Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 71 of 78
Found at i:14619487 original size:24 final size:24
Alignment explanation
Indices: 14619426--14619487 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
14619416 ATCTGATTTC
* * *
14619426 TATTATGATTTTTACTCTAAATTA
1 TATTTTGATTTATGCTCTAAATTA
*
14619450 TATTTTGATTTATGCTCTAAATTC
1 TATTTTGATTTATGCTCTAAATTA
*
14619474 TGTTTTGATTTATG
1 TATTTTGATTTATG
14619488 ATATCTCCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (24 bp):
TATTTTGATTTATGCTCTAAATTA
Found at i:14623288 original size:12 final size:12
Alignment explanation
Indices: 14623271--14623315 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
14623261 ATGTTTTATC
14623271 TGATTTCTGTTA
1 TGATTTCTGTTA
* *
14623283 TGATTTCTGCTC
1 TGATTTCTGTTA
14623295 TGAATTT-TGTTA
1 TG-ATTTCTGTTA
14623307 TGATTTCTG
1 TGATTTCTG
14623316 ATATCTCCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 4 0.15
12 19 0.70
13 4 0.15
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.56
Consensus pattern (12 bp):
TGATTTCTGTTA
Found at i:14623305 original size:24 final size:24
Alignment explanation
Indices: 14623269--14623315 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14623259 AAATGTTTTA
14623269 TCTGATTTCTGTTATGATTTCTGC
1 TCTGATTTCTGTTATGATTTCTGC
14623293 TCTGAATTT-TGTTATGATTTCTG
1 TCTG-ATTTCTGTTATGATTTCTG
14623316 ATATCTCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.15, C:0.13, G:0.17, T:0.55
Consensus pattern (24 bp):
TCTGATTTCTGTTATGATTTCTGC
Found at i:14627459 original size:43 final size:43
Alignment explanation
Indices: 14627399--14627504 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 43
14627389 TGTATACAAA
**
14627399 AAAAACGCCGCTATATATCTCAAGTTTTTGCGGCGTTTGTTCC
1 AAAAACGCCGCTATATATCTCAACCTTTTGCGGCGTTTGTTCC
* * * * *
14627442 GAAAATGCCTCTATATATCTCGACCTTTTGCGGTGTTTGTTCC
1 AAAAACGCCGCTATATATCTCAACCTTTTGCGGCGTTTGTTCC
*
14627485 AAAAACGCCGCTATAGATCT
1 AAAAACGCCGCTATATATCT
14627505 TTACCTATTG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (43 bp):
AAAAACGCCGCTATATATCTCAACCTTTTGCGGCGTTTGTTCC
Found at i:14631846 original size:7 final size:7
Alignment explanation
Indices: 14631834--14631872 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
14631824 GATTTTTTAA
14631834 TGAATAG
1 TGAATAG
14631841 TGAATAG
1 TGAATAG
14631848 TGAATAG
1 TGAATAG
14631855 TGAATAG
1 TGAATAG
14631862 TGAATAG
1 TGAATAG
14631869 TGAA
1 TGAA
14631873 CAGTAACCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
TGAATAG
Found at i:14632723 original size:24 final size:24
Alignment explanation
Indices: 14632695--14632740 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
14632685 TCTACCAGAT
14632695 GATGTATAAAACATCTACGTACAC
1 GATGTATAAAACATCTACGTACAC
* *
14632719 GATGTATAATACATCTATGTAC
1 GATGTATAAAACATCTACGTAC
14632741 CATATCATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (24 bp):
GATGTATAAAACATCTACGTACAC
Found at i:14634494 original size:27 final size:27
Alignment explanation
Indices: 14634456--14634517 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
14634446 GTAGTTTCTA
* ** *
14634456 ATTTTCCAAAAATTGAAAATAAAAACT
1 ATTTTCTAAAAATAAAAAATAAAAAAT
14634483 ATTTTCTAAAAATAAAAAATAAAAAAT
1 ATTTTCTAAAAATAAAAAATAAAAAAT
14634510 ATTTTCTA
1 ATTTTCTA
14634518 GAACCAAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (27 bp):
ATTTTCTAAAAATAAAAAATAAAAAAT
Found at i:14639354 original size:59 final size:59
Alignment explanation
Indices: 14639279--14639406 Score: 170
Period size: 59 Copynumber: 2.2 Consensus size: 59
14639269 TGGTCCCTCG
* * * **
14639279 AGTGAGGCGTCGCTGATTCATAGTATTGTGAATCGAA-CAAAGGAA-ACGTTGATCCCACA
1 AGTGAGGCGTCCCTGATTCAAAGTATTATGAATC-AAGCAAAGGAACA-GTAAATCCCACA
*
14639338 AGTGAGGCGTCCCTGATTCAAAGTATTATGAATCAAGCAAAGGAACAGTAAATCCCTCA
1 AGTGAGGCGTCCCTGATTCAAAGTATTATGAATCAAGCAAAGGAACAGTAAATCCCACA
14639397 AGTGAGGCGT
1 AGTGAGGCGT
14639407 AGTTTGTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
58 2 0.03
59 58 0.95
60 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (59 bp):
AGTGAGGCGTCCCTGATTCAAAGTATTATGAATCAAGCAAAGGAACAGTAAATCCCACA
Found at i:14639491 original size:39 final size:39
Alignment explanation
Indices: 14639422--14639698 Score: 391
Period size: 39 Copynumber: 7.2 Consensus size: 39
14639412 GTTTTAAGAA
* * *
14639422 AAACAATCTTAAGTGAGAT-AAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
14639460 AAACTATCTCAAGCAAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
14639499 AAACTATCTTAAGCGAGATAAAATCGTATGTTTCGAGT-
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
14639537 AAATCTATCTCAAGCGAGAT-AAATCTTGTGTTTCGAGTG
1 AAA-CTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
14639576 AAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
14639615 AAACTATCTCAAGCGAGAT-AAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * * *
14639653 AAACTATTTCAAGCAATATAAAATCTTCAGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
14639692 AAACTAT
1 AAACTAT
14639699 GTAAAATCCT
Statistics
Matches: 215, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 83 0.39
39 132 0.61
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (39 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
Found at i:14639562 original size:77 final size:77
Alignment explanation
Indices: 14639422--14639698 Score: 400
Period size: 77 Copynumber: 3.6 Consensus size: 77
14639412 GTTTTAAGAA
* * * *
14639422 AAACAATCTTAAGTGAGAT-AAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGATAAAATCT
1 AAACTATCTTAAGCGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGAT-AAATCT
14639486 TCTGTTTCGAGTG
65 TCTGTTTCGAGTG
*
14639499 AAACTATCTTAAGCGAGATAAAATCGTATGTTTCGAGT-AAATCTATCTCAAGCGAGATAAATCT
1 AAACTATCTTAAGCGAGATAAAATCTTATGTTTCGAGTGAAA-CTATCTCAAGCGAGATAAATCT
*
14639563 TGTGTTTCGAGTG
65 TCTGTTTCGAGTG
* *
14639576 AAACTATCTCAAGCGACATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCTT
1 AAACTATCTTAAGCGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCTT
14639641 CTGTTTCGAGTG
66 CTGTTTCGAGTG
* *
14639653 AAACTAT-TTCAAGCAATATAAAATCTTCA-GTTTCGAGTGAAACTAT
1 AAACTATCTT-AAGCGAGATAAAATCTT-ATGTTTCGAGTGAAACTAT
14639699 GTAAAATCCT
Statistics
Matches: 182, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
76 1 0.01
77 146 0.80
78 35 0.19
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (77 bp):
AAACTATCTTAAGCGAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCTT
CTGTTTCGAGTG
Found at i:14639615 original size:116 final size:115
Alignment explanation
Indices: 14639422--14639698 Score: 394
Period size: 116 Copynumber: 2.4 Consensus size: 115
14639412 GTTTTAAGAA
* * * *
14639422 AAACAATCTTAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGATAAAATCTT
1 AAACTATCTCAAGCGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAACATAAAATCTT
* *
14639487 CTGTTTCGAGTGAAACTATCTTAAGCGAGATAAAATCGTATGTTTCGAGT-
66 ATGTTTCGAGTGAAACTATCTCAAGCGAGAT-AAATCGTATGTTTCGAGTG
* *
14639537 AAATCTATCTCAAGCGAGATAAATCTTGTGTTTCGAGTGAAACTATCTCAAGCGACATAAAATCT
1 AAA-CTATCTCAAGCGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAACATAAAATCT
* *
14639602 TATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCTTCTGTTTCGAGTG
65 TATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCGTATGTTTCGAGTG
* * * *
14639653 AAACTATTTCAAGCAATATAAAATCTTCAGTTTCGAGTGAAACTAT
1 AAACTATCTCAAGCGAGAT-AAATCTTCTGTTTCGAGTGAAACTAT
14639699 GTAAAATCCT
Statistics
Matches: 144, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
115 32 0.22
116 112 0.78
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (115 bp):
AAACTATCTCAAGCGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAACATAAAATCTT
ATGTTTCGAGTGAAACTATCTCAAGCGAGATAAATCGTATGTTTCGAGTG
Found at i:14640501 original size:20 final size:20
Alignment explanation
Indices: 14640476--14640523 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
14640466 AAGTATGGGT
14640476 GTGTATCGGTACACTGAGGA
1 GTGTATCGGTACACTGAGGA
* *
14640496 GTGTATCAGTACATTGAGGA
1 GTGTATCGGTACACTGAGGA
14640516 GTGTATCG
1 GTGTATCG
14640524 ATACCCTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.29
Consensus pattern (20 bp):
GTGTATCGGTACACTGAGGA
Found at i:14641492 original size:18 final size:18
Alignment explanation
Indices: 14641453--14641520 Score: 91
Period size: 18 Copynumber: 3.7 Consensus size: 18
14641443 GTTCTACATA
* *
14641453 GTCCTTCGGAATATATGTG
1 GTCCTTCGGGACATA-GTG
14641472 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
14641490 GTCCTTCGGGACATAGTG
1 GTCCTTCGGGACATAGTG
* *
14641508 CTCATTCGGGACA
1 GTCCTTCGGGACA
14641521 AATTTCTACG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
18 32 0.71
19 13 0.29
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (18 bp):
GTCCTTCGGGACATAGTG
Found at i:14645597 original size:28 final size:28
Alignment explanation
Indices: 14645556--14645636 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 28
14645546 AGAGTCAAGG
*
14645556 GTTCTATGTGGTCCTTCGGGACATAAGT
1 GTTCTATGTAGTCCTTCGGGACATAAGT
* * **
14645584 GTTCTACGTAGTCCTTCGAGACATATTT
1 GTTCTATGTAGTCCTTCGGGACATAAGT
14645612 GTTCTATGTAGTCCTTCGGGACATA
1 GTTCTATGTAGTCCTTCGGGACATA
14645637 GTGGTCATTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (28 bp):
GTTCTATGTAGTCCTTCGGGACATAAGT
Found at i:14646602 original size:78 final size:76
Alignment explanation
Indices: 14646466--14646714 Score: 284
Period size: 78 Copynumber: 3.2 Consensus size: 76
14646456 GGGGTGTTAC
* * *
14646466 AAACTATCTAAAGCGAGATAAAATTTTCAATTTT-GAGTGAAACTATCTCAAGCAAGATAAAATA
1 AAACTATCTCAAGCGAGATAAAATATT--ATTTTCGAGTGAAACTATCTCAAGCGAGAT-AAATA
*
14646530 TTTTGTTTTGAGCG
63 TTATGTTTTGAGCG
** * * *
14646544 AAGTTATCTCAAGCAAGATAAAATATTATGTTTCGAGTGAAACTATCTCAAACGAGATAAATCTT
1 AAACTATCTCAAGCGAGATAAAATATTAT-TTTCGAGTGAAACTATCTCAAGCGAGATAAATATT
* *
14646609 CTGTTTTGAGTG
65 ATGTTTTGAGCG
* * * *
14646621 AAACTATCTCTAGTGAGATAAATATTTTTTTGTTCGAGTGAAACTATCTCAAGCGAGATAAATAT
1 AAACTATCTCAAGCGAGATAAA-ATATTATT-TTCGAGTGAAACTATCTCAAGCGAGATAAATAT
*
14646686 TATGTTTCGAGCG
64 TATGTTTTGAGCG
*
14646699 AAACTATCTCGAGCGA
1 AAACTATCTCAAGCGA
14646715 TATGTTGATC
Statistics
Matches: 143, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
76 2 0.01
77 37 0.26
78 104 0.73
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (76 bp):
AAACTATCTCAAGCGAGATAAAATATTATTTTCGAGTGAAACTATCTCAAGCGAGATAAATATTA
TGTTTTGAGCG
Found at i:14646688 original size:116 final size:118
Alignment explanation
Indices: 14646466--14646708 Score: 325
Period size: 116 Copynumber: 2.1 Consensus size: 118
14646456 GGGGTGTTAC
*
14646466 AAACTATCT-AAAGCGAGATAAAATTTTCAATTTTGAGTGAAACTATCTCAAGCAAGATAAAATA
1 AAACTATCTCAAAGCGAGATAAAATCTTCAATTTTGAGTGAAACTATCTCAAGCAAGATAAAATA
** *
14646530 TTTTGTTTTGAGCGAAGTTATCTCAAGCAAGATAAAATATTATGTTTCGAGTG
66 TTTTGTTTTGAGCGAAACTATCTCAAGCAAGATAAAATATTATGTTTCGAGCG
** * **
14646583 AAACTATCTCAAA-CGAGAT-AAATCTTCTGTTTTGAGTGAAACTATCTCTAGTGAGAT-AAATA
1 AAACTATCTCAAAGCGAGATAAAATCTTCAATTTTGAGTGAAACTATCTCAAGCAAGATAAAATA
* * *
14646645 TTTTTTTGTTCGAGTGAAACTATCTCAAGCGAGAT-AAATATTATGTTTCGAGCG
66 TTTTGTT-TT-GAGCGAAACTATCTCAAGCAAGATAAAATATTATGTTTCGAGCG
14646699 AAACTATCTC
1 AAACTATCTC
14646709 GAGCGATATG
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
115 11 0.10
116 62 0.56
117 35 0.32
118 3 0.03
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (118 bp):
AAACTATCTCAAAGCGAGATAAAATCTTCAATTTTGAGTGAAACTATCTCAAGCAAGATAAAATA
TTTTGTTTTGAGCGAAACTATCTCAAGCAAGATAAAATATTATGTTTCGAGCG
Found at i:14646714 original size:38 final size:38
Alignment explanation
Indices: 14646466--14646714 Score: 250
Period size: 39 Copynumber: 6.4 Consensus size: 38
14646456 GGGGTGTTAC
* *
14646466 AAACTATCTAAAGCGAGATAAAATTTTCAAT-TTT-GAGTG
1 AAACTATCTCAAGCGAGAT-AAATATT--ATGTTTCGAGTG
* * * *
14646505 AAACTATCTCAAGCAAGATAAAATATTTTGTTTTGAGCG
1 AAACTATCTCAAGCGAGAT-AAATATTATGTTTCGAGTG
** *
14646544 AAGTTATCTCAAGCAAGATAAAATATTATGTTTCGAGTG
1 AAACTATCTCAAGCGAGAT-AAATATTATGTTTCGAGTG
* * * *
14646583 AAACTATCTCAAACGAGATAAATCTTCTGTTTTGAGTG
1 AAACTATCTCAAGCGAGATAAATATTATGTTTCGAGTG
* * * *
14646621 AAACTATCTCTAGTGAGATAAATATTTTTTTGTTCGAGTG
1 AAACTATCTCAAGCGAGATAAATA-TTATGT-TTCGAGTG
*
14646661 AAACTATCTCAAGCGAGATAAATATTATGTTTCGAGCG
1 AAACTATCTCAAGCGAGATAAATATTATGTTTCGAGTG
*
14646699 AAACTATCTCGAGCGA
1 AAACTATCTCAAGCGA
14646715 TATGTTGATC
Statistics
Matches: 176, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 61 0.35
39 85 0.48
40 29 0.16
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (38 bp):
AAACTATCTCAAGCGAGATAAATATTATGTTTCGAGTG
Found at i:14647124 original size:111 final size:110
Alignment explanation
Indices: 14646985--14647325 Score: 459
Period size: 111 Copynumber: 3.1 Consensus size: 110
14646975 CCCCCCCCGG
* ** *
14646985 TAAAAATTAGG-TTAGCTTCTTTAAAAAAATTATTTCAAGATAATCATCAAGAAACCCCTGAAAA
1 TAAAAATTAGGCTTAGCTTCTTTTAAAAAATTATTGGAA-ATCATCATCAAGAAACCCCTGAAAA
* *
14647049 TTAGGCTTAGTTTCTAAAAACTCATTTAAAAACATCAAGAAATCCC
65 TTAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCAAGAAACCCC
* * * * *
14647095 TAAAAATTAGGCTTAGCATCTTTTAAAAAAATCATCGGAACTCATCATCAAGAAACCACTGAAAA
1 TAAAAATTAGGCTTAGCTTCTTTT-AAAAAATTATTGGAAATCATCATCAAGAAACCCCTGAAAA
* * * * *
14647160 TCAGGCGTAGTTTCTAAAAACTCATTTGAAAGCATAAATAAACCCC
65 TTAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCAAGAAACCCC
* * * *
14647206 TAAAAATTAAGCTTAGCTTCTTTTAAAAATTTGTTGGAAATCATCATCAAGAAACCCCTGGAAAT
1 TAAAAATTAGGCTTAGCTTCTTTTAAAAAATTATTGGAAATCATCATCAAGAAACCCCTGAAAAT
*
14647271 TAGGCTTAGTTTCTAAAAGCTCATTTGAAAACATCAAGAAACCCC
66 TAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCAAGAAACCCC
*
14647316 TAAATATTAG
1 TAAAAATTAG
14647326 ATATGCATCT
Statistics
Matches: 196, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
110 92 0.47
111 93 0.47
112 11 0.06
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.29
Consensus pattern (110 bp):
TAAAAATTAGGCTTAGCTTCTTTTAAAAAATTATTGGAAATCATCATCAAGAAACCCCTGAAAAT
TAGGCTTAGTTTCTAAAAACTCATTTGAAAACATCAAGAAACCCC
Found at i:14649099 original size:35 final size:35
Alignment explanation
Indices: 14649060--14649128 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 35
14649050 TTGATCGATT
14649060 TTATTTCTTA-TTT-GATTGTTTTTTTTATTTTTTCC
1 TTATTTCTTACTTTCG-TT-TTTTTTTTATTTTTTCC
14649095 TTATTTCTTACTTTTCGTTTTTTTTTTATTTTTT
1 TTATTTCTTAC-TTTCGTTTTTTTTTTATTTTTT
14649129 TTCTATATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
35 10 0.32
36 15 0.48
37 5 0.16
38 1 0.03
ACGTcount: A:0.10, C:0.09, G:0.04, T:0.77
Consensus pattern (35 bp):
TTATTTCTTACTTTCGTTTTTTTTTTATTTTTTCC
Found at i:14649383 original size:2 final size:2
Alignment explanation
Indices: 14649376--14649403 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14649366 GGGGAAAATA
14649376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14649404 TTGAAAGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14649562 original size:18 final size:18
Alignment explanation
Indices: 14649539--14649578 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
14649529 CATGATAGAA
14649539 TTATTTCAATATTTCCCT
1 TTATTTCAATATTTCCCT
*
14649557 TTATTTCAATGTTTCCCT
1 TTATTTCAATATTTCCCT
14649575 TTAT
1 TTAT
14649579 GTCTACTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (18 bp):
TTATTTCAATATTTCCCT
Found at i:14650882 original size:24 final size:23
Alignment explanation
Indices: 14650853--14650938 Score: 118
Period size: 24 Copynumber: 3.6 Consensus size: 23
14650843 CAAATGAGCG
*
14650853 AACATAAACGAACTGATGTAAAC
1 AACATAAACGAACTAATGTAAAC
14650876 AAGCATAAACGAACTAATGTAAAC
1 AA-CATAAACGAACTAATGTAAAC
* *
14650900 GAACATAGACAAACTAATGTAAAC
1 -AACATAAACGAACTAATGTAAAC
14650924 AAACATAAACGAACT
1 -AACATAAACGAACT
14650939 GATATTGGGC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 2 0.04
24 51 0.93
25 2 0.04
ACGTcount: A:0.55, C:0.17, G:0.12, T:0.16
Consensus pattern (23 bp):
AACATAAACGAACTAATGTAAAC
Found at i:14650971 original size:14 final size:14
Alignment explanation
Indices: 14650950--14650998 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
14650940 ATATTGGGCT
14650950 AAACATAAATGAAC
1 AAACATAAATGAAC
* **
14650964 ACACATAAGCGAAC
1 AAACATAAATGAAC
*
14650978 AAACATAAATGAAT
1 AAACATAAATGAAC
14650992 AAACATA
1 AAACATA
14650999 TTACCGAACG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.61, C:0.16, G:0.08, T:0.14
Consensus pattern (14 bp):
AAACATAAATGAAC
Found at i:14651482 original size:43 final size:42
Alignment explanation
Indices: 14651429--14651609 Score: 149
Period size: 42 Copynumber: 4.3 Consensus size: 42
14651419 TCCTAATTTA
* * * *
14651429 TAGTGACATTTTTGTTAACAAACACTACTAATTCTCTTATCGT
1 TAGTGGCATTTTTGTTCACAAACAC-GCTAATTCTCTTATCTT
* *
14651472 TAGTGGCATTTTTGTCCACAAATACCGCTAATTCTC-T-TCTT
1 TAGTGGCATTTTTGTTCACAAACA-CGCTAATTCTCTTATCTT
* *
14651513 TAGTCGCA-TTTT-TTCACAAACGACGCTAATTCTCTTATATT
1 TAGTGGCATTTTTGTTCACAAAC-ACGCTAATTCTCTTATCTT
* * * * *
14651554 TAGTGGCGTTTTTG-CCACAAATGC-CGCTAATTATCCTGTCTT
1 TAGTGGCATTTTTGTTCACAAA--CACGCTAATTCTCTTATCTT
14651596 TAGTGGCATATTTT
1 TAGTGGCAT-TTTT
14651610 TCCATAAATG
Statistics
Matches: 111, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
39 18 0.16
40 6 0.05
41 19 0.17
42 33 0.30
43 33 0.30
44 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (42 bp):
TAGTGGCATTTTTGTTCACAAACACGCTAATTCTCTTATCTT
Found at i:14651556 original size:41 final size:41
Alignment explanation
Indices: 14651429--14651609 Score: 152
Period size: 43 Copynumber: 4.3 Consensus size: 41
14651419 TCCTAATTTA
* * * * *
14651429 TAGTGACATTTTTGTTAACAAACACTACTAATTCTCTTATCGT
1 TAGTGGCATTTTTG-TCACAAAGAC-GCTAATTCTCTTATCTT
*
14651472 TAGTGGCATTTTTGTCCACAAATACCGCTAATTCTC-T-TCTT
1 TAGTGGCATTTTTGT-CACAAAGA-CGCTAATTCTCTTATCTT
* *
14651513 TAGTCGCATTTTT-TCACAAACGACGCTAATTCTCTTATATT
1 TAGTGGCATTTTTGTCACAAA-GACGCTAATTCTCTTATCTT
* * * * * *
14651554 TAGTGGCGTTTTTGCCACAAATGCCGCTAATTATCCTGTCTT
1 TAGTGGCATTTTTGTCACAAA-GACGCTAATTCTCTTATCTT
14651596 TAGTGGCATATTTT
1 TAGTGGCAT-TTTT
14651610 TCCATAAATG
Statistics
Matches: 113, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
39 17 0.15
40 3 0.03
41 29 0.26
42 31 0.27
43 32 0.28
44 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (41 bp):
TAGTGGCATTTTTGTCACAAAGACGCTAATTCTCTTATCTT
Found at i:14651584 original size:42 final size:41
Alignment explanation
Indices: 14651456--14651644 Score: 184
Period size: 42 Copynumber: 4.5 Consensus size: 41
14651446 ACAAACACTA
* *
14651456 CTAATTCTCTTATCGTTAGTGGCATTTTTGTCCACAAATACCG
1 CTAATTCTCTT-TCTTTAGTGGCATTTTTG-CCACAAATGCCG
* * * *
14651499 CTAATTCTC-TTCTTTAGTCGCATTTTT-TCACAAACGACG
1 CTAATTCTCTTTCTTTAGTGGCATTTTTGCCACAAATGCCG
* *
14651538 CTAATTCTCTTATATTTAGTGGCGTTTTTGCCACAAATGCCG
1 CTAATTCTCTT-TCTTTAGTGGCATTTTTGCCACAAATGCCG
* * * *
14651580 CTAATTATCCTGTCTTTAGTGGCATATTTTTCCATAAATGCCG
1 CTAATTCT-CTTTCTTTAGTGGCAT-TTTTGCCACAAATGCCG
* * *
14651623 CTAATTATGTTTTTTTAGTGGC
1 CTAATTCTCTTTCTTTAGTGGC
14651645 GTTTGAAATA
Statistics
Matches: 120, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
39 17 0.14
40 1 0.01
41 29 0.24
42 39 0.32
43 34 0.28
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.42
Consensus pattern (41 bp):
CTAATTCTCTTTCTTTAGTGGCATTTTTGCCACAAATGCCG
Found at i:14654262 original size:121 final size:121
Alignment explanation
Indices: 14654131--14654445 Score: 296
Period size: 121 Copynumber: 2.6 Consensus size: 121
14654121 ATTGCGGTCT
* * * * *
14654131 TTTTTAAAAAAAGCTACAAAAGACAA-TTCAATAGAGGA-GTTTCTAGGAAAACGCCGCTAATGT
1 TTTTTAAAAAAAGCCACAAAAGACAAGTT-AATAG-CGATGTTTATAGGAAAACACCGCTAAAGT
* ** ** *
14654194 TACCATTTTCTAGAATTTGTATTTAAAATGC-CACTTATGCATTGATTTATTGCGACG
64 TACCATTTTATAGAATTTGTATTTAAAAACCTCACCAATGCACTGATTTATTGCGACG
* * * * *
14654251 TTTGTTTAAAAATGCCACTAAAGATAAGTTAATAGCGATGTTTATTGGAAAACACCGCTAAAGTT
1 TTT-TTAAAAAAAGCCACAAAAGACAAGTTAATAGCGATGTTTATAGGAAAACACCGCTAAAGTT
* * *
14654316 ACCATTTTATGGTATTTGTATTTAAAAACCTCACCAATGTACTGATTTATTGCGACG
65 ACCATTTTATAGAATTTGTATTTAAAAACCTCACCAATGCACTGATTTATTGCGACG
* * * * * * * ** *
14654373 TTTTTAAAAAAAGTCGCAAAAGACGAGGCT-ATAGCAATGTTTTTAGAAACAACGTCGCTAATGT
1 TTTTTAAAAAAAGCCACAAAAGAC-AAGTTAATAGCGATGTTTATAGGAA-AACACCGCTAAAGT
14654437 TACCATTTT
64 TACCATTTT
14654446 GTGGCATTTT
Statistics
Matches: 155, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
120 5 0.03
121 100 0.65
122 50 0.32
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Consensus pattern (121 bp):
TTTTTAAAAAAAGCCACAAAAGACAAGTTAATAGCGATGTTTATAGGAAAACACCGCTAAAGTTA
CCATTTTATAGAATTTGTATTTAAAAACCTCACCAATGCACTGATTTATTGCGACG
Found at i:14654444 original size:122 final size:121
Alignment explanation
Indices: 14654178--14654462 Score: 281
Period size: 122 Copynumber: 2.3 Consensus size: 121
14654168 AGTTTCTAGG
* * ** ** *
14654178 AAAACGCCGCTAATGTTACCATTTTCTAGAATTTGTATTTAAAATGCCACTTATGCATTGATTTA
1 AAAACG-CGCTAATGTTACCATTTTATGGAATTTGTATTTAAAAACCCACCAATGCACTGATTTA
* * * * * * *
14654243 TTGCGACGTTTGTTTAAAAATGCCACTAAAGATAAGTTAATAGCGATGTTTATTGGA
65 TTGCGACGTTTGTTAAAAAAAGCCACAAAAGAGAAGCTAATAGCAATGTTTATTAGA
* * *
14654300 AAACAC-CGCTAAAGTTACCATTTTATGGTATTTGTATTTAAAAACCTCACCAATGTACTGATTT
1 AAA-ACGCGCTAATGTTACCATTTTATGGAATTTGTATTTAAAAACC-CACCAATGCACTGATTT
* * *
14654364 ATTGCGACGTTT-TTAAAAAAAGTCGCAAAAGACGAGGCT-ATAGCAATGTTT-TTAGA
64 ATTGCGACGTTTGTTAAAAAAAGCCACAAAAGA-GAAGCTAATAGCAATGTTTATTAGA
* * *
14654420 AACAACGTCGCTAATGTTACCATTTTGTGGCATTTTTATTTAA
1 AA-AACG-CGCTAATGTTACCATTTTATGGAATTTGTATTTAA
14654463 GCACTGCTAT
Statistics
Matches: 133, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
120 8 0.06
121 61 0.46
122 62 0.47
123 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (121 bp):
AAAACGCGCTAATGTTACCATTTTATGGAATTTGTATTTAAAAACCCACCAATGCACTGATTTAT
TGCGACGTTTGTTAAAAAAAGCCACAAAAGAGAAGCTAATAGCAATGTTTATTAGA
Found at i:14656672 original size:11 final size:11
Alignment explanation
Indices: 14656656--14656680 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14656646 TACTTATCAT
14656656 TTTATTTACTA
1 TTTATTTACTA
14656667 TTTATTTACTA
1 TTTATTTACTA
14656678 TTT
1 TTT
14656681 TTCCCATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATTTACTA
Found at i:14663538 original size:18 final size:18
Alignment explanation
Indices: 14663515--14663558 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
14663505 AAATTTAAAA
*
14663515 TTTAATCTTTTCTT-TTAT
1 TTTAAT-TTTTATTCTTAT
14663533 TTTAATTTTTATTCTTAT
1 TTTAATTTTTATTCTTAT
14663551 TTT-ATTTT
1 TTTAATTTT
14663559 GTAAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTAATTTTTATTCTTAT
Found at i:14663892 original size:20 final size:21
Alignment explanation
Indices: 14663854--14663893 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14663844 TAACTTTTTC
14663854 TTTTCTCTTTCATTATTAACT
1 TTTTCTCTTTCATTATTAACT
*
14663875 TTTTTTCTTTCATT-TTAAC
1 TTTTCTCTTTCATTATTAAC
14663894 ATTTACTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTCTCTTTCATTATTAACT
Found at i:14669000 original size:13 final size:13
Alignment explanation
Indices: 14668982--14669084 Score: 109
Period size: 13 Copynumber: 7.9 Consensus size: 13
14668972 TTCAATACGC
14668982 GTCATAAATGTGA
1 GTCATAAATGTGA
*
14668995 GTCATAAATGTGC
1 GTCATAAATGTGA
14669008 GTCATAAATGTGA
1 GTCATAAATGTGA
* ** *
14669021 GACATAAATACGT
1 GTCATAAATGTGA
* *
14669034 GTCATAAAAG-CA
1 GTCATAAATGTGA
14669046 CGTCATAAATGTGA
1 -GTCATAAATGTGA
* *
14669060 GTCATAAATGCGT
1 GTCATAAATGTGA
14669073 GTCATAAATGTG
1 GTCATAAATGTG
14669085 CAACATAGAT
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
13 71 0.99
14 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (13 bp):
GTCATAAATGTGA
Found at i:14669038 original size:39 final size:39
Alignment explanation
Indices: 14668995--14669085 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
14668985 ATAAATGTGA
14668995 GTCATAAATGTGCGTCATAAATGTGAGACATAAATACGT
1 GTCATAAATGTGCGTCATAAATGTGAGACATAAATACGT
* ** * *
14669034 GTCATAAAAGCACGTCATAAATGTGAGTCATAAATGCGT
1 GTCATAAATGTGCGTCATAAATGTGAGACATAAATACGT
14669073 GTCATAAATGTGC
1 GTCATAAATGTGC
14669086 AACATAGATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (39 bp):
GTCATAAATGTGCGTCATAAATGTGAGACATAAATACGT
Found at i:14671926 original size:17 final size:17
Alignment explanation
Indices: 14671904--14671957 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
14671894 CAATTAAGGG
* *
14671904 CTAGTTAAATAAATAAA
1 CTAGTTTAATAAATGAA
*
14671921 CTAGTTTAATGAATGAA
1 CTAGTTTAATAAATGAA
*
14671938 CTAGTTTAATCAATGAA
1 CTAGTTTAATAAATGAA
14671955 CTA
1 CTA
14671958 TATGCATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.33
Consensus pattern (17 bp):
CTAGTTTAATAAATGAA
Found at i:14671943 original size:34 final size:34
Alignment explanation
Indices: 14671904--14671974 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
14671894 CAATTAAGGG
*
14671904 CTAGTTAAATAAATAAACTAGT-TTAATGAATGAA
1 CTAGTTAAATAAATAAACTA-TATGAATGAATGAA
* * * *
14671938 CTAGTTTAATCAATGAACTATATGCATGAATGAA
1 CTAGTTAAATAAATAAACTATATGAATGAATGAA
14671972 CTA
1 CTA
14671975 CTTCCCTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (34 bp):
CTAGTTAAATAAATAAACTATATGAATGAATGAA
Found at i:14677947 original size:17 final size:17
Alignment explanation
Indices: 14677925--14677992 Score: 100
Period size: 17 Copynumber: 4.0 Consensus size: 17
14677915 AATTAAGACT
*
14677925 TAGTTTGATAAATGAAC
1 TAGTTTAATAAATGAAC
14677942 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* *
14677959 TAGTTTGATTAATGAAC
1 TAGTTTAATAAATGAAC
*
14677976 TAGTTTAATCAATGAAC
1 TAGTTTAATAAATGAAC
14677993 GTGCTTACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 46 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:14677963 original size:34 final size:34
Alignment explanation
Indices: 14677925--14677992 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
14677915 AATTAAGACT
14677925 TAGTTTGATAAATGAACTAGTTTAATAAATGAAC
1 TAGTTTGATAAATGAACTAGTTTAATAAATGAAC
* *
14677959 TAGTTTGATTAATGAACTAGTTTAATCAATGAAC
1 TAGTTTGATAAATGAACTAGTTTAATAAATGAAC
14677993 GTGCTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (34 bp):
TAGTTTGATAAATGAACTAGTTTAATAAATGAAC
Found at i:14684039 original size:17 final size:18
Alignment explanation
Indices: 14684009--14684048 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
14683999 GAAAGAGAAA
*
14684009 AAAAATAAAGAAACAAAG
1 AAAAAGAAAGAAACAAAG
*
14684027 AAAAAGAAA-AAACAAAT
1 AAAAAGAAAGAAACAAAG
14684044 AAAAA
1 AAAAA
14684049 CAGGAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.82, C:0.05, G:0.07, T:0.05
Consensus pattern (18 bp):
AAAAAGAAAGAAACAAAG
Found at i:14687215 original size:59 final size:59
Alignment explanation
Indices: 14687116--14687245 Score: 163
Period size: 59 Copynumber: 2.2 Consensus size: 59
14687106 CAGCAGGCTG
* ** * *
14687116 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTTGG-CACGACCTTATGTGT
1 CATATTCGGGATTACACTAAAGGATACCTAGTACAGATGG-TGGACACGACATTATGTGT
** *
14687175 CATATTCGGGATTGTACTTAAGGATACCTAGTACAGATGGTGGACACGACATTATGTGT
1 CATATTCGGGATTACACTAAAGGATACCTAGTACAGATGGTGGACACGACATTATGTGT
*
14687234 CATACTCGGGAT
1 CATATTCGGGAT
14687246 AGCACTACGG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 3 0.05
59 58 0.95
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (59 bp):
CATATTCGGGATTACACTAAAGGATACCTAGTACAGATGGTGGACACGACATTATGTGT
Found at i:14688023 original size:16 final size:16
Alignment explanation
Indices: 14688002--14688034 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14687992 ATAATGAATC
*
14688002 ATATTTTTATGATATA
1 ATATTTTTATAATATA
14688018 ATATTTTTATAATATA
1 ATATTTTTATAATATA
14688034 A
1 A
14688035 GTTACCACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATTTTTATAATATA
Found at i:14693730 original size:19 final size:19
Alignment explanation
Indices: 14693706--14693745 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
14693696 AACAGATTCT
14693706 ATTTTTGCAGAATCTGCTG
1 ATTTTTGCAGAATCTGCTG
14693725 ATTTTTGCAGAATCTGCTG
1 ATTTTTGCAGAATCTGCTG
14693744 AT
1 AT
14693746 CAATTTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (19 bp):
ATTTTTGCAGAATCTGCTG
Found at i:14694765 original size:59 final size:59
Alignment explanation
Indices: 14694666--14694795 Score: 154
Period size: 59 Copynumber: 2.2 Consensus size: 59
14694656 CAGCAGGCTG
* * ** * *
14694666 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTTGG-CACGACCTTATGTGT
1 CATATTCGGGATTACACTAAAGGATACATAGTACAGATGG-TGGACACGACATTATGTGT
** *
14694725 CATATTCGGGATTGTACTTAAGGATACATAGTACAGATGGTGGACACGACATTATGTGT
1 CATATTCGGGATTACACTAAAGGATACATAGTACAGATGGTGGACACGACATTATGTGT
*
14694784 CATACTCGGGAT
1 CATATTCGGGAT
14694796 AGCACTACGG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
58 3 0.05
59 57 0.95
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (59 bp):
CATATTCGGGATTACACTAAAGGATACATAGTACAGATGGTGGACACGACATTATGTGT
Found at i:14694893 original size:20 final size:20
Alignment explanation
Indices: 14694856--14694898 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14694846 TATATTGGGC
* *
14694856 TATTGTCTATTGTTTATGGT
1 TATTGTCTATGGTATATGGT
* *
14694876 TATTTTCTATGGTATATGTT
1 TATTGTCTATGGTATATGGT
14694896 TAT
1 TAT
14694899 GGAATAATGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.16, T:0.60
Consensus pattern (20 bp):
TATTGTCTATGGTATATGGT
Found at i:14695585 original size:16 final size:16
Alignment explanation
Indices: 14695564--14695594 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14695554 ATAATGAATC
*
14695564 ATATTTTTATGATATG
1 ATATTTTTATAATATG
14695580 ATATTTTTATAATAT
1 ATATTTTTATAATAT
14695595 CAGTTACCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATATTTTTATAATATG
Found at i:14696381 original size:74 final size:74
Alignment explanation
Indices: 14696298--14696438 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 74
14696288 GTTTCTCTCG
** *
14696298 AAACAAATTTTGTCTCACTTGAGACAACTTTCCCT-AAATACAAA-CTTTGTCTCACTTGAGACA
1 AAACAAATTTCCTCTCACTTGAGAC-ACTGTCCCTCAAA-ACAAAGCTTTGTCTCACTTGAGACA
14696361 GTTTTTTCTAA
64 GTTTTTTCTAA
* * * * *
14696372 AAACAAATTTCCTCTCGCTTGAGACAGTGTCCCTCGAAACAAAGTTTTGTCTCTCTTGAGACAGT
1 AAACAAATTTCCTCTCACTTGAGACACTGTCCCTCAAAACAAAGCTTTGTCTCACTTGAGACAGT
14696437 TT
66 TT
14696439 CTCTTGAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
73 12 0.21
74 45 0.79
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (74 bp):
AAACAAATTTCCTCTCACTTGAGACACTGTCCCTCAAAACAAAGCTTTGTCTCACTTGAGACAGT
TTTTTCTAA
Found at i:14696464 original size:37 final size:37
Alignment explanation
Indices: 14696288--14696486 Score: 145
Period size: 37 Copynumber: 5.4 Consensus size: 37
14696278 CTTTGGGATT
* * *
14696288 GTTTCTCTCGAAAC-AAATTTTGTCTCACTTGAGACAA
1 GTTTCTCTTGAAACAAAATTTTATCTCTCTTGAGAC-A
* * * * * *
14696325 CTTTC-CCT-AAATACAAACTTTGTCTCACTTGAGACA
1 GTTTCTCTTGAAACA-AAATTTTATCTCTCTTGAGACA
* ** ** *
14696361 GTTTTTTCTAAAAAC-AAATTTCCTCTCGCTTGAGACA
1 G-TTTCTCTTGAAACAAAATTTTATCTCTCTTGAGACA
* * * * *
14696398 GTGTCCCTCGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCTCTTGAAACAAAATTTTATCTCTCTTGAGACA
* *
14696435 GTTTCTCTTGAAATAAAATTTTATTTCTCTTGAGACA
1 GTTTCTCTTGAAACAAAATTTTATCTCTCTTGAGACA
14696472 GTTTCTCTTGAAACA
1 GTTTCTCTTGAAACA
14696487 TTAAAAAAAT
Statistics
Matches: 125, Mismatches: 31, Indels: 12
0.74 0.18 0.07
Matches are distributed among these distances:
35 3 0.02
36 10 0.08
37 108 0.86
38 1 0.01
39 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (37 bp):
GTTTCTCTTGAAACAAAATTTTATCTCTCTTGAGACA
Found at i:14696537 original size:68 final size:66
Alignment explanation
Indices: 14696450--14696622 Score: 244
Period size: 66 Copynumber: 2.6 Consensus size: 66
14696440 TCTTGAAATA
14696450 AAATTTTATT-TCTCTTGAGACAGTTTCTCTTGAAACATTAAAA-AAATGAGATTGTTTCCCTCG
1 AAATTTT-TTCTCTCTTGAGACAGTTTCTCTTGAAACA--AAAATAAATGAGATTGTTTCCCTCG
14696513 AAAC
63 AAAC
***
14696517 AAAGTTTTTTCTCTCTTGAGACTA-TTTCTCTTGAAACAAAAATCTTTGAGATTGTTTCCCTCGA
1 AAA-TTTTTTCTCTCTTGAGAC-AGTTTCTCTTGAAACAAAAATAAATGAGATTGTTTCCCTCGA
14696581 AAC
64 AAC
*
14696584 AAATTTTTTCTCTCTTGAGACAGTTTCTCTTGTAACAAA
1 AAATTTTTTCTCTCTTGAGACAGTTTCTCTTGAAACAAA
14696623 TTTATCCCTA
Statistics
Matches: 97, Mismatches: 4, Indels: 11
0.87 0.04 0.10
Matches are distributed among these distances:
65 1 0.01
66 37 0.38
67 29 0.30
68 29 0.30
69 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.40
Consensus pattern (66 bp):
AAATTTTTTCTCTCTTGAGACAGTTTCTCTTGAAACAAAAATAAATGAGATTGTTTCCCTCGAAA
C
Found at i:14696882 original size:138 final size:137
Alignment explanation
Indices: 14696623--14697051 Score: 484
Period size: 138 Copynumber: 3.1 Consensus size: 137
14696613 TTGTAACAAA
* * * * *
14696623 TTTATCCCTAAAGATGTCTAATCGTCCTCATCACGTAGGAACCGTATCATCCACCGACCATATCT
1 TTTATCCCTAAAGATGGCCAATCGTCCTCATCACATAGGAACCGTGTCATCCACCGACCAAATCT
* * * * * * *
14696688 TCTCATTACGTAGGAGCCGTGTCATCCTTAGATACCCAGCCGA-CCTCATCACATAGGAATCATG
66 CCTCATCACGTAGGAGCAGTGTCACCCTTAGATAACCAACC-ATCCTCATCACATAGGAACCAT-
*
14696752 CTATCTGCC
129 ATATCTGCC
*
14696761 TTTATCCCTAAAGATGGCCAA-CTATCCTCATCACATAGGAACCGTGTCATCCACCGACCAAATC
1 TTTATCCCTAAAGATGGCCAATC-GTCCTCATCACATAGGAACCGTGTCATCCACCGACCAAATC
* ** * * *
14696825 TCCTCATCACGTAGGAGCAGCGTCACCCTTAGATAACCAATTATCCTTATCATATAGGAACCGTA
65 TCCTCATCACGTAGGAGCAGTGTCACCCTTAGATAACCAACCATCCTCATCACATAGGAACCATA
*
14696890 TAATGTGCC
130 T-ATCTGCC
* * * *** * *
14696899 TTTATCCCTAAATATAGACAATCGTCCTCATCACATAGGGGTCGTGTCATCTACCGACAAAATCT
1 TTTATCCCTAAAGATGGCCAATCGTCCTCATCACATAGGAACCGTGTCATCCACCGACCAAATCT
* * * *
14696964 CCTCATCACGTAGGAGTAGTGTAACCCTTAGATAACCAACCATCCTCATCACGTAGGAACCATTT
66 CCTCATCACGTAGGAGCAGTGTCACCCTTAGATAACCAACCATCCTCATCACATAGGAACCA-TA
*
14697029 TATCTTCC
130 TATCTGCC
*
14697037 TTTATCCCTATAGAT
1 TTTATCCCTAAAGAT
14697052 AGCTAGCCTT
Statistics
Matches: 242, Mismatches: 44, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
137 3 0.01
138 236 0.98
139 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (137 bp):
TTTATCCCTAAAGATGGCCAATCGTCCTCATCACATAGGAACCGTGTCATCCACCGACCAAATCT
CCTCATCACGTAGGAGCAGTGTCACCCTTAGATAACCAACCATCCTCATCACATAGGAACCATAT
ATCTGCC
Found at i:14697065 original size:23 final size:23
Alignment explanation
Indices: 14697035--14697105 Score: 133
Period size: 23 Copynumber: 3.1 Consensus size: 23
14697025 ATTTTATCTT
*
14697035 CCTTTATCCCTATAGATAGCTAG
1 CCTTTATCCCTAAAGATAGCTAG
14697058 CCTTTATCCCTAAAGATAGCTAG
1 CCTTTATCCCTAAAGATAGCTAG
14697081 CCTTTATCCCTAAAGATAGCTAG
1 CCTTTATCCCTAAAGATAGCTAG
14697104 CC
1 CC
14697106 ATCTTCATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (23 bp):
CCTTTATCCCTAAAGATAGCTAG
Found at i:14697414 original size:3 final size:3
Alignment explanation
Indices: 14697406--14697434 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14697396 AAGCTACGAT
14697406 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14697435 TACTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14704411 original size:15 final size:16
Alignment explanation
Indices: 14704352--14704407 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
14704342 CTACAAAAAC
14704352 ATTTTATTATATATTT
1 ATTTTATTATATATTT
14704368 A-TTTATTATA-A-TT
1 ATTTTATTATATATTT
* *
14704381 ATTATTAATATATTTTT
1 ATT-TTATTATATATTT
14704398 ATTTTATTAT
1 ATTTTATTAT
14704408 TTTTGTAGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
13 3 0.09
14 2 0.06
15 16 0.48
16 7 0.21
17 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
ATTTTATTATATATTT
Found at i:14704500 original size:33 final size:33
Alignment explanation
Indices: 14704458--14704530 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
14704448 TTCAAAAAAT
* *
14704458 AAACCAACGTATTTGAGTCTTATGGAAACACTA
1 AAACCAACGTATTTAAGTCCTATGGAAACACTA
*
14704491 AAACCAACGTATTTAAGTCCTATTGAAACACTA
1 AAACCAACGTATTTAAGTCCTATGGAAACACTA
14704524 AAACCAA
1 AAACCAA
14704531 AGCATTTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.25
Consensus pattern (33 bp):
AAACCAACGTATTTAAGTCCTATGGAAACACTA
Found at i:14708852 original size:110 final size:110
Alignment explanation
Indices: 14708659--14709314 Score: 977
Period size: 110 Copynumber: 6.0 Consensus size: 110
14708649 AATGGTGGTT
* *
14708659 GCTCAACTTCACAGCGAAGGGGCGACTGAC-GATCAACAAACAACTTTTTAATTTCATTCAGAGT
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTG-TCAACAAACAACTTTTCAGTTTCATTCAGAGT
14708723 CAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
65 CAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* *
14708769 GCTCAACTTCACAACGAAGGGGCGACTAACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
*
14708834 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAT
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
*
14708879 GCTCAACTTTACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* *
14708944 AATTTCAATTTCA-TA-GAATAGGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACG-A-AGGATATTGGACTCGAGACAACACAA
*
14708989 GCTCAACTTTACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
* * * *
14709054 AATTTCAACTTCACAGCGAAGGATAATAGACTTGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* * * *
14709099 GCTCAACTTCACAGTGAAGGGGCGACTGATTGTCAACAAACAACTTTTTAGTTTCATTCAGAGTG
1 GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
*
14709164 AATTTCAACTTCACAGCGAAGGATATTGGACTCGAGACAACACAA
66 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
* * *
14709209 GATCAACTTCACAGCGAATGGGC-AGCTGGCTGTCAACAAACAACTTTTCAG--T--TTCAGAGT
1 GCTCAACTTCACAGCGAAGGGGCGA-CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGT
*** * * *
14709269 CAATTTCAACTTCACGGTGAAGGCTATTGGTCTCGAAACAACACAA
65 CAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
14709315 AGTTTTGCTC
Statistics
Matches: 503, Mismatches: 37, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
106 48 0.10
108 2 0.00
109 3 0.01
110 447 0.89
111 2 0.00
112 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (110 bp):
GCTCAACTTCACAGCGAAGGGGCGACTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTC
AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAA
Found at i:14709479 original size:84 final size:83
Alignment explanation
Indices: 14709331--14709657 Score: 309
Period size: 84 Copynumber: 3.9 Consensus size: 83
14709321 GCTCCAAAAG
* * * *
14709331 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGCAGCATAACTTAAATCGAGAAG
1 ACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAG
*
14709396 GGTTATCTACCAACCAAAC
66 GGTTATCTGCCAA-CAAAC
* * *
14709415 ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAAATTAAGTCAAGAAG
1 ACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAG
* * *
14709480 GGCTATGTGCCAA-AGAC
66 GGTTATCTGCCAACAAAC
* * * * * * *** * * *
14709497 -CC-TCAAGTTCGATTACACTCAGCTTCGAGGGCAAATTATTTATGGCATAACTCAAGGCTAGAA
1 ACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAA
* *
14709560 GGGTTATCTGTCAACAAAG
65 GGGTTATCTGCCAACAAAC
* * * * * *
14709579 ACATTCGAGTTCGACTCCACTCAGCTCAAAGGCACCATCATTTGCAGCATAGCTCAAGGCAAGAA
1 ACCTTCGAGTTCGACTACACTCAGCTCCAAGGCA-CATCATTTGCAGCATAACTTAAGTCAAGAA
* *
14709644 AGGCTATCTGCCAA
65 GGGTTATCTGCCAA
14709658 ATACCTTCGA
Statistics
Matches: 193, Mismatches: 45, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
80 18 0.09
81 40 0.21
82 5 0.03
83 8 0.04
84 122 0.63
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (83 bp):
ACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAGTCAAGAAG
GGTTATCTGCCAACAAAC
Found at i:14709675 original size:165 final size:164
Alignment explanation
Indices: 14709391--14709692 Score: 390
Period size: 165 Copynumber: 1.8 Consensus size: 164
14709381 ACTTAAATCG
* * *
14709391 AGAAGGGTTATCTACCAACCAAACACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATT
1 AGAAGGGTTATCTACCAACCAAACACATTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATT
* * * *
14709456 TGCAACATAAATTAAGTCAAGAAGGGCTATGTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
66 TGCAACATAAATCAAGGCAAGAAAGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGC-
14709521 TCGAGGGCAAATTATTTATGGCATAACTCAAGGCT
130 TCGAGGGCAAATTATTTATGGCATAACTCAAGGCT
** * *
14709556 AGAAGGGTTATCTGTCAA-CAAAGACATTCGAGTTCGACTCCACTCAGCTCAAAGGCACCATCAT
1 AGAAGGGTTATCTACCAACCAAACACATTCGAGTTCGACTACACTCAGCTCAAAGGCA-CATCAT
* ** * * * * * * *
14709620 TTGCAGCATAGCTCAAGGCAAGAAAGGCTATCTGCCAAATACCTTCGATTTCGATTCCATTTAGC
65 TTGCAACATAAATCAAGGCAAGAAAGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGC
14709685 TCGAGGGC
130 TCGAGGGC
14709693 GTATCAACCA
Statistics
Matches: 115, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
164 42 0.37
165 73 0.63
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (164 bp):
AGAAGGGTTATCTACCAACCAAACACATTCGAGTTCGACTACACTCAGCTCAAAGGCACATCATT
TGCAACATAAATCAAGGCAAGAAAGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCT
CGAGGGCAAATTATTTATGGCATAACTCAAGGCT
Found at i:14710064 original size:8 final size:8
Alignment explanation
Indices: 14710013--14710066 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
14710003 TCTACAAAAA
14710013 TATTTTAT
1 TATTTTAT
*
14710021 TA-TATAT
1 TATTTTAT
14710028 T-TATTTAT
1 TAT-TTTAT
14710036 TATTATTAT
1 TATT-TTAT
14710045 TATATTT-T
1 TAT-TTTAT
14710053 TATTTTAT
1 TATTTTAT
14710061 TATTTT
1 TATTTT
14710067 TGTAGGCCCC
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
7 8 0.21
8 19 0.50
9 10 0.26
10 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TATTTTAT
Found at i:14710592 original size:14 final size:14
Alignment explanation
Indices: 14710548--14710593 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
14710538 ATATATTTCA
14710548 TTTTTTATTAATAT
1 TTTTTTATTAATAT
* *
14710562 TATTATATTAATA-
1 TTTTTTATTAATAT
*
14710575 TTTTTTATTATTAT
1 TTTTTTATTAATAT
14710589 TTTTT
1 TTTTT
14710594 CATGTTTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTTATTAATAT
Found at i:14710605 original size:14 final size:13
Alignment explanation
Indices: 14710547--14710593 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
14710537 TATATATTTC
*
14710547 ATTTTTTATTAAT
1 ATTTTTTATTATT
* *
14710560 ATTATTATATTAAT
1 ATT-TTTTATTATT
14710574 ATTTTTTATTATT
1 ATTTTTTATTATT
14710587 ATTTTTT
1 ATTTTTT
14710594 CATGTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATTTTTTATTATT
Found at i:14711072 original size:24 final size:24
Alignment explanation
Indices: 14711040--14711085 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
14711030 TCTTCCAGAT
*
14711040 GATGTATAAAACATCTATGTACAC
1 GATGTATAAAACATATATGTACAC
14711064 GATGTATAAAACATATATGTAC
1 GATGTATAAAACATATATGTAC
14711086 CATATCATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (24 bp):
GATGTATAAAACATATATGTACAC
Found at i:14714162 original size:59 final size:58
Alignment explanation
Indices: 14714102--14714589 Score: 384
Period size: 59 Copynumber: 8.3 Consensus size: 58
14714092 TCCCCTTTCT
* *
14714102 TTTTAGCACACGAAGTGCCCTATTCGAAAATCCATACCATT-AGTATGATTTCCTTATC-
1 TTTTAGCACACAAAGTGCCCTA-TCGGAAATCCATA-CATTCAGTATGATTTCCTTATCA
* ** ** * * * *
14714160 TTTGTAGCACCCTTAGTGCTTTATCTAGAAATCCATATATTCCA-TATGATTCCCTTACCA
1 TTT-TAGCACACAAAGTGCCCTATC-GGAAATCCATACATT-CAGTATGATTTCCTTATCA
* * ** *
14714220 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
1 TTTTAGCACACAAAGTGCCCTATC-GGAAATCCATACATTCAGTATGATTTCCTTATCA
** * * *
14714279 -TTTAGCACACTTAGTGCTCCATAT-GGAAATCTATACACTCAGTATGATTTCCTTACCA
1 TTTTAGCACACAAAGTGC-CC-TATCGGAAATCCATACATTCAGTATGATTTCCTTATCA
* * ** *
14714337 TTTTAGCACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA
1 TTTTAGCACACAAAGTGCCCTATC-GGAAATCCATACATTCAGTATGATTTCCTTATCA
** * * *
14714396 -TTTAGCACACTCAGTGCTCCATAT-GGAAATCTATACACTCAGTATGATTTCCTTACCA
1 TTTTAGCACACAAAGTGC-CC-TATCGGAAATCCATACATTCAGTATGATTTCCTTATCA
* * * * * ** *
14714454 TATTAGCACATAAAATGTCCTATCTAGAAATCCATATTTTCAATATGATTTCCTTATCA
1 TTTTAGCACACAAAGTGCCCTATC-GGAAATCCATACATTCAGTATGATTTCCTTATCA
* * * *
14714513 -TTTAGCACACTCAA-TGCTCCATAT-GGAAATCTATACACTCAGTATGATTTCCTTACCA
1 TTTTAGCACAC-AAAGTGC-CC-TATCGGAAATCCATACATTCAGTATGATTTCCTTATCA
14714571 TTTTAGCACACAAAGTGCC
1 TTTTAGCACACAAAGTGCC
14714590 ATTCGGTAAT
Statistics
Matches: 333, Mismatches: 76, Indels: 42
0.74 0.17 0.09
Matches are distributed among these distances:
57 6 0.02
58 136 0.41
59 178 0.53
60 13 0.04
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (58 bp):
TTTTAGCACACAAAGTGCCCTATCGGAAATCCATACATTCAGTATGATTTCCTTATCA
Found at i:14714342 original size:117 final size:117
Alignment explanation
Indices: 14714045--14714589 Score: 704
Period size: 117 Copynumber: 4.6 Consensus size: 117
14714035 CCCTTTAATA
* * * * * * * *
14714045 TTAGCACTCTCAGTGCTCTATCTGGAAGATC-ATACACTTAGTATGCTTCCCCTT-TCTTTTTAG
1 TTAGCACACTCAGTGCTCCATATGGAA-ATCTATACACTCAGTATGATT-TCCTTACCATTTTAG
** * * ** * *
14714108 CACACGAAGTGCCCTAT-TCGAAAATCCATACCATT-AGTATGATTTCCTTATCTT
64 CACATAAAATGCCCTATCT-GGAAATCCATA-TTTTCAATATGATTTCCTTATCAT
* * ** * * * * * *
14714162 TGTAGCACCCTTAGTGCTTTATCTAGAAATCCATATATTCCA-TATGATTCCCTTACCATTTTAG
1 T-TAGCACACTCAGTGCTCCATATGGAAATCTATACACT-CAGTATGATTTCCTTACCATTTTAG
14714226 CACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
64 CACATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
*
14714280 TTAGCACACTTAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
1 TTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
14714345 CATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
66 CATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
*
14714397 TTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATATTAGCA
1 TTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
* *
14714462 CATAAAATGTCCTATCTAGAAATCCATATTTTCAATATGATTTCCTTATCAT
66 CATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
*
14714514 TTAGCACACTCAATGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
1 TTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
* *
14714579 CACAAAGTGCC
66 CATAAAATGCC
14714590 ATTCGGTAAT
Statistics
Matches: 385, Mismatches: 36, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
116 2 0.01
117 299 0.78
118 82 0.21
119 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.36
Consensus pattern (117 bp):
TTAGCACACTCAGTGCTCCATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCA
CATAAAATGCCCTATCTGGAAATCCATATTTTCAATATGATTTCCTTATCAT
Found at i:14720815 original size:20 final size:20
Alignment explanation
Indices: 14720790--14720827 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14720780 AAAAATGTGT
*
14720790 ATCGATGCACTTCTACAGGC
1 ATCGATGCACTGCTACAGGC
14720810 ATCGATGCACTGCTACAG
1 ATCGATGCACTGCTACAG
14720828 TGCTGCTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (20 bp):
ATCGATGCACTGCTACAGGC
Found at i:14721504 original size:59 final size:58
Alignment explanation
Indices: 14721441--14721849 Score: 370
Period size: 59 Copynumber: 7.0 Consensus size: 58
14721431 CTTAGTGTTT
*
14721441 TATCTGGAAATCCATACATTCCATATGATTCCCTTACCATTTTAGCACATCAAATGCCC
1 TATCTGGAAATCCATACATT-CATATGATTTCCTTACCATTTTAGCACATCAAATGCCC
** * *
14721500 TATCTGGAAATCCATATTTTCAATATGATTTCCTTATCA-TTTAGCACACTC-AGTGCTCC
1 TATCTGGAAATCCATACATTC-ATATGATTTCCTTACCATTTTAGCACA-TCAAATGC-CC
* * * *
14721559 -ATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCC
1 TATCTGGAAATCCATACATTCA-TATGATTTCCTTACCATTTTAGCACATCAAATGCCC
** * * *
14721617 TATCTGGAAATCCATATTTTTAATATGATTTCCTTATCA-TTTAGCACACTC-AGTGCTCC
1 TATCTGGAAATCCATA-CATTCATATGATTTCCTTACCATTTTAGCACA-TCAAATGC-CC
* * * * **
14721676 -ATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCTA
1 TATCTGGAAATCCATACATTCA-TATGATTTCCTTACCATTTTAGCACATCAAATGCCC
* ** * *
14721734 TATCTTGAAATCCATATTTTCAATATGATTTCCTTATCA-TTTAGCACACTC-AGTGCTCC
1 TATCTGGAAATCCATACATTC-ATATGATTTCCTTACCATTTTAGCACA-TCAAATGC-CC
* * *
14721793 -ATATGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACA-CAAAGTGCC
1 TATCTGGAAATCCATACATTCA-TATGATTTCCTTACCATTTTAGCACATCAAA-TGCC
14721850 ATTCGATAAT
Statistics
Matches: 277, Mismatches: 52, Indels: 43
0.74 0.14 0.12
Matches are distributed among these distances:
57 5 0.02
58 133 0.48
59 136 0.49
60 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (58 bp):
TATCTGGAAATCCATACATTCATATGATTTCCTTACCATTTTAGCACATCAAATGCCC
Found at i:14721607 original size:117 final size:117
Alignment explanation
Indices: 14721445--14721849 Score: 704
Period size: 117 Copynumber: 3.5 Consensus size: 117
14721435 GTGTTTTATC
* * * *
14721445 TGGAAATCCATACATTCCA-TATGATTCCCTTACCATTTTAGCACATCAAATGCCCTATCTGGAA
1 TGGAAATCTATACACT-CAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAA
14721509 ATCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
65 ATCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
14721562 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAA
1 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAA
*
14721627 TCCATATTTTTAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
66 TCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
** *
14721679 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCTATATCTTGAAA
1 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAA
14721744 TCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
66 TCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
* *
14721796 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCC
1 TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCC
14721850 ATTCGATAAT
Statistics
Matches: 275, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
116 2 0.01
117 273 0.99
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (117 bp):
TGGAAATCTATACACTCAGTATGATTTCCTTACCATTTTAGCACATAAAATGCCCTATCTGGAAA
TCCATATTTTCAATATGATTTCCTTATCATTTAGCACACTCAGTGCTCCATA
Found at i:14725035 original size:18 final size:16
Alignment explanation
Indices: 14725005--14725059 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 16
14724995 AACAAAAATG
14725005 AAAAAT-ATTTAATTA
1 AAAAATAATTTAATTA
14725020 AAAAATAACTTTTAATTA
1 AAAAATAA--TTTAATTA
14725038 AAATAA-AATTTAATTA
1 AAA-AATAATTTAATTA
14725054 AAAAAT
1 AAAAAT
14725060 TGCATTCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.23
16 12 0.34
18 13 0.37
19 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAAATAATTTAATTA
Found at i:14725133 original size:112 final size:112
Alignment explanation
Indices: 14725010--14725232 Score: 254
Period size: 114 Copynumber: 2.0 Consensus size: 112
14725000 AAATGAAAAA
*
14725010 TATTTAATTAAAAAA-TAACTTTTAATTAA-AATAAAATTTAATTAAAAAATTGCATTCATATTT
1 TATTTAATTAAAAAAGTAACTTTTAA-TAATAATAAAATTTAATTAAAAAATTAC-TTCATATTT
* *
14725073 AGTGTAGTTTATAAAAGTTT-AAATTTAAAAAAATATATTATTTTTTAAT
64 AGTGTAGTATATAAAA-TTTGAAATTAAAAAAAATATATTATTTTTTAAT
* * ** * ** * * *
14725122 TATTTAATTAAAAAAGTGTAATTTTTTATAATTTTTAAATTTTTTTGAAATATTACTTGATATTT
1 TATTTAATTAAAAAA--GTAACTTTTAATAATAATAAAATTTAATTAAAAAATTACTTCATATTT
*
14725187 AGTGTAGTATATAAAATTTGAAATTAAAAAAAATATGTTATTTTTT
64 AGTGTAGTATATAAAATTTGAAATTAAAAAAAATATATTATTTTTT
14725233 GAAATTTGGA
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
112 15 0.16
113 3 0.03
114 50 0.54
115 24 0.26
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (112 bp):
TATTTAATTAAAAAAGTAACTTTTAATAATAATAAAATTTAATTAAAAAATTACTTCATATTTAG
TGTAGTATATAAAATTTGAAATTAAAAAAAATATATTATTTTTTAAT
Found at i:14725269 original size:32 final size:32
Alignment explanation
Indices: 14725200--14725300 Score: 130
Period size: 32 Copynumber: 3.1 Consensus size: 32
14725190 GTAGTATATA
14725200 AAATTTGAAATTAAAAAAAATATGTTATTTTTTG
1 AAATTTGAAATT--AAAAAATATGTTATTTTTTG
* * * *
14725234 AAATTTGGAATTAAAGAATATGTTAATTTTAG
1 AAATTTGAAATTAAAAAATATGTTATTTTTTG
* *
14725266 AAATTTGTATTTAAAAAATATGTTATTTTTTG
1 AAATTTGAAATTAAAAAATATGTTATTTTTTG
14725298 AAA
1 AAA
14725301 ATTTTTAAAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
32 47 0.81
34 11 0.19
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (32 bp):
AAATTTGAAATTAAAAAATATGTTATTTTTTG
Found at i:14725314 original size:32 final size:31
Alignment explanation
Indices: 14725212--14725314 Score: 107
Period size: 32 Copynumber: 3.2 Consensus size: 31
14725202 ATTTGAAATT
*
14725212 AAAAAAAATATGTTATTTTTTGAAATTTGGA
1 AAAAAAAATATGTTATTTTTTGAAATTTGTA
* * * *
14725243 ATTAAAGAATATGTTAATTTTAGAAATTTGTA
1 A-AAAAAAATATGTTATTTTTTGAAATTTGTA
** *
14725275 TTTAAAAAATATGTTATTTTTTGAAAATTTTTA
1 -AAAAAAAATATGTTATTTTTTG-AAATTTGTA
14725308 AAAAAAA
1 AAAAAAA
14725315 TTGAAAAATA
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
31 1 0.02
32 48 0.84
33 8 0.14
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.44
Consensus pattern (31 bp):
AAAAAAAATATGTTATTTTTTGAAATTTGTA
Found at i:14726210 original size:11 final size:11
Alignment explanation
Indices: 14726194--14726222 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14726184 GATAAAATCG
14726194 TTAGTTTATCA
1 TTAGTTTATCA
14726205 TTAGTTTATCA
1 TTAGTTTATCA
14726216 TTA-TTTA
1 TTAGTTTA
14726223 CTAATAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (11 bp):
TTAGTTTATCA
Found at i:14726287 original size:14 final size:14
Alignment explanation
Indices: 14726264--14726295 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
14726254 AAATAATACA
14726264 AGTT-AAAAAACAT
1 AGTTAAAAAAACAT
14726277 AGTTAAAAAAACAT
1 AGTTAAAAAAACAT
14726291 AGTTA
1 AGTTA
14726296 TAGCACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (14 bp):
AGTTAAAAAAACAT
Found at i:14729657 original size:92 final size:92
Alignment explanation
Indices: 14729452--14729662 Score: 221
Period size: 92 Copynumber: 2.3 Consensus size: 92
14729442 AATATTTGTC
* * * *
14729452 CCTT-GAGTGAGGCGTCGCTGATTCCAAATGTCGTGAATCGAGAAAATATTGAATAAGTTATTCT
1 CCTTCGAGTGAGGCGTCGCTGATTCAAAATGTCATGAATCAAGAAAAGATTGAATAAGTTATTCT
* *
14729516 CATGAATTCTCTAATGGAAATGTTGGT
66 CATGAATTATCTAATGGAAAGGTTGGT
** ** * ** * *
14729543 CCTTCGAGTGAGGTTTTACTGATTTAAAATGTCATGAATCAAGCCAAGGTTGAATAAGTTCTTCT
1 CCTTCGAGTGAGGCGTCGCTGATTCAAAATGTCATGAATCAAGAAAAGATTGAATAAGTTATTCT
* *
14729608 CATGAATTATTTATTGGAAAGGTTGGCT
66 CATGAATTATCTAATGGAAAGGTTGG-T
*
14729636 CC-TC-ATGTGAGGCGACGCTGATTCAAA
1 CCTTCGA-GTGAGGCGTCGCTGATTCAAA
14729663 GTATTATGAA
Statistics
Matches: 94, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
91 5 0.05
92 86 0.91
93 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (92 bp):
CCTTCGAGTGAGGCGTCGCTGATTCAAAATGTCATGAATCAAGAAAAGATTGAATAAGTTATTCT
CATGAATTATCTAATGGAAAGGTTGGT
Found at i:14729705 original size:59 final size:59
Alignment explanation
Indices: 14729642--14729754 Score: 147
Period size: 59 Copynumber: 1.9 Consensus size: 59
14729632 GGCTCCTCAT
*
14729642 GTGAGGCGA-CGCTGATTCAAAGTATTATGAATCGAGCAAAGGAAATGTTAATCCCTCGA
1 GTGAGGC-ATCGCTGATTCAAAGTATTATGAATCGAGCAAAGGAAATATTAATCCCTCGA
* * * * * *
14729701 GTGAGGCATTGCTGATTCGAAGTGTTGTGAATCGAGTAAATGAAATATTAATCC
1 GTGAGGCATCGCTGATTCAAAGTATTATGAATCGAGCAAAGGAAATATTAATCC
14729755 TTCAAGTAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
58 1 0.02
59 45 0.98
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (59 bp):
GTGAGGCATCGCTGATTCAAAGTATTATGAATCGAGCAAAGGAAATATTAATCCCTCGA
Found at i:14729831 original size:38 final size:37
Alignment explanation
Indices: 14729784--14730058 Score: 191
Period size: 38 Copynumber: 7.4 Consensus size: 37
14729774 GTTTTAAGAA
*
14729784 AAACAATCTCAAGTGAGATAAATCTACTGTTTAGAGTG
1 AAACAATCTCAAGTGAGATAAATCTTCTGTTTA-AGTG
** * * **
14729822 AAATTATCTCAAGTAAGATAAATCTTAT-TTTAAGAA
1 AAACAATCTCAAGTGAGATAAATCTTCTGTTTAAGTG
* *
14729858 AAACAATCTGAAGTGAGATAAATCTTCTGTTTCGAGTG
1 AAACAATCTCAAGTGAGATAAATCTTCTGTTT-AAGTG
* ** ** * *
14729896 AAACTATCTCAAGCAAGATGGATCTTGT-TTTAAG-A
1 AAACAATCTCAAGTGAGATAAATCTTCTGTTTAAGTG
* * * * *
14729931 AAAAAATATCAAGTGAGCT-AATCTTCTATTTTGAGTG
1 AAACAATCTCAAGTGAGATAAATCTTCT-GTTTAAGTG
* *
14729968 AAACAATCTCAAGCGAGATAAAATCTTTTGTTTCAAGTG
1 AAACAATCTCAAGTGAGAT-AAATCTTCTGTTT-AAGTG
** * * * **
14730007 AAATTATCTCAAGCGAGATGAATCTTAT-TTTAAGAA
1 AAACAATCTCAAGTGAGATAAATCTTCTGTTTAAGTG
*
14730043 AAATAATCTCAAGTGA
1 AAACAATCTCAAGTGA
14730059 TTTTAGTCGG
Statistics
Matches: 180, Mismatches: 49, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
34 6 0.03
35 13 0.07
36 49 0.27
37 28 0.16
38 56 0.31
39 28 0.16
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (37 bp):
AAACAATCTCAAGTGAGATAAATCTTCTGTTTAAGTG
Found at i:14729854 original size:74 final size:74
Alignment explanation
Indices: 14729775--14729994 Score: 291
Period size: 74 Copynumber: 3.0 Consensus size: 74
14729765 GCGTACTTTG
* * *
14729775 TTTTAAGAAAAACAATCTCAAGTGAGATAAATCTACTGTTTAGAGTGAAATTATCTCAAGTAAGA
1 TTTTAAGAAAAACAATCTCAAGTGAGATAAATCTTCTGTTTAGAGTGAAACTATCTCAAGCAAGA
14729840 TAAATCTTA
66 TAAATCTTA
* *
14729849 TTTTAAGAAAAACAATCTGAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGA
1 TTTTAAGAAAAACAATCTCAAGTGAGATAAATCTTCTGTTTAGAGTGAAACTATCTCAAGCAAGA
** *
14729914 TGGATCTTG
66 TAAATCTTA
* * * * * *
14729923 TTTTAAGAAAAA-AATATCAAGTGAGCT-AATCTTCTATTTTGAGTGAAACAATCTCAAGCGAGA
1 TTTTAAGAAAAACAATCTCAAGTGAGATAAATCTTCTGTTTAGAGTGAAACTATCTCAAGCAAGA
14729986 TAAAATCTT
66 T-AAATCTT
14729995 TTGTTTCAAG
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
72 33 0.26
73 17 0.13
74 78 0.61
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.32
Consensus pattern (74 bp):
TTTTAAGAAAAACAATCTCAAGTGAGATAAATCTTCTGTTTAGAGTGAAACTATCTCAAGCAAGA
TAAATCTTA
Found at i:14730018 original size:111 final size:111
Alignment explanation
Indices: 14729858--14730058 Score: 305
Period size: 111 Copynumber: 1.8 Consensus size: 111
14729848 ATTTTAAGAA
* * * * *
14729858 AAACAATCTGAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCAAGATGGATCTTG
1 AAACAATCTCAAGCGAGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCAAGATGAATCTTA
14729923 TTTTAAGAAAAA-AATATCAAGTGAGCTAATCTTCTATTTTGAGTG
66 TTTTAAGAAAAATAATATCAAGTGAGCTAATCTTCTATTTTGAGTG
* * *
14729968 AAACAATCTCAAGCGAGATAAAATCTTTTGTTTCAAGTGAAATTATCTCAAGCGAGATGAATCTT
1 AAACAATCTCAAGCGAGAT-AAATCTTCTGTTTCAAGTGAAACTATCTCAAGCAAGATGAATCTT
*
14730033 ATTTTAAGAAAAATAATCTCAAGTGA
65 ATTTTAAGAAAAATAATATCAAGTGA
14730059 TTTTAGTCGG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
110 17 0.21
111 52 0.65
112 11 0.14
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (111 bp):
AAACAATCTCAAGCGAGATAAATCTTCTGTTTCAAGTGAAACTATCTCAAGCAAGATGAATCTTA
TTTTAAGAAAAATAATATCAAGTGAGCTAATCTTCTATTTTGAGTG
Found at i:14730162 original size:13 final size:13
Alignment explanation
Indices: 14730144--14730168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14730134 ATTACAGACA
14730144 TGTATATGAAGAT
1 TGTATATGAAGAT
14730157 TGTATATGAAGA
1 TGTATATGAAGA
14730169 CTGTTCAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (13 bp):
TGTATATGAAGAT
Found at i:14730407 original size:38 final size:37
Alignment explanation
Indices: 14730356--14731268 Score: 459
Period size: 38 Copynumber: 24.5 Consensus size: 37
14730346 TTGTTGTTGA
*
14730356 ATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* *
14730394 ATCTCAAGCGAGATAAAATCATCTGTTTCCAGTGAAACT
1 ATCTCAAGCGAGAT-AAATC-TTTGTTTCGAGTGAAACT
*** *
14730433 ATCTCAAGCGAGATAAAAAAAATT-CTTCGAGTGAAAACT
1 ATCTCAAGCGAGAT--AAATCTTTGTTTCGAGTG-AAACT
* * ** * *
14730472 ATCTCAAGCAAGATGAAT-TTTGTTTTAAG-AAAATCA
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAA-CT
** *
14730508 ATCTCAAATGAGATAAATCTTATGTTTCTAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* * ** ** *
14730546 ATCTCAAACGAGAT-GAT-TATTGTTTTAAGAAAAACA
1 ATCTCAAGCGAGATAAATCT-TTGTTTCGAGTGAAACT
* ** * * * *
14730582 ATATTGAGTGAGCTAAATCTTCTTGTTTCGAGTAAAAATT
1 ATCTCAAGCGAGATAAATC-T-TTGTTTCGAGT-GAAACT
* * ** ** *
14730622 GTCTCAAGCGAGACAAATC-TTGTTTTAAGAAAAACA
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
* *
14730658 ATCTCAAGTGAGATAAATCTTCTATTTCGAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* * *
14730696 ATCTCAAACGAGATGAAA--TTTGTTT-TA-TGAAAAACA
1 ATCTCAAGCGAGAT-AAATCTTTGTTTCGAGTG--AAACT
* * * * * *
14730732 ATTTCAAGTGAGATAAATATTATATATCTAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* * * ** * *
14730770 ATCTTAAGAGAGATGAATC-TTGTTTTAAG-AAAAAT
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
* * * *
14730805 GATTTGAAGTGAGATAAATCTTATGTTTCGAGTGAAATT
1 -ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* * * ** * *
14730844 TTCTCAAGCGAAATGAATC-TTGTTTTAAG-AAAAAT
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
* * *
14730879 AATCTTAAGTGAGATAAATCTTTTGTTTCGAGTGAAGCT
1 -ATCTCAAGCGAGATAAATC-TTTGTTTCGAGTGAAACT
* ** * *
14730918 ATCTCAAGCGAGATGAATC-TTGTTTTAAG-AAAAAT
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
*
14730953 AATCTCAAGTGAGATAAATCTTTTGTTTCGAGTGAAACT
1 -ATCTCAAGCGAGATAAATC-TTTGTTTCGAGTGAAACT
* ** * *
14730992 ATCTCAAACGAGATAAATC-TTGTTTTAAG-AAGAACA
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGA-AACT
* * *
14731028 ATCTCAAGTGAGATAAAT-TTTCTTAAT-AAGTGAAACT
1 ATCTCAAGCGAGATAAATCTTTGTT--TCGAGTGAAACT
* * *
14731065 ATCTCAAGCGAGATAAAATTTTTGCTTCGAGTGAAAAT
1 ATCTCAAGCGAGAT-AAATCTTTGTTTCGAGTGAAACT
** ** *
14731103 ATCTCAAGCGAGATAAATC-TTGTTTTAAGAAAAACA
1 ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
* ** * *
14731139 ACCTCAAGTAAGATAAATTTTCTATTTCGAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* ** *
14731177 ATCTCAAGCGAGATGAATC-TTGTTTTC-AGCAAAACA
1 ATCTCAAGCGAGATAAATCTTTG-TTTCGAGTGAAACT
* *
14731213 ATCTCAAGTGAGATAAATCTTCTGCTTCGAGTGAAACT
1 ATCTCAAGCGAGATAAATCTT-TGTTTCGAGTGAAACT
* *
14731251 ATCTCAAGCAAGAAAAAT
1 ATCTCAAGCGAGATAAAT
14731269 ATTGTTTTAA
Statistics
Matches: 642, Mismatches: 183, Indels: 100
0.69 0.20 0.11
Matches are distributed among these distances:
34 2 0.00
35 19 0.03
36 222 0.35
37 63 0.10
38 228 0.36
39 85 0.13
40 23 0.04
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (37 bp):
ATCTCAAGCGAGATAAATCTTTGTTTCGAGTGAAACT
Found at i:14730571 original size:74 final size:74
Alignment explanation
Indices: 14730355--14731078 Score: 739
Period size: 74 Copynumber: 9.7 Consensus size: 74
14730345 GTTGTTGTTG
* *
14730355 AATCTCAAGTGAGATAAATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCATCTGT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGAT-GAATC-T-TGT
** *
14730420 TTCCAGTGAAA-C
63 TTTAAG-AAAATC
* * **** * *
14730432 TATCTCAAGCGAGATAAAAAAAAT-TCTTCGAGTGAAAACTATCTCAAGCAAGATGAATTTTGTT
1 AATCTCAAGTGAGATAAATCTTATGT-TTCGAGTG-AAACTATCTCAAGCGAGATGAATCTTGTT
14730496 TTAAGAAAATC
64 TTAAGAAAATC
* * * * *
14730507 AATCTCAAATGAGATAAATCTTATGTTTCTAGTGAAACTATCTCAAACGAGATGATTATTGTTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
*
14730572 AAGAAAAAC
66 AAGAAAATC
* ** * * * * * **
14730581 AATATTGAGTGAGCTAAATCTTCTTGTTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTT
1 AATCTCAAGTGAGATAAATCTT-ATGTTTCGAGT-GAAACTATCTCAAGCGAGATGAATCTTGTT
*
14730646 TTAAGAAAAAC
64 TTAAGAAAATC
* * *
14730657 AATCTCAAGTGAGATAAATCTTCTATTTCGAGTGAAACTATCTCAAACGAGATGAAAT-TTGTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATG-AATCTTGTTT
* *
14730721 TATGAAAAAC
65 TAAGAAAATC
* * * * * * *
14730731 AATTTCAAGTGAGATAAATATTATATATCTAGTGAAACTATCTTAAGAGAGATGAATCTTGTTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
14730796 AAGAAAAAT-
66 AAG-AAAATC
* * * * * *
14730805 GATTTGAAGTGAGATAAATCTTATGTTTCGAGTGAAATTTTCTCAAGCGAAATGAATCTTGTTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
14730870 AAGAAAAAT-
66 AAG-AAAATC
* * *
14730879 AATCTTAAGTGAGATAAATCTTTTGTTTCGAGTGAAGCTATCTCAAGCGAGATGAATCTTGTTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
14730944 AAGAAAAAT-
66 AAG-AAAATC
* * *
14730953 AATCTCAAGTGAGATAAATCTTTTGTTTCGAGTGAAACTATCTCAAACGAGATAAATCTTGTTTT
1 AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
14731018 AAGAAGAA-C
66 AAGAA-AATC
* *
14731027 AATCTCAAGTGAGATAAAT-TT-TCTTAAT-AAGTGAAACTATCTCAAGCGAGAT
1 AATCTCAAGTGAGATAAATCTTATGTT--TCGAGTGAAACTATCTCAAGCGAGAT
14731079 AAAATTTTTG
Statistics
Matches: 544, Mismatches: 90, Indels: 30
0.82 0.14 0.05
Matches are distributed among these distances:
72 3 0.01
73 29 0.05
74 355 0.65
75 57 0.10
76 54 0.10
77 28 0.05
78 18 0.03
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (74 bp):
AATCTCAAGTGAGATAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTT
AAGAAAATC
Found at i:14731088 original size:111 final size:112
Alignment explanation
Indices: 14730954--14731197 Score: 359
Period size: 111 Copynumber: 2.2 Consensus size: 112
14730944 AAGAAAAATA
* * *
14730954 ATCTCAAGTGAGATAAATCTTTTGTTTCGAGTGAAACTATCTCAAACGAGATAAATCTTGTTTTA
1 ATCTCAAGCGAGATAAATCTTTTGCTTCGAGTGAAAATATCTCAAACGAGATAAATCTTGTTTTA
* * *
14731019 AGAAGAACAATCTCAAGTGAGATAAATTTTCT-TAAT-AAGTGAAACT
66 AGAAAAACAACCTCAAGTAAGATAAATTTTCTAT-ATCAAGTGAAACT
*
14731065 ATCTCAAGCGAGATAAAAT-TTTTGCTTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTT
1 ATCTCAAGCGAGAT-AAATCTTTTGCTTCGAGTGAAAATATCTCAAACGAGATAAATCTTGTTTT
* *
14731129 AAGAAAAACAACCTCAAGTAAGATAAATTTTCTATTTCGAGTGAAACT
65 AAGAAAAACAACCTCAAGTAAGATAAATTTTCTATATCAAGTGAAACT
*
14731177 ATCTCAAGCGAGATGAATCTT
1 ATCTCAAGCGAGATAAATCTT
14731198 GTTTTCAGCA
Statistics
Matches: 119, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
111 89 0.75
112 30 0.25
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (112 bp):
ATCTCAAGCGAGATAAATCTTTTGCTTCGAGTGAAAATATCTCAAACGAGATAAATCTTGTTTTA
AGAAAAACAACCTCAAGTAAGATAAATTTTCTATATCAAGTGAAACT
Found at i:14731124 original size:259 final size:259
Alignment explanation
Indices: 14730831--14731344 Score: 751
Period size: 259 Copynumber: 2.0 Consensus size: 259
14730821 AATCTTATGT
* * * * * * *
14730831 TTCGAGTGAAATTTTCTCAAGCGAAATGAATCTTGTTTTAAGAAAAATAATCTTAAGTGAGATAA
1 TTCGAGTGAAAATATCTCAAGCGAAATAAATCTTGTTTTAAGAAAAACAACCTCAAGTAAGATAA
* * *
14730896 ATCTTT-TGTTTCGAGTGAAGCTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAAATAATCTCA
66 AT-TTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCA
* * * * * *
14730960 AGTGAGATAAATCTTTTGTTTCGAGTGAAACTATCTCAAACGAGATAAATCTTGTTTTAAGAAGA
130 AGTGAGATAAATCTTCTGCTTCGAGTGAAACTATCTCAAACAAGAAAAATATTGTTTTAAGAAAA
* * *
14731025 ACAATCTCAAGTGAGATAAATTTTCTTAATAAGTGAAACTATCTCAAGCGAGATAAAATTTTTGC
195 ACAATCTCAAATGAGATAAATTTTCGTAATAAGTGAAACTATCTCAAGCGAGACAAAATTTTTGC
*
14731090 TTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAACCTCAAGTAAGATAA
1 TTCGAGTGAAAATATCTCAAGCGAAATAAATCTTGTTTTAAGAAAAACAACCTCAAGTAAGATAA
* *
14731155 ATTTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTCAGCAAAACAATCTCAA
66 ATTTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAA
*
14731220 GTGAGATAAATCTTCTGCTTCGAGTGAAACTATCTCAAGCAAGAAAAATATTGTTTTAAGAAAAA
131 GTGAGATAAATCTTCTGCTTCGAGTGAAACTATCTCAAACAAGAAAAATATTGTTTTAAGAAAAA
* * * ** *
14731285 CAATCTCAAATGTGATAAATTTTCGTATTAATTGAATTTGTCTCAAGCGAGACAAAATTT
196 CAATCTCAAATGAGATAAATTTTCGTAATAAGTGAAACTATCTCAAGCGAGACAAAATTT
14731345 GTTTGGAAAT
Statistics
Matches: 225, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
258 3 0.01
259 222 0.99
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (259 bp):
TTCGAGTGAAAATATCTCAAGCGAAATAAATCTTGTTTTAAGAAAAACAACCTCAAGTAAGATAA
ATTTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGAATCTTGTTTTAAGAAAAACAATCTCAA
GTGAGATAAATCTTCTGCTTCGAGTGAAACTATCTCAAACAAGAAAAATATTGTTTTAAGAAAAA
CAATCTCAAATGAGATAAATTTTCGTAATAAGTGAAACTATCTCAAGCGAGACAAAATTTTTGC
Found at i:14731168 original size:74 final size:74
Alignment explanation
Indices: 14731028--14731313 Score: 322
Period size: 74 Copynumber: 3.8 Consensus size: 74
14731018 AAGAAGAACA
* * * * ** * * **
14731028 ATCTCAAGTGAGATAAATTTTCTTAATAAGTGAAACTATCTCAAGCGAGATAAAATTTT-TGCTT
1 ATCTCAAGCGAGATAAATCTTGTT-TTAAGAAAAACAATCTCAAGTGAGAT-AAATTTTCTATTT
*
14731092 CGAGTGAAAAT
64 CGAGTGAAACT
* *
14731103 ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAACCTCAAGTAAGATAAATTTTCTATTTCG
1 ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTCTATTTCG
14731168 AGTGAAACT
66 AGTGAAACT
* * * * **
14731177 ATCTCAAGCGAGATGAATCTTGTTTTCAGCAAAACAATCTCAAGTGAGATAAATCTTCTGCTTCG
1 ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTCTATTTCG
14731242 AGTGAAACT
66 AGTGAAACT
* * * * *
14731251 ATCTCAAGCAAGAAAAATATTGTTTTAAGAAAAACAATCTCAAATGTGATAAATTTTCGTATT
1 ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTC-TATT
14731314 AATTGAATTT
Statistics
Matches: 177, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
73 7 0.04
74 147 0.83
75 23 0.13
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (74 bp):
ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTCTATTTCG
AGTGAAACT
Found at i:14731201 original size:185 final size:187
Alignment explanation
Indices: 14730880--14731268 Score: 547
Period size: 185 Copynumber: 2.1 Consensus size: 187
14730870 AAGAAAAATA
* * * ** *
14730880 ATCTTAAGTGAGAT-AAATCTTTTGTTTCGAGTGAAGCTATCTCAAGCGAGATGAATCTTGTTTT
1 ATCTCAAGCGAGATAAAATCTTTTGCTTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTT
* * * *
14730944 AAGAAAAATAATCTCAAGTGAGATAAATCTTTTGTTTCGAGTGAAACTATCTCAAACGAGATAAA
66 AAGAAAAACAACCTCAAGTAAGATAAATCTTTTATTTCGAGTGAAACTATCTCAAACGAGATAAA
* *
14731009 TCTTGTTTTAAG-AAGAACAATCTCAAGTGAGATAAATTTTCTTAAT-AAGTGAAACT
131 TCTTGTTTTAAGCAA-AACAATCTCAAGTGAGATAAATCTTCTGAATCAAGTGAAACT
14731065 ATCTCAAGCGAGATAAAAT-TTTTGCTTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTT
1 ATCTCAAGCGAGATAAAATCTTTTGCTTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTT
* *
14731129 AAGAAAAACAACCTCAAGTAAGATAAAT-TTTCTATTTCGAGTGAAACTATCTCAAGCGAGATGA
66 AAGAAAAACAACCTCAAGTAAGATAAATCTTT-TATTTCGAGTGAAACTATCTCAAACGAGATAA
* ** *
14731193 ATCTTGTTTTCAGCAAAACAATCTCAAGTGAGATAAATCTTCTGCTTCGAGTGAAACT
130 ATCTTGTTTTAAGCAAAACAATCTCAAGTGAGATAAATCTTCTGAATCAAGTGAAACT
*
14731251 ATCTCAAGCAAGA-AAAAT
1 ATCTCAAGCGAGATAAAAT
14731269 ATTGTTTTAA
Statistics
Matches: 181, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
184 3 0.02
185 151 0.83
186 27 0.15
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (187 bp):
ATCTCAAGCGAGATAAAATCTTTTGCTTCGAGTGAAAATATCTCAAGCGAGATAAATCTTGTTTT
AAGAAAAACAACCTCAAGTAAGATAAATCTTTTATTTCGAGTGAAACTATCTCAAACGAGATAAA
TCTTGTTTTAAGCAAAACAATCTCAAGTGAGATAAATCTTCTGAATCAAGTGAAACT
Found at i:14731342 original size:74 final size:73
Alignment explanation
Indices: 14731060--14731348 Score: 280
Period size: 74 Copynumber: 3.9 Consensus size: 73
14731050 TTAATAAGTG
* * * * * *
14731060 AAACTATCTCAAGCGAGATAAAATTTTTGCT-TCGAGTGAAAATATCTCAAGCGAGATAAATCTT
1 AAACAATCTCAAGTGAGAT-AAATTTTCG-TATTGAGTGAAACTATCTCAAGCGAGAAAAATCTT
14731124 GTTTTAAGAA
64 GTTTTAAGAA
* * **
14731134 AAACAACCTCAAGTAAGATAAATTTTC-TATTTCGAGTGAAACTATCTCAAGCGAGATGAATCTT
1 AAACAATCTCAAGTGAGATAAATTTTCGTA-TT-GAGTGAAACTATCTCAAGCGAGAAAAATCTT
* *
14731198 GTTTTCAGCA
64 GTTTTAAGAA
* * * *
14731208 AAACAATCTCAAGTGAGATAAATCTTCTGCT-TCGAGTGAAACTATCTCAAGCAAGAAAAATATT
1 AAACAATCTCAAGTGAGATAAATTTTC-G-TATTGAGTGAAACTATCTCAAGCGAGAAAAATCTT
14731272 GTTTTAAGAA
64 GTTTTAAGAA
* * * * ** *
14731282 AAACAATCTCAAATGTGATAAATTTTCGTATTAATTGAATTTGTCTCAAGCGAGACAAAAT-TTG
1 AAACAATCTCAAGTGAGATAAATTTTCGTATTGAGTGAAACTATCTCAAGCGAGA-AAAATCTTG
14731346 TTT
65 TTT
14731349 GGAAATGTCG
Statistics
Matches: 177, Mismatches: 30, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
71 1 0.01
72 1 0.01
73 33 0.19
74 140 0.79
75 1 0.01
77 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (73 bp):
AAACAATCTCAAGTGAGATAAATTTTCGTATTGAGTGAAACTATCTCAAGCGAGAAAAATCTTGT
TTTAAGAA
Found at i:14739821 original size:37 final size:37
Alignment explanation
Indices: 14739771--14739844 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
14739761 GTTCAACAAC
14739771 AGTCAATCCAACGATCTAAACTTTCAAATTTCTAGTT
1 AGTCAATCCAACGATCTAAACTTTCAAATTTCTAGTT
14739808 AGTCAATCCAACGATCTAAACTTTCAAATTTCTAGTT
1 AGTCAATCCAACGATCTAAACTTTCAAATTTCTAGTT
14739845 GCTGGTGTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (37 bp):
AGTCAATCCAACGATCTAAACTTTCAAATTTCTAGTT
Found at i:14741062 original size:17 final size:17
Alignment explanation
Indices: 14741040--14741076 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
14741030 CTAAATTCCT
14741040 TTATGTTTTCGATATCG
1 TTATGTTTTCGATATCG
14741057 TTATGTTTTCGATATCG
1 TTATGTTTTCGATATCG
14741074 TTA
1 TTA
14741077 GAGTGCACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.11, G:0.16, T:0.54
Consensus pattern (17 bp):
TTATGTTTTCGATATCG
Found at i:14747425 original size:27 final size:26
Alignment explanation
Indices: 14747373--14747425 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
14747363 ATCTGACATG
*
14747373 ACAGTTTCTAGAAGGTCCAGTCAGCA
1 ACAGTTTCTAGAAGATCCAGTCAGCA
* *
14747399 ACAGTTTTCTAGAAGATCTAGTTAGCA
1 ACAG-TTTCTAGAAGATCCAGTCAGCA
14747426 CCTCCTGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
ACAGTTTCTAGAAGATCCAGTCAGCA
Found at i:14754538 original size:20 final size:20
Alignment explanation
Indices: 14754513--14754560 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
14754503 ATATAAGTAT
14754513 CGATACCCCCTGAGAGGTAC
1 CGATACCCCCTGAGAGGTAC
14754533 CGATACCCCCTGAGAGGTAC
1 CGATACCCCCTGAGAGGTAC
14754553 CGATACCC
1 CGATACCC
14754561 TTGGTCTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.38, G:0.23, T:0.15
Consensus pattern (20 bp):
CGATACCCCCTGAGAGGTAC
Found at i:14760805 original size:14 final size:15
Alignment explanation
Indices: 14760786--14760814 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14760776 ACACAAGATT
14760786 TTTCAAAA-AAAAAA
1 TTTCAAAATAAAAAA
14760800 TTTCAAAATAAAAAA
1 TTTCAAAATAAAAAA
14760815 ATTATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (15 bp):
TTTCAAAATAAAAAA
Found at i:14767139 original size:12 final size:12
Alignment explanation
Indices: 14767108--14767141 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14767098 AGTTAGTAAG
14767108 ATAAAAATAATA
1 ATAAAAATAATA
**
14767120 ATCGAAATAATA
1 ATAAAAATAATA
14767132 ATAAAAATAA
1 ATAAAAATAA
14767142 AAAATCCTAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:14768082 original size:19 final size:19
Alignment explanation
Indices: 14768054--14768096 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14768044 CTTAATTGTG
*
14768054 AAAA-TTAAAAGTTAAATT
1 AAAATTTAAAAGTTAAATC
*
14768072 AAAATTTAAAAGTTAGATC
1 AAAATTTAAAAGTTAAATC
14768091 AAAATT
1 AAAATT
14768097 ACTTACCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (19 bp):
AAAATTTAAAAGTTAAATC
Found at i:14771981 original size:13 final size:13
Alignment explanation
Indices: 14771963--14771996 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14771953 AATGGGTAAT
* *
14771963 TTTGAAAACTATG
1 TTTGAAAACAAAG
14771976 TTTGAAAACAAAG
1 TTTGAAAACAAAG
14771989 TTTGAAAA
1 TTTGAAAA
14771997 TCAATATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (13 bp):
TTTGAAAACAAAG
Found at i:14772472 original size:21 final size:22
Alignment explanation
Indices: 14772463--14772521 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 22
14772453 ATACCCTTAT
*
14772463 AGGGGGTATCGATACTCATTCAA
1 AGGGGGTATCGATACACATTC-A
* * *
14772486 AGAGGGTATCGATACACGTTGA
1 AGGGGGTATCGATACACATTCA
14772508 A-GGGGTATCGATAC
1 AGGGGGTATCGATAC
14772522 CTAGTGCACA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 12 0.39
22 2 0.06
23 17 0.55
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (22 bp):
AGGGGGTATCGATACACATTCA
Found at i:14772496 original size:23 final size:21
Alignment explanation
Indices: 14772443--14772521 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
14772433 AAAACCTGAT
* *
14772443 GGGGATATCGATAC-CCTTATAG
1 GGGG-TATCGATACACATTA-AA
*
14772465 GGGGTATCGATACTCATTCAAA
1 GGGGTATCGATACACATT-AAA
* *
14772487 GAGGGTATCGATACACGTTGAA
1 G-GGGTATCGATACACATTAAA
14772509 GGGGTATCGATAC
1 GGGGTATCGATAC
14772522 CTAGTGCACA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
21 21 0.43
22 12 0.24
23 16 0.33
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (21 bp):
GGGGTATCGATACACATTAAA
Found at i:14776310 original size:22 final size:21
Alignment explanation
Indices: 14776268--14776307 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14776258 GAGATTATTT
*
14776268 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
14776289 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
14776308 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:14778682 original size:5 final size:5
Alignment explanation
Indices: 14778672--14778707 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
14778662 TTTGGATCTG
14778672 AAAAT AAAAT -AAAT AAAAT -AAAT -AAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
14778708 AGAAAGTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.41
5 17 0.59
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:14778687 original size:9 final size:9
Alignment explanation
Indices: 14778673--14778707 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
14778663 TTGGATCTGA
14778673 AAATAAAAT
1 AAATAAAAT
14778682 AAATAAAAT
1 AAATAAAAT
14778691 AAAT-AAAT
1 AAATAAAAT
14778699 AAAATAAAA
1 -AAATAAAA
14778708 AGAAAGTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.17
9 17 0.71
10 3 0.12
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:14778696 original size:13 final size:13
Alignment explanation
Indices: 14778672--14778706 Score: 61
Period size: 13 Copynumber: 2.6 Consensus size: 13
14778662 TTTGGATCTG
14778672 AAAATAAAATAAAT
1 AAAAT-AAATAAAT
14778686 AAAATAAATAAAT
1 AAAATAAATAAAT
14778699 AAAATAAA
1 AAAATAAA
14778707 AAGAAAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:14778915 original size:15 final size:15
Alignment explanation
Indices: 14778895--14778924 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14778885 ACTATATATT
14778895 ATATGTTTTCAAAAA
1 ATATGTTTTCAAAAA
14778910 ATATGTTTTCAAAAA
1 ATATGTTTTCAAAAA
14778925 CTATACCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
ATATGTTTTCAAAAA
Found at i:14778937 original size:39 final size:38
Alignment explanation
Indices: 14778857--14778930 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
14778847 TTTCAAAATA
*
14778857 ATATGTTTTCAAAAAATCATTTTAAAAAACTATATATT
1 ATATGTTTTCAAAAAATCATTTTAAAAAACTATACATT
*
14778895 ATATGTTTTCAAAAAAT-ATGTTTTCAAAAACTATAC
1 ATATGTTTTCAAAAAATCA--TTTTAAAAAACTATAC
14778931 CATATATCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 1 0.03
38 17 0.53
39 14 0.44
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (38 bp):
ATATGTTTTCAAAAAATCATTTTAAAAAACTATACATT
Found at i:14779995 original size:24 final size:23
Alignment explanation
Indices: 14779967--14780042 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 23
14779957 CAATTAACTC
14779967 TAAAACTATCAAATTATTTAATTT
1 TAAAACTAT-AAATTATTTAATTT
* *
14779991 CAAAAAT-TAATCATTATTTAATTT
1 TAAAACTATAA--ATTATTTAATTT
14780015 TAAAACTA-ATAATTATTTAATTT
1 TAAAACTATA-AATTATTTAATTT
14780038 TAAAA
1 TAAAA
14780043 TTTAAGGGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
22 2 0.05
23 18 0.41
24 23 0.52
25 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.45
Consensus pattern (23 bp):
TAAAACTATAAATTATTTAATTT
Found at i:14780024 original size:23 final size:23
Alignment explanation
Indices: 14779978--14780042 Score: 94
Period size: 23 Copynumber: 2.8 Consensus size: 23
14779968 AAAACTATCA
* *
14779978 AATTATTTAATTTCAAAAATTAAT
1 AATTATTTAATTT-TAAAACTAAT
*
14780002 CATTATTTAATTTTAAAACTAAT
1 AATTATTTAATTTTAAAACTAAT
14780025 AATTATTTAATTTTAAAA
1 AATTATTTAATTTTAAAA
14780043 TTTAAGGGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 25 0.68
24 12 0.32
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTATTTAATTTTAAAACTAAT
Found at i:14785120 original size:28 final size:28
Alignment explanation
Indices: 14785080--14785192 Score: 217
Period size: 28 Copynumber: 4.0 Consensus size: 28
14785070 TATCCAAACT
14785080 TACTCAAAAAGTTTCATCTAAATCCTAA
1 TACTCAAAAAGTTTCATCTAAATCCTAA
14785108 TACTCAAAAAGTTTCATCTAAATCCTAA
1 TACTCAAAAAGTTTCATCTAAATCCTAA
*
14785136 TACTCAAAAAGTTTCATCTAAATCCTTA
1 TACTCAAAAAGTTTCATCTAAATCCTAA
14785164 TACTCAAAAAGTTTCATCTAAATCCTAA
1 TACTCAAAAAGTTTCATCTAAATCCTAA
14785192 T
1 T
14785193 GCATGATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 83 1.00
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.34
Consensus pattern (28 bp):
TACTCAAAAAGTTTCATCTAAATCCTAA
Found at i:14805526 original size:7 final size:7
Alignment explanation
Indices: 14805516--14805554 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
14805506 ATTTTATGTT
*
14805516 TTAATCA
1 TTAATTA
14805523 TTAATTA
1 TTAATTA
14805530 TTAATTA
1 TTAATTA
*
14805537 TTATATGA
1 TTA-ATTA
14805545 TTAATTA
1 TTAATTA
14805552 TTA
1 TTA
14805555 TTAGTATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (7 bp):
TTAATTA
Found at i:14805549 original size:15 final size:15
Alignment explanation
Indices: 14805516--14805555 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
14805506 ATTTTATGTT
* *
14805516 TTAATCATTA-ATTA
1 TTAATTATTATATGA
14805530 TTAATTATTATATGA
1 TTAATTATTATATGA
14805545 TTAATTATTAT
1 TTAATTATTAT
14805556 TAGTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TTAATTATTATATGA
Found at i:14806654 original size:5 final size:5
Alignment explanation
Indices: 14806644--14806674 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
14806634 ATGTTGAGTC
14806644 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
14806675 AAATAAAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14809820 original size:3 final size:3
Alignment explanation
Indices: 14809802--14809865 Score: 83
Period size: 3 Copynumber: 21.0 Consensus size: 3
14809792 CATGTATATA
* *
14809802 CAT CTAT CAC CAT CAT CAT CAT CAT CAT CAT CAT AAT CAT CAT CAT
1 CAT C-AT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
* *
14809848 CAT CAT TAT CAT TAT CAT
1 CAT CAT CAT CAT CAT CAT
14809866 TATTAAGTAC
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.34, C:0.30, G:0.00, T:0.36
Consensus pattern (3 bp):
CAT
Found at i:14810088 original size:23 final size:23
Alignment explanation
Indices: 14810021--14810122 Score: 96
Period size: 23 Copynumber: 4.4 Consensus size: 23
14810011 CACCAAAGTG
*
14810021 CCACATAGAAATGTCCCGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
* * * * * *
14810044 CCCCATAGTATTGTTCCAAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
*
14810067 CCACGTAGAAATGTCCTGAAGGA
1 CCACGTAGAAATGTCCCGAAGGA
** * *
14810090 TAACGTAGAATTGTCCCGAAAGA
1 CCACGTAGAAATGTCCCGAAGGA
14810113 CCACGTAGAA
1 CCACGTAGAA
14810123 CCCTAGACTC
Statistics
Matches: 60, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.19
Consensus pattern (23 bp):
CCACGTAGAAATGTCCCGAAGGA
Found at i:14810103 original size:46 final size:46
Alignment explanation
Indices: 14810013--14810122 Score: 116
Period size: 46 Copynumber: 2.4 Consensus size: 46
14810003 AGAAATTGCA
* ** * *
14810013 CCAAAGTG-CCACATAGAAATGTCCCGAAGGACCCCATAGTATTGTT
1 CCAAAG-GACCACGTAGAAATGTCCCGAAGGACAACATAGAATTGTC
* * *
14810059 CCAAAGGACCACGTAGAAATGTCCTGAAGGATAACGTAGAATTGTC
1 CCAAAGGACCACGTAGAAATGTCCCGAAGGACAACATAGAATTGTC
14810105 CCGAAA-GACCACGTAGAA
1 CC-AAAGGACCACGTAGAA
14810123 CCCTAGACTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.02
46 50 0.93
47 3 0.06
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (46 bp):
CCAAAGGACCACGTAGAAATGTCCCGAAGGACAACATAGAATTGTC
Found at i:14810265 original size:45 final size:43
Alignment explanation
Indices: 14810211--14810311 Score: 130
Period size: 45 Copynumber: 2.3 Consensus size: 43
14810201 GATAGCGTGT
*
14810211 ATCACATAGGACATTGTCACATAGCTTATATCACATTTTCATATA
1 ATCACATAGGA-ATAG-CACATAGCTTATATCACATTTTCATATA
* * *
14810256 GTCACATAGGTTAATAGCACATAGCTTATATCACTTTTTCATGTA
1 ATCACATAGG--AATAGCACATAGCTTATATCACATTTTCATATA
14810301 ATCACATAGGA
1 ATCACATAGGA
14810312 TGAAATGTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.02
45 44 0.90
46 3 0.06
47 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (43 bp):
ATCACATAGGAATAGCACATAGCTTATATCACATTTTCATATA
Found at i:14813283 original size:23 final size:23
Alignment explanation
Indices: 14813251--14813303 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
14813241 TATTTACATT
* *
14813251 ATATGATTTATTTTATATCATCG
1 ATATGTTTTACTTTATATCATCG
* *
14813274 ATATGTTTTACTTTGTATCATTG
1 ATATGTTTTACTTTATATCATCG
14813297 ATTATGT
1 A-TATGT
14813304 CTCACTAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.26, C:0.08, G:0.11, T:0.55
Consensus pattern (23 bp):
ATATGTTTTACTTTATATCATCG
Found at i:14813820 original size:24 final size:24
Alignment explanation
Indices: 14813788--14813866 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 24
14813778 ACCATGTTCG
14813788 GTATCGATACTACTATGCATAGTA
1 GTATCGATACTACTATGCATAGTA
* * *
14813812 GTATCGATACTCCT-TGGA-CG--
1 GTATCGATACTACTATGCATAGTA
* * *
14813832 GTATTGATACCACTATACATAGTA
1 GTATCGATACTACTATGCATAGTA
14813856 GTATCGATACT
1 GTATCGATACT
14813867 CCTTGAAGAG
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
20 11 0.28
21 2 0.05
22 2 0.05
23 3 0.08
24 22 0.55
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (24 bp):
GTATCGATACTACTATGCATAGTA
Found at i:14813841 original size:44 final size:44
Alignment explanation
Indices: 14813786--14813871 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
14813776 ATACCATGTT
* *
14813786 CGGTATCGATACTACTATGCATAGTAGTATCGATACTCCTTGGA
1 CGGTATCGATACCACTATACATAGTAGTATCGATACTCCTTGGA
*
14813830 CGGTATTGATACCACTATACATAGTAGTATCGATACTCCTTG
1 CGGTATCGATACCACTATACATAGTAGTATCGATACTCCTTG
14813872 AAGAGTATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
CGGTATCGATACCACTATACATAGTAGTATCGATACTCCTTGGA
Found at i:14813886 original size:44 final size:44
Alignment explanation
Indices: 14813787--14813886 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
14813777 TACCATGTTC
* * * *
14813787 GGTATCGATACTACTATGCATAGTAGTATCGATACTCCTTGGAC
1 GGTATCTATACCACTATACATAGTAGTATCGATACTCCTTGGAA
14813831 GGTAT-TGATACCACTATACATAGTAGTATCGATACTCCTT-GAA
1 GGTATCT-ATACCACTATACATAGTAGTATCGATACTCCTTGGAA
14813874 GAGTATCTATACC
1 G-GTATCTATACC
14813887 GTTGGGTTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
43 3 0.06
44 45 0.92
45 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (44 bp):
GGTATCTATACCACTATACATAGTAGTATCGATACTCCTTGGAA
Found at i:14819662 original size:22 final size:21
Alignment explanation
Indices: 14819628--14819668 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14819618 ATACTGGTCA
14819628 TCTAGTACCGATACTACTATT
1 TCTAGTACCGATACTACTATT
*
14819649 TCTAGGTATCGATACTACTA
1 TCTA-GTACCGATACTACTA
14819669 GCATAGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (21 bp):
TCTAGTACCGATACTACTATT
Found at i:14821722 original size:18 final size:18
Alignment explanation
Indices: 14821677--14821715 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14821667 CACTTTCTGG
14821677 ATTTGGTTG--TTTGAAT
1 ATTTGGTTGTTTTTGAAT
*
14821693 ATTTGGTTGTTTTTGGAT
1 ATTTGGTTGTTTTTGAAT
14821711 ATTTG
1 ATTTG
14821716 TGTGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
18 11 0.55
ACGTcount: A:0.15, C:0.00, G:0.26, T:0.59
Consensus pattern (18 bp):
ATTTGGTTGTTTTTGAAT
Found at i:14822151 original size:18 final size:17
Alignment explanation
Indices: 14822123--14822165 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 17
14822113 TTAATGAATT
14822123 TTAAGATTTTATATTCGA
1 TTAA-ATTTTATATTCGA
14822141 TTCAAATTTTATATTCGA
1 TT-AAATTTTATATTCGA
14822159 TTAAATT
1 TTAAATT
14822166 ATTCAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.21
18 17 0.71
19 2 0.08
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (17 bp):
TTAAATTTTATATTCGA
Found at i:14822532 original size:24 final size:24
Alignment explanation
Indices: 14822499--14822577 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
14822489 TACCATGTTC
*
14822499 AGTATTGATACTACTATGCATAGT
1 AGTATCGATACTACTATGCATAGT
* * *
14822523 ACTATCGATACT-CT-TGGA-CG-
1 AGTATCGATACTACTATGCATAGT
*
14822543 -GTATCGATACTACTATACATAGT
1 AGTATCGATACTACTATGCATAGT
14822566 AGTATCGATACT
1 AGTATCGATACT
14822578 CCTTGAAGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
19 10 0.24
20 2 0.05
21 3 0.07
22 4 0.10
23 2 0.05
24 21 0.50
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (24 bp):
AGTATCGATACTACTATGCATAGT
Found at i:14822552 original size:43 final size:43
Alignment explanation
Indices: 14822500--14822595 Score: 131
Period size: 43 Copynumber: 2.2 Consensus size: 43
14822490 ACCATGTTCA
* * *
14822500 GTATTGATACTACTATGCATAGTACTATCGATACT-CTTGGACG
1 GTATCGATACTACTATACATAGTACTATCGATACTCCTT-GAAG
*
14822543 GTATCGATACTACTATACATAGTAGTATCGATACTCCTTGAAG
1 GTATCGATACTACTATACATAGTACTATCGATACTCCTTGAAG
14822586 GATATCGATA
1 G-TATCGATA
14822596 TTGTTAGGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 36 0.77
44 11 0.23
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (43 bp):
GTATCGATACTACTATACATAGTACTATCGATACTCCTTGAAG
Found at i:14824814 original size:13 final size:14
Alignment explanation
Indices: 14824796--14824825 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14824786 ATTTTCTTAT
14824796 AGAAGAAAA-AGAA
1 AGAAGAAAATAGAA
14824809 AGAAGAAAATAGAA
1 AGAAGAAAATAGAA
14824823 AGA
1 AGA
14824826 TAAAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.03
Consensus pattern (14 bp):
AGAAGAAAATAGAA
Found at i:14826840 original size:13 final size:13
Alignment explanation
Indices: 14826822--14826867 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
14826812 GTCATTAATC
*
14826822 TATGACGCGCATT
1 TATGACGCACATT
**
14826835 TATGACAAACATT
1 TATGACGCACATT
*
14826848 TATGACGCATATT
1 TATGACGCACATT
14826861 TATGACG
1 TATGACG
14826868 TTCATTGAGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATGACGCACATT
Done.