Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009634.1 Hibiscus syriacus cultivar Beakdansim tig00117034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17174986
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 72 of 78
Found at i:14827036 original size:2 final size:2
Alignment explanation
Indices: 14827029--14827103 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
14827019 TTTCGTAAAT
14827029 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14827071 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14827104 TTAGATTGAC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14840853 original size:3 final size:3
Alignment explanation
Indices: 14840845--14840900 Score: 76
Period size: 3 Copynumber: 18.0 Consensus size: 3
14840835 AAATTTAAAT
* *
14840845 TTA TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA TTA TTA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
14840891 TTA TTTA TTA
1 TTA -TTA TTA
14840901 AATATTACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
3 41 0.87
4 6 0.13
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:14847747 original size:11 final size:10
Alignment explanation
Indices: 14847716--14847756 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
14847706 CTCATCCAGC
14847716 AAAGAAAGAAGA
1 AAAGAAA-AA-A
14847728 AAAGAAAAAA
1 AAAGAAAAAA
*
14847738 AAAGGAAAAA
1 AAAGAAAAAA
14847748 AAAGAAAAA
1 AAAGAAAAA
14847757 GGAAAATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 2 0.07
12 7 0.26
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:14847755 original size:16 final size:17
Alignment explanation
Indices: 14847716--14847762 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
14847706 CTCATCCAGC
14847716 AAAGAAAGAA-GAAAAGA
1 AAAGAAA-AAGGAAAAGA
14847733 AAA-AAAAAGGAAAA-A
1 AAAGAAAAAGGAAAAGA
14847748 AAAGAAAAAGGAAAA
1 AAAGAAAAAGGAAAA
14847763 TTGAATCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.21
16 19 0.68
17 3 0.11
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAGGAAAAGA
Found at i:14850139 original size:93 final size:93
Alignment explanation
Indices: 14849854--14850314 Score: 746
Period size: 93 Copynumber: 5.0 Consensus size: 93
14849844 AGAAGACCCA
*
14849854 ATAGTATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
14849919 TCATTGAATTTGGAAGATGAATGTGCTC
66 TCATTGAATTTGGAAGATGAATGTGCTC
14849947 ATAGCATCTTCTGGAAGTGTTCTTTGAG---T-T-ATCTGGTTTGGTATGAAACCACAGAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
14850007 TCATTGAATTTGGAAGATGAATGTGCTC
66 TCATTGAATTTGGAAGATGAATGTGCTC
*
14850035 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATATGGTTTGGTATGAAACCACAGAACCAA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
14850100 TCATTGAATTTGGAAGATGAATGTGCTC
66 TCATTGAATTTGGAAGATGAATGTGCTC
*
14850128 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAA-CAG
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
14850192 TCA-TGAATTTGGAAGATGAATGTGCTC
66 TCATTGAATTTGGAAGATGAATGTGCTC
* * *
14850219 ATAGCAT-TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATG-AACTC-CAAAATCA
1 ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAAC-CACAGAACCA
* *
14850281 ATCATT-AGATTTGAAAGATGAATTTTGCTC
65 ATCATTGA-ATTTGGAAGATGAA-TGTGCTC
14850311 ATAG
1 ATAG
14850315 TAGAAATAAG
Statistics
Matches: 349, Mismatches: 9, Indels: 21
0.92 0.02 0.06
Matches are distributed among these distances:
88 86 0.25
89 8 0.02
90 49 0.14
91 46 0.13
92 16 0.05
93 144 0.41
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (93 bp):
ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCACAGAACCAA
TCATTGAATTTGGAAGATGAATGTGCTC
Found at i:14850442 original size:115 final size:114
Alignment explanation
Indices: 14850219--14850429 Score: 278
Period size: 115 Copynumber: 1.8 Consensus size: 114
14850209 GAATGTGCTC
* * * *
14850219 ATAGCATTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACTCCAAAATCAATC
1 ATAGCATTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAATC
* ** * *
14850284 ATTAGATTTGAAAGATGAATTTTGCTCATAGTAGAAATAAGAAGACCCA
66 ATTAGAATTGAAAGATGAATCATGATCATACTAGAAATAAGAAGACCCA
* * *
14850333 ATAGCATCTTCTGGAAGTGTTTTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAGAACCGAT
1 ATAGCAT-TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAAT
*
14850398 CATTGGAATTGAAAGATGAACTGCATGATCAT
65 CATTAGAATTGAAAGATGAA-T-CATGATCAT
14850430 CTTCATTAAG
Statistics
Matches: 82, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
114 7 0.09
115 68 0.83
116 1 0.01
117 6 0.07
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (114 bp):
ATAGCATTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAATC
ATTAGAATTGAAAGATGAATCATGATCATACTAGAAATAAGAAGACCCA
Found at i:14852984 original size:21 final size:22
Alignment explanation
Indices: 14852959--14853008 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
14852949 TACACTCTTC
*
14852959 AAGATGATAGATTCTCTTTT-A
1 AAGATGACAGATTCTCTTTTCA
14852980 AAGATGACAGATTCTCTTTTCA
1 AAGATGACAGATTCTCTTTTCA
14853002 AAGATGA
1 AAGATGA
14853009 AAACTTTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 19 0.70
22 8 0.30
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (22 bp):
AAGATGACAGATTCTCTTTTCA
Found at i:14854211 original size:614 final size:607
Alignment explanation
Indices: 14853052--14854277 Score: 2266
Period size: 614 Copynumber: 2.0 Consensus size: 607
14853042 ATAAAGTTGG
14853052 TTTATCCAAGACAAAATGGGGCATCAAGGTCATAGTTCTGACTATGACATGAGTTCCACAAATGA
1 TTTATCCAAGACAAAATGGGGCATCAAGGTCATAGTTCTGACTATGACATGAGTTCCACAAATGA
14853117 AACAATTCTTCTAAGACTTTCATGAAGCAAAGAACAGCAAAGATATAAGTTGATCAGATGATTCT
66 AACAATTCTTCTAAGACTTTCATGAAGCAAAGAACAGCAAAGATATAAGTTGATCAGATGATTCT
14853182 GCATGAATGCAAGCTGATAGCATAAGTTGCGATACTGATATCCAGAGGTAACCTGGCAATAAATG
131 GCATGAATGCAAGCTGATAGCATAAGTTGCGATACTGATATCCAGAGGTAACCTGGCAATAAATG
14853247 ATGAACTGAAGGAAGATCGAGTTCACCACTTTGAAGTCAAATGAAGATGCATCAACATACATGCA
196 ATGAACTGAAGGAAGATCGAGTTCACCACTTTGAAGTCAAATGAAGATGCATCAACATACATGCA
14853312 TTCATAAGAACATCATTTGCACAATAGACAATGCATTACATTGATACATCTGAGTGCATTCAAAA
261 TTCATAAGAACATCATTTGCACAATAGACAATGCATTACATTGATA-ATCTGAGTGCATTCAAAA
14853377 ATGAAGTTTTACGATTTCGGAAGAACAAGAAGATTCATGGTAAGAAATACCTTACAAGAAGTATT
325 ATGAAGTTTTACGATTTCGGAAGAACAAGAAGATTCATGGTAAGAAATACCTTACAAGAAGTATT
14853442 CAAAACCGTAAATACAGGAATCACGCGAACATCTGAAGAATAGATGGATGTAACCACAAAAATGA
390 CAAAACCGTAAATACAGGAATCACGCGAACATCTGAAGAATAGATGGATGTAACCACAAAAATGA
14853507 GCATTATTTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAATAATGAGAAAACG
455 GCATTATTTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAATAATGAGAAAACG
14853572 ATTTCCATGTTTCTCATCAATCTTTTCTAAAAATGAAATTGTTGAAAAGT-AAAACGATTTCCTT
520 ATTTCCATGTTTCTCATCAATCTTTTCTAAAAATGAAATTGTTGAAAAGTAAAAACGATTTCCTT
14853636 AGTTTTTTTACTT-GTAAACTAT
585 AGTTTTTTTACTTAGTAAACTAT
14853658 TTTATCCAAGACAAAATGGGGCATCAAGGTCATAGTTCTGACTATGACATGAGTTCCACAAATGA
1 TTTATCCAAGACAAAATGGGGCATCAAGGTCATAGTTCTGACTATGACATGAGTTCCACAAATGA
14853723 AACAATTCTTCTAAGACTTTCATGAAGCAAAGAAGACAGCAAAGATATAAGTTGATCAGATGATT
66 AACAATTCTTCTAAGACTTTCATGAAGCAAAG-A-ACAGCAAAGATATAAGTTGATCAGATGATT
14853788 CTGCATGAATGCAAGCTTGATAGCATAAGTTGCGATACTGATATCCAGAGGTAACCCTGGCAATA
129 CTGCATGAATGCAAGC-TGATAGCATAAGTTGCGATACTGATATCCAGAGGTAA-CCTGGCAATA
14853853 AATGATGAACTGAAGGAAGATCGAGTTCACCACTTTGAAGTCAAATGAAGATTGCATCAACATAC
192 AATGATGAACTGAAGGAAGATCGAGTTCACCACTTTGAAGTCAAATGAAGA-TGCATCAACATAC
14853918 ATGCATTCATAAGAACATCATTTGCACAATAGACAATGCATTACATTGAT-ATCTG-GTGCATTC
256 ATGCATTCATAAGAACATCATTTGCACAATAGACAATGCATTACATTGATAATCTGAGTGCATTC
14853981 AAAAATGAAGTTTTACAGATCTTCGGAAGAACAAGAAGATTCATGGTAAGAAATACCTTACAAGA
321 AAAAATGAAGTTTTAC-GAT-TTCGGAAGAACAAGAAGATTCATGGTAAGAAATACCTTAC---A
14854046 AGAAGGTATTCAAAACCGTAAATACAGGAATCACGCGAACATCTGAAGAATAGATGGATGTAATC
381 AGAA-GTATTCAAAACCGTAAATACAGGAATCACGCGAACATCTGAAGAATAGATGGATGTAA-C
14854111 CACAAAAATGAGCA-TATTTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAATA
444 CACAAAAATGAGCATTATTTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAATA
14854175 ATGAGAAAACGATTTCCA-GTTTCTCATTCAATCTTTTCTAAAAATGAAATTGTTGAAAAGTAAG
509 ATGAGAAAACGATTTCCATGTTTCTCA-TCAATCTTTTCTAAAAATGAAATTGTTGAAAAGT-A-
14854239 AAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTAT
571 AAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTAT
14854276 TT
1 TT
14854278 CCCTCATCTG
Statistics
Matches: 603, Mismatches: 0, Indels: 22
0.96 0.00 0.04
Matches are distributed among these distances:
606 97 0.16
607 1 0.00
608 70 0.12
609 45 0.07
610 101 0.17
611 63 0.10
613 13 0.02
614 160 0.27
615 15 0.02
617 27 0.04
618 11 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (607 bp):
TTTATCCAAGACAAAATGGGGCATCAAGGTCATAGTTCTGACTATGACATGAGTTCCACAAATGA
AACAATTCTTCTAAGACTTTCATGAAGCAAAGAACAGCAAAGATATAAGTTGATCAGATGATTCT
GCATGAATGCAAGCTGATAGCATAAGTTGCGATACTGATATCCAGAGGTAACCTGGCAATAAATG
ATGAACTGAAGGAAGATCGAGTTCACCACTTTGAAGTCAAATGAAGATGCATCAACATACATGCA
TTCATAAGAACATCATTTGCACAATAGACAATGCATTACATTGATAATCTGAGTGCATTCAAAAA
TGAAGTTTTACGATTTCGGAAGAACAAGAAGATTCATGGTAAGAAATACCTTACAAGAAGTATTC
AAAACCGTAAATACAGGAATCACGCGAACATCTGAAGAATAGATGGATGTAACCACAAAAATGAG
CATTATTTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAATAATGAGAAAACGA
TTTCCATGTTTCTCATCAATCTTTTCTAAAAATGAAATTGTTGAAAAGTAAAAACGATTTCCTTA
GTTTTTTTACTTAGTAAACTAT
Found at i:14854381 original size:76 final size:76
Alignment explanation
Indices: 14854281--14854770 Score: 869
Period size: 76 Copynumber: 6.5 Consensus size: 76
14854271 ACTATTTCCC
*
14854281 TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
14854346 AAGCCTTCGGG
66 AAGCCTTAGGG
*
14854357 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCTAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
14854422 AAGCCTTCGGG
66 AAGCCTTAGGG
14854433 TCATCTGTAAGT-CTTCAGTGCATGATGTTTCCAAAAAGCC-TCGGGAGCTTTTTG-TGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
14854495 AAGCCTTAGGG
66 AAGCCTTAGGG
*
14854506 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTGTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
14854571 AAGCCTTAGGG
66 AAGCCTTAGGG
* *
14854582 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAAGTCTTCGGGATCTTTTTGATGTTTTC
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAAGCCTTCGGGAGCTTTTTGATGTTTTC
14854647 AAAGCCTTAGGG
65 AAAGCCTTAGGG
14854659 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
14854724 AAGCCTTAGGG
66 AAGCCTTAGGG
* *
14854735 TCATCTGTAAGTCCTACAGTGCATGAGGTTTCCAAA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
14854771 CATTTTCATC
Statistics
Matches: 398, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
73 30 0.08
74 42 0.11
75 41 0.10
76 212 0.53
77 73 0.18
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAGCCTTAGGG
Found at i:14854693 original size:153 final size:151
Alignment explanation
Indices: 14854281--14854770 Score: 858
Period size: 153 Copynumber: 3.2 Consensus size: 151
14854271 ACTATTTCCC
14854281 TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAG-CTTCGGGAGCTTTTTGATGTTTTCA
* *
14854346 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCTAAAAAGCCTTCGGGAGCTTTT
65 AAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
*
14854411 TGATGTTTTCAAAGCCTTCGGG
130 TGATGTTTTCAAAGCCTTAGGG
* *
14854433 TCATCTGTAAGT-CTTCAGTGCATGATGTTTCCAAAAAGCCTCGGGAGCTTTTTG-TGTTTTCAA
1 TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCTTCGGGAGCTTTTTGATGTTTTCAA
14854496 AGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
66 AGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
*
14854561 GATGTGTTCAAAGCCTTAGGG
131 GATGTTTTCAAAGCCTTAGGG
* *
14854582 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAAGTCTTCGGGATCTTTTTGATGTTTTC
1 TCATCTGTAAGTCCTACAGTGCATGATGTTTCC-AAAAAG-CTTCGGGAGCTTTTTGATGTTTTC
14854647 AAAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
64 AAAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTT
14854712 TTGATGTTTTCAAAGCCTTAGGG
129 TTGATGTTTTCAAAGCCTTAGGG
*
14854735 TCATCTGTAAGTCCTACAGTGCATGAGGTTTCCAAA
1 TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAA
14854771 CATTTTCATC
Statistics
Matches: 323, Mismatches: 11, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
149 103 0.32
150 35 0.11
151 31 0.10
152 29 0.09
153 125 0.39
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (151 bp):
TCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTT
GATGTTTTCAAAGCCTTAGGG
Found at i:14855061 original size:19 final size:19
Alignment explanation
Indices: 14855034--14855077 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14855024 TCTAAACCCT
*
14855034 AGCTCCAGTCACCGCCTCA
1 AGCTTCAGTCACCGCCTCA
*
14855053 AGCTTCAGTCGCCGCCTCA
1 AGCTTCAGTCACCGCCTCA
14855072 AGCTTC
1 AGCTTC
14855078 CAGAAGCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.18, C:0.43, G:0.18, T:0.20
Consensus pattern (19 bp):
AGCTTCAGTCACCGCCTCA
Found at i:14855784 original size:18 final size:18
Alignment explanation
Indices: 14855763--14855800 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
14855753 TATGAATTTT
14855763 TTTATTCATATTTTAATA
1 TTTATTCATATTTTAATA
* *
14855781 TTTATTTATTTTTTAATA
1 TTTATTCATATTTTAATA
14855799 TT
1 TT
14855801 AAGATAGGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATTCATATTTTAATA
Found at i:14857799 original size:6 final size:6
Alignment explanation
Indices: 14857783--14857823 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
14857773 TTTGGCGAAA
*
14857783 CAGACTT CAGATT CAGACT CAGACT CAGACT CAGACT CAGA
1 CAGAC-T CAGACT CAGACT CAGACT CAGACT CAGACT CAGA
14857824 ACGTTGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 28 0.88
7 4 0.12
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (6 bp):
CAGACT
Found at i:14857894 original size:20 final size:22
Alignment explanation
Indices: 14857868--14857926 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 22
14857858 TTTAACTTTT
14857868 TGGTCAAAGTCAACGATCAA-C
1 TGGTCAAAGTCAACGATCAACC
* *
14857889 -GGTCAAAGTCAATGGTCAACTC
1 TGGTCAAAGTCAACGATCAAC-C
14857911 TGGTCAAAGTCAACGA
1 TGGTCAAAGTCAACGA
14857927 CCAGGTCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 17 0.55
22 1 0.03
23 13 0.42
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
TGGTCAAAGTCAACGATCAACC
Found at i:14858557 original size:3 final size:3
Alignment explanation
Indices: 14858549--14858574 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14858539 AAAAATTTAT
14858549 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14858575 TTAAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14865532 original size:18 final size:18
Alignment explanation
Indices: 14865509--14865543 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14865499 TGATCGGAGC
14865509 GAGGTGGCGGTTCCAAAG
1 GAGGTGGCGGTTCCAAAG
14865527 GAGGTGGCGGTTCCAAA
1 GAGGTGGCGGTTCCAAA
14865544 ATGTGGCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.43, T:0.17
Consensus pattern (18 bp):
GAGGTGGCGGTTCCAAAG
Found at i:14865980 original size:27 final size:27
Alignment explanation
Indices: 14865942--14865995 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
14865932 AGACTAATAT
14865942 ACCCCTAAATAGATATAATTATAAAAA
1 ACCCCTAAATAGATATAATTATAAAAA
*
14865969 ACCCCTAAATAGATATAATTGTAAAAA
1 ACCCCTAAATAGATATAATTATAAAAA
14865996 CCCTTATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.26
Consensus pattern (27 bp):
ACCCCTAAATAGATATAATTATAAAAA
Found at i:14870159 original size:26 final size:26
Alignment explanation
Indices: 14870110--14870160 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14870100 ATTCTTATTT
* *
14870110 TAATTTAAAAATAACACTTTAAAAAA
1 TAATTTAAAAATAACACATAAAAAAA
* *
14870136 TAATTTAAAGATAACAGATAAAAAA
1 TAATTTAAAAATAACACATAAAAAA
14870161 GAAATTAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (26 bp):
TAATTTAAAAATAACACATAAAAAAA
Found at i:14870166 original size:26 final size:26
Alignment explanation
Indices: 14870111--14870166 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
14870101 TTCTTATTTT
** *
14870111 AATTTAAAAATAACACTTTAAAAAAT
1 AATTTAAAAATAACACGATAAAAAAA
*
14870137 AATTTAAAGATAACA-GATAAAAAAGA
1 AATTTAAAAATAACACGATAAAAAA-A
14870163 AATT
1 AATT
14870167 AAGATCTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (26 bp):
AATTTAAAAATAACACGATAAAAAAA
Found at i:14871013 original size:2 final size:2
Alignment explanation
Indices: 14871006--14871070 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
14870996 TATGTATACT
14871006 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14871048 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
14871071 CTTATTATAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14871015 original size:12 final size:11
Alignment explanation
Indices: 14870981--14871070 Score: 105
Period size: 12 Copynumber: 8.1 Consensus size: 11
14870971 TTATTTTTAT
*
14870981 TTATATATAAA
1 TTATATATATA
*
14870992 CTTATATGTATA
1 -TTATATATATA
14871004 CTTATATATATA
1 -TTATATATATA
14871016 -TATATATATA
1 TTATATATATA
14871026 -TATATATATA
1 TTATATATATA
14871036 -TATATATATA
1 TTATATATATA
14871046 TATATATATATA
1 T-TATATATATA
14871058 TATATATATATA
1 T-TATATATATA
14871070 T
1 T
14871071 CTTATTATAC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
10 30 0.41
12 43 0.59
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (11 bp):
TTATATATATA
Found at i:14873070 original size:17 final size:18
Alignment explanation
Indices: 14873038--14873083 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
14873028 TTCCAAATTC
*
14873038 TAGGTTTTATGTGCACAT
1 TAGGGTTTATGTGCACAT
14873056 TAGGGTTTA-GTGCACAT
1 TAGGGTTTATGTGCACAT
14873073 TAGGGTTTATG
1 TAGGGTTTATG
14873084 GAATTGATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (18 bp):
TAGGGTTTATGTGCACAT
Found at i:14875052 original size:39 final size:39
Alignment explanation
Indices: 14874996--14875167 Score: 200
Period size: 39 Copynumber: 4.4 Consensus size: 39
14874986 ATCGATTAAA
* * *
14874996 CACTTCGGTGCAAATGGTGGGCATGACCTTATGTGTATG
1 CACTTCGGTGCATATGGTGGGCACGACCTTATGTGTAAG
* *
14875035 CACTTTGGTGCATATGGTGGTCACGACCTTATGTGTAATG
1 CACTTCGGTGCATATGGTGGGCACGACCTTATGTGTAA-G
* * * * *
14875075 CAATTCGGTTCATATGGTGGGAAAGATCTTATGTGTAAG
1 CACTTCGGTGCATATGGTGGGCACGACCTTATGTGTAAG
** * *
14875114 CACTTTAGTTCATATGGTGGACACGACCTTATGTGTAAG
1 CACTTCGGTGCATATGGTGGGCACGACCTTATGTGTAAG
*
14875153 CACTACGGTGCATAT
1 CACTTCGGTGCATAT
14875168 ATAATTAACT
Statistics
Matches: 109, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
39 77 0.71
40 32 0.29
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (39 bp):
CACTTCGGTGCATATGGTGGGCACGACCTTATGTGTAAG
Found at i:14875130 original size:79 final size:79
Alignment explanation
Indices: 14874999--14875164 Score: 226
Period size: 79 Copynumber: 2.1 Consensus size: 79
14874989 GATTAAACAC
* * * * *
14874999 TTCGGTGCAAATGGTGGGCATGACCTTATGTGTATGCACTTTGGTGCATATGGTGGTCACGACCT
1 TTCGGTGCAAATGGTGGGAAAGACCTTATGTGTAAGCACTTTAGTGCATATGGTGGACACGACCT
14875064 TATGTGTAATGCAA
66 TATGTGTAATGCAA
* * * *
14875078 TTCGGTTCATATGGTGGGAAAGATCTTATGTGTAAGCACTTTAGTTCATATGGTGGACACGACCT
1 TTCGGTGCAAATGGTGGGAAAGACCTTATGTGTAAGCACTTTAGTGCATATGGTGGACACGACCT
*
14875143 TATGTGTAA-GCAC
66 TATGTGTAATGCAA
*
14875156 TACGGTGCA
1 TTCGGTGCA
14875165 TATATAATTA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 10 0.13
79 65 0.87
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (79 bp):
TTCGGTGCAAATGGTGGGAAAGACCTTATGTGTAAGCACTTTAGTGCATATGGTGGACACGACCT
TATGTGTAATGCAA
Found at i:14879057 original size:17 final size:17
Alignment explanation
Indices: 14879006--14879077 Score: 65
Period size: 17 Copynumber: 4.2 Consensus size: 17
14878996 AATTAAGAGT
* *
14879006 TAGTATAATAAATGAAC
1 TAGTTTAATTAATGAAC
* * *
14879023 TAGTTTGATGAATAAAC
1 TAGTTTAATTAATGAAC
14879040 TAGTTTAATTAATGAAC
1 TAGTTTAATTAATGAAC
*
14879057 TAACTTT-ATTCAATGAAC
1 T-AGTTTAATT-AATGAAC
14879075 TAG
1 TAG
14879078 ATGCATGAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
17 32 0.73
18 12 0.27
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.36
Consensus pattern (17 bp):
TAGTTTAATTAATGAAC
Found at i:14881478 original size:17 final size:16
Alignment explanation
Indices: 14881458--14881532 Score: 51
Period size: 17 Copynumber: 4.4 Consensus size: 16
14881448 TAGTCTAATA
14881458 AATGAACTAGTTTGATG
1 AATGAACTAGTTT-ATG
* *
14881475 AATGAACTATTTTAATT
1 AATGAACTAGTTT-ATG
* * *
14881492 ATTGAACTAACTTTATTC
1 AATGAACT-AGTTTA-TG
*
14881510 AATGAACTAGATTCATG
1 AATGAACTAG-TTTATG
14881527 AATGAA
1 AATGAA
14881533 GTAGCTTACT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
17 30 0.67
18 15 0.33
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.37
Consensus pattern (16 bp):
AATGAACTAGTTTATG
Found at i:14881636 original size:37 final size:37
Alignment explanation
Indices: 14881595--14881680 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
14881585 ACTAGATGCT
14881595 TTAAATGCAATGCATGCTTAAATAAACAACACACTTA
1 TTAAATGCAATGCATGCTTAAATAAACAACACACTTA
14881632 TTAAATGCAATGCATGCTTAAATAAACAACACACTTA
1 TTAAATGCAATGCATGCTTAAATAAACAACACACTTA
*
14881669 TTAAAGGCAATG
1 TTAAATGCAATG
14881681 AATGTCATGC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.27
Consensus pattern (37 bp):
TTAAATGCAATGCATGCTTAAATAAACAACACACTTA
Found at i:14881637 original size:20 final size:20
Alignment explanation
Indices: 14881612--14881673 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
14881602 CAATGCATGC
14881612 TTAAATAAACAACACACTTA
1 TTAAATAAACAACACACTTA
* ** **
14881632 TTAAAT--GCAATGCA-TGC
1 TTAAATAAACAACACACTTA
14881649 TTAAATAAACAACACACTTA
1 TTAAATAAACAACACACTTA
14881669 TTAAA
1 TTAAA
14881674 GGCAATGAAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
17 7 0.24
18 5 0.17
19 5 0.17
20 12 0.41
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27
Consensus pattern (20 bp):
TTAAATAAACAACACACTTA
Found at i:14884317 original size:31 final size:31
Alignment explanation
Indices: 14884282--14884354 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
14884272 TAAGGGAGTA
14884282 TCTTGGGGCC-TGAGAGCCTACCCAAGAAAGT
1 TCTTGGGGCCAT-AGAGCCTACCCAAGAAAGT
*
14884313 TCTTGGGGCCATAGGGCCTACCCAAGAAAGT
1 TCTTGGGGCCATAGAGCCTACCCAAGAAAGT
* *
14884344 TATCGGGGCCA
1 TCTTGGGGCCA
14884355 CAACGCTTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 37 0.97
32 1 0.03
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (31 bp):
TCTTGGGGCCATAGAGCCTACCCAAGAAAGT
Found at i:14888108 original size:32 final size:30
Alignment explanation
Indices: 14888068--14888207 Score: 117
Period size: 32 Copynumber: 4.6 Consensus size: 30
14888058 TACCACTTAT
14888068 AATACCAACAAACTTAAACCATAATAATTTC
1 AATACCAACAAACTTAAA-CATAATAATTTC
* *
14888099 AATATCCAACAAAGTTGAAACATTATAATTTC
1 AATA-CCAACAAACTT-AAACATAATAATTTC
* * * *
14888131 AATGTCCAAAAAAATTAAACATAA-CATTAT-
1 AAT-ACCAACAAACTTAAACATAATAATT-TC
* *
14888161 AATACCAACAAACCTAAA-ATAATAATGTC
1 AATACCAACAAACTTAAACATAATAATTTC
*
14888190 AACACCCAACAAA-TTAAA
1 AATA-CCAACAAACTTAAA
14888208 TTTCACTGTC
Statistics
Matches: 87, Mismatches: 15, Indels: 16
0.74 0.13 0.14
Matches are distributed among these distances:
28 5 0.06
29 20 0.23
30 14 0.16
31 12 0.14
32 33 0.38
33 3 0.03
ACGTcount: A:0.54, C:0.19, G:0.03, T:0.24
Consensus pattern (30 bp):
AATACCAACAAACTTAAACATAATAATTTC
Found at i:14898852 original size:24 final size:24
Alignment explanation
Indices: 14898825--14898877 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
14898815 TTGAAAACAT
*
14898825 ATATATAATATATAGTTTTTGAAA
1 ATATATAATATATAATTTTTGAAA
14898849 ATATATAATATATAATTTTTGAAA
1 ATATATAATATATAATTTTTGAAA
14898873 A-ATAT
1 ATATAT
14898878 TTTGAAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (24 bp):
ATATATAATATATAATTTTTGAAA
Found at i:14898861 original size:26 final size:25
Alignment explanation
Indices: 14898813--14898877 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 25
14898803 TTCAAAAATA
14898813 TTTTGAAAACATATATATAATATATAGT
1 TTTTGAAAA-ATATATATAATATA-A-T
14898841 TTTTG-AAAATATATA-ATATATAAT
1 TTTTGAAAAATATATATA-ATATAAT
14898865 TTTTGAAAAATAT
1 TTTTGAAAAATAT
14898878 TTTGAAAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.17
25 9 0.26
26 12 0.34
27 3 0.09
28 5 0.14
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.45
Consensus pattern (25 bp):
TTTTGAAAAATATATATAATATAAT
Found at i:14898874 original size:64 final size:63
Alignment explanation
Indices: 14898787--14898976 Score: 255
Period size: 64 Copynumber: 3.0 Consensus size: 63
14898777 GGTGCTATTT
*
14898787 AATATAT-ATA-AT-ATTTTTCAAAAATATTTTGAAAACATATATATAATATATAGTTTTTGAA
1 AATATATAATATATAATTTTTGAAAAATATTTTGAAAA-ATATATATAATATATAGTTTTTGAA
*
14898848 AATATATAATATATAATTTTTGAAAAATATTTTG-AAAATGTATATAATATATAGTTTTTGAA
1 AATATATAATATATAATTTTTGAAAAATATTTTGAAAAATATATATAATATATAGTTTTTGAA
* * * *
14898910 AACCGATATATTATATAGTTTTTG-AAAACATTTTGAAAATATATATATAATATATAGTTTTTGA
1 AA--TATATAATATATAATTTTTGAAAAATATTTTGAAAA-ATATATATAATATATAGTTTTTGA
14898974 A
63 A
14898975 AA
1 AA
14898977 CATTTTGAAA
Statistics
Matches: 115, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
61 7 0.06
62 29 0.25
63 15 0.13
64 38 0.33
65 26 0.23
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (63 bp):
AATATATAATATATAATTTTTGAAAAATATTTTGAAAAATATATATAATATATAGTTTTTGAA
Found at i:14898883 original size:36 final size:37
Alignment explanation
Indices: 14898841--14898911 Score: 117
Period size: 38 Copynumber: 1.9 Consensus size: 37
14898831 AATATATAGT
14898841 TTTTGAAAA-TATATAATATATAATTTTTGAAAAATA
1 TTTTGAAAAGTATATAATATATAATTTTTGAAAAATA
*
14898877 TTTTGAAAATGTATATAATATATAGTTTTTGAAAA
1 TTTTGAAAA-GTATATAATATATAATTTTTGAAAA
14898912 CCGATATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 9 0.28
38 23 0.72
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.45
Consensus pattern (37 bp):
TTTTGAAAAGTATATAATATATAATTTTTGAAAAATA
Found at i:14898906 original size:26 final size:26
Alignment explanation
Indices: 14898889--14898938 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14898879 TTGAAAATGT
14898889 ATATAATATATAGTTTTTGAAAACCG
1 ATATAATATATAGTTTTTGAAAACCG
*
14898915 ATATATTATATAGTTTTTGAAAAC
1 ATATAATATATAGTTTTTGAAAAC
14898939 ATTTTGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (26 bp):
ATATAATATATAGTTTTTGAAAACCG
Found at i:14898956 original size:37 final size:37
Alignment explanation
Indices: 14898915--14899019 Score: 183
Period size: 39 Copynumber: 2.8 Consensus size: 37
14898905 TTGAAAACCG
14898915 ATATATTATATAGTTTTTGAAAACATTTTGAAAATAT
1 ATATATTATATAGTTTTTGAAAACATTTTGAAAATAT
14898952 ATATATAATATATAGTTTTTGAAAACATTTTGAAAATAT
1 ATATAT--TATATAGTTTTTGAAAACATTTTGAAAATAT
*
14898991 ATACATTATATAGTTTTTGAAAACATTTT
1 ATATATTATATAGTTTTTGAAAACATTTT
14899020 ATATATATTA
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
37 29 0.45
39 36 0.55
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.46
Consensus pattern (37 bp):
ATATATTATATAGTTTTTGAAAACATTTTGAAAATAT
Found at i:14899096 original size:16 final size:15
Alignment explanation
Indices: 14899063--14899095 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
14899053 TAAATTATTA
14899063 TTTATTATTTTCATT
1 TTTATTATTTTCATT
14899078 TTTATTTATTTTC-TT
1 TTTA-TTATTTTCATT
14899093 TTT
1 TTT
14899096 TGGTCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTATTTTCATT
Found at i:14900479 original size:17 final size:19
Alignment explanation
Indices: 14900443--14900482 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
14900433 TGTATTTAAT
14900443 TTTTCAATTGACATTTTTTA
1 TTTTCAATTGACA-TTTTTA
14900463 TTTT-AATTGAC-TTTTTA
1 TTTTCAATTGACATTTTTA
14900480 TTT
1 TTT
14900483 ACATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
19 7 0.35
20 4 0.20
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTTCAATTGACATTTTTA
Found at i:14901371 original size:21 final size:21
Alignment explanation
Indices: 14901347--14901445 Score: 62
Period size: 21 Copynumber: 4.6 Consensus size: 21
14901337 ATTTATAGAT
14901347 AATATTAATAATATAATATTA
1 AATATTAATAATATAATATTA
* *
14901368 AATATTTAA-AATATATTTACTA
1 AATA-TTAATAATATA-ATATTA
* *
14901390 ATATTTTTTATAATATAATA-TA
1 A-A-TATTAATAATATAATATTA
* *
14901412 ATATTTTAATAATAT-ATATTTT
1 A-ATATTAATAATATAATA-TTA
14901434 AATATT-ATAATA
1 AATATTAATAATA
14901446 AAATTATTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 15
0.73 0.09 0.17
Matches are distributed among these distances:
20 9 0.14
21 25 0.40
22 16 0.25
23 6 0.10
24 7 0.11
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTAATAATATAATATTA
Found at i:14901405 original size:33 final size:32
Alignment explanation
Indices: 14901351--14901439 Score: 83
Period size: 33 Copynumber: 2.7 Consensus size: 32
14901341 ATAGATAATA
*
14901351 TTAATAATATA-ATATTAAATATTTAAAATATAT
1 TTAATAATATATAT-TTTAATATTTAAAATAT-T
* * * *
14901384 TTACTAATAT-TTTTTATAATATAATATAATATT
1 TTAATAATATATATTT-TAATAT-TTAAAATATT
14901417 TTAATAATATATATTTTAATATT
1 TTAATAATATATATTTTAATATT
14901440 ATAATAAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
32 2 0.05
33 31 0.70
34 11 0.25
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (32 bp):
TTAATAATATATATTTTAATATTTAAAATATT
Found at i:14901432 original size:15 final size:15
Alignment explanation
Indices: 14901404--14901442 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
14901394 TTTTTATAAT
14901404 ATAATATAATATTTTA
1 ATAATAT-ATATTTTA
14901420 ATAATATATATTTTA
1 ATAATATATATTTTA
*
14901435 ATATTATA
1 ATAATATA
14901443 ATAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 15 0.68
16 7 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATATATATTTTA
Found at i:14901436 original size:23 final size:23
Alignment explanation
Indices: 14901378--14901446 Score: 70
Period size: 23 Copynumber: 3.0 Consensus size: 23
14901368 AATATTTAAA
*
14901378 ATATATTTACTAATATTTTTTATAAT
1 ATATATTT--TAATA-TTTTAATAAT
*
14901404 ATA-A-TATAATATTTTAATAAT
1 ATATATTTTAATATTTTAATAAT
*
14901425 ATATATTTTAATATTATAATAA
1 ATATATTTTAATATTTTAATAA
14901447 AATTATTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
21 12 0.32
22 6 0.16
23 14 0.38
24 1 0.03
25 1 0.03
26 3 0.08
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (23 bp):
ATATATTTTAATATTTTAATAAT
Found at i:14901439 original size:45 final size:45
Alignment explanation
Indices: 14901330--14901428 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
14901320 ATTAATTATA
* * *
14901330 AAAATATATTTA-TAGATAATATTAATAATATAATATTAAATATTT
1 AAAATATATTTACTA-ATATTTTTTATAATATAATATTAAATATTT
14901375 AAAATATATTTACTAATATTTTTTATAATATAATA-T-AATATTTT
1 AAAATATATTTACTAATATTTTTTATAATATAATATTAAATA-TTT
14901419 AATAATATAT
1 AA-AATATAT
14901429 ATTTTAATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
43 4 0.08
44 6 0.12
45 36 0.75
46 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (45 bp):
AAAATATATTTACTAATATTTTTTATAATATAATATTAAATATTT
Found at i:14910710 original size:15 final size:15
Alignment explanation
Indices: 14910680--14910718 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
14910670 CAACTTTGAA
*
14910680 TTCCTTT-AATTCAT
1 TTCCTTTCAAGTCAT
*
14910694 TTTCTTTCAAGTCAT
1 TTCCTTTCAAGTCAT
14910709 TTCCTTTCAA
1 TTCCTTTCAA
14910719 ATATTCAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.21, C:0.23, G:0.03, T:0.54
Consensus pattern (15 bp):
TTCCTTTCAAGTCAT
Found at i:14913605 original size:22 final size:22
Alignment explanation
Indices: 14913579--14913627 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
14913569 ACAAAAGGTT
14913579 GAAGTTGAGATAGAGCCAAAAA
1 GAAGTTGAGATAGAGCCAAAAA
14913601 GAAGTTGAGATAGAGCCAAAAA
1 GAAGTTGAGATAGAGCCAAAAA
14913623 GAAGT
1 GAAGT
14913628 AAAAGGGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.49, C:0.08, G:0.29, T:0.14
Consensus pattern (22 bp):
GAAGTTGAGATAGAGCCAAAAA
Found at i:14913706 original size:27 final size:27
Alignment explanation
Indices: 14913668--14913730 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
14913658 TAAGATTTTC
14913668 TAACCTATATGCTAGAGACTGAACCTT
1 TAACCTATATGCTAGAGACTGAACCTT
14913695 TAACCTATATGCTAGAGACTGAACCTT
1 TAACCTATATGCTAGAGACTGAACCTT
*
14913722 TAACTTATA
1 TAACCTATA
14913731 GTGAAGCTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (27 bp):
TAACCTATATGCTAGAGACTGAACCTT
Found at i:14915891 original size:21 final size:22
Alignment explanation
Indices: 14915853--14915893 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14915843 TTCATGAAAA
*
14915853 AAAATGTTAAGTCATTTCATCC
1 AAAATGTTAAATCATTTCATCC
*
14915875 AAAAT-TTAAATCTTTTCAT
1 AAAATGTTAAATCATTTCAT
14915894 GTTAAGCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (22 bp):
AAAATGTTAAATCATTTCATCC
Found at i:14916066 original size:15 final size:15
Alignment explanation
Indices: 14916031--14916084 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
14916021 CAACTTTGAA
14916031 TTCCTTT-AA-TTCAT
1 TTCCTTTCAAGTT-AT
*
14916045 TTTCTTTCAAGTTAT
1 TTCCTTTCAAGTTAT
14916060 TTCCTTTCAAGTTAT
1 TTCCTTTCAAGTTAT
14916075 TTCCTTTCAA
1 TTCCTTTCAA
14916085 ATATTCAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 6 0.17
15 28 0.78
16 2 0.06
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.56
Consensus pattern (15 bp):
TTCCTTTCAAGTTAT
Found at i:14922360 original size:97 final size:97
Alignment explanation
Indices: 14922240--14922434 Score: 318
Period size: 97 Copynumber: 2.0 Consensus size: 97
14922230 TACACATTTT
* * * **
14922240 TTCCACTTTAAGATTAAGCAAACCCGTTAAGATGGCATGATATATCCCGAAACAAATTTATTTGT
1 TTCCACTTTAAGATTAAGCAAACCCATTAAAATGACATGATATATCCCGAAACAAATTTATTTAC
14922305 TATCTCAACTTTACCACAATTTCTGAATCATC
66 TATCTCAACTTTACCACAATTTCTGAATCATC
*
14922337 TTCCACTTTAAGATTAAGTAAACCCATTAAAATGACATGATATATCCCGAAACAAATTTATTTAC
1 TTCCACTTTAAGATTAAGCAAACCCATTAAAATGACATGATATATCCCGAAACAAATTTATTTAC
* *
14922402 TATCTCGACTTTACCACAATTTCTGAATTATC
66 TATCTCAACTTTACCACAATTTCTGAATCATC
14922434 T
1 T
14922435 CAGATTAAAG
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 90 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (97 bp):
TTCCACTTTAAGATTAAGCAAACCCATTAAAATGACATGATATATCCCGAAACAAATTTATTTAC
TATCTCAACTTTACCACAATTTCTGAATCATC
Found at i:14922947 original size:34 final size:34
Alignment explanation
Indices: 14922904--14923115 Score: 130
Period size: 34 Copynumber: 6.1 Consensus size: 34
14922894 ATTTACTCAA
* *
14922904 AATAGATATCTTTTAATATTCAAATTTTAATAGAT
1 AATA-ATATCTTTTAATATTCAAATTTAAAAAGAT
* * * *
14922939 AATAATATCTTTTAAT-TTGAGATATTCAAAACAT
1 AATAATATCTTTTAATATTCAAAT-TTAAAAAGAT
* * *
14922973 -ATAGATACCTTTTAATATTCAAACTTAAAGAGAT
1 AATA-ATATCTTTTAATATTCAAATTTAAAAAGAT
* *
14923007 AATAAATATCTTTTAAT-TTGAAATATTCAAAAGGAT
1 AAT-AATATCTTTTAATATTCAAAT-TT-AAAAAGAT
* * * *
14923043 -ATAATTATCTTTTAATATTTAAAGTTAAATATAT
1 AATAA-TATCTTTTAATATTCAAATTTAAAAAGAT
* *
14923077 AATAAATAGAT-TTTTAAT-TTGAAATATTAAAAAAAT
1 AAT-AAT--ATCTTTTAATATTCAAAT-TTAAAAAGAT
14923113 AAT
1 AAT
14923116 TGTCCTACTA
Statistics
Matches: 137, Mismatches: 26, Indels: 27
0.72 0.14 0.14
Matches are distributed among these distances:
33 8 0.06
34 49 0.36
35 46 0.34
36 32 0.23
37 2 0.01
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (34 bp):
AATAATATCTTTTAATATTCAAATTTAAAAAGAT
Found at i:14923080 original size:70 final size:68
Alignment explanation
Indices: 14922910--14923166 Score: 260
Period size: 68 Copynumber: 3.8 Consensus size: 68
14922900 TCAAAATAGA
* * *
14922910 TATCTTTTAATATTCAAATTTTAATAGATAAT-AATATCTTTTAATTTGAGATATTCAAAACATA
1 TATCTTTTAATATTCAAAATTAAATAGATAATAAATATCTTTTAATTTGAAATATTCAAAA-ATA
14922974 TAGA-
65 TA-AT
* * *
14922978 TACCTTTTAATATTCAAACTTAAAGAGATAATAAATATCTTTTAATTTGAAATATTCAAAAGGAT
1 TATCTTTTAATATTCAAAATTAAATAGATAATAAATATCTTTTAATTTGAAATATTCAAAA--AT
14923043 ATAAT
64 ATAAT
* * * *
14923048 TATCTTTTAATATTTAAAGTTAAATATATAATAAATAGAT-TTTTAATTTGAAATATT-AAAAAA
1 TATCTTTTAATATTCAAAATTAAATAGATAATAAAT--ATCTTTTAATTTGAAATATTCAAAAAT
14923111 ATAAT
64 ATAAT
* ** * *
14923116 TGTCCTACTAATATT-AAAATTGAA-A-AT-ATAAATATCTTTTAATTTGGAATA
1 TAT-CTTTTAATATTCAAAATTAAATAGATAATAAATATCTTTTAATTTGAAATA
14923167 CTATGAATTT
Statistics
Matches: 164, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
63 2 0.01
64 14 0.09
65 6 0.04
66 2 0.01
67 1 0.01
68 43 0.26
69 37 0.23
70 40 0.24
71 17 0.10
72 2 0.01
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (68 bp):
TATCTTTTAATATTCAAAATTAAATAGATAATAAATATCTTTTAATTTGAAATATTCAAAAATAT
AAT
Found at i:14924787 original size:17 final size:17
Alignment explanation
Indices: 14924748--14924787 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14924738 TAATTAACAT
*
14924748 TAATATATATATATTTG
1 TAATATATATATATGTG
14924765 -ATATATATATATATGTG
1 TA-ATATATATATATGTG
14924782 TAATAT
1 TAATAT
14924788 TAAAAGAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.05
17 18 0.90
18 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (17 bp):
TAATATATATATATGTG
Found at i:14925509 original size:16 final size:17
Alignment explanation
Indices: 14925475--14925507 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
14925465 TTCATTAATC
14925475 TATTTTAATTATTTATT
1 TATTTTAATTATTTATT
14925492 TATTTT-ATTA-TTATT
1 TATTTTAATTATTTATT
14925507 T
1 T
14925508 TAATTTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 4 0.25
17 6 0.38
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTTAATTATTTATT
Found at i:14929427 original size:55 final size:54
Alignment explanation
Indices: 14929359--14929481 Score: 149
Period size: 55 Copynumber: 2.3 Consensus size: 54
14929349 TGCACAAAGT
* * *
14929359 TGCCAAATTTTAGATTAAAG-AACAAAGGTGATCATTCATCCCAAAAACACAGAGG
1 TGCCAGATTTTAGATTAAAGCAA-AAAGGTGATCAATCAACCC-AAAACACAGAGG
* * * * *
14929414 TGCCAGATCTTAGATTGAAGCAAAGAGGTGCTCAATCAACCCAAAGCACAGAGG
1 TGCCAGATTTTAGATTAAAGCAAAAAGGTGATCAATCAACCCAAAACACAGAGG
14929468 TGCCAGATTTTAGA
1 TGCCAGATTTTAGA
14929482 CTGAAGCACA
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 24 0.41
55 32 0.55
56 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (54 bp):
TGCCAGATTTTAGATTAAAGCAAAAAGGTGATCAATCAACCCAAAACACAGAGG
Found at i:14929481 original size:54 final size:55
Alignment explanation
Indices: 14929350--14929503 Score: 168
Period size: 54 Copynumber: 2.8 Consensus size: 55
14929340 TTTCTTTACT
* * * * * * * *
14929350 GCACAAAGTTGCCAAATTTTAGATTAAAG-AACAAAGGTGATCATTCATCCCAAAA
1 GCACAGAGGTGCCAGATTTTAGATTGAAGCAA-AGAGGTGCTCAATCAACCCAAAA
* *
14929405 ACACAGAGGTGCCAGATCTTAGATTGAAGCAAAGAGGTGCTCAATCAACCC-AAA
1 GCACAGAGGTGCCAGATTTTAGATTGAAGCAAAGAGGTGCTCAATCAACCCAAAA
* * *
14929459 GCACAGAGGTGCCAGATTTTAGACTGAAGCACAGAAGTGCTCAAT
1 GCACAGAGGTGCCAGATTTTAGATTGAAGCAAAGAGGTGCTCAAT
14929504 TATTTTTAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
54 43 0.52
55 38 0.46
56 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (55 bp):
GCACAGAGGTGCCAGATTTTAGATTGAAGCAAAGAGGTGCTCAATCAACCCAAAA
Found at i:14929492 original size:28 final size:27
Alignment explanation
Indices: 14929406--14929498 Score: 75
Period size: 28 Copynumber: 3.4 Consensus size: 27
14929396 ATCCCAAAAA
*
14929406 CACAGAGGTGCCAGATCTTAGATTGAAG
1 CACAGAGGTGCCAGAT-TTAGACTGAAG
* * **
14929434 CAAAGAGGTGCTCA-A-TCA-ACCCAAAG
1 CACAGAGGTGC-CAGATTTAGA-CTGAAG
14929460 CACAGAGGTGCCAGATTTTAGACTGAAG
1 CACAGAGGTGCCAGA-TTTAGACTGAAG
*
14929488 CACAGAAGTGC
1 CACAGAGGTGC
14929499 TCAATTATTT
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
25 3 0.06
26 16 0.33
28 27 0.55
29 3 0.06
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (27 bp):
CACAGAGGTGCCAGATTTAGACTGAAG
Found at i:14929597 original size:22 final size:23
Alignment explanation
Indices: 14929564--14929607 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
14929554 CTCAATCGTT
14929564 AATTTAAGCAC-ATAGGTGCTATG
1 AATTTAAGCACAAT-GGTGCTATG
14929587 AATTT-AGCACAATGGTGCTAT
1 AATTTAAGCACAATGGTGCTAT
14929608 TTTTTAGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (23 bp):
AATTTAAGCACAATGGTGCTATG
Found at i:14934844 original size:39 final size:36
Alignment explanation
Indices: 14934801--14934876 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 36
14934791 ATAATTGATT
* *
14934801 AATTGAATGATATTGATGTTATTTATAATAAGTCATGTC
1 AATTG-ATGA-ATAGAT-TTATTAATAATAAGTCATGTC
* *
14934840 AATTGGTGAATAGATTTATTAATAATAAGTTATGTC
1 AATTGATGAATAGATTTATTAATAATAAGTCATGTC
14934876 A
1 A
14934877 CTAGGTGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 20 0.61
37 5 0.15
38 3 0.09
39 5 0.15
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.42
Consensus pattern (36 bp):
AATTGATGAATAGATTTATTAATAATAAGTCATGTC
Found at i:14934865 original size:36 final size:36
Alignment explanation
Indices: 14934819--14934889 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
14934809 GATATTGATG
* *
14934819 TTATTTATAATAAGTCATGTCAATTGGTGAATAGAT
1 TTATTAATAATAAGTCATGTCAATAGGTGAATAGAT
* *
14934855 TTATTAATAATAAGTTATGTCACTAGGTGAATAGA
1 TTATTAATAATAAGTCATGTCAATAGGTGAATAGA
14934890 CTATGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (36 bp):
TTATTAATAATAAGTCATGTCAATAGGTGAATAGAT
Found at i:14934999 original size:21 final size:21
Alignment explanation
Indices: 14934948--14935011 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
14934938 TTTCAACAAT
*
14934948 TCTCTTCATCAAAGGTC-AAA
1 TCTCTTCATCAAAGGTCTTAA
*
14934968 TCTCTTTATCAAATGGTCTTAA
1 TCTCTTCATCAAA-GGTCTTAA
14934990 TCT-TTCATCAAACGGTCTTAA
1 TCTCTTCATCAAA-GGTCTTAA
14935011 T
1 T
14935012 TGTTCAATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 12 0.32
21 21 0.55
22 5 0.13
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (21 bp):
TCTCTTCATCAAAGGTCTTAA
Found at i:14936569 original size:4 final size:4
Alignment explanation
Indices: 14936560--14936602 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
14936550 CGCTCTCCAT
14936560 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT
14936603 GTTCCCACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:14938925 original size:20 final size:20
Alignment explanation
Indices: 14938882--14938927 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
14938872 ACTAAAGGAG
*
14938882 TTAAATCTAAGATAAAGAAC
1 TTAAATCTAAGATAAAGAAA
*
14938902 TTAAATCTAGGATTAAA-AAA
1 TTAAATCTAAGA-TAAAGAAA
14938922 TTAAAT
1 TTAAAT
14938928 TCAAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (20 bp):
TTAAATCTAAGATAAAGAAA
Found at i:14940599 original size:7 final size:7
Alignment explanation
Indices: 14940587--14940686 Score: 64
Period size: 7 Copynumber: 13.9 Consensus size: 7
14940577 GGCAAGTTAA
14940587 ATAATAT
1 ATAATAT
14940594 ATAATAT
1 ATAATAT
*
14940601 ATACTAAT
1 ATAAT-AT
* *
14940609 ACAATTT
1 ATAATAT
14940616 AAGTAATA-
1 -A-TAATAT
14940624 ATAATAT
1 ATAATAT
*
14940631 ATAACA-
1 ATAATAT
14940637 A-AATAT
1 ATAATAT
14940643 A-ATATAT
1 ATA-ATAT
14940650 AGTAATAT
1 A-TAATAT
*
14940658 AATAATAA
1 -ATAATAT
14940666 ATAATAAT
1 ATAAT-AT
14940674 ATAATAT
1 ATAATAT
14940681 ATAATA
1 ATAATA
14940687 GCAAGAATAA
Statistics
Matches: 73, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
5 3 0.04
6 8 0.11
7 36 0.49
8 21 0.29
9 5 0.07
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (7 bp):
ATAATAT
Found at i:14940608 original size:10 final size:9
Alignment explanation
Indices: 14940590--14940683 Score: 58
Period size: 9 Copynumber: 10.6 Consensus size: 9
14940580 AAGTTAAATA
14940590 ATATATAAT
1 ATATATAAT
14940599 ATATACTAAT
1 ATATA-TAAT
* *
14940609 ACAATTTAAGT
1 A-TATATAA-T
14940620 A-ATAATAAT
1 ATAT-ATAAT
14940629 ATATA-ACA-
1 ATATATA-AT
*
14940637 AAATATAAT
1 ATATATAAT
14940646 ATATAGTAAT
1 ATATA-TAAT
14940656 ATA-ATAAT
1 ATATATAAT
14940664 A-A-ATAAT
1 ATATATAAT
14940671 A-ATATAAT
1 ATATATAAT
14940679 ATATA
1 ATATA
14940684 ATAGCAAGAA
Statistics
Matches: 69, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
7 8 0.12
8 17 0.25
9 20 0.29
10 20 0.29
11 4 0.06
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (9 bp):
ATATATAAT
Found at i:14940627 original size:3 final size:3
Alignment explanation
Indices: 14940619--14940686 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
14940609 ACAATTTAAG
* *
14940619 TAA TAA TAA TATA TAA CAA -AA T-A TAA TATA TAG TAA T-A TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
14940663 TAAA TAA TAA T-A TAA TATA TAA TA
1 T-AA TAA TAA TAA TAA TA-A TAA TA
14940687 GCAAGAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
2 8 0.15
3 34 0.63
4 12 0.22
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14940656 original size:15 final size:15
Alignment explanation
Indices: 14940587--14940686 Score: 80
Period size: 15 Copynumber: 6.4 Consensus size: 15
14940577 GGCAAGTTAA
14940587 ATAAT-ATATAATAT
1 ATAATAATATAATAT
* *
14940601 ATACTAATACAAT-T
1 ATAATAATATAATAT
14940615 -TAAGTAATAATAATAT
1 ATAA-TAAT-ATAATAT
*
14940631 ATAACAAAATATAATAT
1 AT-A-ATAATATAATAT
*
14940648 ATAGTAATATAATAAT
1 ATAATAATATAAT-AT
14940664 AAATAATAATATAATAT
1 --ATAATAATATAATAT
14940681 ATAATA
1 ATAATA
14940687 GCAAGAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
13 2 0.03
14 9 0.13
15 24 0.35
16 4 0.06
17 12 0.18
18 16 0.24
19 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAATAATATAATAT
Found at i:14940667 original size:27 final size:27
Alignment explanation
Indices: 14940587--14940686 Score: 89
Period size: 27 Copynumber: 3.6 Consensus size: 27
14940577 GGCAAGTTAA
*
14940587 ATAATATATAAT-ATATACTAATACAAT
1 ATAATATATAATAATATAATAATA-AAT
* *
14940614 TTAAGTA-ATAATAATAT-ATAACAAAAT
1 ATAA-TATATAATAATATAATAA-TAAAT
*
14940641 ATAATATATAGTAATATAATAATAAAT
1 ATAATATATAATAATATAATAATAAAT
14940668 AATAATATAATATATAATA
1 -ATAATAT-ATA-ATAATA
14940687 GCAAGAATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
26 2 0.03
27 30 0.52
28 18 0.31
29 3 0.05
30 5 0.09
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (27 bp):
ATAATATATAATAATATAATAATAAAT
Found at i:14940762 original size:10 final size:10
Alignment explanation
Indices: 14940715--14940764 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
14940705 AACACGTAGC
*
14940715 ATATATATTA
1 ATATATAGTA
*
14940725 ATATGATA-CA
1 ATAT-ATAGTA
*
14940735 ATATATAATA
1 ATATATAGTA
14940745 ATATATAGTA
1 ATATATAGTA
14940755 ATATATAGTA
1 ATATATAGTA
14940765 TTAACAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 3 0.09
10 29 0.83
11 3 0.09
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (10 bp):
ATATATAGTA
Found at i:14941248 original size:85 final size:84
Alignment explanation
Indices: 14941035--14941288 Score: 242
Period size: 85 Copynumber: 3.0 Consensus size: 84
14941025 AACGGGGATG
* * * * **
14941035 CCAAGTCAAAATCAATGATTGATATGTTTCTTTCTCTAAAGGACGCCAAATTAGGGGAACAATCT
1 CCAAGTCATAATCAATGAGTGATATG-CTCATTCTCTAAAGGACGCCAAATT-GGGGAATGATCT
* **
14941100 TACTCCTTTCTCTAAAGGATG
64 TGCTCCTTTCTCTAAAGGACA
* * * ** * * * *
14941121 CAAAATCCTAATCAATG-GTTGAGCTACTCATTTTTCTGAAGGATGCCAAATTGGGGAATGATCT
1 CCAAGTCATAATCAATGAG-TGATATGCTCA-TTCTCTAAAGGACGCCAAATTGGGGAATGATCT
*
14941185 TGCTCATTTCTCTAAAGGACA
64 TGCTCCTTTCTCTAAAGGACA
* * *
14941206 CCAAGTCATAATTAATGAGTGATATGCTCCATTCTCTAAAGGACGCCAAGTCGAGGG-ATGATCT
1 CCAAGTCATAATCAATGAGTGATATGCT-CATTCTCTAAAGGACGCCAAATTG-GGGAATGATCT
14941270 TGCTCCTTTCTCTAAAGGA
64 TGCTCCTTTCTCTAAAGGA
14941289 TGCCAAGTTG
Statistics
Matches: 131, Mismatches: 32, Indels: 11
0.75 0.18 0.06
Matches are distributed among these distances:
85 90 0.69
86 41 0.31
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (84 bp):
CCAAGTCATAATCAATGAGTGATATGCTCATTCTCTAAAGGACGCCAAATTGGGGAATGATCTTG
CTCCTTTCTCTAAAGGACA
Found at i:14946100 original size:55 final size:55
Alignment explanation
Indices: 14945825--14946512 Score: 443
Period size: 55 Copynumber: 12.7 Consensus size: 55
14945815 CGTGTCTGCC
* * * * *
14945825 CCCTATATCTTCAGAGAGTATA-AGAC-C-TACAATCTTCATCAATCGCG-TCTGCC
1 CCCTATTTCTTCAGAGAGTATAGA-ACTCGAACAATCTTCATCAAACGGGTTC-GCT
* * * *
14945878 CCCTATTTCTTCAGAGAGTATA-AGAC-C-TACAATCTTCATCAATCGCG-TCTGCC
1 CCCTATTTCTTCAGAGAGTATAGA-ACTCGAACAATCTTCATCAAACGGGTTC-GCT
* * * *
14945931 CCCTATTTCTTCAGAGAGTAT-GAGACTCGAATAATCTTCAACAATCGTG-TCAGCT
1 CCCTATTTCTTCAGAGAGTATAGA-ACTCGAACAATCTTCATCAAACGGGTTC-GCT
* * * * * *
14945986 CCCTA-TTCTTTCAGAGAGTATA-AGACTC-AATATATCTTCAACGATCGCG-TCTGCC
1 CCCTATTTC-TTCAGAGAGTATAGA-ACTCGAACA-ATCTTCATCAAACGGGTTC-GCT
* * *
14946041 CCCTATTTCTTCAGAGAGTATA-AGACTCGAACAATCTTCAACAAATGGGTTCACT
1 CCCTATTTCTTCAGAGAGTATAGA-ACTCGAACAATCTTCATCAAACGGGTTCGCT
* * * *
14946096 CCCTATTTC-TCTAGGGAGTATGGAACTC-AGAC-ATATTCTTCAAACGGGTTCGCT
1 CCCTATTTCTTC-AGAGAGTATAGAACTCGA-ACAATCTTCATCAAACGGGTTCGCT
** * *
14946150 CCCCCTTTC-TCTAGGGAGTATAGAACTCGAAC-ATC-TCTTCAAACGGGTTCGCT
1 CCCTATTTCTTC-AGAGAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
* ** *
14946203 CCTTCCTTCTTTA-AGGAGTATAGAACTCGAAC-ATC-T--TCAAACGGGTTCGCT
1 CCCTATTTCTTCAGA-GAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
* * * * * *
14946254 CCTTCTTTCTTTA-AGGAGTATAGAACTCGAACAATCTTCAACAAACAGGTTCCCT
1 CCCTATTTCTTCAGA-GAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
* * * * *
14946309 CCCTCTTTC-TCTAGGGAGTATAGAACTTGAAC-ATTTTCTTCAAACGGGTTCGCT
1 CCCTATTTCTTC-AGAGAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
* *
14946363 CCCTCTTTCTTCA-AGGAGTATAGAACTCGAAC-ATCTTCTTCAAACGGGTTCGCT
1 CCCTATTTCTTCAGA-GAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
** * * **
14946417 CCCCCTTTC-TCTAGGGAGTATAGAACTCGAACAATCTTCAACAAACATGTTCGCT
1 CCCTATTTCTTC-AGAGAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
* * * * *
14946472 CCCTCTTTC-TCTAGGGAGTATGGAACTCAAATAATCTTCAT
1 CCCTATTTCTTC-AGAGAGTATAGAACTCGAACAATCTTCAT
14946513 TTGCTTCACC
Statistics
Matches: 548, Mismatches: 61, Indels: 50
0.83 0.09 0.08
Matches are distributed among these distances:
51 46 0.08
52 3 0.01
53 126 0.23
54 149 0.27
55 215 0.39
56 9 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (55 bp):
CCCTATTTCTTCAGAGAGTATAGAACTCGAACAATCTTCATCAAACGGGTTCGCT
Found at i:14946159 original size:54 final size:54
Alignment explanation
Indices: 14946056--14946499 Score: 533
Period size: 54 Copynumber: 8.2 Consensus size: 54
14946046 TTTCTTCAGA
** * * *
14946056 GAGTATA-AGACTCGAACAATCTTCAACAAATGGGTTCACTCCCTATTTCTCTAGG
1 GAGTATAGA-ACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
14946111 GAGTATGGAACTC-AGACATATTCTTCAAACGGGTTCGCTCCCCCTTTCTCTAGG
1 GAGTATAGAACTCGA-ACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * * *
14946165 GAGTATAGAACTCGAACATC-TCTTCAAACGGGTTCGCTCCTTCCTTCTTTAAG
1 GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
14946218 GAGTATAGAACTCGAACA---TCTTCAAACGGGTTCGCTCCTTCTTTCTTTAAG
1 GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
** * *
14946269 GAGTATAGAACTCGAACAATCTTCAACAAACAGGTTCCCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
* * *
14946324 GAGTATAGAACTTGAACATTTTCTTCAAACGGGTTCGCTCCCTCTTTCT-TCAAG
1 GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCT-AGG
*
14946378 GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCCCTTTCTCTAGG
1 GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
** **
14946432 GAGTATAGAACTCGAACAATCTTCAACAAACATGTTCGCTCCCTCTTTCTCTAGG
1 GAGTATAGAACTCGAAC-ATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
*
14946487 GAGTATGGAACTC
1 GAGTATAGAACTC
14946500 AAATAATCTT
Statistics
Matches: 339, Mismatches: 40, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
51 49 0.14
52 1 0.00
53 47 0.14
54 141 0.42
55 100 0.29
56 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (54 bp):
GAGTATAGAACTCGAACATCTTCTTCAAACGGGTTCGCTCCCTCTTTCTCTAGG
Found at i:14946290 original size:213 final size:216
Alignment explanation
Indices: 14946056--14946511 Score: 629
Period size: 213 Copynumber: 2.1 Consensus size: 216
14946046 TTTCTTCAGA
** *
14946056 GAGTATA-AGACTCGAACAATCTTCAACAAATGGGTTCACTCCCTATTTCTCTAGGGAGTATGGA
1 GAGTATAGA-ACTCGAACAATCTTCAACAAACAGGTTCACTCCCTATTTCTCTAGGGAGTATAGA
*
14946120 ACTCAG-ACATATTCTTCAAACGGGTTCGCTCCCCCTTTC-TCTAGGGAGTATAGAACTCGAACA
65 ACT-AGAACATATTCTTCAAACGGGTTCGCTCCCCCTTTCTTC-AAGGAGTATAGAACTCGAACA
* *
14946183 TC-TCTTCAAACGGGTTCGCTCCTTCC-TTCTTTAAGGAGTATAGAACTCGAAC-ATCTT-CAAA
128 TCTTCTTCAAACGGGTTCGCTCC-CCCTTTCTCTAAGGAGTATAGAACTCGAACAATCTTACAAA
* * *
14946244 CGGGTTCGCTCCTTCTTTCTTTAAG
192 CAGGTTCGCTCCCTCTTTCTCTAAG
* *
14946269 GAGTATAGAACTCGAACAATCTTCAACAAACAGGTTCCCTCCCTCTTTCTCTAGGGAGTATAGAA
1 GAGTATAGAACTCGAACAATCTTCAACAAACAGGTTCACTCCCTATTTCTCTAGGGAGTATAGAA
* * *
14946334 CTTGAACATTTTCTTCAAACGGGTTCGCTCCCTCTTTCTTCAAGGAGTATAGAACTCGAACATCT
66 CTAGAACATATTCTTCAAACGGGTTCGCTCCCCCTTTCTTCAAGGAGTATAGAACTCGAACATCT
*
14946399 TCTTCAAACGGGTTCGCTCCCCCTTTCTCTAGGGAGTATAGAACTCGAACAATCTTCAACAAACA
131 TCTTCAAACGGGTTCGCTCCCCCTTTCTCTAAGGAGTATAGAACTCGAACAATCTT--ACAAACA
* *
14946464 TGTTCGCTCCCTCTTTCTCTAGG
194 GGTTCGCTCCCTCTTTCTCTAAG
* * *
14946487 GAGTATGGAACTCAAATAATCTTCA
1 GAGTATAGAACTCGAACAATCTTCA
14946512 TTTGCTTCAC
Statistics
Matches: 214, Mismatches: 20, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
212 1 0.00
213 115 0.54
214 47 0.22
215 5 0.02
218 46 0.21
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (216 bp):
GAGTATAGAACTCGAACAATCTTCAACAAACAGGTTCACTCCCTATTTCTCTAGGGAGTATAGAA
CTAGAACATATTCTTCAAACGGGTTCGCTCCCCCTTTCTTCAAGGAGTATAGAACTCGAACATCT
TCTTCAAACGGGTTCGCTCCCCCTTTCTCTAAGGAGTATAGAACTCGAACAATCTTACAAACAGG
TTCGCTCCCTCTTTCTCTAAG
Found at i:14946833 original size:1 final size:1
Alignment explanation
Indices: 14946827--14946851 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
14946817 TTGAAAACCC
14946827 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
14946852 ACATCTGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:14946964 original size:36 final size:36
Alignment explanation
Indices: 14946892--14947089 Score: 238
Period size: 36 Copynumber: 5.5 Consensus size: 36
14946882 ACTCTTCTGA
* * *
14946892 GAAGGCTTAAAATGGATCTGCTTCACTACTT-T-TGGT
1 GAAGGCTTAAGATGG-TTTGCTTCACTA-TTCTCCGGT
* * * *
14946928 GAAGACTTAAGATGCTTTGCTTCACTACTCTCTGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* *
14946964 GAAGACTTATGATGGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
* * *
14947000 GAAGGCTTCAGATTGATTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
*
14947036 GAAGGCTTCAGATGGTTTGCTTCACTATTCTCCGGT
1 GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
*
14947072 GAAGGCTTAGGATGGTTT
1 GAAGGCTTAAGATGGTTT
14947090 TTCTCCAATC
Statistics
Matches: 142, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
34 1 0.01
35 12 0.08
36 129 0.91
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (36 bp):
GAAGGCTTAAGATGGTTTGCTTCACTATTCTCCGGT
Found at i:14948485 original size:125 final size:125
Alignment explanation
Indices: 14948262--14948639 Score: 515
Period size: 125 Copynumber: 3.0 Consensus size: 125
14948252 ACTAATGTCG
* * * * *
14948262 CAACATTATTTTATTCTGGTACGGGCCTTCAAAATGCCTCAAT-ATCTCAAATTATAAGGCTCAT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCC-CCATCACCTCAAATTGTAAGGCTCAT
* * ** * *
14948326 TCTCAATGCCTTCTTGGTCTGAATCTTGTAATTTCATCATGATGTGGGTTCAGTCGCGCCC
65 TCTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
* *
14948387 CAACATTATCTCATACTGGTACGGACCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
** * *
14948452 CTTGATGCCTTCTTTGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAATCGTGCCC
66 CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
** * * * *
14948512 CAACATTATCTTATAAAGGTACGGGTCTTCAAAATACCCCAACACCTCAAATTGTAAGGCTTATT
1 CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
* *
14948577 CTCAATGCCTTCTTCGTCTGGATCTTGTCATTTCAAAATGATGGGGGTTCAGTCATGCCC
66 CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
14948637 CAA
1 CAA
14948640 TGTGGGTATT
Statistics
Matches: 222, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
124 3 0.01
125 219 0.99
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (125 bp):
CAACATTATCTTATACTGGTACGGGCCTTCAAAATGCCCCATCACCTCAAATTGTAAGGCTCATT
CTCAATGCCTTCTTCGTCTGAATCTTGTCATTTCAAAATGATGGGGGTTCAGTCGTGCCC
Found at i:14965484 original size:20 final size:20
Alignment explanation
Indices: 14965461--14965498 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14965451 ATCGACACCA
* *
14965461 CAAGAACATTATTGATACTT
1 CAAGAACAATATCGATACTT
14965481 CAAGAACAATATCGATAC
1 CAAGAACAATATCGATAC
14965499 AACTTACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (20 bp):
CAAGAACAATATCGATACTT
Found at i:14969501 original size:2 final size:2
Alignment explanation
Indices: 14969494--14969525 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14969484 TGTCCCGTAT
14969494 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14969526 TACTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14969532 original size:6 final size:5
Alignment explanation
Indices: 14969491--14969545 Score: 51
Period size: 6 Copynumber: 10.4 Consensus size: 5
14969481 TTTTGTCCCG
14969491 TATTA TA-TA TATATA TATATA TATATA TATTA TATTA CTATTA TTATTA
1 TATTA TATTA TAT-TA TAT-TA TAT-TA TATTA TATTA -TATTA -TATTA
14969540 T-TTA TA
1 TATTA TA
14969546 AAACCCGAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
4 8 0.18
5 10 0.22
6 27 0.60
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:14970622 original size:21 final size:20
Alignment explanation
Indices: 14970598--14970642 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
14970588 AATTAAGGCC
14970598 TTTAAT-TTATATATTTTACAT
1 TTTAATCTTAT-TATTTTA-AT
14970619 TTTAATCTTATTATTTTAAT
1 TTTAATCTTATTATTTTAAT
14970639 TTTA
1 TTTA
14970643 TTTGTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTAATCTTATTATTTTAAT
Found at i:14970889 original size:2 final size:2
Alignment explanation
Indices: 14970877--14970914 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14970867 ATACCTTACT
*
14970877 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14970915 GTTGTTTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14973060 original size:137 final size:137
Alignment explanation
Indices: 14972809--14973600 Score: 913
Period size: 137 Copynumber: 5.8 Consensus size: 137
14972799 TTAGGAAACA
*
14972809 TCATCCTTAGATAACAAGAAGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
* * * *
14972874 TGACCAGATGTCCTCATCACAAAGGAACAATATCATCTACCAATCAGAACTCCTCATCACAAAGG
66 TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAGG
14972939 AGTCGCG
131 AGTCGCG
* * * * * *
14972946 TCATTCTTAGATAACAAGACGTCCTCATCATGAAGGAACTATGTTATCTTATATATCTTCAAAGA
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
* * * **
14973011 TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCTACCAATCAGAACTCCTTATCATGAAGG
66 TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAGG
*
14973076 AGTCGTG
131 AGTCGCG
* * * ** * *
14973083 TCATCCTTAGATAACCAGACGTCATCATCACGAAAGAACTGTGCTATCTAAAATATCTTTAAAGA
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
* ** ** * * *
14973148 T-AGCTAGACATCCTCATCACGAAGGAACAATGTCATCCATTGATTAGAATTCCTCATCATAAAG
66 TGA-CCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAG
* *
14973212 GAG-CATCA
130 GAGTC-GCG
* * * * *
14973220 TCATCCTTAGATAGCCAGACGTCCTAATCACGAAGGAACCATATTATCTCAAATATCATTAAAGA
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
* * * ** * * * * * * * *
14973285 TGGCTATACATCCTCATCACAAAGGAACAAAGTTATCAACTGACCAGAACTCCTTATCACGAAGG
66 TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAGG
14973350 AGTCGCG
131 AGTCGCG
* * *
14973357 TCATCCTTAGATAACTAGATGTCCTCATCCCGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
* *
14973422 TGACCAGATGTCTTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTTCTCATCACAAAGG
66 TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAGG
* * *
14973487 ATTTGCT
131 AGTCGCG
* * * * * ** *
14973494 TCATCCTCAGATAACTAGACGTCCTCATCATGAAGGAACCGTGTTATCACTATTTATCCTTAAAG
1 TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTC-AAATATCTTTAAAG
* *
14973559 ATGGCCAGATGTCCTCATCACGAAGGAACAATGTCATACACC
65 ATGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACC
14973601 AGTTAGATCT
Statistics
Matches: 551, Mismatches: 99, Indels: 9
0.84 0.15 0.01
Matches are distributed among these distances:
136 2 0.00
137 498 0.90
138 51 0.09
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (137 bp):
TCATCCTTAGATAACAAGACGTCCTCATCACGAAGGAACCATGTTATCTCAAATATCTTTAAAGA
TGACCAGATGTCCTCATCACGAAGGAACAATGTCATCCACCGATCAGAACTCCTCATCACAAAGG
AGTCGCG
Found at i:14973776 original size:3 final size:3
Alignment explanation
Indices: 14973768--14973803 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
14973758 TATATATATA
*
14973768 TAT TAT TA- TAT TAC TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14973804 TATAAAACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:14974821 original size:21 final size:20
Alignment explanation
Indices: 14974797--14974841 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
14974787 AATTAAGGCC
14974797 TTTAAT-TTATATATTTTACAT
1 TTTAATCTTAT-TATTTTA-AT
14974818 TTTAATCTTATTATTTTAAT
1 TTTAATCTTATTATTTTAAT
14974838 TTTA
1 TTTA
14974842 TTTTTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTAATCTTATTATTTTAAT
Found at i:14978396 original size:27 final size:26
Alignment explanation
Indices: 14978354--14978406 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
14978344 TTCCAGAAGG
*
14978354 TACTGACTAGATCTTCTAGAAAACTGC
1 TACTGACTAGACCTTCTAG-AAACTGC
*
14978381 TACTGACTTGACCTTCTAGAAACTGC
1 TACTGACTAGACCTTCTAGAAACTGC
14978407 CACATCATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
TACTGACTAGACCTTCTAGAAACTGC
Found at i:14988227 original size:24 final size:24
Alignment explanation
Indices: 14988194--14988245 Score: 88
Period size: 25 Copynumber: 2.2 Consensus size: 24
14988184 TAGCATATTT
14988194 AAAAATAAAACTT-AAAAGAAAAG
1 AAAAATAAAACTTGAAAAGAAAAG
14988217 AAAAATGAAAACTTGAAAAGAAAAG
1 AAAAAT-AAAACTTGAAAAGAAAAG
14988242 AAAA
1 AAAA
14988246 GAAAGAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 6 0.22
24 7 0.26
25 14 0.52
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.12
Consensus pattern (24 bp):
AAAAATAAAACTTGAAAAGAAAAG
Found at i:14988255 original size:25 final size:23
Alignment explanation
Indices: 14988194--14988249 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
14988184 TAGCATATTT
*
14988194 AAAAATAAAACTTAAAAGAAAAG
1 AAAAAGAAAACTTAAAAGAAAAG
14988217 AAAAATGAAAACTTGAAAAGAAAAG
1 AAAAA-GAAAACTT-AAAAGAAAAG
14988242 -AAAAGAAA
1 AAAAAGAAA
14988250 GAACTTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 9 0.30
24 11 0.37
25 10 0.33
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.11
Consensus pattern (23 bp):
AAAAAGAAAACTTAAAAGAAAAG
Found at i:14992632 original size:41 final size:41
Alignment explanation
Indices: 14992586--14992707 Score: 163
Period size: 41 Copynumber: 3.0 Consensus size: 41
14992576 TTCTATTAAG
*
14992586 GCGTTTGTATAAAAACACCACTAAAGTATGAGTCTTTAGCA
1 GCGTTTGTATAAAAACGCCACTAAAGTATGAGTCTTTAGCA
* * * **
14992627 GCGTTTATATAAAAACGTCACTAAAGTATGAGTCTATAGTG
1 GCGTTTGTATAAAAACGCCACTAAAGTATGAGTCTTTAGCA
* * *
14992668 GTGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGC
1 GCGTTTGTATAAAAACGCCACTAAAGTATGAGTCTTTAGC
14992708 TTCATTTTTG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (41 bp):
GCGTTTGTATAAAAACGCCACTAAAGTATGAGTCTTTAGCA
Found at i:14994700 original size:18 final size:18
Alignment explanation
Indices: 14994677--14994723 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
14994667 TTTATATCTA
*
14994677 GAATAGGCACAAGTCTTT
1 GAATAGGCACAAGTCTTG
14994695 GAATAGGCACAAGTCTTG
1 GAATAGGCACAAGTCTTG
*
14994713 GAATAAGCACA
1 GAATAGGCACA
14994724 CTTGTATAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (18 bp):
GAATAGGCACAAGTCTTG
Found at i:14997460 original size:11 final size:11
Alignment explanation
Indices: 14997428--14997461 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
14997418 AATGCGAAAA
14997428 GTAAATGCAAT
1 GTAAATGCAAT
* *
14997439 GTAGATTCAAT
1 GTAAATGCAAT
14997450 GTAAATGCAAT
1 GTAAATGCAAT
14997461 G
1 G
14997462 CAATGTGTTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (11 bp):
GTAAATGCAAT
Found at i:15001450 original size:131 final size:131
Alignment explanation
Indices: 15001101--15001468 Score: 481
Period size: 131 Copynumber: 2.8 Consensus size: 131
15001091 TAATTCTAAG
* *
15001101 AGAGAAAATGATAATATCTAATGATTTCTAATCGAGAATAAATGACCTCTTATGCCTTAAAGCAA
1 AGAGAAAACGATAATATCTAATGATTTCTAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAA
* * * * *
15001166 TCATTTATTACTCCGATAAAAATGATGAGATATCACTATTTCATCTTAAAATTCAATATTGATTT
66 TCATTTATTACTCCAATGAAATTGATGAGATATCACTATTTCATCTTAAAAATCAATATTGATTC
*
15001231 G
131 A
* * * *
15001232 AGAGAAAACGATAATATCTAATGATTTCCAATCGAGAATAGATTACCTCTCATGCCTTAGAG-AC
1 AGAGAAAACGATAATATCTAATGATTTCTAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA-
* * *
15001296 ATCATTTATTAGTCCAATCGAAATTGA-GAGATATCATTATTTCTTCTTAAAAATCAATATTGAT
65 ATCATTTATTACTCCAAT-GAAATTGATGAGATATCACTATTTCATCTTAAAAATCAATATTGAT
15001360 TCA
129 TCA
* * * * *
15001363 AGAGAAAACAATAATATCTAATTATTTCTGATTGAGAATAAATGACCTATCATGCCTTAAAGCAA
1 AGAGAAAACGATAATATCTAATGATTTCTAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAA
** *
15001428 TCATTTATTACTCCAACTGAAA-TGAAAAGATATTACTATTT
66 TCATTTATTACTCCAA-TGAAATTGATGAGATATCACTATTT
15001469 TTAATGTTAA
Statistics
Matches: 204, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
130 4 0.02
131 192 0.94
132 8 0.04
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (131 bp):
AGAGAAAACGATAATATCTAATGATTTCTAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAA
TCATTTATTACTCCAATGAAATTGATGAGATATCACTATTTCATCTTAAAAATCAATATTGATTC
A
Found at i:15003524 original size:3 final size:3
Alignment explanation
Indices: 15003502--15003544 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
15003492 ATAAAATGAA
* *
15003502 AAT AAA AAT AAAT TAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15003545 GGTGTCGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15005180 original size:22 final size:20
Alignment explanation
Indices: 15005142--15005186 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
15005132 TTCACTTTTA
15005142 TTTTTCTCTTTTCTTTTCTT
1 TTTTTCTCTTTTCTTTTCTT
*
15005162 TTTTTCATCATTTTTTTTTCTT
1 TTTTTC-TC-TTTTCTTTTCTT
15005184 TTT
1 TTT
15005187 CATTTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.27
21 2 0.09
22 14 0.64
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTCTCTTTTCTTTTCTT
Found at i:15005201 original size:16 final size:17
Alignment explanation
Indices: 15005169--15005203 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15005159 CTTTTTTTCA
*
15005169 TCATTTTTTTTTCTTTT
1 TCATTTTTTTATCTTTT
15005186 TCATTTTTTTAT-TTTT
1 TCATTTTTTTATCTTTT
15005202 TC
1 TC
15005204 CTTTCTTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (17 bp):
TCATTTTTTTATCTTTT
Found at i:15005208 original size:27 final size:26
Alignment explanation
Indices: 15005137--15005210 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 26
15005127 ATTTATTCAC
15005137 TTTTATTTTTCTCTTTTC-TTTTCTTT
1 TTTTATTTTT-TCTTTTCTTTTTCTTT
15005163 TTTTCATCATTTTT-TTTTCTTTTTCATTT
1 TTTT-AT--TTTTTCTTTTCTTTTTC-TTT
*
15005192 TTTTATTTTTTCCTTTCTT
1 TTTTATTTTTTCTTTTCTT
15005211 CACACAAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
26 9 0.22
27 13 0.32
28 8 0.20
29 11 0.27
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (26 bp):
TTTTATTTTTTCTTTTCTTTTTCTTT
Found at i:15013913 original size:3 final size:3
Alignment explanation
Indices: 15013905--15013955 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
15013895 ATAAAATGAA
15013905 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15013953 AAT
1 AAT
15013956 GGTGTCGGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15015282 original size:40 final size:42
Alignment explanation
Indices: 15015220--15015308 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 42
15015210 TACATTTCTA
* *
15015220 TTTTCTTTGTTTTTCTTCA-TTTT-TCATTTTTTTCTTTTTTC
1 TTTTCTTTGTTTTTCATCATTTTTCTCATTTTTAT-TTTTTTC
15015261 TTTTCTTT-TTTTTCATCATTTTTCTCATTTTTATTTTTTTC
1 TTTTCTTTGTTTTTCATCATTTTTCTCATTTTTATTTTTTTC
*
15015302 CTTTCTT
1 TTTTCTT
15015309 CAGGCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 9 0.21
41 25 0.58
42 9 0.21
ACGTcount: A:0.07, C:0.16, G:0.01, T:0.76
Consensus pattern (42 bp):
TTTTCTTTGTTTTTCATCATTTTTCTCATTTTTATTTTTTTC
Found at i:15018762 original size:2 final size:2
Alignment explanation
Indices: 15018755--15018797 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
15018745 GAATTAGATG
15018755 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15018797 A
1 A
15018798 CTTATAAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15030600 original size:44 final size:44
Alignment explanation
Indices: 15030543--15030645 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
15030533 TTTTGTACAC
* * *
15030543 TATGCATCG-TACACTATAAAAGTGTACCGATTCATCCCTTT-AA
1 TATGCATCGATACACTATAAAAGTGCACCAATGCAT-CCTTTGAA
* *
15030586 TATGCATCGATACACTATGAAAGTGCACCAATGCATTCTTTGAA
1 TATGCATCGATACACTATAAAAGTGCACCAATGCATCCTTTGAA
* *
15030630 TGTGCATTGATACACT
1 TATGCATCGATACACT
15030646 TTGTTGTGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 13 0.25
44 38 0.75
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (44 bp):
TATGCATCGATACACTATAAAAGTGCACCAATGCATCCTTTGAA
Found at i:15031137 original size:19 final size:20
Alignment explanation
Indices: 15031093--15031137 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
15031083 AATAAAAAAA
15031093 TTGTTTTGATTTAACTGTTG
1 TTGTTTTGATTTAACTGTTG
*
15031113 TT-TTTTTATTTAA-T-TATG
1 TTGTTTTGATTTAACTGT-TG
15031131 TTGTTTT
1 TTGTTTT
15031138 CATAAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 1 0.05
18 5 0.23
19 14 0.64
20 2 0.09
ACGTcount: A:0.16, C:0.02, G:0.13, T:0.69
Consensus pattern (20 bp):
TTGTTTTGATTTAACTGTTG
Found at i:15031180 original size:13 final size:12
Alignment explanation
Indices: 15031161--15031198 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
15031151 TGTATCATAA
15031161 TTTTTCAAACAT
1 TTTTTCAAACAT
15031173 TGTTTTCAAA-AT
1 T-TTTTCAAACAT
*
15031185 TATTTCAAACAT
1 TTTTTCAAACAT
15031197 TT
1 TT
15031199 CCCTTTAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 7 0.32
12 7 0.32
13 8 0.36
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (12 bp):
TTTTTCAAACAT
Found at i:15032489 original size:14 final size:14
Alignment explanation
Indices: 15032466--15032496 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15032456 TCTCGAAATT
*
15032466 AAAATTATTTTTCA
1 AAAATGATTTTTCA
15032480 AAAATGATTTTTCA
1 AAAATGATTTTTCA
15032494 AAA
1 AAA
15032497 GCAAAATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAATGATTTTTCA
Found at i:15035124 original size:131 final size:132
Alignment explanation
Indices: 15034887--15035255 Score: 471
Period size: 131 Copynumber: 2.8 Consensus size: 132
15034877 ATAATTCTAA
* * ** *
15034887 GAGAGAAAACGATAATATCTAATGATTTTTAATCAAGAATAAATGACCTATCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCTAATTGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * *
15034952 ATCATTTATTACTCCAATCGAAATAA-CGAGATATCATTATTTCGTCTTA-AAATTCAATATTGA
66 ATCATTTATTACTCCAATCGAAAGAAGAGAGATATTACTATTTCGTCTTATAAA-TCAATATTGA
15035015 -TT
130 GTT
* * * * *
15035017 CGAGAGAAAATGATAATATCTAATTATTTCCAATTGAGAATAAATTACCTCTCATGCATTAAAAC
1 -GAGAGAAAACGATAATATCTAATTATTTCTAATTGAGAATAAATGACCTCTCATGCCTTAAAGC
*
15035082 ATTCATTTATTACTCCAATCGAAA-AAGAGAGATATTACTATTTCGTCTTATAAATCAATATTGA
65 AATCATTTATTACTCCAATCGAAAGAAGAGAGATATTACTATTTCGTCTTATAAATCAATATTGA
15035146 GTT
130 GTT
* ** *
15035149 GAGAGAAAACGGTAATATCTAATTATTTCTGGTTGACAATAAATGACCTCTCATGCCTTAAAGCA
1 GAGAGAAAACGATAATATCTAATTATTTCTAATTGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * *
15035214 GTCATTTATTACTCCAA-C-AAAGATGGAAAGATATTACTATTT
66 ATCATTTATTACTCCAATCGAAAGA-AGAGAGATATTACTATTT
15035256 TCAATGTTAA
Statistics
Matches: 207, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
129 3 0.01
130 4 0.02
131 195 0.94
132 5 0.02
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (132 bp):
GAGAGAAAACGATAATATCTAATTATTTCTAATTGAGAATAAATGACCTCTCATGCCTTAAAGCA
ATCATTTATTACTCCAATCGAAAGAAGAGAGATATTACTATTTCGTCTTATAAATCAATATTGAG
TT
Found at i:15041100 original size:45 final size:45
Alignment explanation
Indices: 15041051--15041395 Score: 378
Period size: 45 Copynumber: 7.7 Consensus size: 45
15041041 TAATGGTACC
* * *
15041051 TTAATGACATGAAAGGATTCCATAAATGAAATGCATGACGTTGCA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGCATAACGTTGCA
* *
15041096 TTAATTG-CATGAAAGGATGCCATAAATTAAATGCATAACGTTGCA
1 TTAA-CGACATGAAAGGATGCCATAAATGAAATGCATAACGTTGCA
* *
15041141 TTAACGACATGAAAAGATGCAATAAATGAAATGCATAACGGTT-CA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGCATAAC-GTTGCA
* * *
15041186 TTAACG-CGTGAAAAGATGCCATAAATGATAT-CTATAACGTTGCA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGC-ATAACGTTGCA
* * *
15041230 TTAACGACATGAAAGGATACCATAAATGAAATGCATAACGGTCCA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGCATAACGTTGCA
* * * *
15041275 TTAATGATATGAAAGGATGCCATAAATGAAATGTATAA-TTGTGCA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGCATAACGT-TGCA
* * * *
15041320 TTAACGGCATGAAAAGATGCCATAAATGAACTGCATAACGGTGCA
1 TTAACGACATGAAAGGATGCCATAAATGAAATGCATAACGTTGCA
* * **
15041365 TTATAAG-CATGAAAGGACGTTATAAATGAAA
1 TTA-ACGACATGAAAGGATGCCATAAATGAAA
15041396 ATAAAGGATA
Statistics
Matches: 253, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
43 4 0.02
44 36 0.14
45 205 0.81
46 8 0.03
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.25
Consensus pattern (45 bp):
TTAACGACATGAAAGGATGCCATAAATGAAATGCATAACGTTGCA
Found at i:15043543 original size:30 final size:30
Alignment explanation
Indices: 15043483--15043561 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
15043473 AATGAATTTA
* **
15043483 TTTGGTGACCAAATTATAAATTTGGTAAAG
1 TTTGGTGACCAAAGTATAAATTTGAAAAAG
*
15043513 TTTGGTGATCAAAGTATAAACTTT-AAAAAG
1 TTTGGTGACCAAAGTATAAA-TTTGAAAAAG
*
15043543 TTTAGG-GACCAAAATATAA
1 TTT-GGTGACCAAAGTATAA
15043562 TTGTAAATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 36 0.88
31 5 0.12
ACGTcount: A:0.42, C:0.08, G:0.18, T:0.33
Consensus pattern (30 bp):
TTTGGTGACCAAAGTATAAATTTGAAAAAG
Found at i:15045354 original size:40 final size:40
Alignment explanation
Indices: 15045234--15045355 Score: 172
Period size: 40 Copynumber: 3.0 Consensus size: 40
15045224 CACAGGTTTA
* *
15045234 TAATACACTTTGGTGTATATGGTGGGCACGACCTTATGTA
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
* *
15045274 TAATACGCTTCGTTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
* * * *
15045314 TAATATACTTCGGAGTATATGGTGGGCATGACCTTTTGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
15045354 TA
1 TA
15045356 GCACTACGGT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:15045530 original size:45 final size:45
Alignment explanation
Indices: 15045466--15045620 Score: 206
Period size: 45 Copynumber: 3.4 Consensus size: 45
15045456 GTAACCATGC
**
15045466 AAATAAGCTTACGAA-CTTATGGAATAAATGAAAAGTATATTAGTA
1 AAATAAGCTTAC-AAGCTTATGGAATAAATGGTAAGTATATTAGTA
* *
15045511 AAATAAGCTTACAAGCTTAT-GAATTGAATGGTAAGTATATTTGTA
1 AAATAAGCTTACAAGCTTATGGAA-TAAATGGTAAGTATATTAGTA
* *
15045556 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACAAGCTTATGGAATAAATGGTAAGTATATTAGTA
**
15045601 AAATAAGCTTATGAGCTTAT
1 AAATAAGCTTACAAGCTTAT
15045621 AGGATTAATG
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
44 5 0.05
45 91 0.92
46 3 0.03
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (45 bp):
AAATAAGCTTACAAGCTTATGGAATAAATGGTAAGTATATTAGTA
Found at i:15047210 original size:22 final size:21
Alignment explanation
Indices: 15047185--15047229 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
15047175 ACAAATAAGA
15047185 TATTTAATAAAAATAATATGTT
1 TATTTAATAAAAATAATAT-TT
* * *
15047207 TATTTGATACATATAATATTT
1 TATTTAATAAAAATAATATTT
15047228 TA
1 TA
15047230 ACCAAAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (21 bp):
TATTTAATAAAAATAATATTT
Found at i:15047502 original size:93 final size:93
Alignment explanation
Indices: 15047264--15047516 Score: 237
Period size: 93 Copynumber: 2.7 Consensus size: 93
15047254 TTGTAATTAT
* *
15047264 AAATAAATATAAATATTTGAAAAGAAA-ATAATTATTGTAATTACCAAAC-CTTATT-AAATATA
1 AAATAAATATATATATTT-AAAAGAAAGATAATTATTGT-ATTATCAAACTC-TATTAAAATATA
* * *
15047326 TATTTTTATCAGATAAAATCTAATCTCAGTTG
63 TATTTATAT-AGATAAAATCTAATATCAGTTA
* * * * * * * * **
15047358 AAATATATTTATATATTTTTACA-ATAGATCATTATTTTTATTGTCGTACTCTATTAAAATATAT
1 AAATAAATATATATA-TTTAAAAGAAAGATAATTA-TTGTATTATCAAACTCTATTAAAATATAT
* *
15047422 ATTTATAT-GATAAAATCTTATATCATTTA
64 ATTTATATAGATAAAATCTAATATCAGTTA
* *
15047451 AAATAGATATATATATTTAAAAGAAAGATAATTATTGTAGTTATCAAACTCTATTAATATATATA
1 AAATAAATATATATATTTAAAAGAAAGATAATTATTGTA-TTATCAAACTCTATTAAAATATATA
15047516 T
65 T
15047517 ACATTATATG
Statistics
Matches: 124, Mismatches: 28, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
92 9 0.07
93 63 0.51
94 30 0.24
95 22 0.18
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (93 bp):
AAATAAATATATATATTTAAAAGAAAGATAATTATTGTATTATCAAACTCTATTAAAATATATAT
TTATATAGATAAAATCTAATATCAGTTA
Found at i:15052839 original size:24 final size:26
Alignment explanation
Indices: 15052806--15052856 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
15052796 AAATAATCAA
*
15052806 ATAAAATAATTAAAATA-AC-TATAT
1 ATAAAATAATAAAAATATACGTATAT
*
15052830 ATAAATTAATAAAAATATACGTATAT
1 ATAAAATAATAAAAATATACGTATAT
15052856 A
1 A
15052857 CACAACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 15 0.65
25 2 0.09
26 6 0.26
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
ATAAAATAATAAAAATATACGTATAT
Found at i:15054029 original size:16 final size:15
Alignment explanation
Indices: 15054012--15054060 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
15054002 AAATGTAATA
15054012 AAATAACATATAAAT
1 AAATAACATATAAAT
*
15054027 AAATAA-ATATATAT
1 AAATAACATATAAAT
* *
15054041 ATATATCATATAATAT
1 AAATAACATATAA-AT
15054057 AAAT
1 AAAT
15054061 GTGTGATATG
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
14 11 0.41
15 11 0.41
16 5 0.19
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (15 bp):
AAATAACATATAAAT
Found at i:15054871 original size:106 final size:105
Alignment explanation
Indices: 15054686--15055008 Score: 434
Period size: 106 Copynumber: 3.0 Consensus size: 105
15054676 TGTATTGCTC
* * * * * *
15054686 CGAGTCTAATATCCCCTGTCGTGAAGTTGAAATTGGCTCTGGAACTGGGAAATTATTTGTTAACA
1 CGAGTCTAATATCCTC-GTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTTGTTGACA
* *
15054751 GTCAACCGCCCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCT
65 GTCAGCCGCTCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCT
**
15054792 CGAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTCATTGACA
1 CGAGTCTAATATCC-TCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTTGTTGACA
*
15054857 GTCAGCCGCTCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
65 GTCAGCCGCTCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCT
*
15054898 CGAGTCTAATATCCCTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAGTTATTTGTTGACA
1 CGAGTCTAATAT-CCTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTTGTTGACA
** * *
15054963 ACCAGTCG-TCCCTTC-CTTGTGAAGTTGAACTTGTGTTGTCT
65 GTCAGCCGCT-CCTTCGC-TGTGAAGTTGAGCTTGTGTTGTCT
*
15055004 TGAGT
1 CGAGT
15055009 GGCATGATAT
Statistics
Matches: 193, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
105 2 0.01
106 188 0.97
107 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (105 bp):
CGAGTCTAATATCCTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTATTTGTTGACAG
TCAGCCGCTCCTTCGCTGTGAAGTTGAGCTTGTGTTGTCT
Found at i:15056046 original size:51 final size:51
Alignment explanation
Indices: 15055967--15056065 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
15055957 TCTTTTGTTC
* * * *
15055967 TTTTTTCTCTTTTTCAATTAAGGGCGCCCTTTCGGGTTTTCACCCTAAACG
1 TTTTTCCTCTTTTTCAATTAAGGACGCCCTTTCAGATTTTCACCCTAAACG
* *
15056018 TTTTTCCTTTTTTTCAACTT-AGGACGCCCTTTCAGATTTTCATCCTAA
1 TTTTTCCTCTTTTTCAA-TTAAGGACGCCCTTTCAGATTTTCACCCTAA
15056066 GTGAAGTACT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 39 0.95
52 2 0.05
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.45
Consensus pattern (51 bp):
TTTTTCCTCTTTTTCAATTAAGGACGCCCTTTCAGATTTTCACCCTAAACG
Found at i:15066437 original size:13 final size:13
Alignment explanation
Indices: 15066419--15066448 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15066409 TAGCTTACAT
15066419 TAAATAAAACAAA
1 TAAATAAAACAAA
*
15066432 TAAATAAAATAAA
1 TAAATAAAACAAA
15066445 TAAA
1 TAAA
15066449 AGTATATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAATAAAACAAA
Found at i:15066683 original size:24 final size:26
Alignment explanation
Indices: 15066650--15066700 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
15066640 AAATAATCAA
*
15066650 ATAAAATAATTAAAATA-AC-TATAT
1 ATAAAATAATAAAAATATACGTATAT
*
15066674 ATAAATTAATAAAAATATACGTATAT
1 ATAAAATAATAAAAATATACGTATAT
15066700 A
1 A
15066701 CACAACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 15 0.65
25 2 0.09
26 6 0.26
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (26 bp):
ATAAAATAATAAAAATATACGTATAT
Found at i:15082469 original size:15 final size:16
Alignment explanation
Indices: 15082439--15082469 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15082429 TATGGTTGGG
15082439 TAGATTGTTATTTAAA
1 TAGATTGTTATTTAAA
15082455 TAGATTGTT-TTTAAA
1 TAGATTGTTATTTAAA
15082470 GGATAGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (16 bp):
TAGATTGTTATTTAAA
Found at i:15084305 original size:3 final size:3
Alignment explanation
Indices: 15084297--15084333 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
15084287 TTTATTTATG
15084297 ATA ATA ATA ATA ATA ATA ATA ATTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
15084334 CTCAATATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:15084340 original size:16 final size:16
Alignment explanation
Indices: 15084297--15084345 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
15084287 TTTATTTATG
15084297 ATAATAAT-AATAATA
1 ATAATAATCAATAATA
*
15084312 ATAATAATTAATAATA
1 ATAATAATCAATAATA
* *
15084328 ATAATACTCAATATTA
1 ATAATAATCAATAATA
15084344 AT
1 AT
15084346 TAATTTTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (16 bp):
ATAATAATCAATAATA
Found at i:15084827 original size:104 final size:104
Alignment explanation
Indices: 15084647--15084881 Score: 271
Period size: 104 Copynumber: 2.3 Consensus size: 104
15084637 AAGATGATGT
* * * * * * *
15084647 TGTTCCTTCTTGTTGAGGAAGTTGGGTCAATCTGGAGTTAATTTGGTGTTGAAGACTACATTGGT
1 TGTTCCTTCTCGTTGAGGAAGTCGGGTAAATATGGAGATAATATGGTGTTGAAGACTACATTGCT
* * *
15084712 CATCCATGTTGAAGAGTTGTGGCCATTTTCATATGACGA-
66 CATCCATGTTGAAGAGTTCTGACCACTTTCATATGAC-AC
* *
15084751 TGTTCCTTCACGTTGAGGAAGTCGGGTAAATATGGAGATAATATGGTGTTGAAGA-T-GA-TGCT
1 TGTTCCTTCTCGTTGAGGAAGTCGGGTAAATATGGAGATAATATGGTGTTGAAGACTACATTGCT
*
15084813 CATCATTCATGTTGAAGAGTTCTGACCGCTTTCATATGACAC
66 CATC---CATGTTGAAGAGTTCTGACCACTTTCATATGACAC
* *
15084855 TGCTCCTTCTCATTGAGGAAGTCGGGT
1 TGTTCCTTCTCGTTGAGGAAGTCGGGT
15084882 CAATGGAAGA
Statistics
Matches: 111, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
101 7 0.06
102 1 0.01
103 2 0.02
104 101 0.91
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.35
Consensus pattern (104 bp):
TGTTCCTTCTCGTTGAGGAAGTCGGGTAAATATGGAGATAATATGGTGTTGAAGACTACATTGCT
CATCCATGTTGAAGAGTTCTGACCACTTTCATATGACAC
Found at i:15085625 original size:100 final size:101
Alignment explanation
Indices: 15085393--15085680 Score: 370
Period size: 100 Copynumber: 2.8 Consensus size: 101
15085383 GGTGATATAA
* * * * *
15085393 AATTTTGTTTCGAGTG-AACAAATTTCAAAATTTTCATTTCAAGGGAAGATTATCTCAAGAGAGA
1 AATTTTGTTTCAAGTGAAAC-AATTTCAAAATTTT-GTTTCGAGGGAAAATTATCTCAAGCGAGA
*
15085457 AGAAATTTGTTTTTAAGGAAAACAATCTCAAGTGAGATT
64 AGAAATTTG-TTTTAAGGAAAACAATCTCAAGTGAGATC
* * * *
15085496 AATTTTGTTTCAAGTGAAA-TATTTCAAAATTTGTGTTTCGAGGGAAAACTGTCTCAAGCGAGAT
1 AATTTTGTTTCAAGTGAAACAATTTCAAAATTT-TGTTTCGAGGGAAAATTATCTCAAGCGAGAA
*
15085560 GAAATTTGTTTTAA-GAGAACAATCTCAAGTGAGATC
65 GAAATTTGTTTTAAGGAAAACAATCTCAAGTGAGATC
* *
15085596 AATTTTGTTTCAATTGAAACAATTT-AAAATTTATGTTTCGAGGGAAAATTATCTCAAGCGAGAC
1 AATTTTGTTTCAAGTGAAACAATTTCAAAATTT-TGTTTCGAGGGAAAATTATCTCAAGCGAGAA
15085660 GAAATTTG-TTTATAGGAAAAC
65 GAAATTTGTTTTA-AGGAAAAC
15085681 GATATGAAAG
Statistics
Matches: 162, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
99 4 0.02
100 82 0.51
101 15 0.09
102 43 0.27
103 16 0.10
104 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (101 bp):
AATTTTGTTTCAAGTGAAACAATTTCAAAATTTTGTTTCGAGGGAAAATTATCTCAAGCGAGAAG
AAATTTGTTTTAAGGAAAACAATCTCAAGTGAGATC
Found at i:15085786 original size:67 final size:66
Alignment explanation
Indices: 15085625--15085826 Score: 172
Period size: 67 Copynumber: 3.0 Consensus size: 66
15085615 CAATTTAAAA
* * * * * * *
15085625 TTTATGTTTCGAGGGAAAATTATCTCAAGCGAGACGAAATTTGTTTATAG-GAAAACGATATGAA
1 TTTATGTTTCAAGAGAAAA-TATCTCAAGCGAGACAAAATTTGTTTAGAGAG-AAACAATCTCAA
15085689 AGG
64 AGG
* * * * * * *
15085692 CTTATGTTTCAAAAGAAACTGTTTCAAGTGAGACAAAAATTTGTTTGGAGAGAAACAATCTCAAA
1 TTTATGTTTCAAGAGAAAATATCTCAAGCGAGAC-AAAATTTGTTTAGAGAGAAACAATCTCAAA
*
15085757 GT
65 GG
* * * * * *
15085759 TTTATGTTTCAAGAGAAAATATCTCAAGCAAGATGAAACTTTGTTTTGAGAAAAATAATCTCAAA
1 TTTATGTTTCAAGAGAAAATATCTCAAGCGAGA-CAAAATTTGTTTAGAGAGAAACAATCTCAAA
15085824 GG
65 GG
15085826 T
1 T
15085827 GGCATATAGT
Statistics
Matches: 104, Mismatches: 28, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
66 12 0.12
67 91 0.88
68 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (66 bp):
TTTATGTTTCAAGAGAAAATATCTCAAGCGAGACAAAATTTGTTTAGAGAGAAACAATCTCAAAG
G
Done.