATGTCAAGTATCAGATCAGAATC
12626120 CATGTC-AGATATCAGATCAGAATC
1 CATGTCAAG-TATCAGATCAGAATC
12626144 CATGTCAAGTATCAGATCAGAAT
1 CATGTCAAGTATCAGATCAGAAT
12626167 TCAAATCAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 2 0.02
24 82 0.95
25 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (24 bp):
CATGTCAAGTATCAGATCAGAATC
Found at i:12628308 original size:17 final size:17
Alignment explanation
Indices: 12628282--12628318 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
12628272 AACAGTGGTT
*
12628282 AACGCCGGTCAACGGTC
1 AACGCAGGTCAACGGTC
12628299 AACGCAGGTCAACGGTC
1 AACGCAGGTCAACGGTC
12628316 AAC
1 AAC
12628319 AGTCGACCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.32, G:0.27, T:0.11
Consensus pattern (17 bp):
AACGCAGGTCAACGGTC
Found at i:12630397 original size:35 final size:35
Alignment explanation
Indices: 12630351--12630417 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
12630341 CGTCACGTAC
* *
12630351 AGTAAGGCCCTGAGCACAAAGTCGAGGAGCCTACA
1 AGTAAGGCCCTGAGCACAAAGCCAAGGAGCCTACA
12630386 AGTAAGGCCCTGAGCACAAAGCCAAGGAGCCT
1 AGTAAGGCCCTGAGCACAAAGCCAAGGAGCCT
12630418 CCAGGTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.27, G:0.28, T:0.10
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACAAAGCCAAGGAGCCTACA
Found at i:12630619 original size:24 final size:24
Alignment explanation
Indices: 12630496--12630619 Score: 142
Period size: 24 Copynumber: 5.2 Consensus size: 24
12630486 AATAAAACAT
12630496 AATTCATGTCAAGTATCATATCA-
1 AATTCATGTCAAGTATCATATCAG
* *
12630519 AAATCGAGGTCAAGTATCATATCAG
1 AATTC-ATGTCAAGTATCATATCAG
* * *
12630544 AATCCAAGTCAAGTATCAGATCAG
1 AATTCATGTCAAGTATCATATCAG
* * * *
12630568 AATCCATGTCAAATATTAGATCAG
1 AATTCATGTCAAGTATCATATCAG
*
12630592 AATTCATGTCAAATATCATATCAG
1 AATTCATGTCAAGTATCATATCAG
12630616 AATT
1 AATT
12630620 TAAATCGAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
23 4 0.05
24 80 0.92
25 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (24 bp):
AATTCATGTCAAGTATCATATCAG
Found at i:12632790 original size:24 final size:24
Alignment explanation
Indices: 12632758--12632805 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
12632748 AACAGTGGTT
12632758 AACGCAGGTCAACGGTCAACAGTC
1 AACGCAGGTCAACGGTCAACAGTC
12632782 AACGCAGGTCAACGGTCAACAGTC
1 AACGCAGGTCAACGGTCAACAGTC
12632806 GATCGTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.25, T:0.12
Consensus pattern (24 bp):
AACGCAGGTCAACGGTCAACAGTC
Found at i:12643946 original size:41 final size:41
Alignment explanation
Indices: 12643481--12643943 Score: 432
Period size: 41 Copynumber: 11.3 Consensus size: 41
12643471 TTTAGTTGTG
* * * **
12643481 TTTTTAGAGCAAACGCCGCTAAAGACTCGTAATTTAGGGGTG
1 TTTTTATA-CAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * *
12643523 TTTTTATAAAAACGCCGCTAAAGACT-ATATTTTAGTGGCA
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * *
12643563 TTTGTATACAAACGCCGCTAAAGAAT-GTACTTTAGTAGCA
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * * * * *
12643603 TTTTTATACAAACGTCGCTACAGAATTGTACTTTATTGGCG
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * * * *
12643644 TTTTTATACAAACACCGCTATAGAATCGTATTTTAGTGGTA
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * * * * * *
12643685 TTTTTATAAAAATGCCGCTATATAATCATACTTTAGTGGCG
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
*
12643726 TTTTTATACAAGCGCCGCTAAAGACTCGTACTTTAGTGGCA
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* * *
12643767 TTTTTATACAAATGCCACTAAAGACTCGTATTTTAGTGGCA
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* ** *
12643808 TTTTT-TACAAATGTTGCTATAAG-GTCGTTA-TTTAGTGGCA
1 TTTTTATACAAACGCCGCTA-AAGACTCG-TACTTTAGTGGCA
* * * * **
12643848 TTTGTGTTTACAAACGTCACTATAGACTCGTACTTTAGTGGGG
1 TTT-T-TATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
* **
12643891 TTTTTATACAAATGCCGCTAAAGACTCGTACTTTAGTGGTG
1 TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
12643932 TTTTTATACAAA
1 TTTTTATACAAA
12643944 TGCTGAAGCT
Statistics
Matches: 349, Mismatches: 64, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
40 93 0.27
41 218 0.62
42 13 0.04
43 25 0.07
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (41 bp):
TTTTTATACAAACGCCGCTAAAGACTCGTACTTTAGTGGCA
Found at i:12650856 original size:10 final size:11
Alignment explanation
Indices: 12650841--12650869 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
12650831 CAAAAAAAGG
12650841 CAAAAAAAAAA
1 CAAAAAAAAAA
12650852 CAAAAAAAAAA
1 CAAAAAAAAAA
12650863 CAAAAAA
1 CAAAAAA
12650870 GCCAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:12657529 original size:12 final size:12
Alignment explanation
Indices: 12657514--12657543 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
12657504 TTCAAAAAAA
12657514 CAAAAAAAAAGC
1 CAAAAAAAAAGC
12657526 CAAAAAAAAAGC
1 CAAAAAAAAAGC
12657538 CAAAAA
1 CAAAAA
12657544 GTCAAAAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.77, C:0.17, G:0.07, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAGC
Found at i:12660187 original size:9 final size:9
Alignment explanation
Indices: 12660173--12660199 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
12660163 TAATAACTCG
12660173 GATATTTCT
1 GATATTTCT
12660182 GATATTTCT
1 GATATTTCT
12660191 GATATTTCT
1 GATATTTCT
12660200 ACCCATACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.56
Consensus pattern (9 bp):
GATATTTCT
Found at i:12662325 original size:13 final size:13
Alignment explanation
Indices: 12662307--12662359 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
12662297 TTAGTAGTGA
*
12662307 TGAGCTATTATGG
1 TGAGCTGTTATGG
12662320 TGAGCTGTTATGG
1 TGAGCTGTTATGG
*
12662333 TGAGCTGTCATGG
1 TGAGCTGTTATGG
*
12662346 TGAGCTGTCATGG
1 TGAGCTGTTATGG
12662359 T
1 T
12662360 TGTTAGATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.17, C:0.11, G:0.36, T:0.36
Consensus pattern (13 bp):
TGAGCTGTTATGG
Found at i:12671447 original size:120 final size:120
Alignment explanation
Indices: 12671234--12671460 Score: 355
Period size: 120 Copynumber: 1.9 Consensus size: 120
12671224 TTAATGGAAG
*
12671234 AAAAATAATATAGGAGCATATAAAAGATCTTAATAGAAGCCATTAAGCTGCTCCGGAAACTAACA
1 AAAAATAATACAGGAGCATATAAAAGATCTTAATAGAAGCCATTAAGCTGCTCCGGAAACTAACA
*** * * * * *
12671299 TTTCACACGTGCGCGCGCGCGCACATATATATATATATATATTAAATCTTCACAT
66 TTTCACACACACACACACACACACATATATATATATATATATTAAATCTTCACAT
* *
12671354 AAAAATATTACAGGAGCATATAAAAGATCTTAATAGAAGCCATTAAGCTGCTCCGGAAACTAATA
1 AAAAATAATACAGGAGCATATAAAAGATCTTAATAGAAGCCATTAAGCTGCTCCGGAAACTAACA
12671419 TTTCACACACACACACACACACACATATATATATATATATAT
66 TTTCACACACACACACACACACACATATATATATATATATAT
12671461 ATATATATAT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (120 bp):
AAAAATAATACAGGAGCATATAAAAGATCTTAATAGAAGCCATTAAGCTGCTCCGGAAACTAACA
TTTCACACACACACACACACACACATATATATATATATATATTAAATCTTCACAT
Found at i:12671509 original size:2 final size:2
Alignment explanation
Indices: 12671443--12671495 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
12671433 ACACACACAC
12671443 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12671485 AT AT AT AT AT A
1 AT AT AT AT AT A
12671496 ATCTTCACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12671811 original size:6 final size:6
Alignment explanation
Indices: 12671800--12671832 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
12671790 TGTAAAGTGA
12671800 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAA
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG AAA
12671833 TATAGGCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:12681078 original size:38 final size:38
Alignment explanation
Indices: 12681027--12681102 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
12681017 CCAAGCCTAG
12681027 ACTTATTAGGTGGATCTTACTTTTACAAGAATTTGACT
1 ACTTATTAGGTGGATCTTACTTTTACAAGAATTTGACT
12681065 ACTTATTAGGTGGATCTTACTTTTACAAGAATTTGACT
1 ACTTATTAGGTGGATCTTACTTTTACAAGAATTTGACT
12681103 TGGACATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (38 bp):
ACTTATTAGGTGGATCTTACTTTTACAAGAATTTGACT
Found at i:12688903 original size:22 final size:22
Alignment explanation
Indices: 12688855--12688912 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
12688845 ATGAAATTTT
* *
12688855 TCCCAAAGGACC--TGTGTATG
1 TCCCGAAGGACCTATGTATATG
12688875 TCCCGAAGGACCTATGTATATG
1 TCCCGAAGGACCTATGTATATG
*
12688897 TCTCGAAGGACCTATG
1 TCCCGAAGGACCTATG
12688913 AAACCCTCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 11 0.33
22 22 0.67
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (22 bp):
TCCCGAAGGACCTATGTATATG
Found at i:12689205 original size:13 final size:14
Alignment explanation
Indices: 12689177--12689210 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
12689167 TCTTATGTTG
*
12689177 ATATCACATATCTT
1 ATATCATATATCTT
12689191 ATATCATAT-TCTT
1 ATATCATATATCTT
12689204 ATATCAT
1 ATATCAT
12689211 CACATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATCATATATCTT
Found at i:12693691 original size:60 final size:60
Alignment explanation
Indices: 12693589--12693735 Score: 170
Period size: 60 Copynumber: 2.5 Consensus size: 60
12693579 AAAAATGGGT
* * * * **
12693589 AAAG-TACACAAATGGTCCTCCGACAATAAGATATTGCTTTGTTGAGTTATTCGGCTATTA
1 AAAGTTACA-AAATGGTCCTCCGACTATAAGACATTGCTTTGTTGAGTCACTCAACTATTA
* * * * *
12693649 GAAGTTACAAAATGGTCCTCCAACTATAGGACGTTGCTTTGTTGAGTCCCTCAACTATTA
1 AAAGTTACAAAATGGTCCTCCGACTATAAGACATTGCTTTGTTGAGTCACTCAACTATTA
*
12693709 AAAGTTACAAAATGGTCATCCGACTAT
1 AAAGTTACAAAATGGTCCTCCGACTAT
12693736 TCATTATGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 68 0.94
61 4 0.06
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (60 bp):
AAAGTTACAAAATGGTCCTCCGACTATAAGACATTGCTTTGTTGAGTCACTCAACTATTA
Found at i:12693993 original size:60 final size:58
Alignment explanation
Indices: 12693926--12694062 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 58
12693916 AGACATGTGA
* * * *
12693926 ATAATCGAGTGACTATTTTATAACTTTTAATAGTTAGAAGACTCAATAAAGCA-TCACCTT
1 ATAATCGAGAGACTATTTTATAACTTTTAATAGTAAG-A-ACTCAACAAAGCAGT-ACCCT
*
12693986 ATAATCGAAAGACCT-TTTTATAACTTTTAATAGTAAGAACTCAACAAAGCAGTACCCT
1 ATAATCGAGAGA-CTATTTTATAACTTTTAATAGTAAGAACTCAACAAAGCAGTACCCT
* *
12694044 ATAATC-AGGGACCATTTTA
1 ATAATCGAGAGACTATTTTA
12694063 CAATTCTTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
56 1 0.02
57 8 0.12
58 22 0.33
59 2 0.03
60 31 0.47
61 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (58 bp):
ATAATCGAGAGACTATTTTATAACTTTTAATAGTAAGAACTCAACAAAGCAGTACCCT
Found at i:12702014 original size:21 final size:21
Alignment explanation
Indices: 12701988--12702028 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
12701978 TATATTGTTT
12701988 CTCTCTCTGCTTCTCCCGCTG
1 CTCTCTCTGCTTCTCCCGCTG
* *
12702009 CTCTCTCTGTTTCTCTCGCT
1 CTCTCTCTGCTTCTCCCGCT
12702029 TCAGTTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.44, G:0.12, T:0.44
Consensus pattern (21 bp):
CTCTCTCTGCTTCTCCCGCTG
Found at i:12702343 original size:15 final size:15
Alignment explanation
Indices: 12702323--12702358 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
12702313 GTATGAATGG
12702323 TGTTGTCGTGGCAAA
1 TGTTGTCGTGGCAAA
* *
12702338 TGTTGTCGTGGTAAG
1 TGTTGTCGTGGCAAA
12702353 TGTTGT
1 TGTTGT
12702359 AAGGTTAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.36, T:0.42
Consensus pattern (15 bp):
TGTTGTCGTGGCAAA
Found at i:12703357 original size:17 final size:17
Alignment explanation
Indices: 12703337--12703379 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
12703327 TAATCTAATA
*
12703337 AATGAACTAATTTGTTG
1 AATGAACTAATTTGATG
12703354 AATGAACTAATTTGATG
1 AATGAACTAATTTGATG
12703371 AATGAACTA
1 AATGAACTA
12703380 GATTATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35
Consensus pattern (17 bp):
AATGAACTAATTTGATG
Found at i:12706841 original size:54 final size:53
Alignment explanation
Indices: 12706774--12707382 Score: 404
Period size: 54 Copynumber: 11.3 Consensus size: 53
12706764 GTTGAGATGT
* * * *
12706774 ACACGTAGTGACTATATAGTCATTCATAAACATATTACAAATTCTGTGGTTCGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGTGGTT-GC
* *
12706828 ACACAAAGTGACTATATGGTCGTTCATCAACATATTATAAATTCTGTGGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGTGGTTGC
** * * * *
12706881 ACACATAGTTCCTATACGG-CTATTCATCAACATATGATGAATTCCGTGGGTTGC
1 ACACATAGTGACTATATGGTC-ATTCATCAACATATTATAAATTCTGT-GGTTGC
** * * * *
12706935 ACACATAGTTCCTATATGGTCATTCATCAACATATGATGAATTTTGTGGGTGGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGT-GGTTGC
* * * * * *
12706989 ACACATAGTGCCTATACGTTCGTTCATCAACATATGATGAATT-TCGTAGGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCT-GT-GGTTGC
* * ** * * * *
12707043 ACACATGGTGCCTATACAGTCGTTCATCAACATATGATGAATTCCGTGGGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGT-GGTTGC
* * * * * * * * *
12707097 TCACATAGT-ACCTATACGGTCGTTTATCAACATATGATGAATTTTTTGGGTTGT
1 ACACATAGTGA-CTATATGGTCATTCATCAACATATTATAAATTCTGT-GGTTGC
* * * * * * *
12707151 ACACATAGGGTCTATACGATCATTCGTCAACATATGATGAATTTCT-TGTGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTAT-AAATTCTGTG-GTTGC
* * * *
12707205 ACACATAGT-ACCTATACGGTCGTTCATCAACATATGATGAATTCCT-TGGGTTGC
1 ACACATAGTGA-CTATATGGTCATTCATCAACATATTATAAATT-CTGT-GGTTGC
* * * * * * * *
12707259 GCACAAAGTGCCTATATGGTCGTTCATTAACATATGATGAATTCCGTGGGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGT-GGTTGC
* * * * * * *
12707313 ACATATAATGCCTATACGGTCGTTCATCAACATATGATGAATT-TCGTGGGTTGC
1 ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCT-GT-GGTTGC
*
12707367 ACACATATTGACTATA
1 ACACATAGTGACTATA
12707383 GTACACATAT
Statistics
Matches: 468, Mismatches: 72, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.00
53 45 0.10
54 416 0.89
55 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (53 bp):
ACACATAGTGACTATATGGTCATTCATCAACATATTATAAATTCTGTGGTTGC
Found at i:12707031 original size:108 final size:108
Alignment explanation
Indices: 12706813--12707382 Score: 698
Period size: 108 Copynumber: 5.3 Consensus size: 108
12706803 ACATATTACA
* * * * *
12706813 AATTCTGT-GGTTCGCACACAAAGTGACTATATGGTCGTTCATCAACATATTATAAATTCTGT-G
1 AATTCCGTGGGTT-GCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCTGTGG
* *
12706876 GTTGCACACATAGTTCCTATACGG-CTATTCATCAACATATGATG
65 GTTGCACACATAGTACCTATACGGTC-GTTCATCAACATATGATG
* * *
12706920 AATTCCGTGGGTTGCACACATAGTTCCTATATGGTCATTCATCAACATATGATGAATTTTGTGGG
1 AATTCCGTGGGTTGCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCTGTGGG
* * *
12706985 TGGCACACATAGTGCCTATACGTTCGTTCATCAACATATGATG
66 TTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
* * * ** *
12707028 AATTTCGTAGGTTGCACACATGGTGCCTATACAGTCGTTCATCAACATATGATGAATTCCGTGGG
1 AATTCCGTGGGTTGCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCTGTGGG
* *
12707093 TTGCTCACATAGTACCTATACGGTCGTTTATCAACATATGATG
66 TTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
*** * * * * * * * *
12707136 AATTTTTTGGGTTGTACACATAGGGTCTATACGATCATTCGTCAACATATGATGAATTTCT-TGT
1 AATTCCGTGGGTTGCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAA-TTCTGTGG
12707200 GTTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
65 GTTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
* * * * *
12707244 AATTCCTTGGGTTGCGCACAAAGTGCCTATATGGTCGTTCATTAACATATGATGAATTCCGTGGG
1 AATTCCGTGGGTTGCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCTGTGGG
* * *
12707309 TTGCACATATAATGCCTATACGGTCGTTCATCAACATATGATG
66 TTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
* * *
12707352 AATTTCGTGGGTTGCACACATATTGACTATA
1 AATTCCGTGGGTTGCACACATAGTGCCTATA
12707383 GTACACATAT
Statistics
Matches: 394, Mismatches: 64, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
107 52 0.13
108 338 0.86
109 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (108 bp):
AATTCCGTGGGTTGCACACATAGTGCCTATATGGTCGTTCATCAACATATGATGAATTCTGTGGG
TTGCACACATAGTACCTATACGGTCGTTCATCAACATATGATG
Found at i:12707084 original size:162 final size:160
Alignment explanation
Indices: 12706785--12707373 Score: 723
Period size: 162 Copynumber: 3.6 Consensus size: 160
12706775 CACGTAGTGA
* * * ** * * *
12706785 CTATATAGTCATTCATAAACATATTACAAATTCTGT-GGTTCGCACACAAAGTGACTATATGGTC
1 CTATATGGTCATTCATCAACATATGATGAATTCTGTGGGTT-GCACACATAGTGCCTATACGGTC
* * * * *
12706849 GTTCATCAACATATTAT-AAATTCTGTGGTTGCACACATAGTTCCTATACGGCTATTCATCAACA
65 GTTCATCAACATATGATGAATTTC-GTGGTTGCACACATAGTACCTATACGTC-GTTCATCAACA
*
12706913 TATGATGAATTCCGTGGGTTGCACACATAGTTC
128 TATGATGAATTCCGTGGGTTGCACACATAGTAC
* * *
12706946 CTATATGGTCATTCATCAACATATGATGAATTTTGTGGGTGGCACACATAGTGCCTATACGTTCG
1 CTATATGGTCATTCATCAACATATGATGAATTCTGTGGGTTGCACACATAGTGCCTATACGGTCG
* *
12707011 TTCATCAACATATGATGAATTTCGTAGGTTGCACACATGGTGCCTATACAGTCGTTCATCAACAT
66 TTCATCAACATATGATGAATTTCGT-GGTTGCACACATAGTACCTATAC-GTCGTTCATCAACAT
*
12707076 ATGATGAATTCCGTGGGTTGCTCACATAGTAC
129 ATGATGAATTCCGTGGGTTGCACACATAGTAC
* * * * * * * * * *
12707108 CTATACGGTCGTTTATCAACATATGATGAATTTTTTGGGTTGTACACATAGGGTCTATACGATCA
1 CTATATGGTCATTCATCAACATATGATGAATTCTGTGGGTTGCACACATAGTGCCTATACGGTCG
* *
12707173 TTCGTCAACATATGATGAATTTCTTGTGTTGCACACATAGTACCTATACGGTCGTTCATCAACAT
66 TTCATCAACATATGATGAATTTCGTG-GTTGCACACATAGTACCTATAC-GTCGTTCATCAACAT
* * * *
12707238 ATGATGAATTCCTTGGGTTGCGCACAAAGTGC
129 ATGATGAATTCCGTGGGTTGCACACATAGTAC
* * * * *
12707270 CTATATGGTCGTTCATTAACATATGATGAATTCCGTGGGTTGCACATATAATGCCTATACGGTCG
1 CTATATGGTCATTCATCAACATATGATGAATTCTGTGGGTTGCACACATAGTGCCTATACGGTCG
12707335 TTCATCAACATATGATGAATTTCGTGGGTTGCACACATA
66 TTCATCAACATATGATGAATTTCGT-GGTTGCACACATA
12707374 TTGACTATAG
Statistics
Matches: 369, Mismatches: 53, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
161 68 0.18
162 298 0.81
163 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (160 bp):
CTATATGGTCATTCATCAACATATGATGAATTCTGTGGGTTGCACACATAGTGCCTATACGGTCG
TTCATCAACATATGATGAATTTCGTGGTTGCACACATAGTACCTATACGTCGTTCATCAACATAT
GATGAATTCCGTGGGTTGCACACATAGTAC
Found at i:12713624 original size:54 final size:53
Alignment explanation
Indices: 12713566--12714153 Score: 483
Period size: 54 Copynumber: 10.9 Consensus size: 53
12713556 CTATACGATT
* * *
12713566 ATTCATAAACATATTATGAATTCTGTGGTT-CATACACAAAGTGACTATATTGTC
1 ATTCATCAACATATGATGAATTCTGTGGTTGC--ACACAAAGTGACTATATGGTC
* * * * *
12713620 ATTCATCAATATATGATGAATTCTATGGGTTGCACACATAGTGCCTATGTGGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGACTATATGGTC
* * * ** *
12713674 GTTCATCAACATATGATGAATTCCGTGGGTTGCACACATAGTGTTTATACGGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGACTATATGGTC
* * * *
12713728 GTTCATCAACATAAGATGAATTCTGTGGGTTGCACACATAA-TGCCTATACGGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACA-AAGTGACTATATGGTC
* * * * *
12713782 GTTCATCAACATATGATGAATTCCATG-GGTTGCACACATAGTGTCTATATGTTT
1 ATTCATCAACATATGATGAATT-C-TGTGGTTGCACACAAAGTGACTATATGGTC
* * * *
12713836 GTTCATCAACATATGATGAATTATGTGGGTTGCACAC-ATGTG-CTTATACGGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGAC-TATATGGTC
* * * *
12713889 ATTTATCAACATATGATGAATTCCGTGAGTTGCACACATAGTG-CATACATGGTC
1 ATTCATCAACATATGATGAATTCTGTG-GTTGCACACAAAGTGAC-TATATGGTC
* * * * * *
12713943 ATTCATCAACATATGATGAAGTATATAGGTTGCACACATAGTGCCTATACGGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGACTATATGGTC
* * * * * **
12713997 GTTCATCAATATATGATGAATTGTGTGGGTTGTACACATAA-TGCCTATACAGTC
1 ATTCATCAACATATGATGAATTCTGT-GGTTGCACACA-AAGTGACTATATGGTC
* * * *
12714051 GA-TCATCAACATATGATGAATTCTGTGGGTTGCACATATAGTGCCTATACGGTC
1 -ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGACTATATGGTC
* * *
12714105 GA-TCATCAACATAAGATGAATTCTGTGGGTTGCACACATAGTGCCTATA
1 -ATTCATCAACATATGATGAATTCTGT-GGTTGCACACAAAGTGACTATA
12714154 GTACACATAT
Statistics
Matches: 451, Mismatches: 67, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.01
53 42 0.09
54 393 0.87
55 9 0.02
56 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (53 bp):
ATTCATCAACATATGATGAATTCTGTGGTTGCACACAAAGTGACTATATGGTC
Found at i:12713686 original size:108 final size:107
Alignment explanation
Indices: 12713542--12714153 Score: 696
Period size: 108 Copynumber: 5.7 Consensus size: 107
12713532 TTCGTTGAGA
* * * ** * * *
12713542 TGCACACGTAGTACCTATACGATTATTCATAAACATATTATGAATTCTGTGGTT-CATACACAAA
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGTTGC--ACACATA
* ** * *
12713606 GTGACTATATTGTCATTCATCAATATATGATGAATTCTATGGGT
64 GTGTCTATACGGTCATTCATCAACATATGATGAATTCTGTGGGT
** *
12713650 TGCACACATAGTGCCTATGTGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACATAG
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGT-GGTTGCACACATAG
* * *
12713715 TGTTTATACGGTCGTTCATCAACATAAGATGAATTCTGTGGGT
65 TGTCTATACGGTCATTCATCAACATATGATGAATTCTGTGGGT
*
12713758 TGCACACATAATGCCTATACGGTCGTTCATCAACATATGATGAATTCCATG-GGTTGCACACATA
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATT-C-TGTGGTTGCACACATA
* * ** *
12713822 GTGTCTATATGTTTGTTCATCAACATATGATGAATTATGTGGGT
64 GTGTCTATACGGTCATTCATCAACATATGATGAATTCTGTGGGT
* * * *
12713866 TGCACACAT-GTGCTTATACGGTCATTTATCAACATATGATGAATTCCGTGAGTTGCACACATAG
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTG-GTTGCACACATAG
* * * *
12713930 TG-C-ATACATGGTCATTCATCAACATATGATGAAGTATATAGGT
65 TGTCTATAC--GGTCATTCATCAACATATGATGAATTCTGTGGGT
* * * *
12713973 TGCACACATAGTGCCTATACGGTCGTTCATCAATATATGATGAATTGTGTGGGTTGTACACATAA
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGT-GGTTGCACACATAG
* *
12714038 TGCCTATACAGTCGA-TCATCAACATATGATGAATTCTGTGGGT
65 TGTCTATACGGTC-ATTCATCAACATATGATGAATTCTGTGGGT
* * *
12714081 TGCACATATAGTGCCTATACGGTCGATCATCAACATAAGATGAATTCTGTGGGTTGCACACATAG
1 TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGT-GGTTGCACACATAG
*
12714146 TGCCTATA
65 TGTCTATA
12714154 GTACACATAT
Statistics
Matches: 430, Mismatches: 61, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
105 4 0.01
106 3 0.01
107 84 0.20
108 325 0.76
109 8 0.02
110 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.33
Consensus pattern (107 bp):
TGCACACATAGTGCCTATACGGTCGTTCATCAACATATGATGAATTCTGTGGTTGCACACATAGT
GTCTATACGGTCATTCATCAACATATGATGAATTCTGTGGGT
Found at i:12714113 original size:269 final size:270
Alignment explanation
Indices: 12713599--12714153 Score: 770
Period size: 269 Copynumber: 2.1 Consensus size: 270
12713589 TGTGGTTCAT
* * ** * * *
12713599 ACACAAAGTGACTATATTGTCATTCATCAATATATGATGAATTCTATGGGTTGCACACATAGTGC
1 ACACATAGTGCCTATACGGTCATTCATCAACATATGATGAATTCCATGAGTTGCACACATAGTGC
* ** * * * * * **
12713664 CTATGTGGTCGTTCATCAACATATGATGAATTCCGTGGGTTGCACACATAGTGTTTATACGGTCG
66 ATACATGGTCATTCATCAACATATGATGAAGTACATAGGTTGCACACATAGTGCCTATACGGTCG
* *
12713729 TTCATCAACATAAGATGAATTCTGTGGGTTGCACACATAATGCCTATACGGTCGTTCATCAACAT
131 TTCATCAACATAAGATGAATTCTGTGGGTTGCACACATAATGCCTATACAGTCGATCATCAACAT
* * * * * *
12713794 ATGATGAATTCCATGGGTTGCACACATAGTGTCTATATGTTTGTTCATCAACATATGATGAATTA
196 ATGATGAATTCCATGGGTTGCACACATAGTGCCTATACGGTCGATCATCAACATAAGATGAATTA
12713859 TGTGGGTTGC
261 TGTGGGTTGC
* * *
12713869 ACACAT-GTGCTTATACGGTCATTTATCAACATATGATGAATTCCGTGAGTTGCACACATAGTGC
1 ACACATAGTGCCTATACGGTCATTCATCAACATATGATGAATTCCATGAGTTGCACACATAGTGC
*
12713933 ATACATGGTCATTCATCAACATATGATGAAGTATATAGGTTGCACACATAGTGCCTATACGGTCG
66 ATACATGGTCATTCATCAACATATGATGAAGTACATAGGTTGCACACATAGTGCCTATACGGTCG
* * * *
12713998 TTCATCAATATATGATGAATTGTGTGGGTTGTACACATAATGCCTATACAGTCGATCATCAACAT
131 TTCATCAACATAAGATGAATTCTGTGGGTTGCACACATAATGCCTATACAGTCGATCATCAACAT
** * *
12714063 ATGATGAATTCTGTGGGTTGCACATATAGTGCCTATACGGTCGATCATCAACATAAGATGAATTC
196 ATGATGAATTCCATGGGTTGCACACATAGTGCCTATACGGTCGATCATCAACATAAGATGAATTA
12714128 TGTGGGTTGC
261 TGTGGGTTGC
12714138 ACACATAGTGCCTATA
1 ACACATAGTGCCTATA
12714154 GTACACATAT
Statistics
Matches: 246, Mismatches: 38, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
269 233 0.95
270 13 0.05
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (270 bp):
ACACATAGTGCCTATACGGTCATTCATCAACATATGATGAATTCCATGAGTTGCACACATAGTGC
ATACATGGTCATTCATCAACATATGATGAAGTACATAGGTTGCACACATAGTGCCTATACGGTCG
TTCATCAACATAAGATGAATTCTGTGGGTTGCACACATAATGCCTATACAGTCGATCATCAACAT
ATGATGAATTCCATGGGTTGCACACATAGTGCCTATACGGTCGATCATCAACATAAGATGAATTA
TGTGGGTTGC
Found at i:12720468 original size:39 final size:39
Alignment explanation
Indices: 12720414--12720496 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
12720404 TGTGGATGAT
* *
12720414 ATGCCGTGGCAATCTTGTGACGGACTACATACCTCTTTA
1 ATGCCATGACAATCTTGTGACGGACTACATACCTCTTTA
*
12720453 ATGCCATGACAATCTTGTGACGGACTCCATACCTCTTTA
1 ATGCCATGACAATCTTGTGACGGACTACATACCTCTTTA
12720492 ATGCC
1 ATGCC
12720497 TTGGAAATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (39 bp):
ATGCCATGACAATCTTGTGACGGACTACATACCTCTTTA
Found at i:12725619 original size:16 final size:16
Alignment explanation
Indices: 12725598--12725629 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
12725588 CGAGTTCTTA
12725598 ACGAGCCGAAATGAGC
1 ACGAGCCGAAATGAGC
12725614 ACGAGCCGAAATGAGC
1 ACGAGCCGAAATGAGC
12725630 TACTCGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.31, T:0.06
Consensus pattern (16 bp):
ACGAGCCGAAATGAGC
Found at i:12728844 original size:16 final size:16
Alignment explanation
Indices: 12728823--12728868 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
12728813 ACTAATTATC
12728823 ATTCAAACAAACTAAAA
1 ATTCAAACAAA-TAAAA
*
12728840 A-TCAAACACATAAAA
1 ATTCAAACAAATAAAA
12728855 ATTCAAACTAAATA
1 ATTCAAAC-AAATA
12728869 TTAACCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 6 0.24
16 14 0.56
17 5 0.20
ACGTcount: A:0.63, C:0.17, G:0.00, T:0.20
Consensus pattern (16 bp):
ATTCAAACAAATAAAA
Found at i:12730849 original size:21 final size:22
Alignment explanation
Indices: 12730801--12730855 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 22
12730791 CCCTCTAGGG
*
12730801 GTATCGATGCACATTCAAGGAAT
1 GTATCGATACACATTCAAGG-AT
*
12730824 GTATCGGTACACATTCAAGG-T
1 GTATCGATACACATTCAAGGAT
12730845 GTATCGATACA
1 GTATCGATACA
12730856 TAGCAAGGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 11 0.38
23 18 0.62
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (22 bp):
GTATCGATACACATTCAAGGAT
Found at i:12736885 original size:16 final size:17
Alignment explanation
Indices: 12736866--12736901 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
12736856 TTTATATTCG
12736866 ATTATTTT-AATCGAAT
1 ATTATTTTAAATCGAAT
12736882 ATTATTTTGAAATCGAAT
1 ATTATTTT-AAATCGAAT
12736900 AT
1 AT
12736902 AAAATCTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (17 bp):
ATTATTTTAAATCGAAT
Found at i:12744913 original size:20 final size:20
Alignment explanation
Indices: 12744876--12744914 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12744866 CATCTCATCA
*
12744876 TATAACTGTATGACAGAACT
1 TATAACTGTATAACAGAACT
* *
12744896 TATAACTTTATAATAGAAC
1 TATAACTGTATAACAGAAC
12744915 CATGCAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (20 bp):
TATAACTGTATAACAGAACT
Found at i:12746393 original size:22 final size:20
Alignment explanation
Indices: 12746346--12746393 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
12746336 GAACGAAATA
* *
12746346 AAATAAAAAATTAAAACAAG
1 AAATAAAAAATAAAAACAAC
12746366 ATAATAAAAAATAAAAAACAATC
1 A-AATAAAAAAT-AAAAACAA-C
12746389 AAATA
1 AAATA
12746394 TAGAAAGGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 11 0.48
23 1 0.04
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (20 bp):
AAATAAAAAATAAAAACAAC
Found at i:12747011 original size:21 final size:22
Alignment explanation
Indices: 12746971--12747013 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
12746961 ATTTGAAAAT
*
12746971 AATAAAGGAAATACCGATACTC
1 AATAAAGGAAATACCAATACTC
*
12746993 AATAAAGG-AGTACCAATACTC
1 AATAAAGGAAATACCAATACTC
12747014 CCTGTCCTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (22 bp):
AATAAAGGAAATACCAATACTC
Found at i:12751687 original size:15 final size:16
Alignment explanation
Indices: 12751651--12751689 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
12751641 CTAGTTAGAA
*
12751651 GTTAGTAAATGTTAGTT
1 GTTAG-AAAAGTTAGTT
12751668 GTTAGAAAAGTTAG-T
1 GTTAGAAAAGTTAGTT
12751683 GTTAGAA
1 GTTAGAA
12751690 GTTAATCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 8 0.38
17 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (16 bp):
GTTAGAAAAGTTAGTT
Found at i:12752674 original size:181 final size:183
Alignment explanation
Indices: 12752404--12752820 Score: 640
Period size: 182 Copynumber: 2.3 Consensus size: 183
12752394 ACCAATATTG
* * * * **
12752404 AAATGATAAAACCGGTAAAGCGGTACCGAATATATTTAAAGTGTCGGTACTTTAATATAAGGATC
1 AAATGATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATC
* *
12752469 GACACTTCGTTAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTCAAAAAA
66 GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
*
12752534 TATATCGATC-AACAACGATATAACAAGTAAAAATATGATAAAACTGGTATCA
131 TATATCGATCAAACAACGATATAACAAGTAAAAATATGATAAAACGGGTATCA
* * * *
12752586 AAATGATGAAACCGGTAAAACGCTATCGGATATATTGAAAGTGTTGAAACTTT-ATATAAGGATC
1 AAATGATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATC
*
12752650 GACACTTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
66 GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* *
12752715 TGTATCGATCAAACAACGATATAACAGGTAAAAATATGATAAAACGGGTATCA
131 TATATCGATCAAACAACGATATAACAAGTAAAAATATGATAAAACGGGTATCA
* * * *
12752768 AAATGATAAAACCGGTAAAATGATACCGGATATATTAAAAATGTCGATACTTT
1 AAATGATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTT
12752821 CGTAAGTACG
Statistics
Matches: 211, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
181 82 0.39
182 129 0.61
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (183 bp):
AAATGATAAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGAAACTTTAATATAAGGATC
GACACTTCGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
TATATCGATCAAACAACGATATAACAAGTAAAAATATGATAAAACGGGTATCA
Found at i:12752764 original size:20 final size:19
Alignment explanation
Indices: 12752741--12752787 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
12752731 CGATATAACA
*
12752741 GGTAAAAATATGATAAAACG
1 GGTAAAAA-ATGATAAAACC
*
12752761 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
12752781 GGTAAAA
1 GGTAAAA
12752788 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:12754821 original size:184 final size:184
Alignment explanation
Indices: 12754508--12754856 Score: 610
Period size: 184 Copynumber: 1.9 Consensus size: 184
12754498 ATATCAGCTT
* *
12754508 AAAGTGTCGATACCTTTTCAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAATTATAATGTA
1 AAAGTGTCGATACCTTTTCAAAAAGTGTCAATTGAAAAAACATCGGAACCCACAATTATAATGTA
* *
12754573 ATAGGTAATTTTGTAATATAACTGGTATAGATATACCGGTTTTATGAGAGAATAGGTATACAACC
66 ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTATACAACC
*
12754638 TATTTCGACACTTTTTAATATTGTGTCGC-TACTTTATGTCCAGAATGGATGAAA
131 TATATCGACACTTTTTAATATTGTGTC-CATACTTTATGTCCAGAATGGATGAAA
12754692 AAAGTGTCGATACCTTTTCAAAAAGTGTCAATTGAAAAAACATCGGAACCCACAATTATAATGTA
1 AAAGTGTCGATACCTTTTCAAAAAGTGTCAATTGAAAAAACATCGGAACCCACAATTATAATGTA
* * *
12754757 ATAGGTAATTTTTTAATATAACCGGTATAAATATATCGGTTTTATGAGAGAATAGGTCTACAACC
66 ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTATACAACC
12754822 TATATCGACACTTTTTAATATTGTGTCCATACTTT
131 TATATCGACACTTTTTAATATTGTGTCCATACTTT
12754857 TAAGTAACGC
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 1 0.01
184 155 0.99
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (184 bp):
AAAGTGTCGATACCTTTTCAAAAAGTGTCAATTGAAAAAACATCGGAACCCACAATTATAATGTA
ATAGGTAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTATACAACC
TATATCGACACTTTTTAATATTGTGTCCATACTTTATGTCCAGAATGGATGAAA
Found at i:12758138 original size:181 final size:182
Alignment explanation
Indices: 12757556--12758554 Score: 1672
Period size: 180 Copynumber: 5.5 Consensus size: 182
12757546 TTTTACCTTT
* * * * *
12757556 TTTAAAAGAGAAGAAATTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATTGATCTAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
12757621 AACAATATAACAGGTAAAAATATGACAAAACC-GTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTAC
*
12757685 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACCCTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
* *
12757737 TTTAAAAAAGAAG-AGTTATAGCGCCAATAAGGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
12757801 AACAATATAACAGGTAAAAATATGACAAAACC-GTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTAC
*
12757865 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACCCTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
* * *
12757917 TTTAAAAAAGAAG-AGTTATAGCGCCAATAAGGTCTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
12757981 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACGGGTAAAGCATTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTAC
12758046 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
12758098 TTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
12758162 AACAATATAACATGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCACTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTAC
*
12758227 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
*
12758277 -TTAATAAGAGAAGAAGTTATAGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * *
12758341 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCTCTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTA
* * *
12758406 TCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTTGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
*
12758459 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
12758524 AACAATATAACATGTAATAATATGACAAAAC
66 AACAATATAACAGGTAAAAATATGACAAAAC
12758555 AGATAAAGCG
Statistics
Matches: 783, Mismatches: 29, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
178 4 0.01
179 18 0.02
180 407 0.52
181 253 0.32
182 97 0.12
183 4 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (182 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAA
Found at i:12758297 original size:361 final size:363
Alignment explanation
Indices: 12757556--12759100 Score: 2455
Period size: 361 Copynumber: 4.3 Consensus size: 363
12757546 TTTTACCTTT
* * * * *
12757556 TTTAAAAGAGAAGAAATTATATCGTCAATAAAGTGTCGATACTTTATAAAAATGTATTGATCTAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
12757621 AACAATATAACAGGTAAAAATATGACAAAACC-GTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* * *
12757685 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACCCTTTTGGAATTTAAAAAAGAAG
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
*
12757750 -AGTTATAGCGCCAATAAGGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAG
196 AAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAG
12757814 GTAAAAATATGACAAAACCG-TCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAA
261 GTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAA
* *
12757878 AGTGTCGATAATTTATTATACGTATCGACCCTTTTGGAA
326 AGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAA
* * *
12757917 TTTAAAAAAGAAG-AGTTATAGCGCCAATAAGGTCTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* **
12757981 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACGGGTAAAGCATTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
12758046 CGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGACACTTTTGGAATTTAAAAGAGAAG
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
*
12758111 -AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAT
196 AAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAG
*
12758175 GTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCACTACCGGTTATGTTGAA
261 GTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAA
12758240 AGTGTCGATAATTTATTATAAGTATCG-ACTTTTGGAA
326 AGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAA
*
12758277 -TTAATAAGAGAAGAAGTTATAGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * *
12758341 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCTCTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
* *
12758406 TCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTTGAATTTAAAAGAGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAA
*
12758471 GAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAACAATATAACA
195 GAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACA
* * *
12758536 TGT----A-AT------A---A--T----ATGACAAAACAGATAAAGCGCTACCGGTTATGTTAA
260 GGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGA
*
12758581 AAGTGTCGCTAATTTATTATAAGTATCGACACTTTTGGAA
325 AAGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAA
12758621 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
12758686 AACAATATAACAGGTAAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
66 AACAATATAACAGGT-AAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
*
12758751 CCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA-TTAATAAGAGA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAA-AAGAGA
12758815 AGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAAC
194 AGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAAC
* *
12758880 AGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTG
259 AGGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTG
12758945 AAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
324 AAAGTGTCGATAATTTATTATAAGTATCGA-ACTTTTGGAA
12758986 -TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * * ** **
12759050 TAATAATATAACATGTAAAAATATGATAAAATTGGTCTATAAATGACAAAA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAA
12759101 GGTGAACACA
Statistics
Matches: 1098, Mismatches: 55, Indels: 59
0.91 0.05 0.05
Matches are distributed among these distances:
342 60 0.05
344 87 0.08
345 174 0.16
346 1 0.00
348 1 0.00
349 1 0.00
350 2 0.00
351 1 0.00
356 1 0.00
357 2 0.00
358 1 0.00
359 4 0.00
360 92 0.08
361 358 0.33
362 134 0.12
364 34 0.03
365 145 0.13
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (363 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
AAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAG
GTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAA
AGTGTCGATAATTTATTATAAGTATCGAACTTTTGGAA
Found at i:12758586 original size:162 final size:163
Alignment explanation
Indices: 12758383--12758717 Score: 575
Period size: 162 Copynumber: 2.1 Consensus size: 163
12758373 CGGTCTCGAA
* * *
12758383 ATGACAAAACATGTAAAGCTCTATCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
1 ATGACAAAACATGTAAAGCGCTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCGA
*
12758448 CACTTTTTGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
* *
12758513 TATAGATCCATAACAATATAACATGT-AATAAT
131 TATAGATCCATAACAATATAACAGGTAAAAAAT
*
12758545 ATGACAAAACA-GATAAAGCGCTACCGGTTATGTTAAAAGTGTCGCTAATTTATTATAAGTATCG
1 ATGACAAAACATG-TAAAGCGCTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCG
12758609 ACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
65 ACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
*
12758674 GTATCGATCCATAACAATATAACAGGTAAAAAAT
130 GTATAGATCCATAACAATATAACAGGTAAAAAAT
12758708 ATGACAAAAC
1 ATGACAAAAC
12758718 CGGTCTCGAA
Statistics
Matches: 163, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
161 1 0.01
162 147 0.90
163 15 0.09
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (163 bp):
ATGACAAAACATGTAAAGCGCTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
TATAGATCCATAACAATATAACAGGTAAAAAAT
Found at i:12758888 original size:527 final size:523
Alignment explanation
Indices: 12758022--12759080 Score: 1868
Period size: 527 Copynumber: 2.0 Consensus size: 523
12758012 CGGTCTCGAA
* * * * *
12758022 ATGACAAAACGGGTAAAGCATTACCGGTTATGTTGAAAGTGTCGATAATTTATTATACGTATCGA
1 ATGACAAAACAGATAAAGCACTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCGA
12758087 CACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGT
66 CACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGT
*
12758152 ATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGT
131 ATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGT
*
12758217 AAAGCACTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAAT
196 AAAGCACTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAAT
*
12758282 AAGAGAAGAAGTTATAGCGCCAATAATGTGTCGATACTTTATAAAAATGTATCGATCCATAACAA
261 AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAA
* * * * *
12758347 TATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATGTAAAGCTCTATCGGTT
326 TATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGAT
*
12758412 ATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTTGAATTTAA-AAGAGAAGAAGT
391 ATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA-TTAATAAGAGAAGAAGT
12758476 TATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAACAATATAACATGTAA
455 TATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAACAATATAACATGTAA
*
12758541 TAAT
520 AAAT
* *
12758545 ATGACAAAACAGATAAAGCGCTACCGGTTATGTTAAAAGTGTCGCTAATTTATTATAAGTATCGA
1 ATGACAAAACAGATAAAGCACTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCGA
12758610 CACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTTAAAAGAGAAG-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
*
12758675 TATCGATCCATAACAATATAACAGGTAAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAG
130 TATCGATCCATAACAATATAACAGGT-AAAAATATGACAAAACCGATCTCGAAATGACAAAACAG
*
12758740 GTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAAT
194 GTAAAGCACTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAAT
12758805 TAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
257 TAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATA
12758870 ACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACC
322 ACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACC
12758935 GGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAGA
387 GGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAGA
* *
12759000 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACATG
452 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAACAATATAACATG
12759065 TAAAAAT
517 TAAAAAT
*
12759072 ATGATAAAA
1 ATGACAAAA
12759081 TTGGTCTATA
Statistics
Matches: 509, Mismatches: 22, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
523 82 0.16
524 65 0.13
525 87 0.17
526 4 0.01
527 271 0.53
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (523 bp):
ATGACAAAACAGATAAAGCACTACCGGTTATGTTAAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAATTTAAAAGAGAAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGT
ATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGATCTCGAAATGACAAAACAGGT
AAAGCACTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACTTTTGGAATTAAT
AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAA
TATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGAT
ATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAGAAGTT
ATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAACAATATAACATGTAAA
AAT
Found at i:12758893 original size:345 final size:344
Alignment explanation
Indices: 12758203--12759100 Score: 1372
Period size: 345 Copynumber: 2.6 Consensus size: 344
12758193 CGATCTCGAA
* *
12758203 ATGACAAAACAGGTAAAGCACTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG-
1 ATGACAAAACAGATAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
*
12758267 -ACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAATGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
*
12758331 TATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACATG
131 TATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGG
* * * *
12758396 TAAAGCTCTATCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTTGAATT
196 TAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATT
12758461 TAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAA
261 TAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAA
* *
12758526 CAATATAACATGTAATAAT
326 CAATATAACAGGTAAAAAT
* *
12758545 ATGACAAAACAGATAAAGCGCTACCGGTTATGTTAAAAGTGTCGCTAATTTATTATAAGTATCGA
1 ATGACAAAACAGATAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
12758610 CACTTTTGGAATTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
66 CACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
*
12758674 GTATCGATCCATAACAATATAACAGGTAAAAAATATGACAAAACCGGTCTCGAAATGACAAAACA
130 GTATCGATCCATAACAATATAACATGT-AAAAATATGACAAAACCGGTCTCGAAATGACAAAACA
12758739 GGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
194 GGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
12758804 -TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
259 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCA
12758868 TAACAATATAACAGGTAAAAAT
323 TAACAATATAACAGGTAAAAAT
*
12758890 ATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGA
1 ATGACAAAA-------C---A-G-------A--TAAAGCGCTACCGGTTATGTTGAAAGTGTCGA
12758955 TAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGT
46 TAATTTATTATAAGTATCGACACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGT
* * **
12759020 GTCGATACTTTATAAAAATGTATCGATCCATAATAATATAACATGTAAAAATATGATAAAATTGG
111 GTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGG
**
12759085 TCTATAAATGACAAAA
176 TCTCGAAATGACAAAA
12759101 GGTGAACACA
Statistics
Matches: 506, Mismatches: 24, Indels: 30
0.90 0.04 0.05
Matches are distributed among these distances:
342 60 0.12
344 87 0.17
345 188 0.37
352 1 0.00
355 1 0.00
356 1 0.00
363 1 0.00
364 34 0.07
365 133 0.26
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (344 bp):
ATGACAAAACAGATAAAGCGCTACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
TATCGATCCATAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGG
TAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATT
TAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATAGATCCATAA
CAATATAACAGGTAAAAAT
Found at i:12758988 original size:182 final size:182
Alignment explanation
Indices: 12758545--12759100 Score: 988
Period size: 182 Copynumber: 3.0 Consensus size: 182
12758535 ATGTAATAAT
* * * *
12758545 ATGACAAAACAGATAAAGCGCTACCGGTTATGTTAAAAGTGTCGCTAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
12758610 CACTTTTGGAATTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
66 CACTTTTGGAA-TTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAT
12758674 GTATCGATCCATAACAATATAACAGGTAAAAAATATGACAAAACCGGTCTCGAA
130 GTATCGATCCATAACAATATAACAGGT-AAAAATATGACAAAACCGGTCTCGAA
12758728 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
12758793 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
12758858 TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
131 TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
12758910 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
1 ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
12758975 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
66 CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
* * * ** **
12759040 TATCGATCCATAATAATATAACATGTAAAAATATGATAAAATTGGTCTATAA
131 TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
12759092 ATGACAAAA
1 ATGACAAAA
12759101 GGTGAACACA
Statistics
Matches: 361, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
182 214 0.59
183 147 0.41
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
ATGACAAAACAGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGA
CACTTTTGGAATTAATAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATG
TATCGATCCATAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAA
Found at i:12760662 original size:21 final size:21
Alignment explanation
Indices: 12760632--12760810 Score: 136
Period size: 21 Copynumber: 8.6 Consensus size: 21
12760622 GATTTACATA
*
12760632 TTCGCATTGCGATAGTCCAAG
1 TTCGCGTTGCGATAGTCCAAG
*
12760653 TTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
** * *
12760674 TTCGCGTTGCGATTTTTCAAA
1 TTCGCGTTGCGATAGTCCAAG
* * *
12760695 TT--CGTTGTGATGGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
12760714 TTCGCGTTGCGATTTATTCCAAA
1 TTCGCGTTGCGA--TAGTCCAAG
* *
12760737 TT--CGTTGAGATAATCCAAG
1 TTCGCGTTGCGATAGTCCAAG
* *
12760756 TTCACGTTGCGATTTATTCCAAG
1 TTCGCGTTGCGA--TAGTCCAAG
*
12760779 TT--CGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATAGTCCAAG
12760798 TTCGCGTTGCGAT
1 TTCGCGTTGCGAT
12760811 TTATTCCAAA
Statistics
Matches: 123, Mismatches: 25, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
19 31 0.25
21 75 0.61
23 17 0.14
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (21 bp):
TTCGCGTTGCGATAGTCCAAG
Found at i:12760684 original size:42 final size:40
Alignment explanation
Indices: 12760632--12760831 Score: 211
Period size: 42 Copynumber: 4.8 Consensus size: 40
12760622 GATTTACATA
* * *
12760632 TTCGCATTGCGATAGTCCAAGTTCGCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGATATTCCAAATT--CGTTGCGATAGTCGAAG
* * * *
12760674 TTCGCGTTGCGATTTTTCAAATTCGTTGTGATGGTCGAAG
1 TTCGCGTTGCGATATTCCAAATTCGTTGCGATAGTCGAAG
* * *
12760714 TTCGCGTTGCGATTTATTCCAAATTCGTTGAGATAATCCAAG
1 TTCGCGTTGCGA--TATTCCAAATTCGTTGCGATAGTCGAAG
* *
12760756 TTCACGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAG
1 TTCGCGTTGCGA--TATTCCAAATTCGTTGCGATAGTCGAAG
*
12760798 TTCGCGTTGCGATTTATTCCAAATTCGTTACGAT
1 TTCGCGTTGCGA--TATTCCAAATTCGTTGCGAT
12760832 GGTGCAAAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 27 0.20
42 108 0.80
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36
Consensus pattern (40 bp):
TTCGCGTTGCGATATTCCAAATTCGTTGCGATAGTCGAAG
Found at i:12760807 original size:84 final size:82
Alignment explanation
Indices: 12760657--12760826 Score: 259
Period size: 84 Copynumber: 2.0 Consensus size: 82
12760647 TCCAAGTTCG
* * * * * *
12760657 CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTTTCAAATTCGTTGTGATGGTCGAAGTTCGCGTT
1 CGTTGAGATAATCCAAGTTCACGTTGCGATTTTTCAAATTCGTTGCGATAGTCGAAGTTCGCGTT
12760722 GCGATTTATTCCAAATT
66 GCGATTTATTCCAAATT
*
12760739 CGTTGAGATAATCCAAGTTCACGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCG
1 CGTTGAGATAATCCAAGTTCACGTTGCGATTT-TT-CAAATTCGTTGCGATAGTCGAAGTTCGCG
12760804 TTGCGATTTATTCCAAATT
64 TTGCGATTTATTCCAAATT
12760823 CGTT
1 CGTT
12760827 ACGATGGTGC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 28 0.35
83 2 0.03
84 49 0.62
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (82 bp):
CGTTGAGATAATCCAAGTTCACGTTGCGATTTTTCAAATTCGTTGCGATAGTCGAAGTTCGCGTT
GCGATTTATTCCAAATT
Found at i:12760826 original size:21 final size:21
Alignment explanation
Indices: 12760718--12760831 Score: 101
Period size: 21 Copynumber: 5.4 Consensus size: 21
12760708 TCGAAGTTCG
*
12760718 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAGTT
* *
12760739 CGTTGAGA--TAATCCAAGTT
1 CGTTGCGATTTATTCCAAGTT
12760758 CACGTTGCGATTTATTCCAAGTT
1 --CGTTGCGATTTATTCCAAGTT
* *
12760781 CGTTGCGA--TAGTCGAAGTT
1 CGTTGCGATTTATTCCAAGTT
*
12760800 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAGTT
*
12760823 CGTTACGAT
1 CGTTGCGAT
12760832 GGTGCAAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
19 18 0.24
21 38 0.51
23 18 0.24
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAGTT
Found at i:12761593 original size:16 final size:16
Alignment explanation
Indices: 12761572--12761614 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
12761562 ACTATCGAAA
12761572 CGAATTTGGAATAAAT
1 CGAATTTGGAATAAAT
12761588 CGAATTTGGAATAAAT
1 CGAATTTGGAATAAAT
12761604 CGAATTTGGAA
1 CGAATTTGGAA
12761615 AATCGCAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (16 bp):
CGAATTTGGAATAAAT
Found at i:12761640 original size:21 final size:21
Alignment explanation
Indices: 12761616--12761710 Score: 95
Period size: 21 Copynumber: 4.6 Consensus size: 21
12761606 AATTTGGAAA
*
12761616 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTGGACT
* **
12761637 ATCGCAA--CGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACT
* * *
12761656 ATGGCAACTCGAACTTTGACT
1 ATCGCAACGCGAACTTGGACT
*
12761677 ATCGCAACGTGAACTTGGACT
1 ATCGCAACGCGAACTTGGACT
*
12761698 ATCGCAATGCGAA
1 ATCGCAACGCGAA
12761711 TATGTAAATC
Statistics
Matches: 57, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
19 14 0.25
21 43 0.75
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTGGACT
Found at i:12761663 original size:40 final size:40
Alignment explanation
Indices: 12761604--12761685 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
12761594 TGGAATAAAT
12761604 CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAA
1 CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAA
* * *
12761644 CGAATTTGGAAAATGGCAACTCGAACTTTGACTATCGCAA
1 CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAA
12761684 CG
1 CG
12761686 TGAACTTGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (40 bp):
CGAATTTGGAAAATCGCAACGCGAACTTCGACTATCGCAA
Found at i:12761768 original size:21 final size:21
Alignment explanation
Indices: 12761719--12761773 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
12761709 AATATGTAAA
* *
12761719 TCGTATTGCGATAGTCCAAGT
1 TCGTGTTGCGATAGTCAAAGT
**
12761740 TCACGTTGCGATAGTCAAAGT
1 TCGTGTTGCGATAGTCAAAGT
*
12761761 TCGTGTTGTGATA
1 TCGTGTTGCGATA
12761774 CCGGAGATTG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (21 bp):
TCGTGTTGCGATAGTCAAAGT
Found at i:12761924 original size:17 final size:17
Alignment explanation
Indices: 12761898--12761988 Score: 53
Period size: 17 Copynumber: 5.4 Consensus size: 17
12761888 TTATTTTCTC
* *
12761898 TAATACTAATAGTATAG
1 TAATAATAATAATATAG
*
12761915 TAATAATAATAATATAA
1 TAATAATAATAATATAG
* * *
12761932 TAGT-ATAACAATGATAC
1 TAATAATAATAAT-ATAG
* *
12761949 TAAT-ATAATATTAATAA
1 TAATAATAATAAT-ATAG
* *
12761966 TAGTACTAATAATA-AG
1 TAATAATAATAATATAG
12761982 TAATAAT
1 TAATAAT
12761989 GTTATTTAAA
Statistics
Matches: 55, Mismatches: 17, Indels: 5
0.71 0.22 0.06
Matches are distributed among these distances:
16 13 0.24
17 36 0.65
18 6 0.11
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (17 bp):
TAATAATAATAATATAG
Found at i:12761933 original size:25 final size:25
Alignment explanation
Indices: 12761898--12761958 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
12761888 TTATTTTCTC
**
12761898 TAATACTAATAGTATAGTAATAATAA
1 TAATA-TAATAGTATAACAATAATAA
* *
12761924 TAATATAATAGTATAACAATGATAC
1 TAATATAATAGTATAACAATAATAA
12761949 TAATATAATA
1 TAATATAATA
12761959 TTAATAATAG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 26 0.84
26 5 0.16
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (25 bp):
TAATATAATAGTATAACAATAATAA
Found at i:12762003 original size:3 final size:3
Alignment explanation
Indices: 12761915--12761988 Score: 55
Period size: 3 Copynumber: 25.3 Consensus size: 3
12761905 AATAGTATAG
* * * * *
12761915 TAA TAA TAA TAA T-A TAA TAG T-A TAA CAA TGA TAC TAA T-A TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
12761960 TAA TAA TAG TAC TAA TAA TAA GTAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA T
12761989 GTTATTTAAA
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 5 0.09
3 46 0.85
4 3 0.06
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:12762021 original size:23 final size:23
Alignment explanation
Indices: 12761973--12762025 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
12761963 TAATAGTACT
**
12761973 AATAATAAGTAATAATGTTATTTA
1 AATAAT-AGTAATAATGTTAGGTA
12761997 AATAATAGTAATAA-GTTCAGGTA
1 AATAATAGTAATAATGTT-AGGTA
12762020 AA-AATA
1 AATAATA
12762026 TGGTAATTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 7 0.27
23 13 0.50
24 6 0.23
ACGTcount: A:0.53, C:0.02, G:0.11, T:0.34
Consensus pattern (23 bp):
AATAATAGTAATAATGTTAGGTA
Found at i:12769224 original size:57 final size:57
Alignment explanation
Indices: 12769114--12769224 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
12769104 GTCAAATCAT
* ** *
12769114 TCAAATGTTGAGTGCTACAACTGCGGCAAGCATGGGTACTATACAAAATAGTGCAAA
1 TCAAATGTCGAGTGCTACAACTGCGGCAAGCATGGACACTATACAAAAGAGTGCAAA
* * * *
12769171 TCAAATGTCGAGTGCTATAATTGCGGCAAGCATGGACACTATGCAAAGGAGTGC
1 TCAAATGTCGAGTGCTACAACTGCGGCAAGCATGGACACTATACAAAAGAGTGC
12769225 TATTCCGAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (57 bp):
TCAAATGTCGAGTGCTACAACTGCGGCAAGCATGGACACTATACAAAAGAGTGCAAA
Found at i:12773293 original size:18 final size:18
Alignment explanation
Indices: 12773272--12773327 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
12773262 TTAAAAACAT
12773272 TAACCACATCATCGCAAC
1 TAACCACATCATCGCAAC
* * *
12773290 TAACAACATTA-C-AAAC
1 TAACCACATCATCGCAAC
12773306 ATTAACCACATCATCGCAAC
1 --TAACCACATCATCGCAAC
12773326 TA
1 TA
12773328 GCAACATGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 3 0.11
17 1 0.04
18 20 0.71
19 1 0.04
20 3 0.11
ACGTcount: A:0.45, C:0.32, G:0.04, T:0.20
Consensus pattern (18 bp):
TAACCACATCATCGCAAC
Found at i:12773300 original size:36 final size:36
Alignment explanation
Indices: 12773259--12773334 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
12773249 ATTAGAAACG
12773259 ACATTAAAAACATTAACCACATCATCGCAACTAACA
1 ACATTAAAAACATTAACCACATCATCGCAACTAACA
* *
12773295 ACATTACAAACATTAACCACATCATCGCAACTAGCA
1 ACATTAAAAACATTAACCACATCATCGCAACTAACA
12773331 ACAT
1 ACAT
12773335 GCTTTTTAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.47, C:0.29, G:0.04, T:0.20
Consensus pattern (36 bp):
ACATTAAAAACATTAACCACATCATCGCAACTAACA
Found at i:12775623 original size:26 final size:26
Alignment explanation
Indices: 12775592--12775660 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
12775582 GTTAGTGATA
* *
12775592 AATTTATAAAATTTTAGAGGATAACG
1 AATTTATAAAATTTTAAAAGATAACG
12775618 AATTTATAAAATTTTAAAAGATAACG
1 AATTTATAAAATTTTAAAAGATAACG
*
12775644 AAGTTATAAAATTTTAA
1 AATTTATAAAATTTTAA
12775661 GGGGAACGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (26 bp):
AATTTATAAAATTTTAAAAGATAACG
Found at i:12777293 original size:2 final size:2
Alignment explanation
Indices: 12777286--12777322 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
12777276 CAAACATGTC
12777286 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12777323 ACACCATACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12777469 original size:37 final size:37
Alignment explanation
Indices: 12777390--12777500 Score: 123
Period size: 37 Copynumber: 3.0 Consensus size: 37
12777380 ATGCAGTTGT
* * * **
12777390 TGGAATTAACATCTCGATGAGATGAACCAATCAGTAGT
1 TGGAATTATCATCCCAAT-AGATGAACCAATCAGTAAA
* * * *
12777428 TGGAATTATCATCCTAATGGATGAACCAGTCATTAAA
1 TGGAATTATCATCCCAATAGATGAACCAATCAGTAAA
*
12777465 TGGAATTATCATCCCAATAGATGAACCAATTAGTAA
1 TGGAATTATCATCCCAATAGATGAACCAATCAGTAA
12777501 TTCGTTCATT
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
37 45 0.76
38 14 0.24
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (37 bp):
TGGAATTATCATCCCAATAGATGAACCAATCAGTAAA
Found at i:12788454 original size:6 final size:6
Alignment explanation
Indices: 12788443--12788470 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
12788433 ACGGCTCGGC
12788443 TCGTGG TCGTGG TCGTGG TCGTGG TCGT
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGT
12788471 CTTCGACACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.18, G:0.46, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:12789287 original size:13 final size:13
Alignment explanation
Indices: 12789269--12789295 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
12789259 GAAAAATTAC
12789269 ATATAAGAAGAAA
1 ATATAAGAAGAAA
12789282 ATATAAGAAGAAA
1 ATATAAGAAGAAA
12789295 A
1 A
12789296 GATGAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATATAAGAAGAAA
Found at i:12792151 original size:49 final size:50
Alignment explanation
Indices: 12792089--12792186 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 50
12792079 GTACCAGCTT
* *
12792089 ACCACCGTCACACA-GACGTCAGGTTACATGCGCAA-TATCATATAATAGC
1 ACCACCGTCACACATGACGTCAGGTAAAATGC-CAAGTATCATATAATAGC
12792138 ACCACCGTCACACATGTGACGTCAGGTAAAATGCCAAGTATCATATAAT
1 ACCACCGTCACACA--TGACGTCAGGTAAAATGCCAAGTATCATATAAT
12792187 GCTCTAACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
49 14 0.33
51 3 0.07
52 26 0.60
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (50 bp):
ACCACCGTCACACATGACGTCAGGTAAAATGCCAAGTATCATATAATAGC
Found at i:12797667 original size:27 final size:27
Alignment explanation
Indices: 12797622--12797673 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
12797612 TAAATGTGAT
*
12797622 GATCTCTGAATCATTTTCATATTCTAC
1 GATCTCTGAATCATCTTCATATTCTAC
* * *
12797649 GATCTCTGGATCCTCTTCATTTTCT
1 GATCTCTGAATCATCTTCATATTCT
12797674 TGAGACATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.19, C:0.25, G:0.10, T:0.46
Consensus pattern (27 bp):
GATCTCTGAATCATCTTCATATTCTAC
Found at i:12801137 original size:19 final size:20
Alignment explanation
Indices: 12801115--12801152 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12801105 ATTGAATTTA
12801115 TTCAAAAA-AATTCAAAGTT
1 TTCAAAAATAATTCAAAGTT
12801134 TTCAAAAATAATTCAAAGT
1 TTCAAAAATAATTCAAAGT
12801153 CCATTTAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (20 bp):
TTCAAAAATAATTCAAAGTT
Found at i:12806435 original size:15 final size:15
Alignment explanation
Indices: 12806415--12806444 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12806405 AAGGGTTAAT
12806415 TACTCCATTGCTCTC
1 TACTCCATTGCTCTC
*
12806430 TACTCCTTTGCTCTC
1 TACTCCATTGCTCTC
12806445 AAATTAGATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.40, G:0.07, T:0.43
Consensus pattern (15 bp):
TACTCCATTGCTCTC
Found at i:12816544 original size:15 final size:16
Alignment explanation
Indices: 12816507--12816546 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 16
12816497 ATAAAAAATT
12816507 TTAAATTTTTACAATAA
1 TTAAA-TTTTACAATAA
12816524 TT--ATTTTA-AATAA
1 TTAAATTTTACAATAA
12816537 TTAAATTTTA
1 TTAAATTTTA
12816547 TAAAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
13 7 0.33
14 5 0.24
15 7 0.33
17 2 0.10
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAAATTTTACAATAA
Found at i:12816562 original size:30 final size:29
Alignment explanation
Indices: 12816507--12816568 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
12816497 ATAAAAAATT
*
12816507 TTAAATTTTTACAATAATTATTTTAAATAA
1 TTAAATTTTTAAAATAATTATTTTAAA-AA
12816537 TTAAATTTTATAAAAT-A-TATATTTAAAAA
1 TTAAATTTT-TAAAATAATTAT-TTTAAAAA
12816566 TTA
1 TTA
12816569 CTTATTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 8 0.28
30 16 0.55
31 5 0.17
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATTTTTAAAATAATTATTTTAAAAA
Found at i:12817668 original size:55 final size:54
Alignment explanation
Indices: 12817598--12817793 Score: 302
Period size: 55 Copynumber: 3.6 Consensus size: 54
12817588 TGAATGAGTA
*
12817598 TGTATCGGTGCACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGCTATTTG
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTG-TATTTG
* *
12817653 TGTATCAGTACACTGAGGAGTGTATCGATGCCCTCAAAACATCGAGTGTTATTTG
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTG-TATTTG
* * *
12817708 TGTATCGGTACACTGAGGAGTGCATTGATACCCTCAAAACATCGAGTGTCATTAG
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGT-ATTTG
*
12817763 TGTATCGGTACACTGAGGAGTGTATCAATAC
1 TGTATCGGTACACTGAGGAGTGTATCGATAC
12817794 TCTTTCCATT
Statistics
Matches: 128, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
54 1 0.01
55 127 0.99
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (54 bp):
TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGTATTTG
Found at i:12818383 original size:21 final size:21
Alignment explanation
Indices: 12818357--12818471 Score: 67
Period size: 21 Copynumber: 5.3 Consensus size: 21
12818347 GTCGAGGGTC
* *
12818357 TATGTGGTCCTTCGGGACAAT
1 TATGTGGTCCTTCAGGACAAA
* *
12818378 TATGTGGTCTTTTAGGACAAA
1 TATGTGGTCCTTCAGGACAAA
*
12818399 TATGTGG-CACTTCAGTG-CAACCC
1 TATGTGGTC-CTTCAG-GACAA--A
*
12818422 TATGTGG-CACTTCAGTGTA-AAC
1 TATGTGGTC-CTTCAG-G-ACAAA
* *
12818444 TATATGGTCATTCAGGACAAA
1 TATGTGGTCCTTCAGGACAAA
12818465 TATGTGG
1 TATGTGG
12818472 CACTTCGGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
20 2 0.03
21 40 0.53
22 13 0.17
23 18 0.24
24 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (21 bp):
TATGTGGTCCTTCAGGACAAA
Found at i:12823357 original size:55 final size:55
Alignment explanation
Indices: 12823296--12823439 Score: 216
Period size: 55 Copynumber: 2.6 Consensus size: 55
12823286 TGAATGAGTT
* * * *
12823296 TGTATCGGTACACTGAGGAGTGTATCAATACCCTCAAAACATCGAGTTCTATTTG
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGCCATTAG
* * * *
12823351 TGTATCGATACACTAAGGAGTGTATCGATACGCACAAAACATCGAGTGCCATTAG
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGCCATTAG
12823406 TGTATCGGTACACTGAGGAGTGTATCGATACCCT
1 TGTATCGGTACACTGAGGAGTGTATCGATACCCT
12823440 TGCAATTTCG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 77 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (55 bp):
TGTATCGGTACACTGAGGAGTGTATCGATACCCTCAAAACATCGAGTGCCATTAG
Found at i:12826743 original size:17 final size:18
Alignment explanation
Indices: 12826709--12826743 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12826699 TGTATAGATT
*
12826709 ATCGTCAGCTTAACAAGG
1 ATCGTCAACTTAACAAGG
12826727 ATCGTCAACTT-ACAAGG
1 ATCGTCAACTTAACAAGG
12826744 TGGCCATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (18 bp):
ATCGTCAACTTAACAAGG
Found at i:12830171 original size:35 final size:35
Alignment explanation
Indices: 12830120--12830200 Score: 135
Period size: 35 Copynumber: 2.3 Consensus size: 35
12830110 GACTGAGGAG
*
12830120 TGTATCGATACGCTCAAAACATCGAGTGTTATTTA
1 TGTATCGGTACGCTCAAAACATCGAGTGTTATTTA
* *
12830155 TGTATCGGTACTCTCAAAACATCGAGTGTTATTTG
1 TGTATCGGTACGCTCAAAACATCGAGTGTTATTTA
12830190 TGTATCGGTAC
1 TGTATCGGTAC
12830201 ACTGAGGAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (35 bp):
TGTATCGGTACGCTCAAAACATCGAGTGTTATTTA
Found at i:12830214 original size:55 final size:55
Alignment explanation
Indices: 12830155--12830278 Score: 203
Period size: 55 Copynumber: 2.3 Consensus size: 55
12830145 GTGTTATTTA
* * ** *
12830155 TGTATCGGTACTCTCAAAACATCGAGTGTTATTTGTGTATCGGTACACTGAGGAG
1 TGTATCGATACCCTCAAAACATCGAGTGCCATTAGTGTATCGGTACACTGAGGAG
12830210 TGTATCGATACCCTCAAAACATCGAGTGCCATTAGTGTATCGGTACACTGAGGAG
1 TGTATCGATACCCTCAAAACATCGAGTGCCATTAGTGTATCGGTACACTGAGGAG
12830265 TGTATCGATACCCT
1 TGTATCGATACCCT
12830279 TTGCATTTCG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 64 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (55 bp):
TGTATCGATACCCTCAAAACATCGAGTGCCATTAGTGTATCGGTACACTGAGGAG
Found at i:12830927 original size:22 final size:22
Alignment explanation
Indices: 12830873--12830942 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
12830863 TCATCCGGGA
** *
12830873 CAAA-TATGTGGCACTTTGGTA
1 CAAACTATGTGGCACTTCAGTG
*
12830894 CAACCCTATGTGGCACTTCAGTG
1 CAA-ACTATGTGGCACTTCAGTG
12830917 CAAACTATGTGGTC-CTTCAGTG
1 CAAACTATGTGG-CACTTCAGTG
12830939 CAAA
1 CAAA
12830943 TTACGAGCTG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 3 0.07
22 20 0.49
23 18 0.44
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (22 bp):
CAAACTATGTGGCACTTCAGTG
Found at i:12831702 original size:16 final size:16
Alignment explanation
Indices: 12831683--12831714 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
12831673 TCAGTGGGAC
*
12831683 CGAAAGTAACCCGAAT
1 CGAAAATAACCCGAAT
12831699 CGAAAATAACCCGAAT
1 CGAAAATAACCCGAAT
12831715 TTAGTTCGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.25, G:0.16, T:0.12
Consensus pattern (16 bp):
CGAAAATAACCCGAAT
Found at i:12831794 original size:3 final size:3
Alignment explanation
Indices: 12831786--12831815 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
12831776 AATGGATAAT
12831786 TTA TTA TTA TTA TTA TTA TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
12831816 TTTAGCATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:12834028 original size:14 final size:14
Alignment explanation
Indices: 12834011--12834040 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
12834001 TTTAAAATTT
12834011 ATATTCGAATTCGG
1 ATATTCGAATTCGG
12834025 ATATTCGAATTCGG
1 ATATTCGAATTCGG
12834039 AT
1 AT
12834041 TTCCAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (14 bp):
ATATTCGAATTCGG
Found at i:12838709 original size:13 final size:13
Alignment explanation
Indices: 12838691--12838724 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
12838681 TAAGATTTTC
*
12838691 TTTGAAAATCATT
1 TTTGAAAATCAAT
12838704 TTTG-AAATCAAT
1 TTTGAAAATCAAT
12838716 TTTGAAAAT
1 TTTGAAAAT
12838725 TACTCTCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (13 bp):
TTTGAAAATCAAT
Found at i:12840497 original size:21 final size:20
Alignment explanation
Indices: 12840462--12840500 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12840452 AAATCAAAAC
*
12840462 ATTTTTTATTTCAAAATTTA
1 ATTTTTTATTACAAAATTTA
12840482 ATTTTTTATTGACAAAATT
1 ATTTTTTATT-ACAAAATT
12840501 GTGTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTTTATTACAAAATTTA
Found at i:12847358 original size:3 final size:3
Alignment explanation
Indices: 12847350--12847433 Score: 95
Period size: 3 Copynumber: 29.3 Consensus size: 3
12847340 GTGATATGTA
* *
12847350 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AGT AA- ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
12847396 AAT AAT AAT -AT AAG AAT CAT AAT CAT -AT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12847434 TGACAGAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
2 6 0.09
3 62 0.91
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:12847426 original size:31 final size:30
Alignment explanation
Indices: 12847349--12847433 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 30
12847339 TGTGATATGT
12847349 AAATAATAATAATAATAATAATAATAATAATA
1 AAAT-ATAATAAT-ATAATAATAATAATAATA
* *
12847381 AAGTA-AATTA-ATAATAATAATAAT-ATA
1 AAATATAATAATATAATAATAATAATAATA
*
12847408 AGAATCATAATCATATAATAATAATA
1 A-AAT-ATAATAATATAATAATAATA
12847434 TGACAGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
27 4 0.09
28 16 0.36
29 1 0.02
30 8 0.18
31 13 0.29
32 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (30 bp):
AAATATAATAATATAATAATAATAATAATA
Found at i:12848694 original size:42 final size:41
Alignment explanation
Indices: 12848594--12848700 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 41
12848584 GCCCAAAGGT
* * * *
12848594 CTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGA
1 CTTACAGATGGCCCGAAGGACTTAGCATCATGCTCAAAAGA
* * *
12848635 CTTACAGATGACTCGAAGGATTTAAGCATCATGCTCAAAAGA
1 CTTACAGATGGCCCGAAGGACTT-AGCATCATGCTCAAAAGA
12848677 CTTACTA-ATGGCCCGAAGGACTTA
1 CTTAC-AGATGGCCCGAAGGACTTA
12848701 TAAATATTGG
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
41 20 0.37
42 33 0.61
43 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (41 bp):
CTTACAGATGGCCCGAAGGACTTAGCATCATGCTCAAAAGA
Found at i:12850479 original size:11 final size:11
Alignment explanation
Indices: 12850463--12850511 Score: 73
Period size: 11 Copynumber: 4.4 Consensus size: 11
12850453 CTATTATTTC
12850463 TTCTTCTTTTT
1 TTCTTCTTTTT
12850474 TTCTTCTTTTT
1 TTCTTCTTTTT
12850485 TTCTTTTCTTTTT
1 TTC--TTCTTTTT
12850498 TTCTT-TTTTT
1 TTCTTCTTTTT
12850508 TTCT
1 TTCT
12850512 AAGTGTGGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.25
11 16 0.44
13 11 0.31
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTCTTCTTTTT
Found at i:12850483 original size:8 final size:8
Alignment explanation
Indices: 12850460--12850511 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
12850450 TATCTATTAT
12850460 TTCTTCTTC
1 TTCTT-TTC
*
12850469 TTTTTTTC
1 TTCTTTTC
*
12850477 TTCTTTTT
1 TTCTTTTC
12850485 TTCTTTTC
1 TTCTTTTC
*
12850493 TTTTTTTC
1 TTCTTTTC
*
12850501 TT-TTTTT
1 TTCTTTTC
12850508 TTCT
1 TTCT
12850512 AAGTGTGGCA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
7 6 0.17
8 26 0.72
9 4 0.11
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTCTTTTC
Found at i:12850498 original size:24 final size:24
Alignment explanation
Indices: 12850459--12850511 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
12850449 TTATCTATTA
12850459 TTTCTTCTTCTTTTTTTCTTCTTTT
1 TTTCTTCTTCTTTTTTTCTT-TTTT
12850484 TTTCTT-TTCTTTTTTTCTTTTTT
1 TTTCTTCTTCTTTTTTTCTTTTTT
12850507 TTTCT
1 TTTCT
12850512 AAGTGTGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 9 0.32
24 13 0.46
25 6 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTCTTCTTCTTTTTTTCTTTTTT
Found at i:12857616 original size:3 final size:3
Alignment explanation
Indices: 12857608--12857685 Score: 101
Period size: 3 Copynumber: 27.3 Consensus size: 3
12857598 ATCTGTAAAA
* *
12857608 AAT AAT AAT AAT AAT AAT AAT AAT AA- AGT AA- ATT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
12857654 AAT AAT -AT AAT CAT AAT AAT -AT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
12857686 TTATGACGGA
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
2 6 0.09
3 59 0.91
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:12857644 original size:28 final size:26
Alignment explanation
Indices: 12857609--12857686 Score: 108
Period size: 25 Copynumber: 3.1 Consensus size: 26
12857599 TCTGTAAAAA
12857609 ATAATAATAATAATAATAATAATAA-
1 ATAATAATAATAATAATAATAATAAT
*
12857634 AGTAA-ATTAATAATAATAATAATAAT
1 A-TAATAATAATAATAATAATAATAAT
*
12857660 ATAATCATAATAAT-ATAATAATAAT
1 ATAATAATAATAATAATAATAATAAT
12857685 AT
1 AT
12857687 TATGACGGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 36 0.77
26 11 0.23
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (26 bp):
ATAATAATAATAATAATAATAATAAT
Found at i:12857678 original size:31 final size:29
Alignment explanation
Indices: 12857607--12857685 Score: 99
Period size: 28 Copynumber: 2.7 Consensus size: 29
12857597 TATCTGTAAA
12857607 AAATAATAATAATAATAATAATAATAAAGT
1 AAATAAT-ATAATAATAATAATAATAAAGT
*
12857637 AAATTA-ATAATAATAATAATAATATAA-T
1 AAATAATATAATAATAATAATAATA-AAGT
12857665 CATAATAATATAATAATAATA
1 -A-AATAATATAATAATAATA
12857686 TTATGACGGA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
28 19 0.44
29 3 0.07
30 9 0.21
31 12 0.28
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (29 bp):
AAATAATATAATAATAATAATAATAAAGT
Found at i:12857769 original size:12 final size:13
Alignment explanation
Indices: 12857744--12857780 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
12857734 ATGTTGTGCA
12857744 TAACAAACATATT
1 TAACAAACATATT
12857757 TAACAAA-ATATT
1 TAACAAACATATT
*
12857769 TAA-AACCATATT
1 TAACAAACATATT
12857781 AAAGTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 13 0.59
13 7 0.32
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (13 bp):
TAACAAACATATT
Found at i:12858911 original size:31 final size:31
Alignment explanation
Indices: 12858870--12858930 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
12858860 GTCTTAGATC
* *
12858870 AATAATGTTCTTGGGGCCTAGGAGCCTACCT
1 AATAAAGTTCTTGGGGCATAGGAGCCTACCT
* *
12858901 AATAAAGTTCTTGGGGTATTGGAGCCTACC
1 AATAAAGTTCTTGGGGCATAGGAGCCTACC
12858931 CAAGGTCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (31 bp):
AATAAAGTTCTTGGGGCATAGGAGCCTACCT
Found at i:12868166 original size:44 final size:45
Alignment explanation
Indices: 12868079--12868183 Score: 108
Period size: 44 Copynumber: 2.3 Consensus size: 45
12868069 TAAAATATCG
12868079 ATGTTGATCTACCTTCTCATTATTTGATAGAATCAAACAAAAT-GAA
1 ATGTTGATCTACCTTCTCA-TA-TTGATAGAATCAAACAAAATGGAA
** *
12868125 CATGTTGATCTACCTTCTTC-TA-TGATAGAATTGAGCAAAATGGAA
1 -ATGTTGATCTACCTTC-TCATATTGATAGAATCAAACAAAATGGAA
* *
12868170 ATGTCGATCCACCT
1 ATGTTGATCTACCT
12868184 CATTCTGTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
44 28 0.55
45 3 0.06
46 2 0.04
47 16 0.31
48 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (45 bp):
ATGTTGATCTACCTTCTCATATTGATAGAATCAAACAAAATGGAA
Found at i:12870176 original size:11 final size:10
Alignment explanation
Indices: 12870160--12870205 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
12870150 TTCATTTTCC
12870160 TTTTTCTTATT
1 TTTTTCTT-TT
*
12870171 TTTTTC--TC
1 TTTTTCTTTT
12870179 TTTTTCTTATT
1 TTTTTCTT-TT
12870190 TTTTTCTTTT
1 TTTTTCTTTT
12870200 TTTTTC
1 TTTTTC
12870206 ATGTGTCGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
8 7 0.23
10 8 0.27
11 15 0.50
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:12870199 original size:6 final size:6
Alignment explanation
Indices: 12870122--12870204 Score: 64
Period size: 6 Copynumber: 13.7 Consensus size: 6
12870112 TTTTTGTATA
* * * *
12870122 TTTTTC ATTTTTC ATTTTC ATTTTC ATTTTC ATTTTCC TTTTTC TTATTT-
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC TT-TTTC
*
12870172 TTTTCTC TTTTTC TTATT- TTTTTC TTTTT- TTTT
1 TTTT-TC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
12870205 CATGTGTCGT
Statistics
Matches: 65, Mismatches: 6, Indels: 12
0.78 0.07 0.14
Matches are distributed among these distances:
5 10 0.15
6 38 0.58
7 17 0.26
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTC
Found at i:12870202 original size:19 final size:19
Alignment explanation
Indices: 12870154--12870201 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
12870144 TTCATTTTCA
12870154 TTTTC-CTTTTTCTTATTT
1 TTTTCTCTTTTTCTTATTT
12870172 TTTTCTCTTTTTCTTATTT
1 TTTTCTCTTTTTCTTATTT
12870191 TTTTCT-TTTTT
1 TTTTCTCTTTTT
12870202 TTTCATGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTCTCTTTTTCTTATTT
Found at i:12872368 original size:14 final size:15
Alignment explanation
Indices: 12872349--12872433 Score: 83
Period size: 14 Copynumber: 6.0 Consensus size: 15
12872339 TATTCCTTTT
12872349 TTATTTATAT-TATA
1 TTATTTATATATATA
*
12872363 TTATTTTTAT-TATA
1 TTATTTATATATATA
12872377 -TATCTTATATATATA
1 TTAT-TTATATATATA
*
12872392 -TATATATATATATA
1 TTATTTATATATATA
*
12872406 -TATATATATATATA
1 TTATTTATATATATA
*
12872420 -TATATATATATATA
1 TTATTTATATATATA
12872434 GATGCATTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
13 3 0.05
14 56 0.85
15 7 0.11
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATTTATATATATA
Found at i:12872369 original size:20 final size:19
Alignment explanation
Indices: 12872313--12872379 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 19
12872303 TATACATATT
12872313 TTTA-ATTATATTTTTTTTA
1 TTTATATTATA-TTTTTTTA
12872332 TTTACTA-TAT-TCCTTTTTTA
1 TTTA-TATTATAT--TTTTTTA
12872352 TTTATATTATATTATTTTTA
1 TTTATATTATATT-TTTTTA
12872372 TTATATAT
1 TT-TATAT
12872380 CTTATATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
18 1 0.03
19 7 0.17
20 25 0.62
21 7 0.17
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTATATTATATTTTTTTA
Found at i:12872387 original size:2 final size:2
Alignment explanation
Indices: 12872373--12872433 Score: 106
Period size: 2 Copynumber: 31.0 Consensus size: 2
12872363 TTATTTTTAT
*
12872373 TA TA TA TC T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12872414 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
12872434 GATGCATTAA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
1 1 0.02
2 56 0.98
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12872822 original size:27 final size:26
Alignment explanation
Indices: 12872791--12872860 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 26
12872781 TTATTCATTT
12872791 TGTTTATTTATTATT-ATTATTTTTACG
1 TGTTTATTTATTATTCATT-TTTTT-CG
*
12872818 TGTTT-TGTTATT-TTCCATTTTTTTCT
1 TGTTTAT-TTATTATT-CATTTTTTTCG
12872844 TGTTTTATTTATTATTC
1 TG-TTTATTTATTATTC
12872861 TCACATTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
26 6 0.17
27 24 0.67
28 6 0.17
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (26 bp):
TGTTTATTTATTATTCATTTTTTTCG
Found at i:12876152 original size:69 final size:69
Alignment explanation
Indices: 12876035--12876177 Score: 232
Period size: 69 Copynumber: 2.1 Consensus size: 69
12876025 ATTCAAACTA
* *
12876035 TGAGATTGATCAAGAACAATCATTTTTGAATCACTGAACCACTTCACTCGAAGATCATAGAGCAT
1 TGAGATTGATCAAGAACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCAT
12876100 CAAG
66 CAAG
* * *
12876104 TGAGATTGATCAAGCACAATCATTTCTGAATCACTGAATCACTCCACTCGAAGATCATGGAGCAT
1 TGAGATTGATCAAGAACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCAT
12876169 CAAG
66 CAAG
*
12876173 AGAGA
1 TGAGA
12876178 GACACATACG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (69 bp):
TGAGATTGATCAAGAACAATCATTTCTGAATCACTGAACCACTCCACTCGAAGATCATAGAGCAT
CAAG
Found at i:12878043 original size:106 final size:106
Alignment explanation
Indices: 12877918--12878286 Score: 461
Period size: 106 Copynumber: 3.5 Consensus size: 106
12877908 GTGCCACTAG
* * * * *
12877918 AGACAACGCAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAAATTCCCAGTTT
1 AGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAAATTCCCAATTT
* * * *
12877983 TAGAACCAATTTCAACTTCACAGCGAAGGATATTGGATTCT
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
* * * * *
12878024 AGACAACACAAGTTCAACTTCACAACGAAAGGACGTCTGGTTGTCAACAAACAACTTCCCAATTT
1 AGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAAATTCCCAATTT
* *
12878089 CAGAGCCAAATTCAACTTCACAGCAAAGGATATTGGACTCA
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
* * * * * * *
12878130 AGATAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAATAAACAAGTTCCCAATTT
1 AGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAAATTCCCAATTT
* * * *
12878195 CAGGGCCAATTTCAACTTCCCAGCGAAGGATATTAGACCCA
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
* *
12878236 AGACAACACAAGCTCAACTTCACGACGAAGGGGA-GGATGATTGTCAACAAA
1 AGACAACACAAGCTCAACTTCACAACGAA-GGGACGGCTGATTGTCAACAAA
12878287 GATGCCACTC
Statistics
Matches: 225, Mismatches: 37, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
106 222 0.99
107 3 0.01
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (106 bp):
AGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAAATTCCCAATTT
CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCA
Found at i:12879598 original size:14 final size:14
Alignment explanation
Indices: 12879579--12879618 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
12879569 TATTCCTTTT
12879579 TTATTTATATTATA
1 TTATTTATATTATA
*
12879593 TTATTTGTATTATA
1 TTATTTATATTATA
12879607 TATATCTTATAT
1 T-TAT-TTATAT
12879619 CATTATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 14 0.64
15 3 0.14
16 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (14 bp):
TTATTTATATTATA
Done.