Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 62
Found at i:7141077 original size:88 final size:86
Alignment explanation
Indices: 7140913--7141077 Score: 224
Period size: 88 Copynumber: 1.9 Consensus size: 86
7140903 GGTGAAGAGC
* *
7140913 TATAGTGGCTTTTTTGGAACAAACGCCGCAAAAGGTCAAGATATATAGAGGCATTTTTTGGATAC
1 TATAGTGACTTTTTTGGAACAAACGCCGCAAAAGGTCAAGATATATAGAGACATTTTTTGGATAC
*
7140978 AAACGCCGTAAAAGGTCGATA
66 AAACACCGTAAAAGGTCGATA
* * * *
7140999 TATAGTGACATTTTTTGGATGCAAACGCCGCAAAAAGGTC-AGGTATATAGCGACGTTTTTTGGA
1 TATAGTGAC-TTTTTTGGA-ACAAACGCCGC-AAAAGGTCAAGATATATAGAGACATTTTTTGGA
*
7141063 TACAAACACTGTAAA
63 TACAAACACCGTAAA
7141078 TTATCTAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
86 8 0.12
87 9 0.13
88 43 0.63
89 8 0.12
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (86 bp):
TATAGTGACTTTTTTGGAACAAACGCCGCAAAAGGTCAAGATATATAGAGACATTTTTTGGATAC
AAACACCGTAAAAGGTCGATA
Found at i:7145962 original size:16 final size:16
Alignment explanation
Indices: 7145943--7145982 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
7145933 AGTTTCTCAT
7145943 TGCACTGGTTTTCGCC
1 TGCACTGGTTTTCGCC
7145959 TGCACTGGTTTTCGCC
1 TGCACTGGTTTTCGCC
*
7145975 TACACTGG
1 TGCACTGG
7145983 CTTAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.30, G:0.25, T:0.35
Consensus pattern (16 bp):
TGCACTGGTTTTCGCC
Found at i:7146126 original size:35 final size:35
Alignment explanation
Indices: 7146086--7146157 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
7146076 AAGGGAATTC
7146086 CTTAATTTTTCTTTGTGTTGGTCAATCAAATCTAA
1 CTTAATTTTTCTTTGTGTTGGTCAATCAAATCTAA
7146121 CTTAATTTTTCTTTGTGTTGGTCAATCAAATCTAA
1 CTTAATTTTTCTTTGTGTTGGTCAATCAAATCTAA
7146156 CT
1 CT
7146158 GGAGTGTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.25, C:0.15, G:0.11, T:0.49
Consensus pattern (35 bp):
CTTAATTTTTCTTTGTGTTGGTCAATCAAATCTAA
Found at i:7147067 original size:125 final size:125
Alignment explanation
Indices: 7146845--7147096 Score: 504
Period size: 125 Copynumber: 2.0 Consensus size: 125
7146835 AATTGATAAA
7146845 GAGTAAAGATGATTAGAGACCTGGGTATTTGAAGGCAGAAATGGCAGCTCAGACCTCCCAGGGTA
1 GAGTAAAGATGATTAGAGACCTGGGTATTTGAAGGCAGAAATGGCAGCTCAGACCTCCCAGGGTA
7146910 AAGAGAAGGCGTACTTGATATTGAGCCTAGTAGATTGATGGAGGCGCGAGAGTCGTGACT
66 AAGAGAAGGCGTACTTGATATTGAGCCTAGTAGATTGATGGAGGCGCGAGAGTCGTGACT
7146970 GAGTAAAGATGATTAGAGACCTGGGTATTTGAAGGCAGAAATGGCAGCTCAGACCTCCCAGGGTA
1 GAGTAAAGATGATTAGAGACCTGGGTATTTGAAGGCAGAAATGGCAGCTCAGACCTCCCAGGGTA
7147035 AAGAGAAGGCGTACTTGATATTGAGCCTAGTAGATTGATGGAGGCGCGAGAGTCGTGACT
66 AAGAGAAGGCGTACTTGATATTGAGCCTAGTAGATTGATGGAGGCGCGAGAGTCGTGACT
7147095 GA
1 GA
7147097 TGACACGACA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.21
Consensus pattern (125 bp):
GAGTAAAGATGATTAGAGACCTGGGTATTTGAAGGCAGAAATGGCAGCTCAGACCTCCCAGGGTA
AAGAGAAGGCGTACTTGATATTGAGCCTAGTAGATTGATGGAGGCGCGAGAGTCGTGACT
Found at i:7148284 original size:41 final size:39
Alignment explanation
Indices: 7148237--7148359 Score: 111
Period size: 41 Copynumber: 3.0 Consensus size: 39
7148227 CAACTATGTC
7148237 GCGGTGTTTGTTGAAAAATGCCACTATAGATTATACCTATT
1 GCGGTGTTTGTT-AAAAATGCCACTATAGATTA-ACCTATT
* * * * *
7148278 GTGGTGTTTGTATAAAAACGCCACTACAGAACTAATCTATT
1 GCGGTGTTTGT-TAAAAATGCCACTATAG-ATTAACCTATT
* * * *
7148319 GCGGTATTTATTAAAAAATGACACTATAGATGAACCCTATT
1 GCGGTGTTTGTT-AAAAATGCCACTATAGATTAA-CCTATT
7148360 ATGACATTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
40 4 0.06
41 56 0.88
42 4 0.06
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (39 bp):
GCGGTGTTTGTTAAAAATGCCACTATAGATTAACCTATT
Found at i:7152713 original size:171 final size:171
Alignment explanation
Indices: 7152428--7152769 Score: 684
Period size: 171 Copynumber: 2.0 Consensus size: 171
7152418 CTAACATGTC
7152428 AGCAAGTGAAAGCTGAACATCAAGTGCCATCTGGATTACTGTAGCCTATATATATTCCTGAGTGG
1 AGCAAGTGAAAGCTGAACATCAAGTGCCATCTGGATTACTGTAGCCTATATATATTCCTGAGTGG
7152493 AAGTGGGAATGGGTAACAATGGATTTTGTTTCGGGGTTACCGTTGTCACCAGGTAAAAAGGACTA
66 AAGTGGGAATGGGTAACAATGGATTTTGTTTCGGGGTTACCGTTGTCACCAGGTAAAAAGGACTA
7152558 GATATGGGTTATAGTGGACATATTAACCAAGACATCTCATT
131 GATATGGGTTATAGTGGACATATTAACCAAGACATCTCATT
7152599 AGCAAGTGAAAGCTGAACATCAAGTGCCATCTGGATTACTGTAGCCTATATATATTCCTGAGTGG
1 AGCAAGTGAAAGCTGAACATCAAGTGCCATCTGGATTACTGTAGCCTATATATATTCCTGAGTGG
7152664 AAGTGGGAATGGGTAACAATGGATTTTGTTTCGGGGTTACCGTTGTCACCAGGTAAAAAGGACTA
66 AAGTGGGAATGGGTAACAATGGATTTTGTTTCGGGGTTACCGTTGTCACCAGGTAAAAAGGACTA
7152729 GATATGGGTTATAGTGGACATATTAACCAAGACATCTCATT
131 GATATGGGTTATAGTGGACATATTAACCAAGACATCTCATT
7152770 TTATTCTGGT
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 171 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (171 bp):
AGCAAGTGAAAGCTGAACATCAAGTGCCATCTGGATTACTGTAGCCTATATATATTCCTGAGTGG
AAGTGGGAATGGGTAACAATGGATTTTGTTTCGGGGTTACCGTTGTCACCAGGTAAAAAGGACTA
GATATGGGTTATAGTGGACATATTAACCAAGACATCTCATT
Found at i:7154980 original size:45 final size:45
Alignment explanation
Indices: 7154925--7155038 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
7154915 ATGAAAATAC
* * * * * * *
7154925 AAATGCATATGGGTGCATTATTAGCACGAAATG-ATGCCATAGTTG
1 AAATGTATATGGGTACATTATCAACA-GAAAGGTATACCATAGTTA
* *
7154970 AAATGTATATGGGTACATTATCAACATAAAGGTATACTATAGTTA
1 AAATGTATATGGGTACATTATCAACAGAAAGGTATACCATAGTTA
7155015 AAATGTATATGGGTACATTATCAA
1 AAATGTATATGGGTACATTATCAA
7155039 TGAAAAAGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 4 0.07
45 55 0.93
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.32
Consensus pattern (45 bp):
AAATGTATATGGGTACATTATCAACAGAAAGGTATACCATAGTTA
Found at i:7155716 original size:27 final size:26
Alignment explanation
Indices: 7155685--7155753 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
7155675 ACATAATAAT
7155685 AATAATAATAAAAAAAAAATATAAAAC
1 AATAATAATAAAAAAAAAAT-TAAAAC
**
7155712 AATAACTAA-AAATAATGAAATTAAAAC
1 AATAA-TAATAAA-AAAAAAATTAAAAC
*
7155739 TAT-A-AATAAAAAAAA
1 AATAATAATAAAAAAAA
7155754 CTAGTAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
24 5 0.15
25 3 0.09
26 1 0.03
27 16 0.47
28 9 0.26
ACGTcount: A:0.74, C:0.04, G:0.01, T:0.20
Consensus pattern (26 bp):
AATAATAATAAAAAAAAAATTAAAAC
Found at i:7157080 original size:3 final size:3
Alignment explanation
Indices: 7157064--7157105 Score: 50
Period size: 3 Copynumber: 13.7 Consensus size: 3
7157054 ATTGGGCCTG
*
7157064 TAA TAA TATT TAA TAA TAA TAA TAA TAA TAA T-A TAAA TAA TA
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
7157106 TTCAAATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.82
4 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:7157379 original size:16 final size:17
Alignment explanation
Indices: 7157358--7157397 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
7157348 TGTGAACTTC
7157358 TTCTTCTTCA-TATGAA
1 TTCTTCTTCATTATGAA
7157374 TTCTTC-TCATTATGAA
1 TTCTTCTTCATTATGAA
7157390 TTCCTTCT
1 TT-CTTCT
7157398 GGAAATGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 3 0.14
16 14 0.67
17 4 0.19
ACGTcount: A:0.20, C:0.23, G:0.05, T:0.53
Consensus pattern (17 bp):
TTCTTCTTCATTATGAA
Found at i:7157588 original size:113 final size:114
Alignment explanation
Indices: 7157441--7158118 Score: 1082
Period size: 114 Copynumber: 6.0 Consensus size: 114
7157431 ATAGAGTCAT
* * * *
7157441 GCAAAAGGTCGAACAAGCTT-TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAATTCTTCT
1 GCAAAAGGTTGAACAA-ATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
7157505 CATTATGAACTTTCTCTGG-AAAAGTTGATCCATCAAGTGATGAATTTAA
65 CATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
* * * * * * *
7157554 GAAAAAAGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTTCTTCTTCAGTTGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
7157619 ATTATGAACTTTCTCTAG-AAAAGCTGATCCATCAAGTGAT-GATTTGA
66 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
* *
7157666 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTTAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
7157731 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
* *
7157780 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCTTTCTTTAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
7157845 ATTATGAACTTTCTCTGGAAAAAGTTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
7157894 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
7157959 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
*
7158008 GCAAAATGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
** *
7158073 ATTATGAACTTTAACTGG-AAAAGCTGATCCAT--TGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
7158119 ATCTTTGCTA
Statistics
Matches: 532, Mismatches: 30, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
111 13 0.02
112 80 0.15
113 128 0.24
114 311 0.58
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (114 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGA
Found at i:7159283 original size:19 final size:17
Alignment explanation
Indices: 7159259--7159307 Score: 64
Period size: 16 Copynumber: 2.8 Consensus size: 17
7159249 AAAATAAAAG
7159259 AATAAATTGAATTTTCGAA
1 AATAAATTGAATTTTC--A
*
7159278 AATAAATTGAA-TCTCA
1 AATAAATTGAATTTTCA
7159294 AATAAATTGAATTT
1 AATAAATTGAATTT
7159308 AGAGAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 1 0.04
18 3 0.11
19 11 0.41
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (17 bp):
AATAAATTGAATTTTCA
Found at i:7166814 original size:637 final size:637
Alignment explanation
Indices: 7165599--7167511 Score: 3603
Period size: 637 Copynumber: 3.0 Consensus size: 637
7165589 GGTACTGGTA
* * * *
7165599 AAGGTGTAAAAGATAACCTTTCACTTTCCTTTCAAGATCCTCTGGACTCTACTTGATTAGTTTTT
1 AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
* *
7165664 GTTTCTTCTTTCTTAACCCTTGGCTGGGTTATTATAACACTTTTCAAAGAATCCTTGTTGTAAGA
66 GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCAAAGAATCCTTGTTGTAAGA
7165729 GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
131 GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
7165794 TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
196 TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
7165859 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
261 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
7165924 TACTGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
326 TACTGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
* * *
7165989 CATACTGTCTGAATATTTTGTTATTCTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGACC
391 CATACTGTCTGAATGTTTCGTTATTTTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGACC
*
7166054 ATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCATATCTTTCCAGGATCTAATGTT
456 ATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGTT
7166119 GGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGAA
521 GGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGAA
7166184 TTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
586 TTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
7166236 AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
1 AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
7166301 GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCAAAGAATCCTTGTTGTAAGA
66 GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCAAAGAATCCTTGTTGTAAGA
7166366 GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
131 GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
**
7166431 TTGATTCAATTTTTTCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
196 TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
*
7166496 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGATTTTAACGTATGGACAAACAT
261 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
*
7166561 TAATGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
326 TACTGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
7166626 CATACTGTCTGAATGTTTCGTTATTTTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGACC
391 CATACTGTCTGAATGTTTCGTTATTTTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGACC
7166691 ATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGTT
456 ATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGTT
7166756 GGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGAA
521 GGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGAA
7166821 TTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
586 TTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
7166873 AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
1 AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
*
7166938 GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCGAAGAATCCTTGTTGTAAGA
66 GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCAAAGAATCCTTGTTGTAAGA
* *
7167003 GCTTGCATTGTTGACTTCGTTCTCCTTTTTTCGGTACATAGGTCTTTTGGAACTAGATCCCTCAT
131 GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
7167068 TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
196 TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
7167133 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
261 AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
*
7167198 TACTGTGGCCTCTTTTTCTGATAGAGGTGACTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
326 TACTGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
*
7167263 CATACTGTCTAAATGTTTCGTT-TTTCTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGAC
391 CATACTGTCTGAATGTTTCGTTATTT-TTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGAC
7167327 CATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGT
455 CATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGT
* * *
7167392 TGGCTTTGGTTAATTGAGTATACCATTTTAAAGTTGGTCCTGTCAAATTATCTTGAAAGCAGTGA
520 TGGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGA
*
7167457 ATTAACAATTTCTCGTCTTTCACATATCCTGCCATTATGTGACAAAACATAGT
585 ATTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
7167510 AA
1 AA
7167512 TGTGGGATGA
Statistics
Matches: 1248, Mismatches: 27, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
636 3 0.00
637 1245 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (637 bp):
AAGGTGTAAAAGACAACCTTTCACTTTCCTTTCGAGATCCTCTGGACTCTACTCGATTAGTGTTT
GTTTCTCCTTTCTTAACCCTTGGCTGGGTTATTGTAACACTTTTCAAAGAATCCTTGTTGTAAGA
GCTTGCATTGTTGACTTCGTTCTCCTTTTTCCGGTACATAGGTCTTTTGGAACTAGACCCCTCAT
TTGATTCAATTTTGCCACTTTTCAAGACATTTTCAATGAGTTCTCCAGAAATGACCAAATCTGCA
AAATTTCTGGTTGCATTCCCCATTAGATGACTTAAATAAGGAGCTTTTAACGTATGGACAAACAT
TACTGTGGCCTCTTTTTCTGATAGAGGTGGCTGAACTTGGGCTGCTGTGTCACGCCATCTCTGAG
CATACTGTCTGAATGTTTCGTTATTTTTTTTCTCCAAATTTTGGAGAGTCCATCTATCAGTGACC
ATGTCTGTTACGTGGCGGTACTGCTCTAGGAATGCCTTAGCCAGATCTTTCCAGGATCTAATGTT
GGCTTTGGTCAATTGAGTATACCATTTTAAAGTTGGTCATGTCAAACTATCTTGAAAGCAGTGAA
TTAACAATTTCTCGTCTTTCACATATCCTGCCATTCTGTGACAAAACATAGT
Found at i:7168158 original size:15 final size:15
Alignment explanation
Indices: 7168135--7168166 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7168125 TGCAATGAAT
7168135 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
7168150 AATGCATGTATGCAA
1 AATGAATGTATGCAA
7168165 AA
1 AA
7168167 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:7171525 original size:26 final size:28
Alignment explanation
Indices: 7171468--7171540 Score: 71
Period size: 26 Copynumber: 2.7 Consensus size: 28
7171458 TGAAATAATA
* *
7171468 TATATATAAATACTATGAAAATAATAAG
1 TATATATAAATACTATGAAAAAAAGAAG
* *
7171496 TATATATAAA-A-TTTGAAAAAAAGAAT
1 TATATATAAATACTATGAAAAAAAGAAG
*
7171522 TATAGATTAAATA-TATGAA
1 TATATA-TAAATACTATGAA
7171541 TTTTTAATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
26 16 0.43
27 5 0.14
28 16 0.43
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (28 bp):
TATATATAAATACTATGAAAAAAAGAAG
Found at i:7172236 original size:3 final size:3
Alignment explanation
Indices: 7172228--7172255 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7172218 ATATTTATAC
7172228 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7172256 ATATAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7172278 original size:27 final size:26
Alignment explanation
Indices: 7172239--7172303 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 26
7172229 TAATAATAAT
*
7172239 AATAATAATAATAAT-AAATATAAAAC
1 AATAATAAAAATAATGAAAT-TAAAAC
7172265 AATAACTAAAAATAATGAAATTAAAAC
1 AATAA-TAAAAATAATGAAATTAAAAC
*
7172292 TATAAATAAAAA
1 AAT-AATAAAAA
7172304 AACTAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 5 0.15
27 23 0.68
28 6 0.18
ACGTcount: A:0.69, C:0.05, G:0.02, T:0.25
Consensus pattern (26 bp):
AATAATAAAAATAATGAAATTAAAAC
Found at i:7173650 original size:6 final size:6
Alignment explanation
Indices: 7173641--7173679 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
7173631 AATAATAAAA
*
7173641 ATAATT ATAATT ATAATT ATAATT ATAATA ATAA-T ATAA
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT ATAA
7173680 ATAATATTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
ATAATT
Found at i:7173656 original size:18 final size:18
Alignment explanation
Indices: 7173630--7173674 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
7173620 TAATATTTAT
7173630 TAATAATAAAAATAATTA
1 TAATAATAAAAATAATTA
* **
7173648 TAATTATAATTATAATTA
1 TAATAATAAAAATAATTA
7173666 TAATAATAA
1 TAATAATAA
7173675 TATAAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATAATAAAAATAATTA
Found at i:7173682 original size:12 final size:13
Alignment explanation
Indices: 7173617--7173685 Score: 58
Period size: 12 Copynumber: 5.6 Consensus size: 13
7173607 ATTGGGCCTG
*
7173617 TAATAAT-ATTTA
1 TAATAATAATATA
*
7173629 TTAATAATAA-AAA
1 -TAATAATAATATA
*
7173642 TAATTATAAT-TA
1 TAATAATAATATA
*
7173654 TAATTATAAT-TA
1 TAATAATAATATA
7173666 TAATAATAATATA
1 TAATAATAATATA
7173679 -AATAATA
1 TAATAATA
7173686 TTCAAATGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
12 37 0.77
13 10 0.21
14 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:7173922 original size:44 final size:45
Alignment explanation
Indices: 7173714--7173922 Score: 251
Period size: 45 Copynumber: 4.7 Consensus size: 45
7173704 GTATCTTCAA
* * * *
7173714 GGTGTATTATCAACATAAATGTATGCTAGAGTTGAAATGCATATG
1 GGTGCATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATG
* * * * *
7173759 GGTGCATTATCAATAGAAGAGCATGCTAGAGTTGAAATGTATATG
1 GGTGCATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATG
* * * *
7173804 GGTACATTATCAACAGAAAAGTATACTATGGTTGAAATGTATATG
1 GGTGCATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATG
* *
7173849 GGTACATTATCAACA-AAAAGTATACTATAGTTGAAATGCATATG
1 GGTGCATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATG
* *
7173893 GGTGCATTATCAACATAAAAG-ATGTTATAG
1 GGTGCATTATCAACAGAAAAGTATGCTATAG
7173923 ATCAAAGTGT
Statistics
Matches: 144, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
44 48 0.33
45 96 0.67
ACGTcount: A:0.39, C:0.10, G:0.21, T:0.31
Consensus pattern (45 bp):
GGTGCATTATCAACAGAAAAGTATGCTATAGTTGAAATGCATATG
Found at i:7173947 original size:89 final size:88
Alignment explanation
Indices: 7173788--7173952 Score: 199
Period size: 89 Copynumber: 1.9 Consensus size: 88
7173778 AGCATGCTAG
* * * *
7173788 AGTTGAAATGTATATGGGTACATTATCAACAGAAAAGTATACTATGGTTGAAATGTATATGGGTA
1 AGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACTATAGATCAAATGTATATGGGTA
*
7173853 CATTATCAACAAAAAGTATACTAT
66 -ATTATAAACAAAAAGTATACTAT
* * **
7173877 AGTTGAAATGCATATGGGTGCATTATCAACATAAAAG-ATGTTATAGATCAAAGTGTATAATGGT
1 AGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACTATAGATCAAA-TGTAT-ATGG-
7173941 GT-ATTATAAACA
63 GTAATTATAAACA
7173953 TAAATGGAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
88 10 0.16
89 48 0.75
90 4 0.06
91 2 0.03
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (88 bp):
AGTTGAAATGCATATGGGTACATTATCAACAGAAAAGTATACTATAGATCAAATGTATATGGGTA
ATTATAAACAAAAAGTATACTAT
Found at i:7176885 original size:36 final size:36
Alignment explanation
Indices: 7176829--7176898 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
7176819 ATGTAGTCTC
* * *
7176829 TGCAGGTTCAACTCCAATCAAGCTGGTAATTCCTCA
1 TGCAAGTTCAACACCAATCAAGATGGTAATTCCTCA
*
7176865 TGCAAGTTCAACACCGATCAAGATGGTAATTCCT
1 TGCAAGTTCAACACCAATCAAGATGGTAATTCCT
7176899 TATGGACCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (36 bp):
TGCAAGTTCAACACCAATCAAGATGGTAATTCCTCA
Found at i:7178375 original size:17 final size:17
Alignment explanation
Indices: 7178349--7178383 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7178339 TTACTTAAAT
7178349 AACCTGATTTAAAAGGA
1 AACCTGATTTAAAAGGA
* *
7178366 AACCTTATTTGAAAGGA
1 AACCTGATTTAAAAGGA
7178383 A
1 A
7178384 TCTGAATGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (17 bp):
AACCTGATTTAAAAGGA
Found at i:7180810 original size:15 final size:12
Alignment explanation
Indices: 7180779--7180814 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
7180769 AATCCAATCT
7180779 GAAGAAGAAAAG
1 GAAGAAGAAAAG
7180791 GAAGAAGAAAAG
1 GAAGAAGAAAAG
*
7180803 GAAAAAGAAAAG
1 GAAGAAGAAAAG
7180815 AGGATCTCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAG
Found at i:7199693 original size:20 final size:20
Alignment explanation
Indices: 7199664--7199702 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7199654 AGAGCCCATA
*
7199664 TAGGATCATATAGATGCATT
1 TAGGAACATATAGATGCATT
*
7199684 TAGGAACATATAGTTGCAT
1 TAGGAACATATAGATGCAT
7199703 GAGGTGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
TAGGAACATATAGATGCATT
Found at i:7202112 original size:47 final size:48
Alignment explanation
Indices: 7202054--7202154 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 48
7202044 CACTACGTAC
*
7202054 TGTTTACATTTT-TCCTT-TATGACAT-ATATTCATACCAATTATGCAT
1 TGTTTACATTTTATACTTATATGACATCAT-TTCATACCAATTATGCAT
* * *
7202100 TGTTGTACATTTTATATTTATATGACATCCTTTCATACCACTTATGCAT
1 TGTT-TACATTTTATACTTATATGACATCATTTCATACCAATTATGCAT
*
7202149 CGTTTA
1 TGTTTA
7202155 TATCCAAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
46 4 0.09
47 8 0.17
48 5 0.11
49 28 0.61
50 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.48
Consensus pattern (48 bp):
TGTTTACATTTTATACTTATATGACATCATTTCATACCAATTATGCAT
Found at i:7202372 original size:16 final size:16
Alignment explanation
Indices: 7202350--7202387 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
7202340 GAATTTTTTC
7202350 ATATTATT-TAT-TAT
1 ATATTATTATATATAT
7202364 -TATTATTATATATAT
1 ATATTATTATATATAT
7202379 ATATTATTA
1 ATATTATTA
7202388 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.33
14 3 0.14
15 3 0.14
16 8 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTATTATATATAT
Found at i:7203652 original size:12 final size:11
Alignment explanation
Indices: 7203616--7203649 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7203606 TTATGTTTAA
*
7203616 ATTATTACTTTC
1 ATTATTA-TTTT
7203628 ATTATTATTTT
1 ATTATTATTTT
7203639 ATTATTATTTT
1 ATTATTATTTT
7203650 TATCTTAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:7209162 original size:15 final size:14
Alignment explanation
Indices: 7209144--7209190 Score: 76
Period size: 15 Copynumber: 3.2 Consensus size: 14
7209134 ATAAAAAAAG
7209144 AAAGGAAAAAAGGAA
1 AAAGG-AAAAAGGAA
7209159 AAAGGAAAAAGGAA
1 AAAGGAAAAAGGAA
7209173 AAAGGGAAAAAGGAA
1 AAA-GGAAAAAGGAA
7209188 AAA
1 AAA
7209191 ATTGAATCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AAAGGAAAAAGGAA
Found at i:7209169 original size:22 final size:22
Alignment explanation
Indices: 7209144--7209190 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
7209134 ATAAAAAAAG
7209144 AAAGGAAAAAAGGAAAAAGGAA
1 AAAGGAAAAAAGGAAAAAGGAA
*
7209166 AAAGGAAAAAGGGAAAAAGGAA
1 AAAGGAAAAAAGGAAAAAGGAA
7209188 AAA
1 AAA
7209191 ATTGAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (22 bp):
AAAGGAAAAAAGGAAAAAGGAA
Found at i:7209191 original size:8 final size:7
Alignment explanation
Indices: 7209144--7209190 Score: 76
Period size: 7 Copynumber: 6.4 Consensus size: 7
7209134 ATAAAAAAAG
7209144 AAAGGAAA
1 AAAGG-AA
7209152 AAAGGAA
1 AAAGGAA
7209159 AAAGGAA
1 AAAGGAA
7209166 AAAGGAA
1 AAAGGAA
7209173 AAAGGGAA
1 AAA-GGAA
7209181 AAAGGAA
1 AAAGGAA
7209188 AAA
1 AAA
7209191 ATTGAATCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
7 26 0.68
8 12 0.32
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (7 bp):
AAAGGAA
Found at i:7211756 original size:22 final size:22
Alignment explanation
Indices: 7211731--7211785 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
7211721 ATCCACACTC
7211731 TTCAAAGATAATAGATTCTCTA
1 TTCAAAGATAATAGATTCTCTA
* *
7211753 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATAATAGATTCTCTA
7211775 TTCAAAGATAA
1 TTCAAAGATAA
7211786 GCTTTATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (22 bp):
TTCAAAGATAATAGATTCTCTA
Found at i:7212595 original size:45 final size:45
Alignment explanation
Indices: 7212544--7212730 Score: 268
Period size: 45 Copynumber: 4.2 Consensus size: 45
7212534 TTTTTGATAT
*
7212544 TTTCAAAACCTTCGGGTCATCTGTAAGACCTTCAGTGCATGATGC
1 TTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGC
* * *
7212589 TTTCAAAACCATCGAGTCATCTGTAAGACCTTCAGTGCATGATGC
1 TTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGC
* *
7212634 TTTCAAAACCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGT
1 TTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGC
* ** * *
7212679 TTTCAAAACCTTCGGGCCATCCATAAGACCTACAGTGCAGGAT-T
1 TTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGC
7212723 TTTCAAAA
1 TTTCAAAA
7212731 AAGCCTTCGG
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
44 9 0.07
45 121 0.93
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (45 bp):
TTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGC
Found at i:7212799 original size:166 final size:169
Alignment explanation
Indices: 7212589--7212899 Score: 475
Period size: 166 Copynumber: 1.9 Consensus size: 169
7212579 TGCATGATGC
*
7212589 TTTCAAAACCATCGAGTCATCTGTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
1 TTTCAAAACCATCGAGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
** * *
7212654 CTGTAAGCCCTACAGTGCATGATGTTTTCAA-AA-CCTTCGGGCCATCCATAAGACCTACAGTGC
66 CCATAAGACCTACAGTGCAGGATGTTTTCAAGAAGCCTTCGGGCCATCCATAAGACCTACAGTGC
*
7212717 AGGAT-TTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
131 AGGATGCTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
* *
7212755 TTTCAAAACCTTCGGGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
1 TTTCAAAACCATCGAGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
** * * *
7212820 CCATAAGACCTGTAGTGCAGGATGTTTTCAAGAAGCCTTCGGGTCATCTATAAGACCTTCAGTGC
66 CCATAAGACCTACAGTGCAGGATGTTTTCAAGAAGCCTTCGGGCCATCCATAAGACCTACAGTGC
*
7212885 ATGATGCTTTCAAAA
131 AGGATGCTTTCAAAA
7212900 CCTTCGGGTC
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
166 87 0.68
167 2 0.02
168 31 0.24
169 8 0.06
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (169 bp):
TTTCAAAACCATCGAGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
CCATAAGACCTACAGTGCAGGATGTTTTCAAGAAGCCTTCGGGCCATCCATAAGACCTACAGTGC
AGGATGCTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
Found at i:7212806 original size:45 final size:45
Alignment explanation
Indices: 7212755--7212944 Score: 260
Period size: 45 Copynumber: 4.2 Consensus size: 45
7212745 TTTTTGATAT
*
7212755 TTTCAAAACCTTCGGGTCATCTC-TAAGACCT-TCAGTGCATGATGC
1 TTTCAAAACCTTCGGGTCATC-CATAAGACCTGT-AGTGCAGGATGC
*
7212800 TTTCAAAACCTTCGGGTCATCCATAAGACCTGTAGTGCAGGATGT
1 TTTCAAAACCTTCGGGTCATCCATAAGACCTGTAGTGCAGGATGC
* *
7212845 TTTCAAGAAGCCTTCGGGTCATCTATAAGACCT-TCAGTGCATGATGC
1 TTTCAA-AA-CCTTCGGGTCATCCATAAGACCTGT-AGTGCAGGATGC
*
7212892 TTTCAAAACCTTCGGGTCATCCATAAGACCTGTAGTGCAGGATGT
1 TTTCAAAACCTTCGGGTCATCCATAAGACCTGTAGTGCAGGATGC
*
7212937 TTTTAAAA
1 TTTCAAAA
7212945 AAGCCTTCGG
Statistics
Matches: 130, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
44 1 0.01
45 84 0.65
46 7 0.05
47 38 0.29
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (45 bp):
TTTCAAAACCTTCGGGTCATCCATAAGACCTGTAGTGCAGGATGC
Found at i:7212856 original size:121 final size:121
Alignment explanation
Indices: 7212634--7212862 Score: 370
Period size: 121 Copynumber: 1.9 Consensus size: 121
7212624 TGCATGATGC
* * *
7212634 TTTCAAAACCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGCCAT
1 TTTCAAAACCTTCGGGTCATCTCTAAGACCTACAGTGCATGATGCTTTCAAAACCTTCGGGCCAT
7212699 CCATAAGACCTACAGTGCAGGATTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
66 CCATAAGACCTACAGTGCAGGATTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
* *
7212755 TTTCAAAACCTTCGGGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTCAT
1 TTTCAAAACCTTCGGGTCATCTCTAAGACCTACAGTGCATGATGCTTTCAAAACCTTCGGGCCAT
** *
7212820 CCATAAGACCTGTAGTGCAGGATGTTTTC-AAGAAGCCTTCGGG
66 CCATAAGACCTACAGTGCAGGAT-TTTTCAAAAAAGCCTTCGGG
7212863 TCATCTATAA
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
121 94 0.95
122 5 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (121 bp):
TTTCAAAACCTTCGGGTCATCTCTAAGACCTACAGTGCATGATGCTTTCAAAACCTTCGGGCCAT
CCATAAGACCTACAGTGCAGGATTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATAT
Found at i:7212920 original size:92 final size:92
Alignment explanation
Indices: 7212754--7212955 Score: 354
Period size: 92 Copynumber: 2.2 Consensus size: 92
7212744 CTTTTTGATA
*
7212754 TTTTCAAAA-CCTTCGGGTCATCTCTAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTC
1 TTTTCAAAAGCCTTCGGGTCATCTATAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTC
7212818 ATCCATAAGACCTGTAGTGCAGGATG-
66 ATCCATAAGACCTGTAGTGCAGGATGT
7212844 TTTTCAAGAAGCCTTCGGGTCATCTATAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGT
1 TTTTCAA-AAGCCTTCGGGTCATCTATAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGT
7212909 CATCCATAAGACCTGTAGTGCAGGATGT
65 CATCCATAAGACCTGTAGTGCAGGATGT
*
7212937 TTTTAAAAAAGCCTTCGGG
1 TTTT-CAAAAGCCTTCGGG
7212956 AGCTTTTTGA
Statistics
Matches: 106, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
90 7 0.07
91 2 0.02
92 80 0.75
93 15 0.14
94 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (92 bp):
TTTTCAAAAGCCTTCGGGTCATCTATAAGACCTTCAGTGCATGATGCTTTCAAAACCTTCGGGTC
ATCCATAAGACCTGTAGTGCAGGATGT
Found at i:7213017 original size:45 final size:45
Alignment explanation
Indices: 7212963--7213078 Score: 171
Period size: 45 Copynumber: 2.6 Consensus size: 45
7212953 GGGAGCTTTT
* * *
7212963 TGATATTTTCAAAAGCTTCGGGTCATCTGTAAGCCCT-TCAGTGGA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTAT-AGTGCA
*
7213008 TGATGTTTTCAAAACCATCGGGTCATCTGTAAGCCCTATAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTATAGTGCA
*
7213053 TGATGTTATCAAAACCTTCGGGTCAT
1 TGATGTTTTCAAAACCTTCGGGTCAT
7213079 TCATAAGACC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 63 0.98
46 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTATAGTGCA
Found at i:7213238 original size:3 final size:3
Alignment explanation
Indices: 7213230--7213288 Score: 102
Period size: 3 Copynumber: 20.0 Consensus size: 3
7213220 TTTTTTCATT
*
7213230 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7213278 TTA TT- TTA TTA
1 TTA TTA TTA TTA
7213289 CAAAACAGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7214619 original size:29 final size:30
Alignment explanation
Indices: 7214578--7214637 Score: 61
Period size: 29 Copynumber: 2.0 Consensus size: 30
7214568 TTATAATTTG
* * *
7214578 ACCATTAATTTTTA-TATAATTTTCATTTTA
1 ACCATTAAGTTTTATTA-ATTTTACATTTTA
*
7214608 ACCA-TAAGTTTTATTATTTTTACATTTTA
1 ACCATTAAGTTTTATTAATTTTACATTTTA
7214637 A
1 A
7214638 ACTTATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (30 bp):
ACCATTAAGTTTTATTAATTTTACATTTTA
Found at i:7214999 original size:157 final size:147
Alignment explanation
Indices: 7214800--7215205 Score: 429
Period size: 148 Copynumber: 2.7 Consensus size: 147
7214790 GTTTAAATAA
* * * * *
7214800 TAATATTTATTTA-TTTTTAATATCAAAGAAAAGGGC-AGTCTTAAAGCAACTAGATGTCCTATT
1 TAATATTTATTTATTTTTTAATAT-TAAGAAATGGGCTA-TCTTAAAGCACCTAGAAGTCCTTTT
* * *
7214863 CTGGTATTTTAAATAAATAAATATCTTACTTATAAAAACTAGAAAATACATATTGTTTTATTTAA
64 CTGATATTTTAAATAAATAAATATCTTATTTATAAAAACTA-AAAATAC-TA---ATTTATTTAA
7214928 ATTATTTTCTTAGAAAAATAATCATATT
124 ATTA-TTT-TTAGAAAAAT-ATCATA-T
* *
7214956 TGAATATTTATTTATTTTTTAATATTAAGAAATGGGCTCTCTTAAAGCACCTAGAAGTCATTTTC
1 T-AATATTTATTTATTTTTTAATATTAAGAAATGGGCTATCTTAAAGCACCTAGAAGTCCTTTTC
* * * * * * * *
7215021 TAATATTCTTAAATAAATAAATATCCTATTTTTATAAATTATATATACTAATTTATTTTAATTAT
65 TGATATT-TTAAATAAATAAATATCTTATTTATAAAAACTAAAAATACTAATTTATTTAAATTAT
* * *
7215086 TTTTAGAGAAATGTCTTAT
129 TTTTAGAAAAATATCATAT
* *
7215105 TAATATTTATTTATTTTTTAACATTAAGAAATGGGTTATCTTAAAGCACCTAGAAGTCCTTTTCT
1 TAATATTTATTTATTTTTTAATATTAAGAAATGGGCTATCTTAAAGCACCTAGAAGTCCTTTTCT
** * *
7215170 GATATTTCTATGTAAATGAATATATTATTTATAAAA
66 GATATTT-TAAATAAATAAATATCTTATTTATAAAA
7215206 TTATAAATAT
Statistics
Matches: 212, Mismatches: 33, Indels: 18
0.81 0.13 0.07
Matches are distributed among these distances:
147 1 0.00
148 86 0.41
149 2 0.01
150 4 0.02
151 9 0.04
152 3 0.01
153 12 0.06
156 3 0.01
157 54 0.25
158 38 0.18
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (147 bp):
TAATATTTATTTATTTTTTAATATTAAGAAATGGGCTATCTTAAAGCACCTAGAAGTCCTTTTCT
GATATTTTAAATAAATAAATATCTTATTTATAAAAACTAAAAATACTAATTTATTTAAATTATTT
TTAGAAAAATATCATAT
Found at i:7216765 original size:22 final size:22
Alignment explanation
Indices: 7216737--7216795 Score: 100
Period size: 22 Copynumber: 2.7 Consensus size: 22
7216727 TATCTACATT
7216737 CTTCAAAGATGATAGATTCTCC
1 CTTCAAAGATGATAGATTCTCC
*
7216759 CTTCAAAGATGATAGATTCTCT
1 CTTCAAAGATGATAGATTCTCC
*
7216781 TTTCAAAGATGATAG
1 CTTCAAAGATGATAG
7216796 CTTTACTGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (22 bp):
CTTCAAAGATGATAGATTCTCC
Found at i:7217445 original size:45 final size:45
Alignment explanation
Indices: 7217376--7217556 Score: 218
Period size: 45 Copynumber: 4.0 Consensus size: 45
7217366 CTATTTCCCA
* * * **
7217376 CATCTGAAAGCACTTCAATGCATGATGTTTTCAAAACCTTCGTTT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
7217421 TATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* *
7217466 CATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCCTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
** * * *
7217511 CATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGG
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCGGG
7217557 AGCTTTTTGA
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
45 105 0.91
46 4 0.03
47 7 0.06
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Found at i:7217618 original size:45 final size:45
Alignment explanation
Indices: 7217564--7217667 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 45
7217554 GGGAGCTTTT
* * * ** * *
7217564 TGATATTTTCAAAATCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCAGGTCATCCATAAGACCTGCAGTGCA
7217609 TGATGTTTTCAAAACCTTCAGGTCATCCATAAGACCTGCAGTGCA
1 TGATGTTTTCAAAACCTTCAGGTCATCCATAAGACCTGCAGTGCA
*
7217654 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
7217668 AGCCTTCGAG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCAGGTCATCCATAAGACCTGCAGTGCA
Found at i:7217662 original size:121 final size:121
Alignment explanation
Indices: 7217443--7218143 Score: 646
Period size: 121 Copynumber: 5.7 Consensus size: 121
7217433 CTTTAGTGCA
* * *
7217443 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCCTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
7217508 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
66 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
* *
7217564 TGATATTTTCAAAATCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCA
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
*
7217629 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTT
66 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
* *
7217685 TGATATTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTTG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
** * * * * * * * *
7217750 GGTCATCTGTAAGCCCTTCAGTACATGATATTTTC-AAAA-CCTTTTGGTCATCTTTAAGCCCTT
66 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCC-TTCGG-GAGC-TT------TT
* ** * * * *
7217813 CAATGCATGATGTTTTCAAAACCTTCGTGTCATCCATAAGACCTGCAGTGCAGGATGCTTTCAAA
1 ---TG-AT-A--TTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AA
* *** * * ** * *** ** ***
7217878 AAGCCTTCGGGAGC-TTTTTGATATTTTCAAAACCATCGG--GTCATCTGTAAGCCCTTC---AG
58 AA-CCTTCGGG-TCATCCATAAGACCTGC-AGTGCA--GGATGTTTTCAAAAAG-CCTTCGGGAG
***
7217937 -TGCA
117 CTTTT
* * * * * *
7217941 TGATGTTTTTAAAACCTTGGGGTCATCTGTAAACCCTTCAGTGCATGCTTTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* *
7218006 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCTGGAGCTTTT
66 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
*
7218062 TGATATTTTCAAAACCTTCGGGTCATCAGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
7218127 GGTCATCCATAAGACCT
66 GGTCATCCATAAGACCT
7218144 ATAGTGCAAA
Statistics
Matches: 456, Mismatches: 92, Indels: 64
0.75 0.15 0.10
Matches are distributed among these distances:
116 2 0.00
117 5 0.01
118 11 0.02
119 16 0.04
120 13 0.03
121 320 0.70
122 2 0.00
124 2 0.00
125 2 0.00
128 2 0.00
131 2 0.00
132 2 0.00
133 1 0.00
134 1 0.00
135 42 0.09
136 5 0.01
137 14 0.03
138 7 0.02
139 2 0.00
140 3 0.01
141 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (121 bp):
TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
Found at i:7217739 original size:45 final size:45
Alignment explanation
Indices: 7217685--7217878 Score: 262
Period size: 45 Copynumber: 4.3 Consensus size: 45
7217675 GAGAGCTTTT
*
7217685 TGATATTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
*
7217730 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTACA
1 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
* * * *
7217775 TGATATTTTCAAAACCTTTTGGTCATCTTTAAGCCCTTCAATGCA
1 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
* * ** * *
7217820 TGATGTTTTCAAAACCTTCGTGTCATCCATAAGACCTGCAGTGCA
1 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
* *
7217865 GGATGCTTTCAAAA
1 TGATGTTTTCAAAA
7217879 AGCCTTCGGG
Statistics
Matches: 131, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 131 1.00
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.35
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:7217810 original size:211 final size:211
Alignment explanation
Indices: 7217564--7218044 Score: 766
Period size: 211 Copynumber: 2.3 Consensus size: 211
7217554 GGGAGCTTTT
* *
7217564 TGATATTTTCAAAATCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCA
1 TGATATTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTC-
*
7217629 G-GTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTT
65 GTGTCATCCATAAGACCTGCAGTGCAGGATGCTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTT
* * *
7217693 TCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTTGGGTCATCT
130 TCAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTGGGGTCATCT
*
7217758 GTAAGCCCTTCAGTACA
195 GTAAACCCTTCAGTACA
** * *
7217775 TGATATTTTCAAAACCTTTTGGTCATCTTTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
*
7217840 TGTCATCCATAAGACCTGCAGTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTTTGATATTTT
66 TGTCATCCATAAGACCTGCAGTGCAGGATGCTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTT
*
7217905 CAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAACCTTGGGGTCATCTG
131 CAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTGGGGTCATCTG
*
7217970 TAAACCCTTCAGTGCA
196 TAAACCCTTCAGTACA
* * * * * *
7217986 TGCTTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAA
1 TGATATTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAA
7218045 AGCCTTCTGG
Statistics
Matches: 246, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
210 1 0.00
211 245 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (211 bp):
TGATATTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
TGTCATCCATAAGACCTGCAGTGCAGGATGCTTTCAAAAAGCCTTCGAGAGCTTTTTGATATTTT
CAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTGGGGTCATCTG
TAAACCCTTCAGTACA
Found at i:7217907 original size:166 final size:166
Alignment explanation
Indices: 7217398--7218133 Score: 858
Period size: 166 Copynumber: 4.4 Consensus size: 166
7217388 CTTCAATGCA
* ** * *
7217398 TGATGTTTTCAAAACCTTCGTTTTATCTGTAAGCCCTTTAGTGCATGATGTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* *
7217463 GGTCATCTGTAAGCCCTTCAGTGCATGATATTTTCAAAACCCTCGGGTCATCCATAAGACCTGCA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTGCA
*
7217528 GTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTT
131 GTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTT
* *
7217564 TGATATTTTCAAAATCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCA
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
** * * * *** * * **
7217629 GGTCATCCATAAGACCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAG-C-TTTTTGATATT
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCG-G-GTCATCCATAAGACC
* *** * * * *** ***
7217692 TTCAAAACCTTTGGGT-C-ATCTGTAAGCCCTTC---AG-TGCA
127 TGC-AGTGC--AGGATGCTTTCAAAAAG-CCTTCGGGAGCTTTT
* * * * **
7217730 TGATGTTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCAGTACATGATATTTTCAAAACCTTTT
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* * *
7217795 GGTCATCTTTAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCGTGTCATCCATAAGACCTGCA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTGCA
7217860 GTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTT
131 GTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTT
* * *
7217896 TGATATTTTCAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTTAAAACCTTGG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
* * * *
7217961 GGTCATCTGTAAACCCTTCAGTGCATGCTTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTGCA
* *
7218026 GTGCAGGATGTTTTCAAAAAGCCTTCTGGAGCTTTT
131 GTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTT
*
7218062 TGATATTTTCAAAACCTTCGGGTCATCAGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
1 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
7218127 GGTCATC
66 GGTCATC
7218134 CATAAGACCT
Statistics
Matches: 464, Mismatches: 90, Indels: 32
0.79 0.15 0.05
Matches are distributed among these distances:
161 3 0.01
162 7 0.02
163 8 0.02
164 12 0.03
165 6 0.01
166 393 0.85
167 6 0.01
168 11 0.02
169 9 0.02
170 6 0.01
171 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (166 bp):
TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTGCA
GTGCAGGATGCTTTCAAAAAGCCTTCGGGAGCTTTT
Found at i:7217955 original size:45 final size:45
Alignment explanation
Indices: 7217896--7218044 Score: 190
Period size: 45 Copynumber: 3.3 Consensus size: 45
7217886 GGGAGCTTTT
* *
7217896 TGATATTTTCAAAACCATCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
7217941 TGATGTTTTTAAAACCTTGGGGTCATCTGTAAACCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * ** * *
7217986 TGCTTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
7218031 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
7218045 AGCCTTCTGG
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:7218150 original size:45 final size:45
Alignment explanation
Indices: 7218062--7218151 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
7218052 TGGAGCTTTT
*
7218062 TGATATTTTCAAAACCTTCGGGTCATCAGTAAGCCCTTCAGTGCA
1 TGATATTTTCAAAACCTTCGGGTCATCAGTAAGACCTTCAGTGCA
*
7218107 TGATGTTTTCAAAACCTTCGGGTCATCCA-TAAGACCTAT-AGTGCA
1 TGATATTTTCAAAACCTTCGGGTCAT-CAGTAAGACCT-TCAGTGCA
7218152 AAATGATAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 38 0.93
46 3 0.07
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
TGATATTTTCAAAACCTTCGGGTCATCAGTAAGACCTTCAGTGCA
Found at i:7219422 original size:41 final size:41
Alignment explanation
Indices: 7219368--7219457 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
7219358 AGGGATTTGA
* *
7219368 AGAGAGAGGCGAGAGAGAATGTCTATTTCTCTCTTTTAGAG
1 AGAGAGAGACGAGAGAGAATGTCTATTTATCTCTTTTAGAG
7219409 AGAGAGAGACGAGAGAGAATGTCTATTTATCTCTTTTAGAG
1 AGAGAGAGACGAGAGAGAATGTCTATTTATCTCTTTTAGAG
7219450 AGAGAGAG
1 AGAGAGAG
7219458 GGAATTTTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (41 bp):
AGAGAGAGACGAGAGAGAATGTCTATTTATCTCTTTTAGAG
Found at i:7220112 original size:81 final size:80
Alignment explanation
Indices: 7219977--7220799 Score: 1128
Period size: 81 Copynumber: 10.2 Consensus size: 80
7219967 GGTTACAACA
* *
7219977 CACAGCTAGGCCATTTATCTTTTACTCAATGGTCTTTAACCATTCATCAAACTGGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
7220042 ACCTTTCTGCAAAATG
66 ACCTTTCTGC-AAATG
* * *
7220058 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAATCGTTCATCTAACTGGCATAATTGGC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
*
7220123 ACCTTTCTTCCAAATG
66 ACCTTTC-TGCAAATG
*
7220139 CACAGCTAGGCCATTTATCTTTTACTCAACAGTCTTTAACCATTCATCTAACTGGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
7220204 ACCTTTCTGCAAAATG
66 ACCTTTCTGC-AAATG
* ** * *
7220220 AACAGCTAGGCCATTTATCTTTTACTCAGTGGTTTTTAACCATTAATCTAACTGGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
7220285 ACCTTTCTGTCAAATG
66 ACCTTTCTG-CAAATG
* ** * *
7220301 CACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACTGTTCATCTAACTAGCATAATTGAT
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
*
7220366 ACATTTTCTGTCAAATG
66 AC-CTTTCTG-CAAATG
**
7220383 CACAGCTAGATCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
* *
7220448 ACATTTCTATCAAATG
66 ACCTTTCT-GCAAATG
* **
7220464 CA-AGGCTATGCCATTTATCTTTTACTCATTGGTCTTTAACCATTCATCTAACTGGCATAATTGA
1 CACA-GCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGA
* *
7220528 CACATTTCTTCCAAATG
65 CACCTTTC-TGCAAATG
* * * *
7220545 CACAACTAGGCCATTTATCTTTCACTCAACGGTCTTTAACCGTTCATCTAACTGGCATAATTGTC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
*
7220610 TCCTTTCTATG-AAATG
66 ACCTTTC--TGCAAATG
* * *
7220626 CACAACTAGGCCATTTATCTTTTACTCAACTGTCTTTAACCATTCATCTAACTAGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
*
7220691 ACTTTTCTGTCAAATG
66 ACCTTTCTG-CAAATG
* * *
7220707 CACAGGTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTTGCATAATTGAC
1 CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
* * *
7220772 ACATTTTTGTAAAATG
66 ACCTTTCTG-CAAATG
*
7220788 CACAGTTAGGCC
1 CACAGCTAGGCC
7220800 TCAAAGGCAC
Statistics
Matches: 661, Mismatches: 70, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
79 2 0.00
80 3 0.00
81 577 0.87
82 79 0.12
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (80 bp):
CACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
ACCTTTCTGCAAATG
Found at i:7220729 original size:406 final size:405
Alignment explanation
Indices: 7219977--7220792 Score: 1260
Period size: 406 Copynumber: 2.0 Consensus size: 405
7219967 GGTTACAACA
* *
7219977 CACAGCTAGGCCATTTATCTTTTACTCAATGGTCTTTAACCATTCATCAAACTGGCATAATTGAC
1 CACAGCTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCAAACTGGCATAATTGAC
* * *
7220042 ACCTTTCTGCAAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAATCGTTCATCT
66 ACATTTCTGCAAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCT
* * * *
7220107 AACTGGCATAATTGGCACCTTTCTTCCAAATGCACAGCTAGGCCATTTATCTTTTACTCAACAGT
131 AACTGGCATAATTGACACATTTCTTCCAAATGCACAACTAGGCCATTTATCTTTCACTCAACAGT
* *
7220172 CTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGCAAAATGAACAGCTAGGCCATTTA
196 CTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTACAAAATGAACAACTAGGCCATTTA
* * *
7220237 TCTTTTACTCAGTGGTTTTTAACCATTAATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
261 TCTTTTACTCACTGGTCTTTAACCATTAATCTAACTAGCATAATTGACACCTTTCTGTCAAATGC
* *
7220302 ACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACTGTTCATCTAACTAGCATAATTGATA
326 ACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTTCATCTAACTAGCATAATTGACA
*
7220367 CATTTTCTGTCAAATG
391 CATTTT-TGTAAAATG
* *
7220383 CACAGCTAGATCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCTAACTGGCATAATTGAC
1 CACAGCTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCAAACTGGCATAATTGAC
* * **
7220448 ACATTTCTATC-AAATGCA-AGGCTATGCCATTTATCTTTTACTCATTGGTCTTTAACCATTCAT
66 ACATTTCT-GCAAAATGCACA-GCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCAT
*
7220511 CTAACTGGCATAATTGACACATTTCTTCCAAATGCACAACTAGGCCATTTATCTTTCACTCAACG
129 CTAACTGGCATAATTGACACATTTCTTCCAAATGCACAACTAGGCCATTTATCTTTCACTCAACA
* * * ** *
7220576 GTCTTTAACCGTTCATCTAACTGGCATAATTGTCTCCTTTCTATGAAATGCACAACTAGGCCATT
194 GTCTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTACAAAATGAACAACTAGGCCATT
* *
7220641 TATCTTTTACTCAACT-GTCTTTAACCATTCATCTAACTAGCATAATTGACACTTTTCTGTCAAA
259 TATCTTTTACTC-ACTGGTCTTTAACCATTAATCTAACTAGCATAATTGACACCTTTCTGTCAAA
* * *
7220705 TGCACAGGTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCGTTCATCTAACTTGCATAATTG
323 TGCACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTTCATCTAACTAGCATAATTG
7220770 ACACATTTTTGTAAAATG
388 ACACATTTTTGTAAAATG
7220788 CACAG
1 CACAG
7220793 TTAGGCCTCA
Statistics
Matches: 372, Mismatches: 35, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
405 14 0.04
406 355 0.95
407 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (405 bp):
CACAGCTAGACCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCAAACTGGCATAATTGAC
ACATTTCTGCAAAATGCACAGCTAGGCCATTTATCTTTTACTCAACGGTCTTTAACCATTCATCT
AACTGGCATAATTGACACATTTCTTCCAAATGCACAACTAGGCCATTTATCTTTCACTCAACAGT
CTTTAACCATTCATCTAACTGGCATAATTGACACCTTTCTACAAAATGAACAACTAGGCCATTTA
TCTTTTACTCACTGGTCTTTAACCATTAATCTAACTAGCATAATTGACACCTTTCTGTCAAATGC
ACAGCTAGGCCATTTATCTTTTACTCAACGATCTTTAACCGTTCATCTAACTAGCATAATTGACA
CATTTTTGTAAAATG
Found at i:7221143 original size:54 final size:55
Alignment explanation
Indices: 7221084--7221228 Score: 220
Period size: 55 Copynumber: 2.6 Consensus size: 55
7221074 TTCCTATAAG
* * *
7221084 GAAATTAATACACTTAGTATGTATTTCTT-AGTTTGCACACATAGTGCCCATACA
1 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTGCACACAAAGTGCCCATACA
* *
7221138 GAAATTCATACACTTAGTATGAATTTCTTAATTTTGCACACAAAGTGCCCATACG
1 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTGCACACAAAGTGCCCATACA
*
7221193 GAAATTCATACACTTAGTATGCATTTTCTTAAGTTT
1 GAAATTCATACACTTAGTATG-AATTTCTTAAGTTT
7221229 TTGCACGCTT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 27 0.33
55 43 0.52
56 12 0.15
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (55 bp):
GAAATTCATACACTTAGTATGAATTTCTTAAGTTTGCACACAAAGTGCCCATACA
Found at i:7225678 original size:46 final size:46
Alignment explanation
Indices: 7225624--7225768 Score: 164
Period size: 46 Copynumber: 3.1 Consensus size: 46
7225614 TTGTATTTTT
* *
7225624 TTTACATTTTTCCTTTATGACATCCTTTCATACCCATTATGTACTA
1 TTTACATTTTTCCTTTATGACATCCTTTCATACCAATTATGCACTA
* * * *
7225670 TTTACATTTTTCCTTTATGACATCCATTCATACAAATTATGCATTG
1 TTTACATTTTTCCTTTATGACATCCTTTCATACCAATTATGCACTA
* * * * *
7225716 TTGTACATTTTATATCTATATGACATCCTATCATACCACTTATGCACTG
1 TT-TACATTTT-T-CCTTTATGACATCCTTTCATACCAATTATGCACTA
7225765 TTTA
1 TTTA
7225769 TATCGAAATG
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
46 42 0.51
47 8 0.10
48 3 0.04
49 30 0.36
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.46
Consensus pattern (46 bp):
TTTACATTTTTCCTTTATGACATCCTTTCATACCAATTATGCACTA
Found at i:7225911 original size:81 final size:81
Alignment explanation
Indices: 7225820--7227015 Score: 1490
Period size: 81 Copynumber: 14.8 Consensus size: 81
7225810 GCATTTACTT
* ** ** ** ** *
7225820 TTCATCTAACTTGCACGATTAACATTTTTCTACCAAATGCACAATTAGACCATTTAAT-TTTTAC
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTT-ATCTTTTAC
*
7225884 TCAACATTCTTTAACCG
65 TCAACAGTCTTTAACCG
* ** *
7225901 TTCATCTAACTGGCATAATTGACACCTTTCTACCAAATGCATAGCTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
**
7225966 CAATGGTCTTTAACCG
66 CAACAGTCTTTAACCG
** **
7225982 TTCATCTAACTGGCATAATTGATGA-CTTTCTGTCAAATGCACAGCTAGATCATTTATCTTTTAC
1 TTCATCTAACTGGCATAATT-AACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTAC
*
7226046 TCAACAGCCTTTAACCG
65 TCAACAGTCTTTAACCG
* * * * * *
7226063 TTCATCTAACTGACATATTTGACACATTTCTGTCAAATTCACAGTTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
**
7226128 CAACAGTCTTTAACAA
66 CAACAGTCTTTAACCG
* * * * *
7226144 TTTATCTAACTGACATAATTGATACATTTCT-TCCAAATGCACAGCTAGGCCATTT-TCCTTTTA
1 TTCATCTAACTGGCATAATTAACACCTTTCTGT-CAAATGCACAGCTAGGCCATTTAT-CTTTTA
* *
7226207 CTCAACGGTCTTTAACCA
64 CTCAACAGTCTTTAACCG
*
7226225 TTCATCTAACTGGTATAATTGAA-ACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTAC
1 TTCATCTAACTGGCATAATT-AACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTAC
*
7226289 TCAAC-GATCTTTAACCA
65 TCAACAG-TCTTTAACCG
* * * * *
7226306 TTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATACACAGCT-GACGATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
**
7226370 CAACAGTCTTTAACTA
66 CAACAGTCTTTAACCG
* * ** * *
7226386 TTCATCTAACTGGAATAATTGACACCTTTCTACCAAATGCACAACTAGGCCATTTATATTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
* *
7226451 CAACGGTCTTTAACCA
66 CAACAGTCTTTAACCG
* * *
7226467 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACACCTAAGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
*
7226532 CAACGGTCTTTAACCG
66 CAACAGTCTTTAACCG
* * *
7226548 TTCATCTAACTGGCATAATTGACATCTTTCTATCAAATGCACAGCTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
* *
7226613 CAACGGTCTTTAAACG
66 CAACAGTCTTTAACCG
* *
7226629 TTCATCTAACTGGCATAATTAACACATTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
7226694 CAACAGTCTTTAACCG
66 CAACAGTCTTTAACCG
* * *
7226710 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGCACAGCTAGGCCATTTATCGTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
7226775 CAACAGTCTTTAACCG
66 CAACAGTCTTTAACCG
* * * *
7226791 TTCATCTAATTGGCATAATTGAA-ACCTTTCTGCCAAATGCATAGCTAGGCCTTTTATCTTTTAC
1 TTCATCTAACTGGCATAATT-AACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTAC
* *
7226855 TCAACGGTCTTTAACTG
65 TCAACAGTCTTTAACCG
* * * * *
7226872 TTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACATCTATGCCATTTATATTTTACT
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
* * *
7226937 CAACGGTTTTTAACTG
66 CAACAGTCTTTAACCG
* * * * *
7226953 TTCATCTAACTGGCATAATTGACACCTCTCTGTCAAATACATAGTTAGGCCATTTATCTTTTA
1 TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTA
7227016 TTTAGACCAG
Statistics
Matches: 985, Mismatches: 116, Indels: 28
0.87 0.10 0.02
Matches are distributed among these distances:
80 77 0.08
81 903 0.92
82 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (81 bp):
TTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATGCACAGCTAGGCCATTTATCTTTTACT
CAACAGTCTTTAACCG
Found at i:7227462 original size:31 final size:31
Alignment explanation
Indices: 7227421--7227479 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
7227411 ACTTAAAAGC
* * *
7227421 GTTTTGCAATATTGAGATTTAAATAATTTTA
1 GTTTTACAATACTGAAATTTAAATAATTTTA
7227452 GTTTTACAATACTGAAATTTAAATAATT
1 GTTTTACAATACTGAAATTTAAATAATT
7227480 CATACAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (31 bp):
GTTTTACAATACTGAAATTTAAATAATTTTA
Found at i:7227529 original size:22 final size:22
Alignment explanation
Indices: 7227503--7227545 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7227493 TAATAAATTA
7227503 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
7227525 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
7227546 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:7227554 original size:22 final size:22
Alignment explanation
Indices: 7227505--7227553 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7227495 ATAAATTATT
**
7227505 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
7227527 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
7227550 TAAA
1 TAAA
7227554 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:7227557 original size:54 final size:53
Alignment explanation
Indices: 7227493--7227792 Score: 369
Period size: 54 Copynumber: 5.6 Consensus size: 53
7227483 ACAACTACAA
7227493 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTAAAATAAATCAATCCATAC
** *
7227547 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAGTAATAAATCAATCCATATT
1 TAATAAATTATTTAAAATAAATCAATCCAT--ATTTA-A--AATAAATCAATCCATA-C
* * * * * *
7227606 TAAAATAAATCAATCAATACAAATAAAT---TATTTAAAATAAATCAATCCATAC
1 T--AATAAATTATTTAAAATAAATCAATCCATATTTAAAATAAATCAATCCATAC
*
7227658 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTAAAATAAATCAATCCATAC
*
7227712 TAATAAATTATTTAAAATAAATCAATCCATA-CT--AATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTAAAATAAATCAATCCATAC
7227762 TAATAAATTATTTAAAATAAATCAATCCATA
1 TAATAAATTATTTAAAATAAATCAATCCATA
7227793 CAACTACAAT
Statistics
Matches: 213, Mismatches: 21, Indels: 28
0.81 0.08 0.11
Matches are distributed among these distances:
50 66 0.31
52 2 0.01
53 18 0.08
54 82 0.38
55 3 0.01
56 5 0.02
58 17 0.08
59 1 0.00
61 19 0.09
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (53 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTAAAATAAATCAATCCATAC
Found at i:7227685 original size:32 final size:32
Alignment explanation
Indices: 7227602--7227751 Score: 203
Period size: 32 Copynumber: 5.0 Consensus size: 32
7227592 AATCAATCCA
* *
7227602 TATTTAAAATAAATCAATCAATACAAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
7227634 TATTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
7227666 TATTTAAAATAAATCAAT-C---C--AT--A-
1 TATTTAAAATAAATCAATCCATACTAATAAAT
*
7227689 T-TTTAAAATAAATCAATTCATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
7227720 TATTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTAAAATAAATCAATCCATACTAATAAAT
7227752 CAATCCATAC
Statistics
Matches: 105, Mismatches: 3, Indels: 20
0.82 0.02 0.16
Matches are distributed among these distances:
22 16 0.15
23 2 0.02
24 1 0.01
26 3 0.03
28 3 0.03
30 1 0.01
31 2 0.02
32 77 0.73
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (32 bp):
TATTTAAAATAAATCAATCCATACTAATAAAT
Found at i:7227694 original size:22 final size:22
Alignment explanation
Indices: 7227668--7227710 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7227658 TAATAAATTA
7227668 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
7227690 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
7227711 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:7227719 original size:22 final size:22
Alignment explanation
Indices: 7227670--7227718 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7227660 ATAAATTATT
**
7227670 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
7227692 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
7227715 TAAA
1 TAAA
7227719 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:7227781 original size:32 final size:31
Alignment explanation
Indices: 7227745--7227917 Score: 124
Period size: 32 Copynumber: 6.2 Consensus size: 31
7227735 AATCCATACT
7227745 AATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATACTAATAAA-TATTTAA
*
7227777 AATAAATCAATCCATAC-AACTACA-A--T--
1 AATAAATCAATCCATACTAA-TAAATATTTAA
7227803 AATAAATCAATCC--A-T-AT-----TTTAA
1 AATAAATCAATCCATACTAATAAATATTTAA
*
7227825 AATAAATCAATCCATACTAACAAATTATTTAA
1 AATAAATCAATCCATACTAATAAA-TATTTAA
7227857 AATAAATCAAT-C---C--AT--AT-TTTAA
1 AATAAATCAATCCATACTAATAAATATTTAA
7227879 AATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATACTAATAAA-TATTTAA
7227911 AATAAAT
1 AATAAAT
7227918 TATTTTAAAA
Statistics
Matches: 112, Mismatches: 3, Indels: 52
0.67 0.02 0.31
Matches are distributed among these distances:
20 1 0.01
22 30 0.27
23 3 0.03
24 3 0.03
25 1 0.01
26 16 0.14
28 4 0.04
30 2 0.02
31 4 0.04
32 48 0.43
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.32
Consensus pattern (31 bp):
AATAAATCAATCCATACTAATAAATATTTAA
Found at i:7227849 original size:22 final size:22
Alignment explanation
Indices: 7227776--7227849 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
7227766 AAATTATTTA
*
7227776 AAATAAATCAATCCATACAACTAC
1 AAATAAATCAATCCATACTA--AC
* *
7227800 AATAATAAATCAATCCATATTTTA-
1 -A-AATAAATCAATCCATA-CTAAC
7227824 AAATAAATCAATCCATACTAAC
1 AAATAAATCAATCCATACTAAC
7227846 AAAT
1 AAAT
7227850 TATTTAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 2 0.05
22 20 0.49
23 1 0.02
25 2 0.05
26 16 0.39
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAAATCAATCCATACTAAC
Found at i:7227873 original size:54 final size:54
Alignment explanation
Indices: 7227803--7227917 Score: 221
Period size: 54 Copynumber: 2.1 Consensus size: 54
7227793 CAACTACAAT
7227803 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAACAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAACAAATTATTTAA
*
7227857 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAACAAATTATTTAA
7227911 AATAAAT
1 AATAAAT
7227918 TATTTTAAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (54 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAACAAATTATTTAA
Found at i:7227878 original size:22 final size:22
Alignment explanation
Indices: 7227852--7227952 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
7227842 TAACAAATTA
7227852 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
7227874 TTTAAAATAAATCAATCCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
7227897 AATAAATTATTTAAAATAAATTAT
1 TTTAAAATAAAT-CAATCCA-TAT
7227921 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
7227943 TTTATAATAA
1 TTTAAAATAA
7227953 TTTATTTTAA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:7227926 original size:15 final size:15
Alignment explanation
Indices: 7227897--7228014 Score: 139
Period size: 15 Copynumber: 7.5 Consensus size: 15
7227887 AATCCATACT
7227897 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
7227911 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
7227926 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
7227948 AATAATTTATTTTAA
1 AATAAATTATTTTAA
*
7227963 AATAAATTATTTTAT
1 AATAAATTATTTTAA
7227978 AATAAATTATTTTAA
1 AATAAATTATTTTAA
7227993 AATAAATTATTTTAA
1 AATAAATTATTTTAA
7228008 AATAAAT
1 AATAAAT
7228015 AACCTTATTA
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
14 9 0.10
15 64 0.71
17 1 0.01
18 2 0.02
19 3 0.03
20 1 0.01
22 10 0.11
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.46
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:7227939 original size:69 final size:67
Alignment explanation
Indices: 7227846--7227999 Score: 204
Period size: 69 Copynumber: 2.3 Consensus size: 67
7227836 CCATACTAAC
*
7227846 AAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA-TTT
1 AAATTATTTTAAAATAAATCAATCCATATTTTAAAAT-AATCAAT-CATA-AAATAAATTATTTT
7227909 AAAAT
63 AAAAT
* ** ** *
7227914 AAATTATTTTAAAATAAATCAATCCATATTTTATAATAATTTATTTTAAAATAAATTATTTTATA
1 AAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTTTAAA
7227979 AT
66 AT
7227981 AAATTATTTTAAAATAAAT
1 AAATTATTTTAAAATAAAT
7228000 TATTTTAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
66 9 0.12
67 28 0.36
68 11 0.14
69 29 0.38
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.42
Consensus pattern (67 bp):
AAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTTTAAA
AT
Found at i:7228422 original size:55 final size:55
Alignment explanation
Indices: 7228258--7228444 Score: 211
Period size: 53 Copynumber: 3.4 Consensus size: 55
7228248 CAAACACCAC
* * * ** *
7228258 CTTAGTATGTATTTCTTA-ATTTACACAAATAATGCTTATACGAAAATTCATACA
1 CTTAGTATGAATTTCTTAGTTTTACACACATAATGCCCATACGGAAATTCATACA
* * *
7228312 CTTAGTATGAA-TTCTTAG-TTTGCACACATAATGTCCATACCGAAATTCATACA
1 CTTAGTATGAATTTCTTAGTTTTACACACATAATGCCCATACGGAAATTCATACA
* *
7228365 CTTAGCATGAATTTCTTAGTTTTACACACA-AAGTGCCCATACGGAAATTCATGCA
1 CTTAGTATGAATTTCTTAGTTTTACACACATAA-TGCCCATACGGAAATTCATACA
*
7228420 CTTAGTATGGATTTTCTTAAGTTTT
1 CTTAGTAT-GAATTTCTT-AGTTTT
7228445 TGCACACTTA
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
53 44 0.39
54 19 0.17
55 35 0.31
56 8 0.07
57 6 0.05
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (55 bp):
CTTAGTATGAATTTCTTAGTTTTACACACATAATGCCCATACGGAAATTCATACA
Found at i:7228845 original size:19 final size:21
Alignment explanation
Indices: 7228801--7228852 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 21
7228791 CCCCCACCAT
*
7228801 GGTATCGATACTACTATACTAG
1 GGTATCGATACTACTATA-TAC
7228823 GGTATCGATACT-CTAT-TAC
1 GGTATCGATACTACTATATAC
*
7228842 GGTACCGATAC
1 GGTATCGATAC
7228853 CATTTTTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 12 0.43
21 4 0.14
22 12 0.43
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (21 bp):
GGTATCGATACTACTATATAC
Found at i:7241099 original size:20 final size:20
Alignment explanation
Indices: 7241053--7241092 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7241043 AAGAATCGAA
* *
7241053 AGAATCGGTAGAACGGGTTG
1 AGAACCGGTAGAACGGATTG
7241073 AGAACCGGTAGAACGGATTG
1 AGAACCGGTAGAACGGATTG
7241093 GAAACCGACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.38, T:0.17
Consensus pattern (20 bp):
AGAACCGGTAGAACGGATTG
Found at i:7241260 original size:17 final size:17
Alignment explanation
Indices: 7241218--7241260 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7241208 CTTTGCTTGT
7241218 TTATTTTAGTTATATAA
1 TTATTTTAGTTATATAA
*
7241235 TTATATTTA-TTATTTAA
1 TTAT-TTTAGTTATATAA
7241252 TATATTTTA
1 T-TATTTTA
7241261 CATTTTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TTATTTTAGTTATATAA
Found at i:7241657 original size:2 final size:2
Alignment explanation
Indices: 7241650--7241683 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7241640 AAAAGAGTGT
7241650 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7241684 TACTTTGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7242347 original size:14 final size:14
Alignment explanation
Indices: 7242319--7242364 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
7242309 TCACGTCCAA
7242319 ATTTTTAAAATAAAAT
1 ATTTTT-AAA-AAAAT
**
7242335 ATTTTTTTAAAAAT
1 ATTTTTAAAAAAAT
7242349 ATTTTTAAAAAAAT
1 ATTTTTAAAAAAAT
7242363 AT
1 AT
7242365 GGTCGTGACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 19 0.73
15 1 0.04
16 6 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTTAAAAAAAT
Found at i:7243265 original size:14 final size:13
Alignment explanation
Indices: 7243239--7243263 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7243229 TAATTGAGCC
7243239 CTTTAATTTTTTA
1 CTTTAATTTTTTA
7243252 CTTTAATTTTTT
1 CTTTAATTTTTT
7243264 TATAATTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
CTTTAATTTTTTA
Found at i:7243430 original size:42 final size:41
Alignment explanation
Indices: 7243261--7243612 Score: 248
Period size: 42 Copynumber: 8.2 Consensus size: 41
7243251 ACTTTAATTT
*
7243261 TTTTATAATTGAGGCCCCTAATTTTCTATAATCAT-ACTTTTTA-
1 TTTTATAATTGA-GCTCCTAATTTT-T-TAATC-TCACTTTTTAC
* *
7243304 TCTTTATAATTGATGC-CTTTAATTTTTTTCAATCCCACTTTTTTA-
1 T-TTTATAATTGA-GCTC-CTAA-TTTTTT-AATCTCAC-TTTTTAC
* *** * * *
7243349 TATTTATAATTAATAACCATGAGTTTTTTAATCCCACTTTGTAC
1 T-TTTATAATTGAGCTCC-T-AATTTTTTAATCTCACTTTTTAC
* * *
7243393 CTTTATAATTGAGCTCCTAATTTTTTCAATCTCACTTTCTGC
1 TTTTATAATTGAGCTCCTAATTTTTT-AATCTCACTTTTTAC
* *
7243435 TTTTATAATTGAGGCCCCTAATTTTTTAATCTCACTTTATAC
1 TTTTATAATTGA-GCTCCTAATTTTTTAATCTCACTTTTTAC
* * * *
7243477 TTTTATAATTGAGGCTCTTAATTTTTTGAATATAACATTTTAC
1 TTTTATAATTGA-GCTCCTAATTTTTT-AATCTCACTTTTTAC
* * * *
7243520 -TTTAAAATTAAGACCCCTATTTTTTTAATCTCACTTTTTAC
1 TTTTATAATTGAG-CTCCTAATTTTTTAATCTCACTTTTTAC
* * *
7243561 TTTTGTAATTGAGGTCCCTAATTTTTCAATCAT-ACTTTTTAC
1 TTTTATAATTGAGCT-CCTAATTTTTTAATC-TCACTTTTTAC
7243603 TTTTATAATT
1 TTTTATAATT
7243613 TAAACCCACA
Statistics
Matches: 247, Mismatches: 45, Indels: 35
0.76 0.14 0.11
Matches are distributed among these distances:
41 20 0.08
42 121 0.49
43 45 0.18
44 31 0.13
45 29 0.12
46 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.50
Consensus pattern (41 bp):
TTTTATAATTGAGCTCCTAATTTTTTAATCTCACTTTTTAC
Found at i:7243482 original size:84 final size:85
Alignment explanation
Indices: 7243261--7243612 Score: 317
Period size: 84 Copynumber: 4.1 Consensus size: 85
7243251 ACTTTAATTT
* * * *
7243261 TTTTATAATTGAGGCCCCTAATTTTCTATAATCAT-ACTTTTTA-TCTTTATAATTGATGC-CTT
1 TTTTATAATTAAGACCCCTAATTTT-T-TAATC-TCACTTTTTACT-TTTATAATTGAGGCTC-C
*
7243323 TAATTTTTTTCAATCCCACTTTTTTA-
61 TAA-TTTTTTCAATCTCAC-TTTTTAC
* * * * * * *
7243349 TATTTATAATTAATAACCATGAGTTTTTTAATCCCACTTTGTACCTTTATAATTGA-GCTCCTAA
1 T-TTTATAATTAAGACCCCT-AATTTTTTAATCTCACTTTTTACTTTTATAATTGAGGCTCCTAA
* *
7243413 TTTTTTCAATCTCACTTTCTGC
64 TTTTTTCAATCTCACTTTTTAC
* * * *
7243435 TTTTATAATTGAGGCCCCTAATTTTTTAATCTCACTTTATACTTTTATAATTGAGGCTCTTAATT
1 TTTTATAATTAAGACCCCTAATTTTTTAATCTCACTTTTTACTTTTATAATTGAGGCTCCTAATT
* * * *
7243500 TTTTGAATATAACATTTTAC
66 TTTTCAATCTCACTTTTTAC
* * *
7243520 -TTTAAAATTAAGACCCCTATTTTTTTAATCTCACTTTTTACTTTTGTAATTGAGG-TCCCTAA-
1 TTTTATAATTAAGACCCCTAATTTTTTAATCTCACTTTTTACTTTTATAATTGAGGCT-CCTAAT
7243582 TTTTTCAATCAT-ACTTTTTAC
65 TTTTTCAATC-TCACTTTTTAC
7243603 TTTTATAATT
1 TTTTATAATT
7243613 TAAACCCACA
Statistics
Matches: 214, Mismatches: 40, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
83 17 0.08
84 93 0.43
85 40 0.19
86 15 0.07
87 5 0.02
88 25 0.12
89 14 0.07
90 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.50
Consensus pattern (85 bp):
TTTTATAATTAAGACCCCTAATTTTTTAATCTCACTTTTTACTTTTATAATTGAGGCTCCTAATT
TTTTCAATCTCACTTTTTAC
Found at i:7243501 original size:21 final size:21
Alignment explanation
Indices: 7243435--7243501 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
7243425 CACTTTCTGC
* *
7243435 TTTTATAATTGAGGCCCCTAA
1 TTTTATAATTGAGGCTCTTAA
* *
7243456 TTTTTTAATCTCA--CT-TTATA
1 TTTTATAAT-TGAGGCTCTTA-A
7243476 CTTTTATAATTGAGGCTCTTAA
1 -TTTTATAATTGAGGCTCTTAA
7243498 TTTT
1 TTTT
7243502 TTGAATATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
19 2 0.06
20 4 0.12
21 20 0.59
22 5 0.15
23 3 0.09
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (21 bp):
TTTTATAATTGAGGCTCTTAA
Found at i:7262833 original size:15 final size:15
Alignment explanation
Indices: 7262813--7262842 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7262803 TTGGTAAGAT
7262813 TTTTGGATGATTTTA
1 TTTTGGATGATTTTA
*
7262828 TTTTGGGTGATTTTA
1 TTTTGGATGATTTTA
7262843 AATACTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (15 bp):
TTTTGGATGATTTTA
Found at i:7263042 original size:2 final size:2
Alignment explanation
Indices: 7263035--7263063 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7263025 CTTCACAGGT
7263035 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7263064 TTAACAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7266721 original size:37 final size:35
Alignment explanation
Indices: 7266671--7266741 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 35
7266661 ATGATCTTGC
*
7266671 TTCACTGCACTTTTTGTGAAGGCTGGATTTGCATTGT
1 TTCACTACAC-TTTTGTGAAGGCTGGA-TTGCATTGT
* *
7266708 TTCACTACCCTTTTGTGAAGGCTTGATTGCATTG
1 TTCACTACACTTTTGTGAAGGCTGGATTGCATTG
7266742 CTTGTTTCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 8 0.26
36 15 0.48
37 8 0.26
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (35 bp):
TTCACTACACTTTTGTGAAGGCTGGATTGCATTGT
Found at i:7266825 original size:66 final size:66
Alignment explanation
Indices: 7266719--7266850 Score: 264
Period size: 66 Copynumber: 2.0 Consensus size: 66
7266709 TCACTACCCT
7266719 TTTGTGAAGGCTTGATTGCATTGCTTGTTTCTAGTACTCTTCCATGGAGATCGGATTGACTTGAA
1 TTTGTGAAGGCTTGATTGCATTGCTTGTTTCTAGTACTCTTCCATGGAGATCGGATTGACTTGAA
7266784 A
66 A
7266785 TTTGTGAAGGCTTGATTGCATTGCTTGTTTCTAGTACTCTTCCATGGAGATCGGATTGACTTGAA
1 TTTGTGAAGGCTTGATTGCATTGCTTGTTTCTAGTACTCTTCCATGGAGATCGGATTGACTTGAA
7266850 A
66 A
7266851 GAATCTGTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.21, C:0.15, G:0.24, T:0.39
Consensus pattern (66 bp):
TTTGTGAAGGCTTGATTGCATTGCTTGTTTCTAGTACTCTTCCATGGAGATCGGATTGACTTGAA
A
Found at i:7268843 original size:3 final size:3
Alignment explanation
Indices: 7268835--7268859 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7268825 CCATGATTTC
7268835 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
7268860 TAATGTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:7281802 original size:13 final size:13
Alignment explanation
Indices: 7281786--7281850 Score: 87
Period size: 13 Copynumber: 5.0 Consensus size: 13
7281776 GTCATAATTC
7281786 TATGACGCGCATT
1 TATGACGCGCATT
*
7281799 TATGACAG-GCACT
1 TATGAC-GCGCATT
*
7281812 TATGACACGCATT
1 TATGACGCGCATT
7281825 TATGACGCGCATT
1 TATGACGCGCATT
*
7281838 TATGACACGCATT
1 TATGACGCGCATT
7281851 AAACGTCATT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
13 44 0.98
14 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (13 bp):
TATGACGCGCATT
Found at i:7281815 original size:26 final size:26
Alignment explanation
Indices: 7281786--7281850 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
7281776 GTCATAATTC
*
7281786 TATGACGCGCATTTATGACAG-GCACT
1 TATGACACGCATTTATGAC-GCGCACT
*
7281812 TATGACACGCATTTATGACGCGCATT
1 TATGACACGCATTTATGACGCGCACT
7281838 TATGACACGCATT
1 TATGACACGCATT
7281851 AAACGTCATT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 1 0.03
26 35 0.97
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TATGACACGCATTTATGACGCGCACT
Found at i:7293375 original size:19 final size:19
Alignment explanation
Indices: 7293325--7293367 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
7293315 ATTTAGAGAA
*
7293325 AAGTTATTAGTTGCATTCC
1 AAGTTATTAGCTGCATTCC
7293344 AAGTTATTAGCTGCATTCC
1 AAGTTATTAGCTGCATTCC
7293363 AAGTT
1 AAGTT
7293368 CATAGCTGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (19 bp):
AAGTTATTAGCTGCATTCC
Found at i:7298600 original size:9 final size:10
Alignment explanation
Indices: 7298569--7298602 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
7298559 GGTTTTGTGT
7298569 GCAAGAACAA
1 GCAAGAACAA
7298579 GC-AGAACAA
1 GCAAGAACAA
7298588 GCAAG-ACAA
1 GCAAGAACAA
7298597 GCAAGA
1 GCAAGA
7298603 TTGCTTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.56, C:0.21, G:0.24, T:0.00
Consensus pattern (10 bp):
GCAAGAACAA
Found at i:7300305 original size:44 final size:44
Alignment explanation
Indices: 7300255--7300385 Score: 165
Period size: 44 Copynumber: 3.0 Consensus size: 44
7300245 ATACCATGAT
*
7300255 CGGTATCGATACTACTTTACATAGTAGTATTGATACTCACTGGA
1 CGGTATCGATACTACTTTACATAGTAGTATTGATACTCCCTGGA
* * *
7300299 CGGTATCGATATTACTTTATATAGTAGTATCGATACTCCCTGGA
1 CGGTATCGATACTACTTTACATAGTAGTATTGATACTCCCTGGA
* * ** *
7300343 TGATATCGATACTACACTACAAAGTAGTA-TGAATACTCCCTGG
1 CGGTATCGATACTACTTTACATAGTAGTATTG-ATACTCCCTGG
7300386 CTAGTATTGA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
43 1 0.01
44 73 0.99
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (44 bp):
CGGTATCGATACTACTTTACATAGTAGTATTGATACTCCCTGGA
Found at i:7303671 original size:18 final size:18
Alignment explanation
Indices: 7303648--7303682 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
7303638 GAATTTTAGG
7303648 ATTTTATATTCGATTCAA
1 ATTTTATATTCGATTCAA
7303666 ATTTTATATTCGATTCA
1 ATTTTATATTCGATTCA
7303683 CTTATTCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (18 bp):
ATTTTATATTCGATTCAA
Found at i:7304789 original size:37 final size:37
Alignment explanation
Indices: 7304748--7304822 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
7304738 CAAAACTTCC
7304748 ACTAAAATTTTAATTACAAATTCACCCCCTCTTGGCT
1 ACTAAAATTTTAATTACAAATTCACCCCCTCTTGGCT
7304785 ACTAAAATTTTAATTACAAATTCACCCCCTCTTGGCT
1 ACTAAAATTTTAATTACAAATTCACCCCCTCTTGGCT
7304822 A
1 A
7304823 ATTCATCCGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (37 bp):
ACTAAAATTTTAATTACAAATTCACCCCCTCTTGGCT
Found at i:7309993 original size:21 final size:21
Alignment explanation
Indices: 7309950--7310009 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
7309940 CATAGTATCA
*
7309950 ATATTGTTTCAATAGGTATTG
1 ATATTGTTTCAATAGGTACTG
*
7309971 ATATTGTTCTTAATA-GTACTG
1 ATATTGTT-TCAATAGGTACTG
* *
7309992 ATACTGCTTCAATAGGTA
1 ATATTGTTTCAATAGGTA
7310010 TCGATACCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 5 0.16
21 22 0.69
22 5 0.16
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.43
Consensus pattern (21 bp):
ATATTGTTTCAATAGGTACTG
Found at i:7310016 original size:21 final size:21
Alignment explanation
Indices: 7309921--7310016 Score: 58
Period size: 21 Copynumber: 4.6 Consensus size: 21
7309911 CTACTCTTGC
* *
7309921 TAGGTATCGATACTACTAGC-A
1 TAGGTATCGATACTGCT-TCAA
* * *
7309942 TA-GTATCAATATTGTTTCAA
1 TAGGTATCGATACTGCTTCAA
* *
7309962 TAGGTATTGATATTG-TTCTTAA
1 TAGGTATCGATACTGCTTC--AA
7309984 TA-GTA-CTGATACTGCTTCAA
1 TAGGTATC-GATACTGCTTCAA
7310004 TAGGTATCGATAC
1 TAGGTATCGATAC
7310017 CCTGGTATCT
Statistics
Matches: 58, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
19 1 0.02
20 20 0.34
21 29 0.50
22 8 0.14
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (21 bp):
TAGGTATCGATACTGCTTCAA
Found at i:7311970 original size:16 final size:16
Alignment explanation
Indices: 7311916--7311971 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
7311906 TGTTTAAATA
7311916 TTTTGATGGATTTATGTG
1 TTTTGAT-G-TTTATGTG
* *
7311934 TTTTGGAT-ATTAGGTTG
1 TTTT-GATGTTTATG-TG
7311951 TTTTGATGTTTATGTG
1 TTTTGATGTTTATGTG
7311967 TTTTG
1 TTTTG
7311972 GACGTTTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
16 14 0.45
17 10 0.32
18 4 0.13
19 3 0.10
ACGTcount: A:0.14, C:0.00, G:0.27, T:0.59
Consensus pattern (16 bp):
TTTTGATGTTTATGTG
Found at i:7312415 original size:18 final size:18
Alignment explanation
Indices: 7312392--7312427 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7312382 GAATTTTAAG
7312392 ATTTTATATTCGATTCAA
1 ATTTTATATTCGATTCAA
7312410 ATTTTATATTCGATTCAA
1 ATTTTATATTCGATTCAA
7312428 TTATTCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.06, T:0.50
Consensus pattern (18 bp):
ATTTTATATTCGATTCAA
Found at i:7312802 original size:24 final size:24
Alignment explanation
Indices: 7312775--7312853 Score: 76
Period size: 24 Copynumber: 3.5 Consensus size: 24
7312765 ACCATGATCG
*
7312775 GTATCGATACTACTTTACATAGTA
1 GTATCGATACTACATTACATAGTA
* **
7312799 GTATCGATACT-CCTTGGAT-G--
1 GTATCGATACTACATTACATAGTA
* *
7312819 GTATCGATACTACACTACAAAGTA
1 GTATCGATACTACATTACATAGTA
7312843 GTATCGATACT
1 GTATCGATACT
7312854 CCCTGACCAG
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
20 11 0.26
21 3 0.07
22 2 0.05
23 5 0.12
24 22 0.51
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (24 bp):
GTATCGATACTACATTACATAGTA
Found at i:7312867 original size:44 final size:44
Alignment explanation
Indices: 7312775--7312872 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
7312765 ACCATGATCG
** * * **
7312775 GTATCGATACTACTTTACATAGTAGTATCGATACTCCTTGGATG
1 GTATCGATACTACACTACAAAGTAGTATCGATACTCCCTGGACA
7312819 GTATCGATACTACACTACAAAGTAGTATCGATACTCCCT-GACCA
1 GTATCGATACTACACTACAAAGTAGTATCGATACTCCCTGGA-CA
7312863 GTATCGATAC
1 GTATCGATAC
7312873 CGTTGGATTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 2 0.04
44 45 0.96
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (44 bp):
GTATCGATACTACACTACAAAGTAGTATCGATACTCCCTGGACA
Found at i:7313430 original size:16 final size:16
Alignment explanation
Indices: 7313409--7313440 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7313399 AGTGTGTATA
7313409 GCTAAGGTAGTGGATG
1 GCTAAGGTAGTGGATG
7313425 GCTAAGGTAGTGGATG
1 GCTAAGGTAGTGGATG
7313441 TAGACTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.44, T:0.25
Consensus pattern (16 bp):
GCTAAGGTAGTGGATG
Found at i:7317450 original size:28 final size:28
Alignment explanation
Indices: 7317389--7317460 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
7317379 TTTAAAATAG
*
7317389 TTTTTGGTCAAAAT-GGTATCTAAACTTA
1 TTTTTTGTCAAAATAGGTATCTAAAC-TA
* *
7317417 TCTTTTGTCAAAATATGTATCTAAAAC-A
1 TTTTTTGTCAAAATAGGTATCT-AAACTA
*
7317445 TTTTTTGGTTAAAATA
1 TTTTTT-GTCAAAATA
7317461 AGTAGAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 18 0.50
29 14 0.39
30 4 0.11
ACGTcount: A:0.35, C:0.10, G:0.11, T:0.44
Consensus pattern (28 bp):
TTTTTTGTCAAAATAGGTATCTAAACTA
Found at i:7322256 original size:37 final size:37
Alignment explanation
Indices: 7322186--7322256 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
7322176 ATTTAAACAT
* *
7322186 ATAAAATTAAAATATAAATAAATAATGAGTAAAATAA
1 ATAAAATTAAAATATAAATAAAAAATGAATAAAATAA
7322223 ATAAAATTAAAACTA-AATATAAAAAAT-AATAAAA
1 ATAAAATTAAAA-TATAA-ATAAAAAATGAATAAAA
7322257 ACTTACAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 20 0.67
38 10 0.33
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.25
Consensus pattern (37 bp):
ATAAAATTAAAATATAAATAAAAAATGAATAAAATAA
Found at i:7323562 original size:22 final size:22
Alignment explanation
Indices: 7323534--7323579 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7323524 TAATAATAAA
7323534 TAATAATAATAATATATTA-TAT
1 TAATAATAATAATA-ATTATTAT
* *
7323556 TAATAATGATTATAATTATTAT
1 TAATAATAATAATAATTATTAT
7323578 TA
1 TA
7323580 TGAACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATAATAATAATAATTATTAT
Found at i:7323573 original size:16 final size:17
Alignment explanation
Indices: 7323518--7323573 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 17
7323508 TAATATTATA
* *
7323518 TATATTTAATAATAAAT
1 TATAATTAATAATAGAT
* *
7323535 AATAA-TAATAATATAT
1 TATAATTAATAATAGAT
7323551 TAT-ATTAATAAT-GAT
1 TATAATTAATAATAGAT
7323566 TATAATTA
1 TATAATTA
7323574 TTATTATGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 6 0.19
16 23 0.72
17 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TATAATTAATAATAGAT
Found at i:7324639 original size:44 final size:44
Alignment explanation
Indices: 7324573--7324657 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
7324563 GATACCCTTT
* * * * *
7324573 AAGGAGTAGCGATACTAGTATGTATAGTAGTACCGATATCGTCC
1 AAGGAGTAGCAATAATACTATGTACAGCAGTACCGATATCGTCC
* *
7324617 AAGGAGTATCAATAATACTATGTACAGCAGTATCGATATCG
1 AAGGAGTAGCAATAATACTATGTACAGCAGTACCGATATCG
7324658 AACATGGTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (44 bp):
AAGGAGTAGCAATAATACTATGTACAGCAGTACCGATATCGTCC
Found at i:7326249 original size:16 final size:17
Alignment explanation
Indices: 7326213--7326249 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7326203 GAGAGTACAA
*
7326213 AATCACTCTCATTATCT
1 AATCCCTCTCATTATCT
7326230 -ATCCCTCT-ATTATCT
1 AATCCCTCTCATTATCT
7326245 AATCC
1 AATCC
7326250 AAATGCTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.27, C:0.32, G:0.00, T:0.41
Consensus pattern (17 bp):
AATCCCTCTCATTATCT
Found at i:7326886 original size:2 final size:2
Alignment explanation
Indices: 7326879--7326910 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7326869 ATGAAAAATA
7326879 AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7326911 ATCAAAACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7328600 original size:20 final size:20
Alignment explanation
Indices: 7328575--7328616 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7328565 AAACCATTCA
7328575 GGGGGAATCGGTTCCCCCTG
1 GGGGGAATCGGTTCCCCCTG
* *
7328595 GGGGGAATTGGTTCCCTCTG
1 GGGGGAATCGGTTCCCCCTG
7328615 GG
1 GG
7328617 CAATCTACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.24, G:0.43, T:0.24
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCCCTG
Found at i:7330100 original size:15 final size:15
Alignment explanation
Indices: 7330076--7330113 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
7330066 AGTTTGTTTT
*
7330076 TCATTTTCTAAGGCG
1 TCATTATCTAAGGCG
7330091 TCATTATCTAAGGCG
1 TCATTATCTAAGGCG
7330106 TCATTATC
1 TCATTATC
7330114 GAATTCCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (15 bp):
TCATTATCTAAGGCG
Found at i:7331198 original size:22 final size:23
Alignment explanation
Indices: 7331151--7331217 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
7331141 GATTCCCTCC
**
7331151 AGGGGGAATCGGTTCCTATTCAA
1 AGGGGGAATCGGTTCCCCTTCAA
7331174 AGGGGGAATCGGTTCCCCTTC-A
1 AGGGGGAATCGGTTCCCCTTCAA
* *
7331196 AGGGGGTATCGATTCCTCCTTC
1 AGGGGGAATCGGTTCC-CCTTC
7331218 CAGAAAAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.38
23 24 0.62
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (23 bp):
AGGGGGAATCGGTTCCCCTTCAA
Found at i:7331216 original size:23 final size:22
Alignment explanation
Indices: 7331132--7331217 Score: 77
Period size: 23 Copynumber: 3.9 Consensus size: 22
7331122 AGAACTCGAG
* *
7331132 GGGGGTATCGATT-CCC-TCCA
1 GGGGGAATCGATTCCCCTTCAA
* **
7331152 GGGGGAATCGGTTCCTATTCAAA
1 GGGGGAATCGATTCCCCTTC-AA
*
7331175 GGGGGAATCGGTTCCCCTTCAA
1 GGGGGAATCGATTCCCCTTCAA
*
7331197 GGGGGTATCGATTCCTCCTTC
1 GGGGGAATCGATTCC-CCTTC
7331218 CAGAAAAATA
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
20 11 0.21
21 1 0.02
22 17 0.32
23 24 0.45
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.27
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTTCAA
Found at i:7337039 original size:19 final size:20
Alignment explanation
Indices: 7337015--7337054 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
7337005 AACCATTCAT
7337015 GGGGAATCGGTTCCC-CTGG
1 GGGGAATCGGTTCCCTCTGG
7337034 GGGGAATCGGTTCCCTCTGG
1 GGGGAATCGGTTCCCTCTGG
7337054 G
1 G
7337055 CAATCTACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.10, C:0.25, G:0.42, T:0.23
Consensus pattern (20 bp):
GGGGAATCGGTTCCCTCTGG
Found at i:7337059 original size:18 final size:17
Alignment explanation
Indices: 7337014--7337059 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
7337004 AAACCATTCA
7337014 TGGGGAATCGGTTCCCC
1 TGGGGAATCGGTTCCCC
7337031 TGGGGGGAATCGGTTCCCTC
1 T--GGGGAATCGGTTCCC-C
*
7337051 TGGGCAATC
1 TGGGGAATC
7337060 TACCCATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 1 0.04
18 7 0.28
19 15 0.60
20 2 0.08
ACGTcount: A:0.13, C:0.26, G:0.37, T:0.24
Consensus pattern (17 bp):
TGGGGAATCGGTTCCCC
Found at i:7342777 original size:24 final size:22
Alignment explanation
Indices: 7342725--7342824 Score: 59
Period size: 24 Copynumber: 4.5 Consensus size: 22
7342715 CAACCCAACG
7342725 GTATCGATACC-CTT-TAAGGA
1 GTATCGATACCACTTGTAAGGA
* *
7342745 GTATAGATACCACTATGTATAGTA
1 GTATCGATACCACT-TGTA-AGGA
7342769 GTATCGAT---A-TTGTCCAAGGA
1 GTATCGATACCACTTGT--AAGGA
* *
7342789 GTATCGATACTACTATGTATAGTA
1 GTATCGATACCACT-TGTA-AGGA
*
7342813 GCATCGATACCA
1 GTATCGATACCA
7342825 AATATGGTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
19 3 0.05
20 22 0.36
21 4 0.07
22 1 0.02
23 4 0.07
24 24 0.39
25 3 0.05
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (22 bp):
GTATCGATACCACTTGTAAGGA
Found at i:7342955 original size:20 final size:23
Alignment explanation
Indices: 7342905--7342960 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
7342895 CCGTGTTTAT
7342905 GGTATCGATACTACTATAAGGCA
1 GGTATCGATACTACTATAAGGCA
*
7342928 TGGTATCGATACTACTGT-A-GCA
1 -GGTATCGATACTACTATAAGGCA
7342950 -GTATCGATACT
1 GGTATCGATACT
7342961 TCTTCTTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 11 0.35
22 3 0.10
23 1 0.03
24 16 0.52
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (23 bp):
GGTATCGATACTACTATAAGGCA
Found at i:7346652 original size:98 final size:98
Alignment explanation
Indices: 7346483--7346678 Score: 392
Period size: 98 Copynumber: 2.0 Consensus size: 98
7346473 ATGGACTTAC
7346483 ACTAATGTCATACATGCAAAAAGTTGTAGTTTATTATGTTCTTCTTTATTGTCGAATTATGTTTT
1 ACTAATGTCATACATGCAAAAAGTTGTAGTTTATTATGTTCTTCTTTATTGTCGAATTATGTTTT
7346548 TATTGACTGCTAATGCATTTTTGTATTGTTTTG
66 TATTGACTGCTAATGCATTTTTGTATTGTTTTG
7346581 ACTAATGTCATACATGCAAAAAGTTGTAGTTTATTATGTTCTTCTTTATTGTCGAATTATGTTTT
1 ACTAATGTCATACATGCAAAAAGTTGTAGTTTATTATGTTCTTCTTTATTGTCGAATTATGTTTT
7346646 TATTGACTGCTAATGCATTTTTGTATTGTTTTG
66 TATTGACTGCTAATGCATTTTTGTATTGTTTTG
7346679 TAGGGACTTA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.50
Consensus pattern (98 bp):
ACTAATGTCATACATGCAAAAAGTTGTAGTTTATTATGTTCTTCTTTATTGTCGAATTATGTTTT
TATTGACTGCTAATGCATTTTTGTATTGTTTTG
Found at i:7348826 original size:20 final size:20
Alignment explanation
Indices: 7348797--7348839 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7348787 GTTACTAGCA
*
7348797 TATCCAATATACTTGTCATT
1 TATCCAATATACTTGCCATT
*
7348817 TATCCCATATACTTGCCATT
1 TATCCAATATACTTGCCATT
7348837 TAT
1 TAT
7348840 TACCATAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44
Consensus pattern (20 bp):
TATCCAATATACTTGCCATT
Found at i:7348990 original size:44 final size:45
Alignment explanation
Indices: 7348823--7349041 Score: 370
Period size: 45 Copynumber: 4.9 Consensus size: 45
7348813 CATTTATCCC
* * *
7348823 ATATACTTGCCATTTATTACCATAAGATTGTAAGCTTATTTTACCA
1 ATATACTTACCATTTATT-CCATAAGCTCGTAAGCTTATTTTACCA
7348869 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
7348914 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
*
7348959 ATATACTTACTA-TTATTCCATAAGCTCGTAAGCTTATTTTACCA
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
*
7349003 ATATACTTACTA-TTATTCCATAAGCTCGTAAGCTTATTT
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
7349042 ATCAATTTTT
Statistics
Matches: 169, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
44 71 0.42
45 81 0.48
46 17 0.10
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (45 bp):
ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCA
Found at i:7349004 original size:89 final size:90
Alignment explanation
Indices: 7348823--7349041 Score: 370
Period size: 89 Copynumber: 2.4 Consensus size: 90
7348813 CATTTATCCC
* * *
7348823 ATATACTTGCCATTTATTACCATAAGATTGTAAGCTTATTTTACCAATATACTTACCATTTATTC
1 ATATACTTACCATTTATT-CCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTC
7348888 CATAAGCTCGTAAGCTTATTTTACCA
65 CATAAGCTCGTAAGCTTATTTTACCA
*
7348914 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACTA-TTATTCC
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCC
7348978 ATAAGCTCGTAAGCTTATTTTACCA
66 ATAAGCTCGTAAGCTTATTTTACCA
*
7349003 ATATACTTACTA-TTATTCCATAAGCTCGTAAGCTTATTT
1 ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
7349042 ATCAATTTTT
Statistics
Matches: 123, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
88 27 0.22
89 43 0.35
90 36 0.29
91 17 0.14
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (90 bp):
ATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTTATTCC
ATAAGCTCGTAAGCTTATTTTACCA
Found at i:7350152 original size:174 final size:174
Alignment explanation
Indices: 7349862--7350210 Score: 698
Period size: 174 Copynumber: 2.0 Consensus size: 174
7349852 AACCAACTTT
7349862 TCCAATTTACACAAAATGGTTCTTCACCATTTTATCACTTAGATTTTTAATACCAATAATTCCAT
1 TCCAATTTACACAAAATGGTTCTTCACCATTTTATCACTTAGATTTTTAATACCAATAATTCCAT
7349927 CATTGAAATTATTACCATTCAAATGCTTTTACAAGAGCATAATTACATTTAAGTGCCCCAACTAT
66 CATTGAAATTATTACCATTCAAATGCTTTTACAAGAGCATAATTACATTTAAGTGCCCCAACTAT
7349992 ACAAATGTTGTACTTAAATCAAAAACTTTTTAAAACTTCCAAAA
131 ACAAATGTTGTACTTAAATCAAAAACTTTTTAAAACTTCCAAAA
7350036 TCCAATTTACACAAAATGGTTCTTCACCATTTTATCACTTAGATTTTTAATACCAATAATTCCAT
1 TCCAATTTACACAAAATGGTTCTTCACCATTTTATCACTTAGATTTTTAATACCAATAATTCCAT
7350101 CATTGAAATTATTACCATTCAAATGCTTTTACAAGAGCATAATTACATTTAAGTGCCCCAACTAT
66 CATTGAAATTATTACCATTCAAATGCTTTTACAAGAGCATAATTACATTTAAGTGCCCCAACTAT
7350166 ACAAATGTTGTACTTAAATCAAAAACTTTTTAAAACTTCCAAAA
131 ACAAATGTTGTACTTAAATCAAAAACTTTTTAAAACTTCCAAAA
7350210 T
1 T
7350211 AGTCATTTTT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
174 175 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.36
Consensus pattern (174 bp):
TCCAATTTACACAAAATGGTTCTTCACCATTTTATCACTTAGATTTTTAATACCAATAATTCCAT
CATTGAAATTATTACCATTCAAATGCTTTTACAAGAGCATAATTACATTTAAGTGCCCCAACTAT
ACAAATGTTGTACTTAAATCAAAAACTTTTTAAAACTTCCAAAA
Found at i:7356075 original size:21 final size:20
Alignment explanation
Indices: 7356049--7356109 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
7356039 AACAGTCAGG
7356049 GGGTATCGATACCAACAGGGT
1 GGGTATCGATACCAA-AGGGT
* *
7356070 GGGTATTGATACCAAAGGTT
1 GGGTATCGATACCAAAGGGT
** *
7356090 TAGTATCGATACTAAAGGGT
1 GGGTATCGATACCAAAGGGT
7356110 CAATATTGGT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (20 bp):
GGGTATCGATACCAAAGGGT
Done.