Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 62
Found at i:6703134 original size:41 final size:41
Alignment explanation
Indices: 6703048--6703182 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
6703038 GAATAAGTAA
** *
6703048 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTACT
6703089 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
* * ** * *
6703130 ATCGCAATGCGATAAT-ACAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTTACT
*
6703171 TTCGCAACGCGA
1 ATCGCAACGCGA
6703183 TACTGACTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 5 0.06
41 74 0.91
42 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
Found at i:6703135 original size:20 final size:20
Alignment explanation
Indices: 6703110--6703203 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
6703100 AATTGGGAAA
*
6703110 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTTACT
* * *
6703130 ATCGCAATGCGATA-ATACAAA
1 ATCGCAACGCGATACTTAC--T
*
6703151 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTTACT
* *
6703171 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTTACT
*
6703191 TTCGCAACGCGAT
1 ATCGCAACGCGAT
6703204 TTACATAATC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 44 0.71
21 12 0.19
22 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTTACT
Found at i:6703419 original size:22 final size:22
Alignment explanation
Indices: 6703391--6703434 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6703381 CACTCTCTCA
6703391 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
6703413 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
6703435 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:6704977 original size:18 final size:18
Alignment explanation
Indices: 6704956--6705000 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
6704946 TCCACTTCGG
* *
6704956 GAGCCATCACCTCGCCCA
1 GAGCCATCACCCCACCCA
*
6704974 GAGCTATCACCCCACCCA
1 GAGCCATCACCCCACCCA
6704992 GAGCCATCA
1 GAGCCATCA
6705001 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.47, G:0.16, T:0.11
Consensus pattern (18 bp):
GAGCCATCACCCCACCCA
Found at i:6705546 original size:14 final size:14
Alignment explanation
Indices: 6705527--6705584 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6705517 ATGCGAAATG
6705527 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
6705541 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
6705557 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
6705573 AAAATCGCAACG
1 AAAATCGCAACG
6705585 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:6705569 original size:32 final size:33
Alignment explanation
Indices: 6705511--6705601 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
6705501 GGAAATGGCT
*
6705511 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6705544 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6705576 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
6705602 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.57
33 24 0.43
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:6705595 original size:19 final size:19
Alignment explanation
Indices: 6705473--6705606 Score: 92
Period size: 19 Copynumber: 7.6 Consensus size: 19
6705463 TAGTTTACTT
* **
6705473 TCGCAACACGAAATGACTA
1 TCGCAACGCGAAATGAAAA
***
6705492 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
6705512 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
6705531 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
6705545 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
*
6705563 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
6705577 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
6705596 TCGCAATGCGA
1 TCGCAACGCGA
6705607 TTTGTGTTTC
Statistics
Matches: 92, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
14 20 0.22
15 1 0.01
16 6 0.07
17 2 0.02
18 11 0.12
19 35 0.38
20 17 0.18
ACGTcount: A:0.43, C:0.24, G:0.21, T:0.13
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:6705637 original size:14 final size:14
Alignment explanation
Indices: 6705618--6705675 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
6705608 TTGTGTTTCG
6705618 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
6705632 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
6705648 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
6705664 CATTGCGATTTT
1 CGTTGCGATTTT
6705676 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:6705652 original size:32 final size:33
Alignment explanation
Indices: 6705613--6705691 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
6705603 GCGATTTGTG
*
6705613 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
6705645 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
*
6705678 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
6705692 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
Found at i:6705688 original size:19 final size:19
Alignment explanation
Indices: 6705664--6705722 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
6705654 GCGATTTTGT
**
6705664 CATTGCGATTTTCATTTCG
1 CATTGCGATAGTCATTTCG
*
6705683 CATTGCGATAGCCATTTCCG
1 CATTGCGATAGTCATTT-CG
*
6705703 CGTTGCGATAGTCATTTCG
1 CATTGCGATAGTCATTTCG
6705722 C
1 C
6705723 GTTGTGATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.37
Consensus pattern (19 bp):
CATTGCGATAGTCATTTCG
Found at i:6705725 original size:19 final size:19
Alignment explanation
Indices: 6705675--6705726 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
6705665 ATTGCGATTT
*
6705675 TCATTTCGCATTGCGATAG
1 TCATTTCGCGTTGCGATAG
*
6705694 CCATTTCCGCGTTGCGATAG
1 TCATTT-CGCGTTGCGATAG
6705714 TCATTTCGCGTTG
1 TCATTTCGCGTTG
6705727 TGATTTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (19 bp):
TCATTTCGCGTTGCGATAG
Found at i:6707727 original size:19 final size:19
Alignment explanation
Indices: 6707705--6707865 Score: 233
Period size: 19 Copynumber: 8.7 Consensus size: 19
6707695 CAGACTATCT
* *
6707705 ATCGCAACGCGAAATGGAA
1 ATCGCAATGCGAAATGAAA
6707724 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6707743 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6707762 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6707781 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
***
6707800 ATCGCAATGCGAAATGGTT
1 ATCGCAATGCGAAATGAAA
6707819 ATCGCAA--CG--A-GAAA
1 ATCGCAATGCGAAATGAAA
6707833 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6707852 ATCGCAATGAGAAA
1 ATCGCAATGCGAAA
6707866 ATCGCAATGC
Statistics
Matches: 128, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
14 8 0.06
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 114 0.89
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:6707953 original size:20 final size:20
Alignment explanation
Indices: 6707896--6707953 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
6707886 TCGCATTGCG
* *
6707896 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAGCC
6707916 ATTTTCGCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
6707936 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
6707954 TCAAATGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:6709003 original size:24 final size:24
Alignment explanation
Indices: 6708976--6709029 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
6708966 GTATTCGAAA
* *
6708976 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
6709000 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
6709024 TTTGAT
1 TTTGAT
6709030 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:6711411 original size:19 final size:19
Alignment explanation
Indices: 6711387--6711517 Score: 85
Period size: 19 Copynumber: 7.7 Consensus size: 19
6711377 GGAAATTACT
*
6711387 ATCGCAATGCGAAGTGAAA
1 ATCGCAATGCGAAATGAAA
*
6711406 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
6711420 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
6711439 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
6711453 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
6711472 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
6711486 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6711505 ATCGCAACGCGAA
1 ATCGCAATGCGAA
6711518 TTTAATTTCG
Statistics
Matches: 83, Mismatches: 14, Indels: 30
0.65 0.11 0.24
Matches are distributed among these distances:
14 27 0.33
15 2 0.02
16 6 0.07
17 6 0.07
18 3 0.04
19 39 0.47
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:6711429 original size:33 final size:33
Alignment explanation
Indices: 6711387--6711513 Score: 193
Period size: 33 Copynumber: 3.8 Consensus size: 33
6711377 GGAAATTACT
*
6711387 ATCGCAATGCGAAGTGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
6711420 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
6711452 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
6711486 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
6711514 CGAATTTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
32 1 0.01
33 82 0.98
34 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6711494 original size:66 final size:66
Alignment explanation
Indices: 6711388--6711520 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
6711378 GAAATTACTA
* *
6711388 TCGCAATGCGAAGTGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
6711453 T
66 T
*
6711454 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
6711519 T
66 T
6711520 T
1 T
6711521 AATTTCGCGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:6711535 original size:19 final size:20
Alignment explanation
Indices: 6711513--6711555 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6711503 AAATCGCAAC
6711513 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
6711532 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
6711552 GCGA
1 GCGA
6711556 TTCCCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:6711716 original size:14 final size:14
Alignment explanation
Indices: 6711697--6711733 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
6711687 CATCAATTAA
6711697 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
6711711 ACAAATCACCTTTT
1 ACAAATCAACTTTT
6711725 ACAAATCAA
1 ACAAATCAA
6711734 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:6713156 original size:21 final size:21
Alignment explanation
Indices: 6713090--6713156 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
6713080 GTGAATCGGG
*
6713090 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
6713110 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
6713132 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
6713153 CTCT
1 CTCT
6713157 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:6713175 original size:42 final size:41
Alignment explanation
Indices: 6713090--6713212 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
6713080 GTGAATCGGG
* * * * *
6713090 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
6713132 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
6713174 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
6713213 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:6715255 original size:39 final size:38
Alignment explanation
Indices: 6715212--6715362 Score: 168
Period size: 39 Copynumber: 4.1 Consensus size: 38
6715202 TCTTTTGGTT
* *
6715212 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** * *
6715251 GAAATGACTATCGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
* *
6715284 GAAATGAAAATCGCAACCGCGAAATAAAAATCCCAACGC
1 GAAATGAAAATCGCAA-CGCGAAATGAAAATCGCAACGC
*
6715323 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
6715361 GA
1 GA
6715363 TTTTGGTTTC
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
33 26 0.28
34 2 0.02
35 1 0.01
38 22 0.24
39 41 0.45
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:6715263 original size:19 final size:19
Alignment explanation
Indices: 6715212--6715362 Score: 168
Period size: 19 Copynumber: 8.1 Consensus size: 19
6715202 TCTTTTGGTT
*
6715212 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
6715231 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
** *
6715251 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
6715269 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6715284 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
* *
6715304 GAAATAAAAATCCCAACGC
1 GAAATGAAAATCGCAACGC
6715323 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
6715342 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
6715361 GA
1 GA
6715363 TTTTGGTTTC
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
14 10 0.09
15 2 0.02
18 2 0.02
19 64 0.57
20 34 0.30
ACGTcount: A:0.45, C:0.23, G:0.21, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6715391 original size:19 final size:19
Alignment explanation
Indices: 6715358--6715438 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
6715348 AAAATCGCAA
**
6715358 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
6715377 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
6715396 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
6715410 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
6715430 TGCGATTTT
1 TGCGATTTT
6715439 CATTCTCGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 23 0.46
20 11 0.22
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:6716050 original size:20 final size:20
Alignment explanation
Indices: 6715957--6716050 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
6715947 CGCTATGTAA
* *
6715957 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTAAGT
* *
6715977 ATCGCGTTGTGAAAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
* * *
6715997 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTAAGT
*
6716018 ATCGCATTGCGATAGTAAGT
1 ATCGCGTTGCGATAGTAAGT
*
6716038 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
6716051 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.05
20 43 0.72
21 12 0.20
22 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTAAGT
Found at i:6716068 original size:21 final size:21
Alignment explanation
Indices: 6716039--6716109 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
6716029 ATAGTAAGTA
6716039 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
6716060 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
6716080 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
6716101 TCGCGTTGC
1 TCGCATTGC
6716110 TTAAGCCAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 16 0.40
21 24 0.60
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.39
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:6716069 original size:41 final size:41
Alignment explanation
Indices: 6715978--6716109 Score: 133
Period size: 41 Copynumber: 3.2 Consensus size: 41
6715968 AAAGTCAGTA
* * * * ** *
6715978 TCGCGTTGTGAAAGTAAGTATCTCGTTGCGATTTT-GTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
*
6716018 ATCGCATTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
6716060 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
6716101 TCGCGTTGC
1 TCGCGTTGC
6716110 TTAAGCCAGT
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
40 4 0.05
41 71 0.92
42 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:6718431 original size:29 final size:30
Alignment explanation
Indices: 6718386--6718491 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 30
6718376 AACCATTAGG
* *
6718386 GGACCAAAATAGATAAAACAGAAACTTATA
1 GGACTAAAATAGATAAAACAGAAACTTAAA
* *
6718416 GGGCTAAAATAG-TAAAACAGAAAGTTAAA
1 GGACTAAAATAGATAAAACAGAAACTTAAA
* * *
6718445 GGACTGAAATAGCAT-AAACATG-AATTTACA
1 GGACTAAAATAG-ATAAAACA-GAAACTTAAA
*
6718475 GGAGTAAAATA-ATAAAA
1 GGACTAAAATAGATAAAA
6718492 ACAATCATTC
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
28 2 0.03
29 28 0.45
30 30 0.48
31 2 0.03
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (30 bp):
GGACTAAAATAGATAAAACAGAAACTTAAA
Found at i:6719863 original size:3 final size:3
Alignment explanation
Indices: 6719857--6719920 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
6719847 ATGTATATTA
6719857 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6719905 AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT A
6719921 TTAAATCGAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6720580 original size:20 final size:20
Alignment explanation
Indices: 6720555--6720597 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
6720545 AAAAGAACCT
*
6720555 AATGTGGCTCTTTGATCAAC
1 AATGTGGCCCTTTGATCAAC
6720575 AATGTGGCCCTTTGATCAAC
1 AATGTGGCCCTTTGATCAAC
6720595 AAT
1 AAT
6720598 TTATGTCGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (20 bp):
AATGTGGCCCTTTGATCAAC
Found at i:6724960 original size:29 final size:30
Alignment explanation
Indices: 6724915--6725020 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 30
6724905 AACCATTAGG
* *
6724915 GGACCAAAATAGATAAAACAGAAACTTATA
1 GGACTAAAATAGATAAAACAGAAACTTAAA
* *
6724945 GGGCTAAAATAG-TAAAACAGAAAGTTAAA
1 GGACTAAAATAGATAAAACAGAAACTTAAA
* * *
6724974 GGACTGAAATAGCAT-AAACATG-AATTTACA
1 GGACTAAAATAG-ATAAAACA-GAAACTTAAA
*
6725004 GGAGTAAAATA-ATAAAA
1 GGACTAAAATAGATAAAA
6725021 ACAATCATTC
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
28 2 0.03
29 28 0.45
30 30 0.48
31 2 0.03
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (30 bp):
GGACTAAAATAGATAAAACAGAAACTTAAA
Found at i:6726388 original size:3 final size:3
Alignment explanation
Indices: 6726382--6726444 Score: 117
Period size: 3 Copynumber: 20.7 Consensus size: 3
6726372 ATGTATATTA
6726382 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
6726428 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
6726445 ATTAAATCGA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 56 0.95
4 3 0.05
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6731272 original size:18 final size:19
Alignment explanation
Indices: 6731234--6731274 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6731224 GAATATAAGC
6731234 ATGTGTTTGATATGAGTAT
1 ATGTGTTTGATATGAGTAT
* *
6731253 ATGTGTTTGTTAT-TGTAT
1 ATGTGTTTGATATGAGTAT
6731271 ATGT
1 ATGT
6731275 TACATGACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (19 bp):
ATGTGTTTGATATGAGTAT
Found at i:6731786 original size:21 final size:21
Alignment explanation
Indices: 6731748--6731787 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6731738 TTCTATGTGG
* *
6731748 TCCTTTGGGAGATATATGTAA
1 TCCTTTGGAACATATATGTAA
*
6731769 TCCTTTGGAACATGTATGT
1 TCCTTTGGAACATATATGT
6731788 GGGCCTTTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (21 bp):
TCCTTTGGAACATATATGTAA
Found at i:6733858 original size:19 final size:20
Alignment explanation
Indices: 6733826--6733869 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
6733816 ATATCATTTA
6733826 ATTAATATTGT-AAAT-TAT
1 ATTAATATTGTAAAATATAT
*
6733844 ATTAATTATTTTAAAATATAT
1 ATTAA-TATTGTAAAATATAT
6733865 ATTAA
1 ATTAA
6733870 AAACCTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 5 0.23
20 4 0.18
21 8 0.36
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTAATATTGTAAAATATAT
Found at i:6734362 original size:21 final size:21
Alignment explanation
Indices: 6734297--6734362 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
6734287 AATTTTACTT
6734297 TTAATAA--AATTATAATTAAA
1 TTAATAATTAATT-TAATTAAA
*
6734317 -TAATAATT-TTTTAATTGAAA
1 TTAATAATTAATTTAATT-AAA
* *
6734337 ATAATAATTAATTTAAGTAAA
1 TTAATAATTAATTTAATTAAA
6734358 TTAAT
1 TTAAT
6734363 TTATTTAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 11 0.30
20 5 0.14
21 15 0.41
22 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (21 bp):
TTAATAATTAATTTAATTAAA
Found at i:6743476 original size:12 final size:13
Alignment explanation
Indices: 6743459--6743491 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6743449 ATGGGAAAAC
*
6743459 TTTGAAAACTAT-
1 TTTGAAAACAATG
6743471 TTTGAAAACAATG
1 TTTGAAAACAATG
6743484 TTTGAAAA
1 TTTGAAAA
6743492 ATCATAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.36
Consensus pattern (13 bp):
TTTGAAAACAATG
Found at i:6759860 original size:17 final size:18
Alignment explanation
Indices: 6759822--6759867 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
6759812 GAAAAAGGTC
*
6759822 TTGTTATAAATTTTATTT
1 TTGTTATAAATTTTAGTT
6759840 TTGTTATAAATTTT-GTT
1 TTGTTATAAATTTTAGTT
6759857 TTGTTATAAAT
1 TTGTTATAAAT
6759868 ATAGAATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 13 0.48
18 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (18 bp):
TTGTTATAAATTTTAGTT
Found at i:6760433 original size:2 final size:2
Alignment explanation
Indices: 6760428--6760481 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
6760418 ATAGAATTTA
6760428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6760470 AT AT AT AT AT AT
1 AT AT AT AT AT AT
6760482 GCTAATAAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6762239 original size:16 final size:16
Alignment explanation
Indices: 6762211--6762251 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
6762201 AATTTATCAA
6762211 AATTATAAAATAT-TT
1 AATTATAAAATATATT
*
6762226 AATATATAATATATATT
1 AAT-TATAAAATATATT
6762243 AATTATAAA
1 AATTATAAA
6762252 TTTTGGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 3 0.14
16 14 0.64
17 5 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATTATAAAATATATT
Found at i:6763330 original size:24 final size:25
Alignment explanation
Indices: 6763288--6763339 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
6763278 TTTATTTTCT
*
6763288 TTATATAATAATATCATATATTTAA
1 TTATATAATAATATCATATATTAAA
* *
6763313 TTAT-TAATAATTTTATATATTAAA
1 TTATATAATAATATCATATATTAAA
6763337 TTA
1 TTA
6763340 AACTATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TTATATAATAATATCATATATTAAA
Found at i:6763802 original size:20 final size:20
Alignment explanation
Indices: 6763777--6763849 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
6763767 TTTTCCTAAT
6763777 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
6763797 TCGCAATGTGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
6763817 TCGCAATGCGAATATGTAGA
1 TCGCAATGCGAATACGTAAA
*
6763837 TCGCAACGCGAAT
1 TCGCAATGCGAAT
6763850 CTGACTATCG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:6764076 original size:22 final size:22
Alignment explanation
Indices: 6764051--6764103 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
6764041 ACATCCTTCT
6764051 CCATCTCCGACGAAATCAGTCC
1 CCATCTCCGACGAAATCAGTCC
* *
6764073 CCATCTCCGACGATATCAGTCT
1 CCATCTCCGACGAAATCAGTCC
6764095 CCATCTCCG
1 CCATCTCCG
6764104 GTGAAACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.23, C:0.42, G:0.13, T:0.23
Consensus pattern (22 bp):
CCATCTCCGACGAAATCAGTCC
Found at i:6764536 original size:20 final size:20
Alignment explanation
Indices: 6764488--6764538 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
6764478 TCAAATTCAC
**
6764488 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
6764508 GTTGCGATTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
6764528 GTTGCGATTTT
1 GTTGCGATTTT
6764539 AAGTTTCAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.14, G:0.24, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:6764545 original size:20 final size:20
Alignment explanation
Indices: 6764502--6764545 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
6764492 CGATAGTCAT
* *
6764502 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
6764522 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
6764542 TTTC
1 TTTC
6764546 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:6766458 original size:20 final size:20
Alignment explanation
Indices: 6766433--6766589 Score: 108
Period size: 20 Copynumber: 8.5 Consensus size: 20
6766423 ATAATAGTTT
6766433 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
*
6766453 ACTATCGCAACGCGAAAATG
1 ACTATCGCAATGCGAAAATG
* *
6766473 ACTATCGTAA--CGAGAA--
1 ACTATCGCAATGCGAAAATG
6766489 A--ATCGCAATGCG-AAATG
1 ACTATCGCAATGCGAAAATG
**
6766506 AAAATCGCAA--C-AACAA--
1 ACTATCGCAATGCGAA-AATG
* * *
6766522 A--ATCGTAACGCAAAAATG
1 ACTATCGCAATGCGAAAATG
6766540 ACTATCGCAATGCGAAAATG
1 ACTATCGCAATGCGAAAATG
**
6766560 ACTATCGCAATGCGAATTTG
1 ACTATCGCAATGCGAAAATG
*
6766580 ACTATTGCAA
1 ACTATCGCAA
6766590 CGAAATAATC
Statistics
Matches: 110, Mismatches: 12, Indels: 30
0.72 0.08 0.20
Matches are distributed among these distances:
14 12 0.11
15 2 0.02
16 7 0.06
17 5 0.05
18 8 0.07
19 7 0.06
20 69 0.63
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (20 bp):
ACTATCGCAATGCGAAAATG
Found at i:6766502 original size:34 final size:34
Alignment explanation
Indices: 6766456--6766610 Score: 118
Period size: 34 Copynumber: 4.4 Consensus size: 34
6766446 GAAAATGACT
* *
6766456 ATCGCAACGCGAAAATGACTATCGTAACGAGAA-A
1 ATCGCAATGCGAAAATGACTATCGCAACGA-AATA
** *
6766490 ATCGCAATGCG-AAATGAAAATCGCAAC-AACAAA
1 ATCGCAATGCGAAAATGACTATCGCAACGAA-ATA
* * *
6766523 ATCGTAACGCAAAAATGACTATCGCAATGCGAAAATGA
1 ATCGCAATGCGAAAATGACTATCGCAA--CG-AAAT-A
** *
6766561 CTATCGCAATGCGAATTTGACTATTGCAACGAAATA
1 --ATCGCAATGCGAAAATGACTATCGCAACGAAATA
6766597 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
6766611 TGAAAATCGC
Statistics
Matches: 94, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
31 1 0.01
32 2 0.02
33 22 0.23
34 36 0.38
36 2 0.02
37 5 0.05
38 5 0.05
40 21 0.22
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (34 bp):
ATCGCAATGCGAAAATGACTATCGCAACGAAATA
Found at i:6766642 original size:20 final size:20
Alignment explanation
Indices: 6766617--6766688 Score: 108
Period size: 20 Copynumber: 3.6 Consensus size: 20
6766607 GAAATGAAAA
6766617 TCGCATTGCGATAGTCAAAT
1 TCGCATTGCGATAGTCAAAT
*
6766637 TCGCATTGCAATAGTCAAAT
1 TCGCATTGCGATAGTCAAAT
**
6766657 TCGCATTGCGATAGTCATTT
1 TCGCATTGCGATAGTCAAAT
*
6766677 TCGCGTTGCGAT
1 TCGCATTGCGAT
6766689 TTTAAGTTGC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (20 bp):
TCGCATTGCGATAGTCAAAT
Found at i:6768823 original size:34 final size:33
Alignment explanation
Indices: 6768735--6768830 Score: 138
Period size: 33 Copynumber: 2.8 Consensus size: 33
6768725 AAAACAGACT
* ** *
6768735 ATCGCAACGCGGAAATGACTATCACAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
6768769 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
6768802 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
6768831 CGAAACTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6768826 original size:20 final size:19
Alignment explanation
Indices: 6768768--6768835 Score: 74
Period size: 20 Copynumber: 3.8 Consensus size: 19
6768758 ACAACGAGAG
6768768 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
6768787 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
6768801 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
6768821 AATCGCAACGCGAAA
1 AATCGCAATGCGAAA
6768836 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
14 10 0.25
15 1 0.03
16 2 0.05
17 2 0.05
19 12 0.30
20 13 0.32
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:6768907 original size:33 final size:34
Alignment explanation
Indices: 6768845--6768920 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 34
6768835 ACTAAATTCG
* *
6768845 CGTTGCGATTTTCATTTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTGTCGCATTACGATTCTCT
6768879 CGTTGCGATTTTCA-TGTCGCATTACGATTCTCT
1 CGTTGCGATTTTCATTGTCGCATTACGATTCTCT
6768912 CGTTGCGAT
1 CGTTGCGAT
6768921 AGTCATTTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 26 0.65
34 14 0.35
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (34 bp):
CGTTGCGATTTTCATTGTCGCATTACGATTCTCT
Found at i:6768937 original size:20 final size:20
Alignment explanation
Indices: 6768912--6769000 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
6768902 ACGATTCTCT
6768912 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
* *
6768932 CGTTGCTATAGTCAATTCCG
1 CGTTGCGATAGTCATTTCCG
6768952 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
6768972 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
6768992 CGTTGCGAT
1 CGTTGCGAT
6769001 TTCCGCGTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:6771444 original size:24 final size:24
Alignment explanation
Indices: 6771410--6771463 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
6771400 CTGAAAAATC
6771410 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
6771434 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
6771458 ATCAAA
1 ATCAAA
6771464 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:6771477 original size:24 final size:24
Alignment explanation
Indices: 6771410--6771477 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
6771400 CTGAAAAATC
* * *
6771410 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
** *
6771434 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
6771458 ATCAAATTTCGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
6771478 TAGTACTCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:6772407 original size:20 final size:20
Alignment explanation
Indices: 6772305--6772398 Score: 170
Period size: 20 Copynumber: 4.7 Consensus size: 20
6772295 AAATTCAGTA
*
6772305 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCTCG
6772325 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
*
6772345 TTGCAATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
6772365 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCTCG
6772385 TTGCGATAGTCAGA
1 TTGCGATAGTCAGA
6772399 TTCGCGTTGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCTCG
Found at i:6772421 original size:20 final size:20
Alignment explanation
Indices: 6772398--6772510 Score: 199
Period size: 20 Copynumber: 5.7 Consensus size: 20
6772388 CGATAGTCAG
* *
6772398 ATTCGCGTTGTGATTTACGT
1 ATTCGCATTGCGATTTACGT
6772418 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
6772438 ATTCGCATTGCGATTTAAGT
1 ATTCGCATTGCGATTTACGT
6772458 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
6772478 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
6772498 ATTCGCATTGCGA
1 ATTCGCATTGCGA
6772511 ATTAGGAAAA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 89 1.00
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:6772429 original size:60 final size:60
Alignment explanation
Indices: 6772304--6772491 Score: 156
Period size: 60 Copynumber: 3.1 Consensus size: 60
6772294 GAAATTCAGT
* * * * * *
6772304 ATTGCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCTCGTTGCAATAGT-CAGAATCTCG-
1 ATTGCGATAGTCAGAATCTCGTTGCGATAGTCAGATTCGCGTTGCGAT-TTAC-GTAT-TCGC
*
6772365 -TTGCGATAGTCAGAATCTCGTTGCGATAGTCAGATTCGCGTTGTGATTTACGTATTCGC
1 ATTGCGATAGTCAGAATCTCGTTGCGATAGTCAGATTCGCGTTGCGATTTACGTATTCGC
* * * * *
6772424 ATTGCGAT--TTACGTAT-TCGCATTGCGAT-TTAAGTATTCGCATTGCGATTTACGTATTCGC
1 ATTGCGATAGTCA-GAATCTCG--TTGCGATAGTCAG-ATTCGCGTTGCGATTTACGTATTCGC
6772484 ATTGCGAT
1 ATTGCGAT
6772492 TTACGTATTC
Statistics
Matches: 107, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
58 8 0.07
59 10 0.09
60 89 0.83
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (60 bp):
ATTGCGATAGTCAGAATCTCGTTGCGATAGTCAGATTCGCGTTGCGATTTACGTATTCGC
Found at i:6774502 original size:17 final size:19
Alignment explanation
Indices: 6774467--6774505 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
6774457 TAATTGAAAG
6774467 ATTAAAATTATTAGATTAA
1 ATTAAAATTATTAGATTAA
6774486 ATTAAAATTA-T-GATTAA
1 ATTAAAATTATTAGATTAA
6774503 ATT
1 ATT
6774506 GATAGAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 9 0.45
18 1 0.05
19 10 0.50
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
ATTAAAATTATTAGATTAA
Found at i:6780574 original size:63 final size:63
Alignment explanation
Indices: 6780437--6780574 Score: 177
Period size: 63 Copynumber: 2.2 Consensus size: 63
6780427 TGGACGTGTC
* * * * * * *
6780437 TAATGTACATGGAGCTATGGGTGCTAGTTGTCAAAGCAATAACTTTGTTGGGGCCACTCCTAA
1 TAATGAACATGAAGCCATGGATGATAATTGTCAAAGCAATAACTTTGTTGGGGCCACACCTAA
** * *
6780500 TAATGCGCATGAAGCCATGGATGATAATTGTCAAAGCAATAACTTTGTTGGGGCCACACGTGA
1 TAATGAACATGAAGCCATGGATGATAATTGTCAAAGCAATAACTTTGTTGGGGCCACACCTAA
6780563 TAATGAACATGA
1 TAATGAACATGA
6780575 GGTTACTAGC
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (63 bp):
TAATGAACATGAAGCCATGGATGATAATTGTCAAAGCAATAACTTTGTTGGGGCCACACCTAA
Found at i:6784976 original size:43 final size:45
Alignment explanation
Indices: 6784920--6785010 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 45
6784910 GTTCGCAACA
*
6784920 TTTGTTAACGACAAACGACGTAATAGGTAACGATATTTAGCGGCG
1 TTTGTTAACGACAAACGACGCAATAGGTAACGATATTTAGCGGCG
* *** *
6784965 TTTG-TAA-GACAAACGCCGCAATAGGTGTTGATGTTTAGCGGCG
1 TTTGTTAACGACAAACGACGCAATAGGTAACGATATTTAGCGGCG
6785008 TTT
1 TTT
6785011 TCCCATAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
43 33 0.82
44 3 0.08
45 4 0.10
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (45 bp):
TTTGTTAACGACAAACGACGCAATAGGTAACGATATTTAGCGGCG
Found at i:6785137 original size:43 final size:43
Alignment explanation
Indices: 6785089--6785208 Score: 141
Period size: 45 Copynumber: 2.7 Consensus size: 43
6785079 TGTTGAGATT
* *
6785089 TAGCGGCATTTTTTGATACAAACGCCGCTAAAGGTCTGGTATA
1 TAGCGGCATTTTTTGTTACAAACGCCGCTAAAGGTATGGTATA
* * * * *
6785132 TAGCGGCATTTTTATCCTTAAAAACGCTGCTAAATGTATTGTATA
1 TAGCGGCATTTTT-T-GTTACAAACGCCGCTAAAGGTATGGTATA
* *
6785177 TTGTGGCATTTTTTGTTACAAACGCCGCTAAA
1 TAGCGGCATTTTTTGTTACAAACGCCGCTAAA
6785209 TAACATAATA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 28 0.44
44 2 0.03
45 33 0.52
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35
Consensus pattern (43 bp):
TAGCGGCATTTTTTGTTACAAACGCCGCTAAAGGTATGGTATA
Found at i:6785536 original size:21 final size:21
Alignment explanation
Indices: 6785512--6785596 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
6785502 GCTGATATAT
6785512 TGCTTCTCTCTGTGCTGCCGC
1 TGCTTCTCTCTGTGCTGCCGC
* *
6785533 TGCTTTTCTTTGTGCTGCCGC
1 TGCTTCTCTCTGTGCTGCCGC
* * *
6785554 TGCTTTTCTTTGTGCTGCCAC
1 TGCTTCTCTCTGTGCTGCCGC
* * *
6785575 TACTTCTCTCTCTGCTTCCGC
1 TGCTTCTCTCTGTGCTGCCGC
6785596 T
1 T
6785597 TCTACTCTGG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.02, C:0.34, G:0.19, T:0.45
Consensus pattern (21 bp):
TGCTTCTCTCTGTGCTGCCGC
Found at i:6785604 original size:21 final size:21
Alignment explanation
Indices: 6785580--6785635 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
6785570 GCCACTACTT
* *
6785580 CTCTCTCTGCTTCCGCTTCTA
1 CTCTCTCTACTTCCGCTGCTA
* * *
6785601 CTCTGGT-TTCTTCCGCTGCTG
1 CTCT-CTCTACTTCCGCTGCTA
6785622 CTCTCTCTACTTCC
1 CTCTCTCTACTTCC
6785636 CTTGCTTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.04, C:0.41, G:0.12, T:0.43
Consensus pattern (21 bp):
CTCTCTCTACTTCCGCTGCTA
Found at i:6790101 original size:178 final size:181
Alignment explanation
Indices: 6789802--6790161 Score: 699
Period size: 178 Copynumber: 2.0 Consensus size: 181
6789792 GAGGCAAATT
6789802 GAATGGAACAAGTACAACAGGCCAAGTACTATATGAAGTACTCATGATTTTGAATGGATTAAACC
1 GAATGGAACAAGTACAACAGGCCAAGTACTATATGAAGTACTCATGATTTTGAATGGATTAAACC
6789867 CATCAGTTGCAAGACCGAGCCTGACATTTCAAGGACCTCTCGTAAAACGTGGATACTTGTTGTCA
66 CATCAGTTGCAAGACCGAGCCTGACATTTCAAGGACCTCTCGTAAAACGTGGATACTTGTTGTCA
6789932 AATGACTTCCAAGCTAAAG-ATCCACAGG-TGCCGTAAT-ATCCGTCATCG
131 AATGACTTCCAAGCTAAAGAATCCACAGGATGCCGTAATAATCCGTCATCG
6789980 GAATGGAACAAGTACAACAGGCCAAGTACTATATGAAGTACTCATGATTTTGAATGGATTAAACC
1 GAATGGAACAAGTACAACAGGCCAAGTACTATATGAAGTACTCATGATTTTGAATGGATTAAACC
6790045 CATCAGTTGCAAGACCGAGCCTGACATTTCAAGGACCTCTCGTAAAACGTGGATACTTGTTGTCA
66 CATCAGTTGCAAGACCGAGCCTGACATTTCAAGGACCTCTCGTAAAACGTGGATACTTGTTGTCA
6790110 AATGACTTCCAAGCTAAAGAATCCACAGGATGCCGTAATAATCCGTCATCG
131 AATGACTTCCAAGCTAAAGAATCCACAGGATGCCGTAATAATCCGTCATCG
6790161 G
1 G
6790162 TTCTGCCATC
Statistics
Matches: 179, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
178 149 0.83
179 9 0.05
180 9 0.05
181 12 0.07
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (181 bp):
GAATGGAACAAGTACAACAGGCCAAGTACTATATGAAGTACTCATGATTTTGAATGGATTAAACC
CATCAGTTGCAAGACCGAGCCTGACATTTCAAGGACCTCTCGTAAAACGTGGATACTTGTTGTCA
AATGACTTCCAAGCTAAAGAATCCACAGGATGCCGTAATAATCCGTCATCG
Found at i:6791248 original size:17 final size:17
Alignment explanation
Indices: 6791226--6791270 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
6791216 AATCACTCCT
6791226 AAATTATAAAACTTTTA
1 AAATTATAAAACTTTTA
6791243 AAATTATAAAACTTTTA
1 AAATTATAAAACTTTTA
6791260 AAATTATAAAA
1 AAATTATAAAA
6791271 TGTTATGGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTATAAAACTTTTA
Found at i:6791269 original size:8 final size:8
Alignment explanation
Indices: 6791226--6791271 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
6791216 AATCACTCCT
6791226 AAATTATA
1 AAATTATA
*
6791234 AAACTTTTA
1 AAA-TTATA
6791243 AAATTATA
1 AAATTATA
*
6791251 AAACTTTTA
1 AAA-TTATA
6791260 AAATTATA
1 AAATTATA
6791268 AAAT
1 AAAT
6791272 GTTATGGGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 18 0.56
9 14 0.44
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (8 bp):
AAATTATA
Found at i:6803737 original size:20 final size:19
Alignment explanation
Indices: 6803710--6803770 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 19
6803700 CATTTTGGTA
6803710 CAGAGGGAATCGATACCCC
1 CAGAGGGAATCGATACCCC
*
6803729 CATGAGGGAATCGATTCCCCC
1 CA-GAGGGAATCGA-TACCCC
*
6803750 CACAGGGGAATCGATACCCC
1 CAGA-GGGAATCGATACCCC
6803770 C
1 C
6803771 CTGGGGTTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.06
20 18 0.50
21 16 0.44
ACGTcount: A:0.28, C:0.34, G:0.25, T:0.13
Consensus pattern (19 bp):
CAGAGGGAATCGATACCCC
Found at i:6803751 original size:21 final size:20
Alignment explanation
Indices: 6803710--6803771 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
6803700 CATTTTGGTA
*
6803710 CAGAGGGAATCGA-TACCCC
1 CAGAGGGAATCGATTCCCCC
6803729 CATGAGGGAATCGATTCCCCC
1 CA-GAGGGAATCGATTCCCCC
* *
6803750 CACAGGGGAATCGATACCCCC
1 CAGA-GGGAATCGATTCCCCC
6803771 C
1 C
6803772 TGGGGTTCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 2 0.05
20 12 0.32
21 23 0.62
ACGTcount: A:0.27, C:0.35, G:0.24, T:0.13
Consensus pattern (20 bp):
CAGAGGGAATCGATTCCCCC
Found at i:6806572 original size:20 final size:20
Alignment explanation
Indices: 6806545--6806595 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
6806535 CACTTAGGGA
*
6806545 ACCGATTCCCCTTAAGGGTT
1 ACCGATTCCCCTTAAGGGGT
*
6806565 ATCGATTCCCCTTAAGGGGT
1 ACCGATTCCCCTTAAGGGGT
6806585 ACCGATTCCCC
1 ACCGATTCCCC
6806596 CACGCTCCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (20 bp):
ACCGATTCCCCTTAAGGGGT
Found at i:6815869 original size:5 final size:5
Alignment explanation
Indices: 6815855--6815894 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
6815845 GTTCTTCAAC
* *
6815855 TTTC- TTTCT TTTCT TTTCT TTTCT TTTAT TTGCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT T
6815895 CTTTTTGAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTCT
Found at i:6819927 original size:5 final size:5
Alignment explanation
Indices: 6819913--6819947 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
6819903 GTTCTTCAAC
*
6819913 TTTC- TTTCT TTTCT TTTCT TTTCT TTGCT TTTCT T
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT T
6819948 CTTTTTGAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (5 bp):
TTTCT
Found at i:6819954 original size:15 final size:14
Alignment explanation
Indices: 6819913--6819954 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
6819903 GTTCTTCAAC
6819913 TTTCTTTCTTTT-CT
1 TTTCTTT-TTTTGCT
6819927 TTTCTTTTCTTTGCT
1 TTTCTTTT-TTTGCT
6819942 TTTCTTCTTTTTG
1 TTTCTT-TTTTTG
6819955 AGTGCTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
15 12 0.48
16 2 0.08
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (14 bp):
TTTCTTTTTTTGCT
Found at i:6825967 original size:94 final size:95
Alignment explanation
Indices: 6825830--6826028 Score: 271
Period size: 94 Copynumber: 2.1 Consensus size: 95
6825820 TATTGATAGG
* * *
6825830 GTATTGATACTAAAAGGAAAGCATTGATACCATGGATTCCAGAATGCCA-AAATGGTAT-GAATA
1 GTATCGATACTAAAAGGAAAGCATTGATACCATGAATTACAGAATG-CAGAAATGGTATCG-ATA
*
6825893 CTGAAA-GTGGTACTGGTACCATAGTATAGAA
64 CTGAAAGGGGGTACTGGTACCATAGTATAGAA
* * *
6825924 GTATCGATACTGAAA-GAAAGGTATTGATACCATGAATTACAGAATGTAGAAATGGTATCGATAC
1 GTATCGATACTAAAAGGAAA-GCATTGATACCATGAATTACAGAATGCAGAAATGGTATCGATAC
*
6825988 TGAAAGGGGGTATTGGTACCATAGTATAGAA
65 TGAAAGGGGGTACTGGTACCATAGTATAGAA
6826019 GTATCGATAC
1 GTATCGATAC
6826029 CATGGTATGG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
93 5 0.05
94 54 0.58
95 34 0.37
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.26
Consensus pattern (95 bp):
GTATCGATACTAAAAGGAAAGCATTGATACCATGAATTACAGAATGCAGAAATGGTATCGATACT
GAAAGGGGGTACTGGTACCATAGTATAGAA
Found at i:6826462 original size:45 final size:45
Alignment explanation
Indices: 6826388--6826670 Score: 372
Period size: 45 Copynumber: 6.3 Consensus size: 45
6826378 GTTTTCATTA
* *
6826388 CATACATGAAATGCATAACAGTGAGTTAAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
6826433 CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
1 CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
* * * *
6826478 CATAAATGAAATGTAAAAC-GATGCATTAAAGGCATGAAAGGATTC
1 CATAAATGAAATGCATAACAG-TGAATTAAAGGCATGAAAGGATGC
* * *
6826523 CATAAATGAAATGCATAACGGTGCATTAAAGGCACGAAAGGATGC
1 CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
* * *
6826568 CATAAATGAAATGCATAACAGTGCATTAAAGGCATGAAAGGCTGA
1 CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
* * * * *
6826613 TATAAATGAAATGAATAACGGT-ACATTAAAGGCATGAAAAGATTC
1 CATAAATGAAATGCATAACAGTGA-ATTAAAGGCATGAAAGGATGC
6826658 CATAAATGGAAAT
1 CATAAAT-GAAAT
6826671 AATGAATAAT
Statistics
Matches: 211, Mismatches: 23, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
44 1 0.00
45 204 0.97
46 6 0.03
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (45 bp):
CATAAATGAAATGCATAACAGTGAATTAAAGGCATGAAAGGATGC
Found at i:6826596 original size:135 final size:135
Alignment explanation
Indices: 6826388--6826670 Score: 435
Period size: 135 Copynumber: 2.1 Consensus size: 135
6826378 GTTTTCATTA
* *
6826388 CATACATGAAATGCATAACAGTGAGTTAAAGGCATGAAAGGATGCCATAAATGAAATGCATAACA
1 CATAAATGAAATGCATAACAGTGAGTTAAAGGCACGAAAGGATGCCATAAATGAAATGCATAACA
* *
6826453 GTGAATTAAAGGCATGAAAGGATGCCATAAATGAAATGTAA-AACGATGCATTAAAGGCATGAAA
66 GTGAATTAAAGGCATGAAAGGATGACATAAATGAAATG-AATAACGATACATTAAAGGCATGAAA
*
6826517 GGATTC
130 AGATTC
*
6826523 CATAAATGAAATGCATAACGGTGCA-TTAAAGGCACGAAAGGATGCCATAAATGAAATGCATAAC
1 CATAAATGAAATGCATAACAGTG-AGTTAAAGGCACGAAAGGATGCCATAAATGAAATGCATAAC
* * * *
6826587 AGTGCATTAAAGGCATGAAAGGCTGATATAAATGAAATGAATAACGGTACATTAAAGGCATGAAA
65 AGTGAATTAAAGGCATGAAAGGATGACATAAATGAAATGAATAACGATACATTAAAGGCATGAAA
6826652 AGATTC
130 AGATTC
6826658 CATAAATGGAAAT
1 CATAAAT-GAAAT
6826671 AATGAATAAT
Statistics
Matches: 135, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
134 2 0.01
135 127 0.94
136 6 0.04
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (135 bp):
CATAAATGAAATGCATAACAGTGAGTTAAAGGCACGAAAGGATGCCATAAATGAAATGCATAACA
GTGAATTAAAGGCATGAAAGGATGACATAAATGAAATGAATAACGATACATTAAAGGCATGAAAA
GATTC
Found at i:6830669 original size:112 final size:111
Alignment explanation
Indices: 6830470--6830698 Score: 298
Period size: 112 Copynumber: 2.1 Consensus size: 111
6830460 GTTATAGGTG
* * *
6830470 CATTTTGACATACTTTGTGTATGATAATATCAATCGATTATGTTTAACGCATAACAGTGCATATT
1 CATTTCGACATACTTCGTGTATGATAATATCAATCGATTATGCTTAACGCATAACAGTGCATATT
* **
6830535 CGGCATAAAAGGTGCCACCCATGGTATTCATAATGAGGTGAATTAC
66 CGACATAAAAGGCACCACCCATGGTATTCATAATGAGGTGAATTAC
* * * ** *
6830581 CATTTCGACATACTTCGTGTATGA-AAGTTATCGATCGATTTTGCTTAATGCATAATGGTGCATT
1 CATTTCGACATACTTCGTGTATGATAA--TATCAATCGATTATGCTTAACGCATAACAGTGCATA
* **
6830645 TTCGATATAAAAGGCACCGTCCATGGTATTCATAATGAGGTGAATTAC
64 TTCGACATAAAAGGCACCACCCATGGTATTCATAATGAGGTGAATTAC
6830693 CATTTC
1 CATTTC
6830699 AGCACTTTGG
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
110 2 0.02
111 22 0.22
112 77 0.76
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (111 bp):
CATTTCGACATACTTCGTGTATGATAATATCAATCGATTATGCTTAACGCATAACAGTGCATATT
CGACATAAAAGGCACCACCCATGGTATTCATAATGAGGTGAATTAC
Found at i:6835202 original size:55 final size:55
Alignment explanation
Indices: 6835135--6835497 Score: 490
Period size: 55 Copynumber: 6.7 Consensus size: 55
6835125 CGACACTATA
* *
6835135 TGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
6835189 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
* * *
6835244 AGTGCAAAACTAACAAATTCATAATAAGTTTATGAATTTCCTTATGGGCACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
*
6835299 TGTGCAAAACTAACAAATTCATAATAAGTTTATGAATTTCCGTATGGGCAC--TG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
* *
6835352 TGTG-AAAATCCTAAGAAATTCATAATAAGTTTATGAATTTCCCTATTGGCAC--TG
1 TGTGCAAAA--CTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
* * * *
6835406 TGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCCATATTGACACTGTG
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
* * * * * *
6835460 TGCGC-AACCTAATATATTCATAATGAGATTATGAATTT
1 TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTT
6835498 TTGTATTGAC
Statistics
Matches: 285, Mismatches: 18, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
52 44 0.15
53 6 0.02
54 87 0.31
55 148 0.52
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (55 bp):
TGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTG
Found at i:6841118 original size:55 final size:55
Alignment explanation
Indices: 6841035--6842025 Score: 1519
Period size: 55 Copynumber: 18.1 Consensus size: 55
6841025 ATTATCGAAT
* * * * *
6841035 GGCACTATATGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCAGTTTG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * *
6841089 GGCATTGTGTGTACAAAACTAAGAAATTCATCATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* ** *
6841144 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATAAATTTTTGTATA
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841199 GGCACTGTGTGTGCAAAACTAAAAAATTCATAATAAGTGTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841254 GGCACTGTGTGTGCAAAACTAAGAAATTCATACTGAGTTTATGAATTTCTGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841309 GACACTGTGTGTG-AGAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATG
1 GGCACTGTGTGTGCA-AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841364 GGCACTGTGTGTG--AAACTAAGAAATTCATAATAAGTTTATGAATTTCCATATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841417 GTCACTGTGTGTGCAAAACTAAGAAATTCATAATAAG-TTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6841471 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCTGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841526 AGCACTGTGTGTGCAAAACCAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
6841581 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6841636 GGCACTGTATGTGCAGAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCA-AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6841692 GGAACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841747 GGCATTATGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841802 GGCACTGTATATGCAGAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
1 GGCACTGTGTGTGCA-AAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
*
6841858 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATG
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841913 GGCATTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * * *
6841968 GGCACTGTGTGTGC-AACCTTAGAAATTCATAATTA-TATTATGAATTTCCGTATT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGT-TTATGAATTTCCGTATG
6842022 GGCA
1 GGCA
6842026 TTAGGTGTGC
Statistics
Matches: 862, Mismatches: 67, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
53 50 0.06
54 99 0.11
55 607 0.70
56 106 0.12
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (55 bp):
GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:6841726 original size:166 final size:165
Alignment explanation
Indices: 6841035--6842025 Score: 1519
Period size: 166 Copynumber: 6.0 Consensus size: 165
6841025 ATTATCGAAT
* * * * * *
6841035 GGCACTATATGTGC-AACCTAAGAAATTCATAATAAGTTTATGAATTTCAGTTTGGGCATTGTGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
* * *
6841099 GTACAAAACTAAGAAATTCATCATAAGTTTATGAATTTTCGTATGGGCACTGTGTGTGCAAAACT
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCAAAACT
* ** *
6841164 AAGAAATTCATAATAAGTTTATAAATTTTTGTATA
131 AAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841199 GGCACTGTGTGTGCAAAACTAAAAAATTCATAATAAGTGTATGAATTTCCGTATGGGCACTGTGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
* * * *
6841264 GTGCAAAACTAAGAAATTCATACTGAGTTTATGAATTTCTGTATGGACACTGTGTGTG-AGAAAC
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCA-AAAC
*
6841328 TAAGAAATTCATAATAAGTTTATGAATTTCTGTATG
130 TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841364 GGCACTGTGTGTG--AAACTAAGAAATTCATAATAAGTTTATGAATTTCCATATTGTCACTGTGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
*
6841427 GTGCAAAACTAAGAAATTCATAATAAG-TTATGAATTTTCGTATGGGCACTGTGTGTGCAAAACT
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCAAAACT
*
6841491 AAGAAATTCATAATAAGTTTATGAATTTCTGTATG
131 AAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841526 AGCACTGTGTGTGCAAAACCAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCACTGTGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
*
6841591 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTATGTGCAGAAAC
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCA-AAAC
6841656 TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
130 TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* * *
6841692 GGAACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCATTATGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
* *
6841757 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTATATGCAGAAAC
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCA-AAAC
6841822 TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
130 TAAGAAATTCATAATAAGTTTATGAATTTCCGTATG
* *
6841858 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATGGGCATTGTGT
1 GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
* * *
6841923 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTTCGTATTGGCACTGTGTGTGC-AACCT
66 GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCAAAACT
* * *
6841987 TAGAAATTCATAATTA-TATTATGAATTTCCGTATT
131 AAGAAATTCATAATAAGT-TTATGAATTTCCGTATG
6842022 GGCA
1 GGCA
6842026 TTAGGTGTGC
Statistics
Matches: 764, Mismatches: 55, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
162 79 0.10
163 72 0.09
164 123 0.16
165 175 0.23
166 315 0.41
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (165 bp):
GGCACTGTGTGTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGT
GTGCAAAACTAAGAAATTCATAATAAGTTTATGAATTTCCGTATGGGCACTGTGTGTGCAAAACT
AAGAAATTCATAATAAGTTTATGAATTTCCGTATG
Found at i:6847330 original size:21 final size:21
Alignment explanation
Indices: 6847303--6847351 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
6847293 ATACTCATAG
6847303 GGGTATCGATACTTGACCCTA
1 GGGTATCGATACTTGACCCTA
*
6847324 TGGTATCGATACTTGACCCTA
1 GGGTATCGATACTTGACCCTA
6847345 GGGTATC
1 GGGTATC
6847352 AATATTACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (21 bp):
GGGTATCGATACTTGACCCTA
Found at i:6852866 original size:26 final size:26
Alignment explanation
Indices: 6852837--6853026 Score: 155
Period size: 26 Copynumber: 8.0 Consensus size: 26
6852827 TTATTCGTTA
6852837 ATTTCATTTATGGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
*
6852863 ATTTCATTTATGGCATCCTTTTATGC
1 ATTTCATTTATGGCATCCTTTCATGC
*
6852889 -TTT-A---AT-GCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
* **
6852909 ATTTTATTTATAACATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
* *
6852935 ----C-TTAAT-GCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
*
6852955 ATTTTATTTATGGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
* *
6852981 ----C-TTAAT-GCATCATTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
*
6853001 ATTTTATTTATGGCATCCTTTCATGC
1 ATTTCATTTATGGCATCCTTTCATGC
6853027 CAATAATGCA
Statistics
Matches: 128, Mismatches: 18, Indels: 36
0.70 0.10 0.20
Matches are distributed among these distances:
20 37 0.29
21 13 0.10
22 1 0.01
24 1 0.01
25 13 0.10
26 63 0.49
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.47
Consensus pattern (26 bp):
ATTTCATTTATGGCATCCTTTCATGC
Found at i:6852905 original size:46 final size:46
Alignment explanation
Indices: 6852849--6853036 Score: 304
Period size: 46 Copynumber: 4.1 Consensus size: 46
6852839 TTCATTTATG
* * * *
6852849 GCATCCTTTCATGCATTTCATTTATGGCATCCTTTTATGCTTTAAT
1 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
**
6852895 GCATCATTTCATGCATTTTATTTATAACATCCTTTCATGCCTTAAT
1 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
6852941 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
1 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
*
6852987 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCAATAAT
1 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCC-TTAAT
6853034 GCA
1 GCA
6853037 CCCATCTGTA
Statistics
Matches: 132, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 125 0.95
47 7 0.05
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (46 bp):
GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAAT
Found at i:6852908 original size:20 final size:20
Alignment explanation
Indices: 6852875--6853000 Score: 81
Period size: 20 Copynumber: 5.7 Consensus size: 20
6852865 TTCATTTATG
* *
6852875 GCATCCTTTTATGCTTTAAT
1 GCATCATTTCATGCTTTAAT
6852895 GCATCATTTCATGCATTTTATTTAT
1 GCATCATTTCATGC--TTTA---AT
* * *
6852920 AACATCCTTTCATGCCTTAAT
1 -GCATCATTTCATGCTTTAAT
6852941 GCATCATTTCATGCATTTTATTTAT
1 GCATCATTTCATGC--TTTA---AT
* *
6852966 GGCATCCTTTCATGCCTTAAT
1 -GCATCATTTCATGCTTTAAT
6852987 GCATCATTTCATGC
1 GCATCATTTCATGC
6853001 ATTTTATTTA
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
20 37 0.45
21 4 0.05
22 7 0.08
24 6 0.07
25 4 0.05
26 25 0.30
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (20 bp):
GCATCATTTCATGCTTTAAT
Found at i:6852964 original size:92 final size:93
Alignment explanation
Indices: 6852849--6853160 Score: 311
Period size: 92 Copynumber: 3.4 Consensus size: 93
6852839 TTCATTTATG
* * *
6852849 GCATCCTTTCATGCATTTCATTTATGGCATCCTTTTATGCTTTAATGCATCATTTCATGCATTTT
1 GCATCATTTCATGCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTT
*
6852914 ATTTATAACATCCTTTCATGCC-TTAAT
66 ATTTATAACATCCTTTCATGCCAATAAT
*
6852941 GCATCATTTCATGCATTTTATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTT
1 GCATCATTTCATGCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTT
**
6853006 ATTTATGGCATCCTTTCATGCCAATAAT
66 ATTTATAACATCCTTTCATGCCAATAAT
* * ** * * *
6853034 GCACCCA--TC-TGTATTTCAAGTATGGAATCCTTTCATGCCAATAATGCACCCA--T-ATGCAT
1 GCA-TCATTTCATGCATTTCATTTATGGCATCCTTTCATGCC-TTAATGCA-TCATTTCATGCAT
* ** * *
6853093 TTTAATTATGGCATCGTTTCATACCAATAAT
63 TTTATTTATAACATCCTTTCATGCCAATAAT
* * * *
6853124 GTACCCA--T-ATGCATTTCAATTATGGCATCATTTCATG
1 GCA-TCATTTCATGCATTTCATTTATGGCATCCTTTCATG
6853161 GCAATAATGC
Statistics
Matches: 192, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
90 65 0.34
91 26 0.14
92 90 0.47
93 9 0.05
94 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (93 bp):
GCATCATTTCATGCATTTCATTTATGGCATCCTTTCATGCCTTAATGCATCATTTCATGCATTTT
ATTTATAACATCCTTTCATGCCAATAAT
Found at i:6853073 original size:45 final size:45
Alignment explanation
Indices: 6852859--6853458 Score: 665
Period size: 45 Copynumber: 13.3 Consensus size: 45
6852849 GCATCCTTTC
* * ** *
6852859 ATGCATTTCATTTATGGCATCCTTTTATG-CTTTAATGCA-TCATTT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCA--T
* * ** * *
6852904 CATGCATTTTATTTATAACATCCTTTCATGCC-TTAATGCA-TCATTT
1 -ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCA--T
* * * *
6852950 CATGCATTTTATTTATGGCATCCTTTCATGCC-TTAATGCA-TCATTT
1 -ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCA--T
* *
6852996 CATGCATTTTATTTATGGCATCCTTTCATGCCAATAATGCACCCAT
1 -ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* * * *
6853042 CTGTATTTCAAGTATGGAATCCTTTCATGCCAATAATGCACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* * * *
6853087 ATGCATTTTAATTATGGCATCGTTTCATACCAATAATGTACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* *
6853132 ATGCATTTCAATTATGGCATCATTTCATGGCAATAATGCACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* * ** * *
6853177 ATGCTTTTCAATTTTGGCATCCTTTCATGATAATAATCCACTCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* * * **
6853222 ATGCATTTCAATTATTGCATCCTTTCATACTAATAATGTGCCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
*
6853267 ATGCATTTCAATTATGGCATCCTTTCATGCTAATAATGCACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
*
6853312 ATGCATTTCAATTATGGCATCCCTTCATGCCAATAATGCACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* *
6853357 ATTCATTTCAATTATGGCATCCTTTCATGCCAATAATACACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
* *
6853402 ATACATTTTAATTAT-GCATCCTTTCATGCCAATAATGCACCCAT
1 ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
*
6853446 ATGCAATTCAATT
1 ATGCATTTCAATT
6853459 TTTTAATCAA
Statistics
Matches: 493, Mismatches: 58, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
44 38 0.08
45 329 0.67
46 116 0.24
47 8 0.02
48 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (45 bp):
ATGCATTTCAATTATGGCATCCTTTCATGCCAATAATGCACCCAT
Found at i:6853390 original size:22 final size:22
Alignment explanation
Indices: 6853275--6853390 Score: 83
Period size: 22 Copynumber: 5.2 Consensus size: 22
6853265 ATATGCATTT
6853275 CAATTATGGCATCCTTTCATGC
1 CAATTATGGCATCCTTTCATGC
* * * * **
6853297 TAATAAT-GCACCCATATGCATTT
1 CAATTATGGCATCC-T-TTCATGC
*
6853320 CAATTATGGCATCCCTTCATGC
1 CAATTATGGCATCCTTTCATGC
* * **
6853342 CAATAAT-GCACCCATATTCATTT
1 CAATTATGGCATCC-T-TTCATGC
6853365 CAATTATGGCATCCTTTCATGC
1 CAATTATGGCATCCTTTCATGC
6853387 CAAT
1 CAAT
6853391 AATACACCCA
Statistics
Matches: 66, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
21 10 0.15
22 25 0.38
23 21 0.32
24 10 0.15
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.34
Consensus pattern (22 bp):
CAATTATGGCATCCTTTCATGC
Found at i:6854014 original size:75 final size:74
Alignment explanation
Indices: 6853891--6854046 Score: 208
Period size: 75 Copynumber: 2.1 Consensus size: 74
6853881 ACCCTGGTAC
* *
6853891 CGATACTTCTATACTATGGTACCAATACCCCCTTTCAATATCGATACCATTTCT-ATATTTTGTG
1 CGATACTACTATACTATGGTACCAATACCCCCTTTCAATATCGATACCATTT-TGACATTTTG-G
*
6853955 CTGCC-TAGTAT
64 AT-CCATAGTAT
** * *
6853966 CGATACTACTATACTATGGTACTGATACTCCCTTTCAGTATCGATACCATTTTGACATTTTGGAT
1 CGATACTACTATACTATGGTACCAATACCCCCTTTCAATATCGATACCATTTTGACATTTTGGAT
6854031 CCATAGTAT
66 CCATAGTAT
6854040 CGATACT
1 CGATACT
6854047 TCCCTTTCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
73 2 0.03
74 16 0.22
75 54 0.75
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (74 bp):
CGATACTACTATACTATGGTACCAATACCCCCTTTCAATATCGATACCATTTTGACATTTTGGAT
CCATAGTAT
Found at i:6859106 original size:32 final size:32
Alignment explanation
Indices: 6859063--6859123 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
6859053 TGAATCACAA
*
6859063 CAGAGTCAGTATTAAATTCAGATAATGCATAG
1 CAGAGTCAGTATTAAATTCAAATAATGCATAG
* **
6859095 CAGAGTTAGTATTGCATTCAAATAATGCA
1 CAGAGTCAGTATTAAATTCAAATAATGCA
6859124 CAGTAGAGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (32 bp):
CAGAGTCAGTATTAAATTCAAATAATGCATAG
Found at i:6861162 original size:14 final size:14
Alignment explanation
Indices: 6861143--6861196 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
6861133 TCTCCTTGGA
*
6861143 TTAAATTATTAAAT
1 TTAAATTATAAAAT
6861157 TTAAATTATAAAAT
1 TTAAATTATAAAAT
6861171 TT---TTATAAAA-
1 TTAAATTATAAAAT
*
6861181 TTAAAGATATAAAAT
1 TTAAA-TTATAAAAT
6861196 T
1 T
6861197 AAAGAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
10 2 0.06
11 8 0.24
14 22 0.67
15 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TTAAATTATAAAAT
Found at i:6861207 original size:14 final size:14
Alignment explanation
Indices: 6861174--6861201 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6861164 ATAAAATTTT
6861174 TATAAAATTAAAGA
1 TATAAAATTAAAGA
6861188 TATAAAATTAAAGA
1 TATAAAATTAAAGA
6861202 ATTAAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
TATAAAATTAAAGA
Found at i:6861372 original size:17 final size:17
Alignment explanation
Indices: 6861342--6861375 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6861332 CTAGACTCGC
6861342 TTAGAAATACTTAGTAT
1 TTAGAAATACTTAGTAT
* *
6861359 TTAGATATATTTAGTAT
1 TTAGAAATACTTAGTAT
6861376 AATATACGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGAAATACTTAGTAT
Found at i:6864582 original size:5 final size:5
Alignment explanation
Indices: 6864563--6864596 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
6864553 CCACTAACCT
6864563 TTTTCA TTTTA -TTTA TTTTA TTTTA TTTTA TTTT
1 TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
6864597 TATATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 19 0.70
6 4 0.15
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:6864631 original size:131 final size:124
Alignment explanation
Indices: 6864483--6864818 Score: 498
Period size: 121 Copynumber: 2.7 Consensus size: 124
6864473 TTGTTTCTAA
* *
6864483 TATTCGATTCGATCTTGTGGTGACCAGATCCGGGGTATGATCCACATTATTATGGTTCGAACTCT
1 TATTCGATTCGACCTTGTGGTGACCAGATCCGGGGTATGATCCACATTATTATGGTTCGGACTCT
6864548 GCTAACCACTAACCTTTTTCATTTTATTTATTTTATTTTATTTTATTTTTATATATTTTTTTGAA
66 GCTAACCACTAACC--TTTC---TT-TTTATTTTA-TTTATTTTATTTTTATATATTTTTTTGAA
6864613 T
124 T
* *
6864614 TATTCGATTCGACCTTGTGCTGACCAGATCCAGGGTATGATCCACATTATTATGGTTCGGACTCT
1 TATTCGATTCGACCTTGTGGTGACCAGATCCGGGGTATGATCCACATTATTATGGTTCGGACTCT
*
6864679 ACTAACCACTAACC---CTTTTTATTTTATTTATTTTATTTTTATATATTTTTTTGAAT
66 GCTAACCACTAACCTTTCTTTTTATTTTATTTATTTTATTTTTATATATTTTTTTGAAT
* * *
6864735 TATTTGATTTGACCTTGTGGTGACCCGATCCGGGGTATGATCCACATTATTATGGTTCGGACTCT
1 TATTCGATTCGACCTTGTGGTGACCAGATCCGGGGTATGATCCACATTATTATGGTTCGGACTCT
* *
6864800 GCTAATCGCTAACCTTTCT
66 GCTAACCACTAACCTTTCT
6864819 AACTTACTAA
Statistics
Matches: 189, Mismatches: 13, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
121 101 0.53
122 9 0.05
123 2 0.01
124 2 0.01
126 1 0.01
131 74 0.39
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (124 bp):
TATTCGATTCGACCTTGTGGTGACCAGATCCGGGGTATGATCCACATTATTATGGTTCGGACTCT
GCTAACCACTAACCTTTCTTTTTATTTTATTTATTTTATTTTTATATATTTTTTTGAAT
Found at i:6864871 original size:34 final size:34
Alignment explanation
Indices: 6864821--6864960 Score: 106
Period size: 34 Copynumber: 3.9 Consensus size: 34
6864811 ACCTTTCTAA
6864821 CTTACTAACATT-CTAACTTTTTATTTTTATTGTT
1 CTTACTAAC-TTACTAACTTTTTATTTTTATTGTT
6864855 CTTACTAACTTACTAACATTCTAACTT-TTATATTATTGTT
1 CTTACTAACTTACTAAC-TT-T---TTATT-T-TTATTGTT
* * * * *
6864895 CATACTAACATATTGACCTTTATATTTTTATTGTT
1 CTTACTAACTTACT-AACTTTTTATTTTTATTGTT
* * *
6864930 ATTACTAACTTACTACCATTTTA-TTTTATTG
1 CTTACTAACTTACTAACTTTTTATTTTTATTG
6864961 CACAAACTAA
Statistics
Matches: 85, Mismatches: 11, Indels: 21
0.73 0.09 0.18
Matches are distributed among these distances:
33 10 0.12
34 21 0.25
35 20 0.24
36 3 0.04
37 2 0.02
38 2 0.02
39 4 0.05
40 21 0.25
41 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.04, T:0.53
Consensus pattern (34 bp):
CTTACTAACTTACTAACTTTTTATTTTTATTGTT
Found at i:6864876 original size:42 final size:40
Alignment explanation
Indices: 6864817--6864903 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 40
6864807 GCTAACCTTT
* *
6864817 CTAACTTACTAACATTCTAACTTTTTATTTTTATTGTTCTTA
1 CTAACTTACTAACATTCTAAC-TTTTA-TATTATTGTTCATA
6864859 CTAACTTACTAACATTCTAACTTTTATATTATTGTTCATA
1 CTAACTTACTAACATTCTAACTTTTATATTATTGTTCATA
6864899 CTAAC
1 CTAAC
6864904 ATATTGACCT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 17 0.40
41 5 0.12
42 21 0.49
ACGTcount: A:0.30, C:0.18, G:0.02, T:0.49
Consensus pattern (40 bp):
CTAACTTACTAACATTCTAACTTTTATATTATTGTTCATA
Found at i:6865117 original size:5 final size:5
Alignment explanation
Indices: 6865107--6865140 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
6865097 TTTATTTCCT
6865107 TTTTA TTTTA TTTTA TTTTTA TTTTA -TTTA TTTT
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTT
6865141 TCCTGCACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.67
6 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:6865118 original size:16 final size:16
Alignment explanation
Indices: 6865097--6865141 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
6865087 ATTTATGCAA
*
6865097 TTTATTTCCTTTTTAT
1 TTTATTTCATTTTTAT
*
6865113 TTTATTTTATTTTTAT
1 TTTATTTCATTTTTAT
6865129 TTTATTT-ATTTTT
1 TTTATTTCATTTTT
6865142 CCTGCACTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTTCATTTTTAT
Found at i:6865120 original size:11 final size:11
Alignment explanation
Indices: 6865107--6865135 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
6865097 TTTATTTCCT
6865107 TTTTA-TTTTA
1 TTTTATTTTTA
6865117 TTTTATTTTTA
1 TTTTATTTTTA
6865128 TTTTATTT
1 TTTTATTT
6865136 ATTTTTCCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:6865760 original size:15 final size:15
Alignment explanation
Indices: 6865742--6865771 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6865732 TTTTTACCTC
6865742 GTTTTATTTTATTTT
1 GTTTTATTTTATTTT
*
6865757 GTTTTGTTTTATTTT
1 GTTTTATTTTATTTT
6865772 ACTTTCATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.80
Consensus pattern (15 bp):
GTTTTATTTTATTTT
Found at i:6865761 original size:25 final size:24
Alignment explanation
Indices: 6865705--6865761 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
6865695 GATTGTCTTC
6865705 TTTGTTTTACATATTTTATTTTAT
1 TTTGTTTTACATATTTTATTTTAT
* *
6865729 TATT-TTTTACCTCGTTTTATTTTAT
1 T-TTGTTTTACAT-ATTTTATTTTAT
6865754 TTTGTTTT
1 TTTGTTTT
6865762 GTTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.16, C:0.07, G:0.05, T:0.72
Consensus pattern (24 bp):
TTTGTTTTACATATTTTATTTTAT
Found at i:6866114 original size:162 final size:162
Alignment explanation
Indices: 6865841--6866187 Score: 667
Period size: 162 Copynumber: 2.1 Consensus size: 162
6865831 AATTTATGGG
* *
6865841 AAAGTATCCTAACTACAAAGGAAGTGCATTCCCGAGGATTGTTCGCACAAAAAGACATTCTTTTA
1 AAAGTCTCCTAACTACAAAGGAAGTGCATTCCCGAGAATTGTTCGCACAAAAAGACATTCTTTTA
6865906 TATGAACATTTCTAAAATTTAATATAATATTATACTCTTTTAAACTATATTATCCATAAAATTAA
66 TATGAACATTTCTAAAATTTAATATAATATTATACTCTTTTAAACTATATTATCCATAAAATTAA
6865971 AGAAACACGATTTTATGAGGGGAATCCAGGAA
131 AGAAACACGATTTTATGAGGGGAATCCAGGAA
6866003 AAAGTCTCCTAACTACAAAGGAAGTGCATTCCCGAGAATTGTTCGCACAAAAAGACATTCTTTTA
1 AAAGTCTCCTAACTACAAAGGAAGTGCATTCCCGAGAATTGTTCGCACAAAAAGACATTCTTTTA
6866068 TATGAACATTTCTAAAATTTAATATAATATTATACTCTTTTAAACTATATTATCCATAAAATTAA
66 TATGAACATTTCTAAAATTTAATATAATATTATACTCTTTTAAACTATATTATCCATAAAATTAA
6866133 AGAAACACGATTTTATGAGGGGAATCCAGGAA
131 AGAAACACGATTTTATGAGGGGAATCCAGGAA
*
6866165 AAAGTCTCCTAACTATAAAGGAA
1 AAAGTCTCCTAACTACAAAGGAA
6866188 ATTCATTTTC
Statistics
Matches: 182, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 182 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (162 bp):
AAAGTCTCCTAACTACAAAGGAAGTGCATTCCCGAGAATTGTTCGCACAAAAAGACATTCTTTTA
TATGAACATTTCTAAAATTTAATATAATATTATACTCTTTTAAACTATATTATCCATAAAATTAA
AGAAACACGATTTTATGAGGGGAATCCAGGAA
Found at i:6873212 original size:37 final size:39
Alignment explanation
Indices: 6873169--6873243 Score: 109
Period size: 37 Copynumber: 2.0 Consensus size: 39
6873159 AACATAATTG
* * *
6873169 ATCTCGCTTGAGATAGTTTT-TCTTAAAA-ACTAATTTC
1 ATCTCGCTTGAGACAGTTTTCCCTTAAAACACAAATTTC
6873206 ATCTCGCTTGAGACAGTTTTCCCTTAAAACACAAATTT
1 ATCTCGCTTGAGACAGTTTTCCCTTAAAACACAAATTT
6873244 TGAAATGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 19 0.58
38 7 0.21
39 7 0.21
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.39
Consensus pattern (39 bp):
ATCTCGCTTGAGACAGTTTTCCCTTAAAACACAAATTTC
Found at i:6873734 original size:139 final size:139
Alignment explanation
Indices: 6873428--6873737 Score: 442
Period size: 139 Copynumber: 2.2 Consensus size: 139
6873418 TATGACTAAC
* * * * * * *
6873428 TCTCCTCAACGCGTAGGAGCAGCGTCATTATCAGGCAATCAGACTTTCTCATCATGTAGGAACCG
1 TCTCCTCAACGCGTAGGAGAAGCGTCATCATCAGGAAATCAGACTTCCTCATCACGTAAGAACCA
* * * *
6873493 TGTTGTCTTCAAATTATCCCTAAAGACGGCTAGACATCCTCATCACGTAGGAATAATGTCGTCCA
66 TGTTGTCTCCAAATTAACCCTAAAGACGGCTAGACATCATCATCACGTAGGAACAATGTCGTCCA
* *
6873558 TCGACCAGG
131 CCGACCAGA
* * *
6873567 TCTCCTCAATGAGTAGGAGCAA-CATCATCATCAGGAAATCAGACTTCCTCATCACGTAAGAACC
1 TCTCCTCAACGCGTAGGAG-AAGCGTCATCATCAGGAAATCAGACTTCCTCATCACGTAAGAACC
*
6873631 ATGTTGTCTCCAAATTAACCCTAAAGACGGCTAGACGTCATCATCACGTAGGAACAATGTCGTCC
65 ATGTTGTCTCCAAATTAACCCTAAAGACGGCTAGACATCATCATCACGTAGGAACAATGTCGTCC
6873696 ACCGACCAGA
130 ACCGACCAGA
*
6873706 TCTCCTCAACGCGTAGGAGAAGTGTCATCATC
1 TCTCCTCAACGCGTAGGAGAAGCGTCATCATC
6873738 TAACAACCAG
Statistics
Matches: 148, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
138 2 0.01
139 145 0.98
140 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (139 bp):
TCTCCTCAACGCGTAGGAGAAGCGTCATCATCAGGAAATCAGACTTCCTCATCACGTAAGAACCA
TGTTGTCTCCAAATTAACCCTAAAGACGGCTAGACATCATCATCACGTAGGAACAATGTCGTCCA
CCGACCAGA
Found at i:6873788 original size:40 final size:40
Alignment explanation
Indices: 6873743--6873880 Score: 136
Period size: 40 Copynumber: 3.4 Consensus size: 40
6873733 TCATCTAACA
* * *
6873743 ACCAGACTTCTTCAACATGAACGAACAATGTCATCCACCG
1 ACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAG
* * *
6873783 ACCAGA-TCTCCTCAATATGAAGGAGCAATGTCATCCTCAG
1 ACCAGACT-TCCTCAATATGAACGAACAATGTCATCCACAG
* * *
6873823 ATAACCAGACTTCCTCAATATAAATGAACAATGTCGTCCACAG
1 ---ACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAG
6873866 ACCAGA-TCTCCTCAA
1 ACCAGACT-TCCTCAA
6873881 CGCGTAGGAG
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
39 2 0.02
40 45 0.56
43 33 0.41
44 1 0.01
ACGTcount: A:0.36, C:0.30, G:0.13, T:0.22
Consensus pattern (40 bp):
ACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAG
Found at i:6873829 original size:83 final size:83
Alignment explanation
Indices: 6873675--6874100 Score: 437
Period size: 83 Copynumber: 5.1 Consensus size: 83
6873665 ACGTCATCAT
* * * *
6873675 CACGTAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACGCGTAGGAGAAGTGTCATCATCTA
1 CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACGAAGGAGAAGTGTCATCCTC-A
*
6873740 -ACAACCAGACTTCTTCAA
65 GACAACCAGACTTCCTCAA
* * * * *
6873758 CATGAACGAACAATGTCATCCACCGACCAGATCTCCTCAATATGAAGGAGCAA-TGTCATCCTCA
1 CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACGAAGGAG-AAGTGTCATCCTCA
*
6873822 GATAACCAGACTTCCTCAA
65 GACAACCAGACTTCCTCAA
* ** * * * * * ** *
6873841 TATAAATGAACAATGTCGTCCACAGACCAGATCTCCTCAACGCGTAGGAGTAGCATCATCCTTAG
1 CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACGAAGGAGAAGTGTCATCCTCAG
* *
6873906 ATAACCAGACTTCCTCCA
66 ACAACCAGACTTCCTCAA
* ** * *
6873924 CGCGAAGGAACAATGTTATCCACCGACCAGATCTCCTCAACAAGAAGGAGAAGTGTCATCCTCAA
1 CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACGAAGGAGAAGTGTCATCCTCAG
* *
6873989 ACAACTATACTTCCTCAA
66 ACAACCAGACTTCCTCAA
* * * * *
6874007 CACGAAGGAACAATTTCGTCCATCGACCAGATCTCCTCAACGCGAAAGG-GTAGCGTCATCCAT-
1 CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACG-AAGGAGAAGTGTCATCC-TC
*
6874070 AGACAATCAGACTTCCTCAA
64 AGACAACCAGACTTCCTCAA
**
6874090 TGCGAAGGAAC
1 CACGAAGGAAC
6874101 TGGTCTCCAA
Statistics
Matches: 278, Mismatches: 60, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
82 2 0.01
83 269 0.97
84 7 0.03
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (83 bp):
CACGAAGGAACAATGTCGTCCACCGACCAGATCTCCTCAACACGAAGGAGAAGTGTCATCCTCAG
ACAACCAGACTTCCTCAA
Found at i:6873843 original size:43 final size:42
Alignment explanation
Indices: 6873742--6873866 Score: 130
Period size: 43 Copynumber: 3.0 Consensus size: 42
6873732 ATCATCTAAC
* * *
6873742 AACCAGACTTCTTCAACATGAACGAACAATGTCATCCACCG-
1 AACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAGA
* * *
6873783 -ACCAGA-TCTCCTCAATATGAAGGAGCAATGTCATCCTCAGA
1 AACCAGACT-TCCTCAATATGAACGAACAATGTCATCCACAGA
* * *
6873824 TAACCAGACTTCCTCAATATAAATGAACAATGTCGTCCACAGA
1 -AACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAGA
6873867 CCAGATCTCC
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.01
40 32 0.47
43 34 0.50
44 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.22
Consensus pattern (42 bp):
AACCAGACTTCCTCAATATGAACGAACAATGTCATCCACAGA
Found at i:6873956 original size:166 final size:165
Alignment explanation
Indices: 6873680--6874100 Score: 533
Period size: 166 Copynumber: 2.5 Consensus size: 165
6873670 ATCATCACGT
* * *
6873680 AGGAACAATGTCGTCCACCGACCAGATCTCCTCAACGCGTAGGAGAAGTGTCATCATCTA-ACAA
1 AGGAACAATGTCGTCCA-CGACCAGATCTCCTCAACGCGTAGGAGTAGCGTCATCCT-TAGACAA
* ** * * *
6873744 CCAGACTTCTTCAACATGAACGAACAATGTCATCCACCGACCAGATCTCCTCAATATGAAGGAGC
64 CCAGACTTCCTCAACGCGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACAAGAAGGAG-
* * * *
6873809 AA-TGTCATCCTCAGATAACCAGACTTCCTCAATATAA
128 AAGTGTCATCCTCAAACAACCAGACTTCCTCAACACAA
* * *
6873846 ATGAACAATGTCGTCCACAGACCAGATCTCCTCAACGCGTAGGAGTAGCATCATCCTTAGATAAC
1 AGGAACAATGTCGTCCAC-GACCAGATCTCCTCAACGCGTAGGAGTAGCGTCATCCTTAGACAAC
* *
6873911 CAGACTTCCTCCACGCGAAGGAACAATGTTATCCACCGACCAGATCTCCTCAACAAGAAGGAGAA
65 CAGACTTCCTCAACGCGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACAAGAAGGAGAA
* * *
6873976 GTGTCATCCTCAAACAACTATACTTCCTCAACACGA
130 GTGTCATCCTCAAACAACCAGACTTCCTCAACACAA
* * *
6874012 AGGAACAATTTCGTCCATCGACCAGATCTCCTCAACGCGAAAGG-GTAGCGTCATCCATAGACAA
1 AGGAACAATGTCGTCCA-CGACCAGATCTCCTCAACGCG-TAGGAGTAGCGTCATCCTTAGACAA
* *
6874076 TCAGACTTCCTCAATGCGAAGGAAC
64 CCAGACTTCCTCAACGCGAAGGAAC
6874101 TGGTCTCCAA
Statistics
Matches: 220, Mismatches: 30, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
165 5 0.02
166 211 0.96
167 4 0.02
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (165 bp):
AGGAACAATGTCGTCCACGACCAGATCTCCTCAACGCGTAGGAGTAGCGTCATCCTTAGACAACC
AGACTTCCTCAACGCGAAGGAACAATGTCATCCACCGACCAGATCTCCTCAACAAGAAGGAGAAG
TGTCATCCTCAAACAACCAGACTTCCTCAACACAA
Found at i:6873971 original size:40 final size:40
Alignment explanation
Indices: 6873927--6874047 Score: 93
Period size: 40 Copynumber: 3.0 Consensus size: 40
6873917 TCCTCCACGC
6873927 GAAGGAACAATGTTATCCACCGACCAGATCTCCTCAACAA
1 GAAGGAACAATGTTATCCACCGACCAGATCTCCTCAACAA
* * * ** * * *
6873967 GAAGGAGA-AGTGTCATCCTCAAACAACTATACTTCCTCAACAC
1 GAAGGA-ACAATGTTATCCACCGACCA-GAT-C-TCCTCAACAA
* *
6874010 GAAGGAACAAT-TTCGTCCATCGACCAGATCTCCTCAAC
1 GAAGGAACAATGTT-ATCCACCGACCAGATCTCCTCAAC
6874048 GCGAAAGGGT
Statistics
Matches: 58, Mismatches: 17, Indels: 12
0.67 0.20 0.14
Matches are distributed among these distances:
40 26 0.45
41 4 0.07
42 5 0.09
43 23 0.40
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (40 bp):
GAAGGAACAATGTTATCCACCGACCAGATCTCCTCAACAA
Found at i:6874325 original size:122 final size:121
Alignment explanation
Indices: 6874107--6874453 Score: 419
Period size: 122 Copynumber: 2.9 Consensus size: 121
6874097 GAACTGGTCT
* * * ** *
6874107 CCAAATTATCTCCAGATTGACACGAATTCCTAAACAAGATGGAACTGCATCATCTTCAGCAAACA
1 CCAAATTATCTCCAGATTGAC-CGAATTCCTCAACGAGAAGGAACAACATCATCTTCAACAAACA
* * * *
6874172 ATTTACCTGAAAGTGGCTAGAACTCTTCAACATGGATGAACAGTGTCGTCTAT-AACA
65 ATTTATCTGAAAGTGGCTAGATCTCTTCAACATGGATGAACAGAGTCGTAT-TCAACA
* * * * *
6874229 TCAAATTATCTCTATATTGATCCGACTTCCTCAACGAGAAGGAACAACATCATCTTCAATAAACA
1 CCAAATTATCTCCAGATTGA-CCGAATTCCTCAACGAGAAGGAACAACATCATCTTCAACAAACA
* * * * *
6874294 ATTTATCTGAAAGCGACTAGATCTCTTCAACACGGATGAGCAGAGTTGTATTCAACA
65 ATTTATCTGAAAGTGGCTAGATCTCTTCAACATGGATGAACAGAGTCGTATTCAACA
** * *
6874351 CCAAACAATCTCCAGATTGACCCGATTTCCTCAATGAGAAGGAACAACATCATCTTCAACAAACA
1 CCAAATTATCTCCAGATTGA-CCGAATTCCTCAACGAGAAGGAACAACATCATCTTCAACAAACA
*
6874416 ATTTATCTGAAAGTGGC-ATATCTCTTCAACATGGATGA
65 ATTTATCTGAAAGTGGCTAGATCTCTTCAACATGGATGA
6874454 GTAATGTCTT
Statistics
Matches: 190, Mismatches: 33, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
121 20 0.11
122 169 0.89
123 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (121 bp):
CCAAATTATCTCCAGATTGACCGAATTCCTCAACGAGAAGGAACAACATCATCTTCAACAAACAA
TTTATCTGAAAGTGGCTAGATCTCTTCAACATGGATGAACAGAGTCGTATTCAACA
Found at i:6875311 original size:22 final size:22
Alignment explanation
Indices: 6875286--6875332 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
6875276 TATATTATTT
*
6875286 AAATTATTTATGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
6875308 AAATTATTTACGTTTATGTGTA
1 AAATTATTTACGTTTATGTGTA
6875330 AAA
1 AAA
6875333 AATTTATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (22 bp):
AAATTATTTACGTTTATGTGTA
Found at i:6878699 original size:13 final size:13
Alignment explanation
Indices: 6878681--6878705 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6878671 ATAATAAACA
6878681 AAATTAACAAAAT
1 AAATTAACAAAAT
6878694 AAATTAACAAAA
1 AAATTAACAAAA
6878706 AGTCTAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATTAACAAAAT
Found at i:6878716 original size:34 final size:34
Alignment explanation
Indices: 6878677--6878764 Score: 122
Period size: 34 Copynumber: 2.6 Consensus size: 34
6878667 ATTGATAATA
* *
6878677 AACAAAATTAACAAAATAAATTAACAAAAAGTCT
1 AACAAAATTAACAAAATAAATTAAAAAAAAGTCC
** *
6878711 AACAAAATTGGCAAAATAATTTAAAAAAAAGTCC
1 AACAAAATTAACAAAATAAATTAAAAAAAAGTCC
*
6878745 AACCAAATTAACAAAATAAA
1 AACAAAATTAACAAAATAAA
6878765 GTAAGTGTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.64, C:0.12, G:0.05, T:0.19
Consensus pattern (34 bp):
AACAAAATTAACAAAATAAATTAAAAAAAAGTCC
Found at i:6878801 original size:13 final size:13
Alignment explanation
Indices: 6878783--6878816 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6878773 TAAATGATAA
*
6878783 ACAATAAAAAATT
1 ACAATAAAAAAGT
6878796 ACAATAAAAAAGT
1 ACAATAAAAAAGT
*
6878809 CCAATAAA
1 ACAATAAA
6878817 CAACTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
ACAATAAAAAAGT
Found at i:6881094 original size:11 final size:12
Alignment explanation
Indices: 6881073--6881106 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
6881063 TTTAAATGGT
6881073 TAAATAAAATAC
1 TAAATAAAATAC
6881085 TAAA-AAAATAC
1 TAAATAAAATAC
*
6881096 TAAATATAATA
1 TAAATAAAATA
6881107 AAATATACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (12 bp):
TAAATAAAATAC
Found at i:6885539 original size:21 final size:21
Alignment explanation
Indices: 6885451--6885532 Score: 146
Period size: 21 Copynumber: 3.9 Consensus size: 21
6885441 GACTATCGCA
* *
6885451 TGCGATTTCCCAAATTCGCGT
1 TGCGATTTTCCTAATTCGCGT
6885472 TGCGATTTTCCTAATTCGCGT
1 TGCGATTTTCCTAATTCGCGT
6885493 TGCGATTTTCCTAATTCGCGT
1 TGCGATTTTCCTAATTCGCGT
6885514 TGCGATTTTCCTAATTCGC
1 TGCGATTTTCCTAATTCGC
6885533 AATGCGAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
TGCGATTTTCCTAATTCGCGT
Found at i:6885539 original size:42 final size:41
Alignment explanation
Indices: 6885446--6885539 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 41
6885436 ATTCTGACTA
6885446 TCGCATGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAAT
1 TCGCATGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAAT
* * *
6885487 TCGCGTTGCGATTTTCCTAATTCGCGTTGCGATTTTCCTAAT
1 TCGC-ATGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAAT
6885529 TCGCAATGCGA
1 TCGC-ATGCGA
6885540 ATACGTAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 4 0.09
42 43 0.91
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (41 bp):
TCGCATGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAAT
Found at i:6885554 original size:20 final size:20
Alignment explanation
Indices: 6885529--6885602 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
6885519 TTTTCCTAAT
6885529 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* ** *
6885549 TCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAA-TACGTAAA
6885570 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
6885590 TCGCAATGCGAAT
1 TCGCAATGCGAAT
6885603 CTGACTATCG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:6885574 original size:41 final size:40
Alignment explanation
Indices: 6885529--6885620 Score: 139
Period size: 41 Copynumber: 2.3 Consensus size: 40
6885519 TTTTCCTAAT
*
6885529 TCGCAATGCGAATACGTAAATCGCAACGCGAATTTGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCT-GAAAA
* **
6885570 TCGCAATGCGAATACGTAAATCGCAATGCGAATCTGACTA
1 TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
6885610 TCGCAATGCGA
1 TCGCAATGCGA
6885621 TTTACATAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 14 0.30
41 33 0.70
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAACGCGAATCTGAAAA
Found at i:6886216 original size:20 final size:20
Alignment explanation
Indices: 6886191--6886239 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
6886181 CAACGAGTCA
6886191 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
6886211 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
*
6886231 ATTGCAACG
1 ATCGCAACG
6886240 AGAGAATCAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.22
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:6886331 original size:20 final size:20
Alignment explanation
Indices: 6886283--6886332 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
6886273 CGATTCTTGC
**
6886283 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
*
6886303 ATTGCGATTTTCATTTTCGT
1 GTTGCGATTTTCATTTTCGT
6886323 GTTGCGATTT
1 GTTGCGATTT
6886333 AAAGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.50
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Done.