Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 62
Found at i:7356471 original size:23 final size:23
Alignment explanation
Indices: 7356441--7356492 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
7356431 GCAACTTCAG
7356441 ATCTCATCTTAGATACCGAGGGT
1 ATCTCATCTTAGATACCGAGGGT
*
7356464 ATCTCATCTTAGATACTGAGGGT
1 ATCTCATCTTAGATACCGAGGGT
7356487 ATCTCA
1 ATCTCA
7356493 AAAAGGCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (23 bp):
ATCTCATCTTAGATACCGAGGGT
Found at i:7358139 original size:21 final size:21
Alignment explanation
Indices: 7358105--7358160 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
7358095 AACCACATCG
* *
7358105 AAGAAGTCAGCCACTTCGACT
1 AAGAAGTCAACCACTTCCACT
*
7358126 AAGAAATCAACCACTTCCACT
1 AAGAAGTCAACCACTTCCACT
*
7358147 AAGAAGTTAACCAC
1 AAGAAGTCAACCAC
7358161 ATTGAAGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (21 bp):
AAGAAGTCAACCACTTCCACT
Found at i:7358440 original size:24 final size:24
Alignment explanation
Indices: 7358391--7358454 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 24
7358381 AGTTAATTAT
* *
7358391 TTGTCTGAAATTATG-GAATTACC
1 TTGTCTGAAATTGTGAAAATTACC
*
7358414 TTGTCTGAAATTGTGAAAATTAGC
1 TTGTCTGAAATTGTGAAAATTACC
7358438 TTGT-TGAAATCTGTGAA
1 TTGTCTGAAAT-TGTGAA
7358455 CATATCTGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (24 bp):
TTGTCTGAAATTGTGAAAATTACC
Found at i:7362047 original size:13 final size:13
Alignment explanation
Indices: 7362031--7362055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7362021 TTTGAAAATT
7362031 TTCAAATTTTCCC
1 TTCAAATTTTCCC
7362044 TTCAAATTTTCC
1 TTCAAATTTTCC
7362056 AAAAATTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (13 bp):
TTCAAATTTTCCC
Found at i:7362433 original size:29 final size:29
Alignment explanation
Indices: 7362346--7362433 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
7362336 CAAAATATAT
7362346 AACTTTTAAAA-TTACATTTTAGGTTC-CTA
1 AACTTTTAAAATTTACATTTT-GG-TCACTA
* * * * * *
7362375 AACTTTTCTAATTTTATACTTTAGCCACTA
1 AACTTTT-AAAATTTACATTTTGGTCACTA
7362405 AACTTTTAAAATTTACATTTTGGTCACTA
1 AACTTTTAAAATTTACATTTTGGTCACTA
7362434 TCCAAAATTT
Statistics
Matches: 44, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
29 24 0.55
30 13 0.30
31 7 0.16
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (29 bp):
AACTTTTAAAATTTACATTTTGGTCACTA
Found at i:7365722 original size:5 final size:5
Alignment explanation
Indices: 7365712--7365741 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
7365702 ATGGGCTTCC
7365712 ATATT ATATT ATATT ATATT ATATT CATAT
1 ATATT ATATT ATATT ATATT ATATT -ATAT
7365742 AATAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:7368195 original size:28 final size:28
Alignment explanation
Indices: 7368177--7368252 Score: 134
Period size: 28 Copynumber: 2.7 Consensus size: 28
7368167 ACCTCAATGG
*
7368177 TTAAGCATTAACCTATAAACCTAAATTC
1 TTAAACATTAACCTATAAACCTAAATTC
7368205 TTAAACATTAACCTATAAACCTAAATTC
1 TTAAACATTAACCTATAAACCTAAATTC
*
7368233 TTAAACATTAACCCATAAAC
1 TTAAACATTAACCTATAAAC
7368253 ACCCATACAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.30
Consensus pattern (28 bp):
TTAAACATTAACCTATAAACCTAAATTC
Found at i:7371608 original size:67 final size:67
Alignment explanation
Indices: 7371500--7371635 Score: 218
Period size: 67 Copynumber: 2.0 Consensus size: 67
7371490 AACTGGCATA
* *
7371500 ATTGGTATATTTCTACAAATTGCACAGTTAGGCAATTATTCTTTTACTCAACGGTATTTAACCGT
1 ATTGGTACATTTCTACAAATTGCACAGTTAGGCAATTATTCTTTTACTCAACGGTATTTAACCAT
7371565 TC
66 TC
* * * *
7371567 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAATGGTATTTAACCAT
1 ATTGGTACATTTCTACAAATTGCACAGTTAGGCAATTATTCTTTTACTCAACGGTATTTAACCAT
7371632 TC
66 TC
7371634 AT
1 AT
7371636 CTAACTGGCA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.40
Consensus pattern (67 bp):
ATTGGTACATTTCTACAAATTGCACAGTTAGGCAATTATTCTTTTACTCAACGGTATTTAACCAT
TC
Found at i:7371704 original size:81 final size:81
Alignment explanation
Indices: 7371567--7371924 Score: 590
Period size: 81 Copynumber: 4.4 Consensus size: 81
7371557 TTAACCGTTC
*
7371567 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAATGGTATTTAACCAT
1 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAACGGTATTTAACCAT
7371632 TCATCTAACTGGCATA
66 TCATCTAACTGGCATA
*
7371648 ATTGGTACCTTTCTACCAATTGCACAGTTACGCCATTATTCTTTTACTCAACGGTATTTAACCAT
1 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAACGGTATTTAACCAT
* *
7371713 GCATCAAACTGGCATA
66 TCATCTAACTGGCATA
* * * *
7371729 ATCGGTACCTTTCTACAAATTGCACAGTTAGGCCATTTTTCTTTTGCTCAACGGTATTTAACCAT
1 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAACGGTATTTAACCAT
*
7371794 TCATCTAACTAGCATA
66 TCATCTAACTGGCATA
* * **
7371810 ATTGGTACCTTTCTACCAATTGCACTGTTAGGCCATTATTCTTTTACTCAACAGTATTTAACTGT
1 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAACGGTATTTAACCAT
*
7371875 TCATCTAATTGGCATA
66 TCATCTAACTGGCATA
7371891 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCC
1 ATTGGTACCTTTCTACCAATTGCACAGTTAGGCC
7371925 TCAAAGGCAC
Statistics
Matches: 254, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 254 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (81 bp):
ATTGGTACCTTTCTACCAATTGCACAGTTAGGCCATTATTCTTTTACTCAACGGTATTTAACCAT
TCATCTAACTGGCATA
Found at i:7371957 original size:68 final size:68
Alignment explanation
Indices: 7371874--7372061 Score: 250
Period size: 68 Copynumber: 2.8 Consensus size: 68
7371864 TATTTAACTG
* * ** **
7371874 TTCATCTAATTGGCATAATTGGTACCTTTCTACCAATTGCACAGTTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAAATGACACCTTTCTACCAAAAGCACAGTTAGGCCTCAAAGGCACTTAG
7371939 CCT
66 CCT
* **
7371942 TTCATTTAACTGGCATAAATGACACCTTTCTGTCAAAAGCACAGTTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAAATGACACCTTTCTACCAAAAGCACAGTTAGGCCTCAAAGGCACTTAG
7372007 CCT
66 CCT
* ** * *
7372010 TTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCATAGTTAGGCCT
1 TTCATCTAACTGGCATAAATGACACCTTTCTACCAAAAGCACAGTTAGGCCT
7372062 ATTAATCTTT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 107 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (68 bp):
TTCATCTAACTGGCATAAATGACACCTTTCTACCAAAAGCACAGTTAGGCCTCAAAGGCACTTAG
CCT
Found at i:7372353 original size:31 final size:31
Alignment explanation
Indices: 7372318--7372412 Score: 72
Period size: 31 Copynumber: 3.2 Consensus size: 31
7372308 CGGAAATTCA
7372318 TACACTTAGTATGAATTTCTTAATATTTTAG
1 TACACTTAGTATGAATTTCTTAATATTTTAG
** ** * ** *
7372349 TACACAAAGTACCCAA-TACGGAA-A-TTCA-
1 TACACTTAGTA-TGAATTTCTTAATATTTTAG
7372377 TACACTTAGTATGAATTTCTTAATATTTTAG
1 TACACTTAGTATGAATTTCTTAATATTTTAG
*
7372408 CACAC
1 TACAC
7372413 AAAGTGCCCA
Statistics
Matches: 42, Mismatches: 17, Indels: 10
0.61 0.25 0.14
Matches are distributed among these distances:
27 2 0.05
28 13 0.31
29 4 0.10
30 4 0.10
31 17 0.40
32 2 0.05
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (31 bp):
TACACTTAGTATGAATTTCTTAATATTTTAG
Found at i:7372372 original size:59 final size:59
Alignment explanation
Indices: 7372290--7372470 Score: 303
Period size: 59 Copynumber: 3.1 Consensus size: 59
7372280 TTCTTATTTC
*
7372290 GCACACATAGTGCCC-ATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
1 GCACACAAAGTGCCCAATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
* *
7372348 GTACACAAAGTACCCAATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
1 GCACACAAAGTGCCCAATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
* *
7372407 GCACACAAAGTGCCCAATACGAAAATTCATACACTTAGTATGAATTTCTTAACATTTT-
1 GCACACAAAGTGCCCAATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
7372465 GCACAC
1 GCACAC
7372471 TTAGTGCCAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
58 18 0.16
59 97 0.84
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (59 bp):
GCACACAAAGTGCCCAATACGGAAATTCATACACTTAGTATGAATTTCTTAATATTTTA
Found at i:7372959 original size:95 final size:96
Alignment explanation
Indices: 7372831--7373036 Score: 265
Period size: 95 Copynumber: 2.2 Consensus size: 96
7372821 CAATGCTTCT
* ** * *
7372831 ATACTATGGTATCGATACCCCCTTCTGGCATCGATACTGATTTTAGGTTCGATG-TTGCCTAGTA
1 ATACTACGGTATCGATACCCCCTTCTGGCATCGATACCAATTTTAGATTCAATGTTTGCCTAGTA
*
7372895 TCAATACTCTTACCATGGTATCGATACTACC
66 TCAATACCCTTACCATGGTATCGATACTACC
* *** *
7372926 ATACTACGGTATCGATACCCCCTTCTGGTATCGATACCAATTTTAGATTCAATGTTTTTTTGGTA
1 ATACTACGGTATCGATACCCCCTTCTGGCATCGATACCAATTTTAGATTCAATGTTTGCCTAGTA
* *
7372991 TCGATACCCTTACTATGGTATCGATACTACC
66 TCAATACCCTTACCATGGTATCGATACTACC
*
7373022 -TAGT-CGGTATCGATA
1 ATACTACGGTATCGATA
7373037 TTGATTGAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
94 11 0.11
95 51 0.53
96 34 0.35
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (96 bp):
ATACTACGGTATCGATACCCCCTTCTGGCATCGATACCAATTTTAGATTCAATGTTTGCCTAGTA
TCAATACCCTTACCATGGTATCGATACTACC
Found at i:7375048 original size:59 final size:59
Alignment explanation
Indices: 7374943--7375120 Score: 162
Period size: 60 Copynumber: 3.0 Consensus size: 59
7374933 TAGTATATAC
* * * * *
7374943 TAATAGTTTAGGATGAAATTGAAATGTTCAAAATTTTGAA-AACTAATTTAGAATG-AGA
1 TAATAGTTTAGGATGAAATTAAAATATTAAAAAGTTT-AAGAACTAATTTAGAATGAAAA
** * * * *
7375001 TTGTAGTTTAGGGATGGAATTCAAATATTAAAAAGTTTAAGACCTAATTTAGGATGAAAA
1 TAATAGTTTA-GGATGAAATTAAAATATTAAAAAGTTTAAGAACTAATTTAGAATGAAAA
* * * * * *
7375061 TAATAATTTAAAGATAAAATTAAAATATTTAAAAGTTTAAGAACTAATTTAAAATAAAAA
1 TAATAGTTT-AGGATGAAATTAAAATATTAAAAAGTTTAAGAACTAATTTAGAATGAAAA
7375121 ATTATAATTT
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
58 10 0.11
59 35 0.37
60 48 0.51
61 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.14, T:0.34
Consensus pattern (59 bp):
TAATAGTTTAGGATGAAATTAAAATATTAAAAAGTTTAAGAACTAATTTAGAATGAAAA
Found at i:7375353 original size:20 final size:19
Alignment explanation
Indices: 7375319--7375376 Score: 82
Period size: 20 Copynumber: 3.1 Consensus size: 19
7375309 TATAATTTTC
*
7375319 ATTTTATAGTTATTTAATA
1 ATTTTATAATTATTTAATA
7375338 ATTTTAATAATTATTTAATA
1 ATTTT-ATAATTATTTAATA
*
7375358 ATTTT-TAAATATTTAATA
1 ATTTTATAATTATTTAATA
7375376 A
1 A
7375377 CTAAAATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 13 0.36
19 5 0.14
20 18 0.50
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTTTATAATTATTTAATA
Found at i:7375356 original size:11 final size:11
Alignment explanation
Indices: 7375328--7375376 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 11
7375318 CATTTTATAG
7375328 TTATTTAATAA
1 TTATTTAATAA
7375339 -T-TTTAATAA
1 TTATTTAATAA
7375348 TTATTTAATAA
1 TTATTTAATAA
7375359 TT-TTT-A-AA
1 TTATTTAATAA
7375367 -TATTTAATAA
1 TTATTTAATAA
7375377 CTAAAATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
7 1 0.03
8 5 0.15
9 10 0.30
10 7 0.21
11 10 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TTATTTAATAA
Found at i:7377704 original size:22 final size:22
Alignment explanation
Indices: 7377672--7377713 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7377662 TTTTTGGAGG
*
7377672 ATATCTGTGGATGTATAACATT
1 ATATCTGTGGAGGTATAACATT
*
7377694 ATATCTTTGGAGGTATAACA
1 ATATCTGTGGAGGTATAACA
7377714 AATTTTAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (22 bp):
ATATCTGTGGAGGTATAACATT
Found at i:7384160 original size:39 final size:39
Alignment explanation
Indices: 7384114--7384304 Score: 229
Period size: 39 Copynumber: 4.7 Consensus size: 39
7384104 AATGACAACT
*
7384114 GGCCAGATGAGTTCAATGTATCCTCAGCAAATGCCGGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCGGCG
* *
7384153 GGTCAGATGGGTTCAATGTATCCTCAGCAAATGCTGGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCGGCG
* * *
7384192 GGTCAGATGGGTTCAATTTATCCACAGCAAATGCCAGTGGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCC---GGCG
* * * *
7384234 GGCCAGATGGGTTCGATGTATCCACAGCAAATGTCGGTGGCT
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATG-C--CGGCG
*
7384276 GGCCAGATGGGTTCGATGTATCCTCAGCA
1 GGCCAGATGGGTTCAATGTATCCTCAGCA
7384305 GATTTATGGC
Statistics
Matches: 134, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
39 68 0.51
42 65 0.49
43 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (39 bp):
GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCGGCG
Found at i:7384246 original size:42 final size:40
Alignment explanation
Indices: 7384114--7384304 Score: 242
Period size: 42 Copynumber: 4.7 Consensus size: 40
7384104 AATGACAACT
*
7384114 GGCCAGATGAGTTCAATGTATCCTCAGCAAATGCC-GGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCTGGCG
*
7384153 GGTCAGATGGGTTCAATGTATCCTCAGCAAATG-CTGGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCTGGCG
* * *
7384192 GGTCAGATGGGTTCAATTTATCCACAGCAAATGCCAGTGGCG
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCC--TGGCG
* * * *
7384234 GGCCAGATGGGTTCGATGTATCCACAGCAAATGTCGGTGGCT
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATG-C-CTGGCG
*
7384276 GGCCAGATGGGTTCGATGTATCCTCAGCA
1 GGCCAGATGGGTTCAATGTATCCTCAGCA
7384305 GATTTATGGC
Statistics
Matches: 136, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
38 1 0.01
39 66 0.49
40 1 0.01
42 67 0.49
43 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCTGGCG
Found at i:7384263 original size:81 final size:80
Alignment explanation
Indices: 7384114--7384304 Score: 251
Period size: 81 Copynumber: 2.4 Consensus size: 80
7384104 AATGACAACT
* * *
7384114 GGCCAGATGAGTTCAATGTATCCTCAGCAAATGCCGGCGGGTCAGATGGGTTCAATGTATCCTCA
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCGGCGGGCCAGATGGGTTCAATGTATCCACA
7384179 GCAAATG-C-TGGCG
66 GCAAATGTCGTGGCG
* * * *
7384192 GGTCAGATGGGTTCAATTTATCCACAGCAAATGCCAGTGGCGGGCCAGATGGGTTCGATGTATCC
1 GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCC---GGCGGGCCAGATGGGTTCAATGTATCC
*
7384257 ACAGCAAATGTCGGTGGCT
63 ACAGCAAATGTC-GTGGCG
*
7384276 GGCCAGATGGGTTCGATGTATCCTCAGCA
1 GGCCAGATGGGTTCAATGTATCCTCAGCA
7384305 GATTTATGGC
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 31 0.33
81 34 0.36
82 1 0.01
84 29 0.31
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (80 bp):
GGCCAGATGGGTTCAATGTATCCTCAGCAAATGCCGGCGGGCCAGATGGGTTCAATGTATCCACA
GCAAATGTCGTGGCG
Found at i:7393650 original size:30 final size:30
Alignment explanation
Indices: 7393615--7393684 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
7393605 TTTTCTTTTC
7393615 TAAATCATTTATTTTGATTTTTTAAAGTTA
1 TAAATCATTTATTTTGATTTTTTAAAGTTA
*
7393645 TAAATCATTTATTTTGATTTTTTAAAGTTC
1 TAAATCATTTATTTTGATTTTTTAAAGTTA
7393675 TAAATCATTT
1 TAAATCATTT
7393685 TTCAAAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.56
Consensus pattern (30 bp):
TAAATCATTTATTTTGATTTTTTAAAGTTA
Found at i:7395033 original size:20 final size:20
Alignment explanation
Indices: 7395008--7395048 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
7394998 CCGTTAGACT
7395008 GGGGGAATCGGTACCCCCTG
1 GGGGGAATCGGTACCCCCTG
*
7395028 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCGGTACCCCCTG
7395048 G
1 G
7395049 ACAATCTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.29, G:0.39, T:0.17
Consensus pattern (20 bp):
GGGGGAATCGGTACCCCCTG
Found at i:7399944 original size:20 final size:21
Alignment explanation
Indices: 7399898--7399958 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
7399888 TCCCCTGTGG
7399898 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
7399921 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
7399941 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
7399959 TGTACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:7405943 original size:13 final size:13
Alignment explanation
Indices: 7405925--7405949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7405915 AGCCATTAGT
7405925 TTCATAATTAATA
1 TTCATAATTAATA
7405938 TTCATAATTAAT
1 TTCATAATTAAT
7405950 GTGAAATGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTCATAATTAATA
Found at i:7406718 original size:21 final size:21
Alignment explanation
Indices: 7406661--7406718 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
7406651 TGGAGCGTGG
7406661 GGGGAATCGGTACCCTCTCAT
1 GGGGAATCGGTACCCTCTCAT
* * * *
7406682 GGAGAATTGATACCCTTTCAT
1 GGGGAATCGGTACCCTCTCAT
*
7406703 GGGGAATCGGTTCCCT
1 GGGGAATCGGTACCCT
7406719 AAGTGCAATA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (21 bp):
GGGGAATCGGTACCCTCTCAT
Found at i:7406791 original size:20 final size:20
Alignment explanation
Indices: 7406747--7406827 Score: 103
Period size: 20 Copynumber: 4.1 Consensus size: 20
7406737 ACCGTTAGAC
*
7406747 AGGGGGAATCGGTA-CCCCT
1 AGGGGGAATCTGTACCCCCT
* * *
7406766 GGGGGGGAATTTGTTCCCCCT
1 -AGGGGGAATCTGTACCCCCT
7406787 A-GGGGAATCTGTACCCCCT
1 AGGGGGAATCTGTACCCCCT
7406806 AGGGGGAATCTGTACCCCCT
1 AGGGGGAATCTGTACCCCCT
7406826 AG
1 AG
7406828 ACAATCTAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
19 17 0.33
20 30 0.58
21 5 0.10
ACGTcount: A:0.19, C:0.27, G:0.33, T:0.21
Consensus pattern (20 bp):
AGGGGGAATCTGTACCCCCT
Found at i:7406802 original size:39 final size:39
Alignment explanation
Indices: 7406749--7406827 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
7406739 CGTTAGACAG
* * *
7406749 GGGGAATCGGTA-CCCCTGGGGGGGAATTTGTTCCCCCTA
1 GGGGAATCGGTACCCCCT-AGGGGGAATCTGTACCCCCTA
*
7406788 GGGGAATCTGTACCCCCTAGGGGGAATCTGTACCCCCTA
1 GGGGAATCGGTACCCCCTAGGGGGAATCTGTACCCCCTA
7406827 G
1 G
7406828 ACAATCTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 30 0.86
40 5 0.14
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.22
Consensus pattern (39 bp):
GGGGAATCGGTACCCCCTAGGGGGAATCTGTACCCCCTA
Found at i:7418146 original size:12 final size:12
Alignment explanation
Indices: 7418129--7418158 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7418119 TTCTGCCCTC
7418129 AGACCGCACATA
1 AGACCGCACATA
*
7418141 AGACCGTACATA
1 AGACCGCACATA
7418153 AGACCG
1 AGACCG
7418159 ATCGGCCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.30, G:0.20, T:0.10
Consensus pattern (12 bp):
AGACCGCACATA
Found at i:7419030 original size:21 final size:20
Alignment explanation
Indices: 7419004--7419043 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
7418994 GCATCAAGGA
7419004 TTTTGTTGAAGCCATGAAATC
1 TTTTGTTGAAGCCAT-AAATC
*
7419025 TTTTGTTGAGGCCATAAAT
1 TTTTGTTGAAGCCATAAAT
7419044 TCATGCAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (20 bp):
TTTTGTTGAAGCCATAAATC
Found at i:7426632 original size:45 final size:46
Alignment explanation
Indices: 7426546--7426952 Score: 268
Period size: 45 Copynumber: 9.0 Consensus size: 46
7426536 ATTCATACTT
* * *
7426546 ATAATGCACC-ATTTTGCATTTTCA-TTATTGGAATTCTTTCATGCCA
1 ATAATGCACCTATTATGCA-TTTCATTTA-TGGCATCCTTTCATGCCA
* * * *
7426592 ATAATGCACCTA-TATGCATTTCAATTATGGTATCCTTTCATGTCG
1 ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
* * *
7426637 ATAATACACC-A-TATGCATTTTATTTATGGCATCCTTTCATGCCCT
1 ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATG-CCA
* * * * *
7426682 TTTAT--ACGCTATTATACATTTCATTTATGGCATTCTTTCATGCCCTT
1 ATAATGCAC-CTATTATGCATTTCATTTATGGCATCCTTTCATG-CC-A
* * * *
7426729 CTATATG---CTATTATACATTTCATTTATGGCGTCCTTTAATGCCA
1 ATA-ATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
* * *
7426773 ATAATGCACCCA-TATGCATTTTATTTATGGCATCCTTTCATGCCC
1 ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
* * * * ** * *
7426818 TTTAT-AAGCTATTATATATTTCATTTATAGCATCCTTTCATGCCT
1 ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
* * * * * *
7426863 TTTATACA-CTATTATACATTTAATTTATGGCATCCTTTCATGCCT
1 ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
* * * *
7426908 TTCTAT--ACGCTATTATACATTTCATTTATGGCATACTTTCATGCC
1 AT-AATGCAC-CTATTATGCATTTCATTTATGGCATCCTTTCATGCC
7426953 TTTTATACAA
Statistics
Matches: 299, Mismatches: 45, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
43 5 0.02
44 35 0.12
45 135 0.45
46 119 0.40
47 3 0.01
48 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (46 bp):
ATAATGCACCTATTATGCATTTCATTTATGGCATCCTTTCATGCCA
Found at i:7426664 original size:44 final size:43
Alignment explanation
Indices: 7426546--7426679 Score: 142
Period size: 44 Copynumber: 3.0 Consensus size: 43
7426536 ATTCATACTT
* *
7426546 ATAATGCACCATTTTGCATTTTCATTATTGGAATTCTTTCATGCCA
1 ATAATGCACCA-TATGCATTTT-ATTA-TGGAATCCTTTCATGCCA
* * * *
7426592 ATAATGCACCTATATGCATTTCAATTATGGTATCCTTTCATGTCG
1 ATAATGCACC-ATATGCATTT-TATTATGGAATCCTTTCATGCCA
* *
7426637 ATAATACACCATATGCATTTTATTTATGGCATCCTTTCATGCC
1 ATAATGCACCATATGCATTTTA-TTATGGAATCCTTTCATGCC
7426680 CTTTTATACG
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
43 1 0.01
44 28 0.37
45 23 0.31
46 22 0.29
47 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (43 bp):
ATAATGCACCATATGCATTTTATTATGGAATCCTTTCATGCCA
Found at i:7426709 original size:46 final size:45
Alignment explanation
Indices: 7426608--7426960 Score: 388
Period size: 45 Copynumber: 7.8 Consensus size: 45
7426598 CACCTATATG
* * * ** * * * *
7426608 CATTTCAATTATGGTATCCTTTCATGTCGATAATACACCA-TATG
1 CATTTCATTTATGGCATCCTTTCATGCCTTTTATACGCTATTATA
*
7426652 CATTTTATTTATGGCATCCTTTCATGCCCTTTTATACGCTATTATA
1 CATTTCATTTATGGCATCCTTTCATG-CCTTTTATACGCTATTATA
* * *
7426698 CATTTCATTTATGGCATTCTTTCATGCCCTTCTATATGCTATTATA
1 CATTTCATTTATGGCATCCTTTCATG-CCTTTTATACGCTATTATA
* * ** * * *
7426744 CATTTCATTTATGGCGTCCTTTAATGCCAATAATGCAC-CCA-TATG
1 CATTTCATTTATGGCATCCTTTCATGCCTTTTAT--ACGCTATTATA
* * *
7426789 CATTTTATTTATGGCATCCTTTCATGCCCTTTATAAGCTATTATA
1 CATTTCATTTATGGCATCCTTTCATGCCTTTTATACGCTATTATA
* * *
7426834 TATTTCATTTATAGCATCCTTTCATGCCTTTTATACACTATTATA
1 CATTTCATTTATGGCATCCTTTCATGCCTTTTATACGCTATTATA
*
7426879 CATTTAATTTATGGCATCCTTTCATGCCTTTCTATACGCTATTATA
1 CATTTCATTTATGGCATCCTTTCATGCCTTT-TATACGCTATTATA
*
7426925 CATTTCATTTATGGCATACTTTCATGCCTTTTATAC
1 CATTTCATTTATGGCATCCTTTCATGCCTTTTATAC
7426961 AACGTTATAT
Statistics
Matches: 257, Mismatches: 45, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
43 1 0.00
44 25 0.10
45 118 0.46
46 112 0.44
47 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.45
Consensus pattern (45 bp):
CATTTCATTTATGGCATCCTTTCATGCCTTTTATACGCTATTATA
Found at i:7426866 original size:181 final size:181
Alignment explanation
Indices: 7426581--7426939 Score: 515
Period size: 181 Copynumber: 2.0 Consensus size: 181
7426571 TATTGGAATT
* * * * *
7426581 CTTTCATGCCAATAATGCACCTATATGCATTTCAATTATGGTATCCTTTCATGTCGATAATACAC
1 CTTTAATGCCAATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCCATAATACAC
* * * * *
7426646 CATATGCATTTTATTTATGGCATCCTTTCATGCCCTTTTATACGCTATTATACATTTCATTTATG
66 CATATACATTTCATTTATAGCATCCTTTCATGCCCTTTTATACACTATTATACATTTAATTTATG
* *
7426711 GCATTCTTTCATGCCCTTCTATATGCTATTATACATTTCATTTATGGCGTC
131 GCATCCTTTCATGCCCTTCTATACGCTATTATACATTTCATTTATGGCGTC
* * * *
7426762 CTTTAATGCCAATAATGCACCCATATGCATTTTATTTATGGCATCCTTTCATGCCCTTTATA-AG
1 CTTTAATGCCAATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCCATAATACA-
* *
7426826 CTATTATATATTTCATTTATAGCATCCTTTCATG-CCTTTTATACACTATTATACATTTAATTTA
65 CCA-TATACATTTCATTTATAGCATCCTTTCATGCCCTTTTATACACTATTATACATTTAATTTA
*
7426890 TGGCATCCTTTCATGCCTTTCTATACGCTATTATACATTTCATTTATGGC
129 TGGCATCCTTTCATGCCCTTCTATACGCTATTATACATTTCATTTATGGC
7426940 ATACTTTCAT
Statistics
Matches: 157, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
180 1 0.01
181 130 0.83
182 26 0.17
ACGTcount: A:0.25, C:0.22, G:0.09, T:0.44
Consensus pattern (181 bp):
CTTTAATGCCAATAATGCACCCATATGCATTTCAATTATGGCATCCTTTCATGCCCATAATACAC
CATATACATTTCATTTATAGCATCCTTTCATGCCCTTTTATACACTATTATACATTTAATTTATG
GCATCCTTTCATGCCCTTCTATACGCTATTATACATTTCATTTATGGCGTC
Found at i:7427409 original size:54 final size:55
Alignment explanation
Indices: 7427345--7427494 Score: 187
Period size: 55 Copynumber: 2.8 Consensus size: 55
7427335 TATACGGTAG
* * * *
7427345 TTCATCAACTCATGATGAATTCCGTGG-GTTGTACACATCGTTCCTGTACGATTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACACATAGTACCAGTACGATTA
*** * *
7427399 TTCATCAACTCATGATGAATTATATGGATTTGCACACATAGTACCAGTACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACACATAGTACCAGTACGATTA
* *
7427454 TTCATCAACTCATGATGAATTCCGT-GAATTGCACACTTAGT
1 TTCATCAACTCATGATGAATTCCGTGGAGTTGCACACATAGT
7427495 GCCGAAATGG
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 38 0.47
55 43 0.53
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (55 bp):
TTCATCAACTCATGATGAATTCCGTGGAGTTGCACACATAGTACCAGTACGATTA
Found at i:7427510 original size:54 final size:54
Alignment explanation
Indices: 7427447--7427983 Score: 754
Period size: 54 Copynumber: 9.9 Consensus size: 54
7427437 TAGTACCAGT
* * *
7427447 ACGGTTATTCATCAAC-TCATGATGAATTCCGTGAATTGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACAT-AGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
7427501 ATGGTTATTCATCCACATAGGATGAATTCCGTAAAATGCACACTTAGTGTCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
7427555 ACGGTTATTCATCTATATAGGATGAATTCTGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * * *
7427609 ACAGTTATTCATCCACATAAGATGAATTCCGTGAAATGCACACTTAATGTCAAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
7427663 ACGATTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTATTGCC-AA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
7427716 GACGGTTATTCATCCACATATGATGAATTCCGTGAAATGCACACTTAATGTCGAA
1 -ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
7427771 ACGGCTATTTATCCACATAGGATGAATTCCGTGAAATGCACACTTATTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * * ** *
7427825 ATGGATATTCATCCAAATAGGATGAATTTTGTGAAATGCACACTTAGTGTCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
*
7427879 ATGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
7427933 ACGGTTATTTATCCACATAGGATGAATTCCGTGAAATGCATACTTAGTGCC
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCC
7427984 TATTTGGTAA
Statistics
Matches: 428, Mismatches: 52, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
53 2 0.00
54 423 0.99
55 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (54 bp):
ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
Found at i:7433506 original size:16 final size:17
Alignment explanation
Indices: 7433471--7433515 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
7433461 CCTAAATTTG
*
7433471 GTATCGATACTCATTCAA
1 GTATCGATAC-CAGTCAA
7433489 GTATCGATACC-GTCAA
1 GTATCGATACCAGTCAA
*
7433505 GTATTGATACC
1 GTATCGATACC
7433516 CTAGTACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 1 0.04
18 10 0.40
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (17 bp):
GTATCGATACCAGTCAA
Found at i:7433617 original size:20 final size:20
Alignment explanation
Indices: 7433569--7433619 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7433559 CAGATAGGGG
7433569 GTATCGATACCAAGGGTTCA
1 GTATCGATACCAAGGGTTCA
* * *
7433589 TTATTGATACTGAAGGG-TCA
1 GTATCGATAC-CAAGGGTTCA
7433609 GTATCGATACC
1 GTATCGATACC
7433620 CACGAGCAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (20 bp):
GTATCGATACCAAGGGTTCA
Found at i:7436992 original size:15 final size:15
Alignment explanation
Indices: 7436972--7437008 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
7436962 GCATTTTGTT
7436972 CCTTCTTGGTTGAAC
1 CCTTCTTGGTTGAAC
7436987 CCTTCTTGGTTGAAC
1 CCTTCTTGGTTGAAC
7437002 CCTTCTT
1 CCTTCTT
7437009 TTTTAATTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.11, C:0.30, G:0.16, T:0.43
Consensus pattern (15 bp):
CCTTCTTGGTTGAAC
Found at i:7438908 original size:105 final size:105
Alignment explanation
Indices: 7438724--7438916 Score: 244
Period size: 105 Copynumber: 1.8 Consensus size: 105
7438714 ACACTTTCAC
* * * * *
7438724 AGTATCGTTATCAAAATCAACTACTAAAATTTACATTTGCCAAAAACTTAAAAATGAGTATTAGT
1 AGTATCGATACCAAAATCAACTACTAAAATTTACATTTGCCAAAAACTTAAAAATGAATATCAAT
*
7438789 ACTACAACATGAGTATCAATACTGGTATCGATACTGTGCA
66 ACTACAACACGAGTATCAATACTGGTATCGATACTGTGCA
* * * * * *
7438829 AGTATCGATACCAATATCAGCTACTAGAATTTGCATTTGCTAAAAACTTAAAGA-GAATATCAAT
1 AGTATCGATACCAAAATCAACTACTAAAATTTACATTTGCCAAAAACTTAAAAATGAATATCAAT
* *
7438893 ACTACTAATACGAGTATCGATACT
66 ACTAC-AACACGAGTATCAATACT
7438917 ACTGAGTATT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
104 12 0.16
105 61 0.84
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (105 bp):
AGTATCGATACCAAAATCAACTACTAAAATTTACATTTGCCAAAAACTTAAAAATGAATATCAAT
ACTACAACACGAGTATCAATACTGGTATCGATACTGTGCA
Found at i:7450826 original size:21 final size:21
Alignment explanation
Indices: 7450797--7450869 Score: 137
Period size: 21 Copynumber: 3.5 Consensus size: 21
7450787 AAAAATAATC
*
7450797 TTAAATTTTCTTTGAAAAATA
1 TTAATTTTTCTTTGAAAAATA
7450818 TTAATTTTTCTTTGAAAAATA
1 TTAATTTTTCTTTGAAAAATA
7450839 TTAATTTTTCTTTGAAAAATA
1 TTAATTTTTCTTTGAAAAATA
7450860 TTAATTTTTC
1 TTAATTTTTC
7450870 ATACATCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.53
Consensus pattern (21 bp):
TTAATTTTTCTTTGAAAAATA
Found at i:7453035 original size:15 final size:15
Alignment explanation
Indices: 7452996--7453037 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
7452986 AGATTTTATC
7452996 AATAATATTTCATAAA
1 AATAATA-TTCATAAA
7453012 AATATATATTCATAAA
1 AATA-ATATTCATAAA
7453028 CAA-AATATTC
1 -AATAATATTC
7453038 TTACAGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.25
16 13 0.54
17 5 0.21
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATATTCATAAA
Found at i:7465969 original size:23 final size:23
Alignment explanation
Indices: 7465942--7465992 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
7465932 AAATTTGAAA
7465942 TTAATAGGGATTTCAAATAAAAT
1 TTAATAGGGATTTCAAATAAAAT
7465965 TTAATAGGGATTTCAAATAAAAT
1 TTAATAGGGATTTCAAATAAAAT
7465988 TTAAT
1 TTAAT
7465993 CATAAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (23 bp):
TTAATAGGGATTTCAAATAAAAT
Found at i:7466104 original size:32 final size:32
Alignment explanation
Indices: 7466068--7466157 Score: 103
Period size: 32 Copynumber: 2.8 Consensus size: 32
7466058 TTTTAAAAGC
* * *
7466068 TATAAAATTTATCATTGAA-TTTATCAAATTAT
1 TATAAAATAT-TCATTAAATTTTATCAAAGTAT
7466100 TATAAAATATTCATTAAATTTTATCAAAGTAT
1 TATAAAATATTCATTAAATTTTATCAAAGTAT
* *
7466132 TAAAAAATAATT-ATTAAGTTTTATCA
1 TATAAAAT-ATTCATTAAATTTTATCA
7466158 CTGTTACAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
31 7 0.14
32 41 0.80
33 3 0.06
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (32 bp):
TATAAAATATTCATTAAATTTTATCAAAGTAT
Found at i:7467324 original size:130 final size:128
Alignment explanation
Indices: 7467158--7467404 Score: 320
Period size: 130 Copynumber: 1.9 Consensus size: 128
7467148 GAAGAAACTC
* * * * * *
7467158 ACATTATTATTTATTTTCAATTGAAGAAGATACTAA-TTCTCTAGTTTTTATTAAGATAATTATT
1 ACATTATTATTCATTTCCAATTAAAGAAAATACTAATTTC-CTAATTATTATTAAGATAATTATT
* *
7467222 TTTTATTTTTATTTGAAATAATATAATACTATCATTTCTTAAAATTTTA-AAAATCAAGAAAAAT
65 TTTTATTTTTAATTGAAATAATATAAT-CTA--ATTTCCTAAAATTTTAGAAAATCAAGAAAAAT
7467286 GT
127 GT
* *
7467288 ACATTATTATCTCATTTCCAATTAAAGAAAAT-CTAATTTCCTAATTATTATTAGGGTAATTATT
1 ACATTATTAT-TCATTTCCAATTAAAGAAAATACTAATTTCCTAATTATTATTAAGATAATTATT
* *
7467352 TTTTATTTTTAATTGAAATAATATGATGTAATTTCCTAAAATTTTAGAAAATC
65 TTTTATTTTTAATTGAAATAATATAATCTAATTTCCTAAAATTTTAGAAAATC
7467405 GAAATAATTA
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
127 15 0.15
128 6 0.06
129 2 0.02
130 59 0.58
131 20 0.20
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (128 bp):
ACATTATTATTCATTTCCAATTAAAGAAAATACTAATTTCCTAATTATTATTAAGATAATTATTT
TTTATTTTTAATTGAAATAATATAATCTAATTTCCTAAAATTTTAGAAAATCAAGAAAAATGT
Found at i:7468632 original size:19 final size:19
Alignment explanation
Indices: 7468587--7468638 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7468577 ATTTTTTTTC
* * *
7468587 AATAATTGACTAATTTATT
1 AATAATTTAATAATATATT
7468606 AATAATTTAATAATATATT
1 AATAATTTAATAATATATT
7468625 AACT-ATTTAATAAT
1 AA-TAATTTAATAAT
7468639 TTAATAGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 28 0.97
20 1 0.03
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (19 bp):
AATAATTTAATAATATATT
Found at i:7468991 original size:58 final size:57
Alignment explanation
Indices: 7468918--7469063 Score: 177
Period size: 58 Copynumber: 2.5 Consensus size: 57
7468908 TTTAACCTAA
* * * * *
7468918 AAATAAAAAGATATAATTTAAGTAAATAATGAATAGAACCTTAAATAAATAATAACTT
1 AAATAAAAAGATATAATTTAAGTAAACAATAAATAAAAACTTAAACAAATAAT-ACTT
* ** *
7468976 AAATAAAAAGGTATAATTTAAGTGAAACAATAAATAAAAACTTAAACAAATCGTATTT
1 AAATAAAAAGATATAATTTAAGT-AAACAATAAATAAAAACTTAAACAAATAATACTT
*
7469034 AAATAAAAAGATATAATTTAATTAAA-AATA
1 AAATAAAAAGATATAATTTAAGTAAACAATA
7469064 GAAAATAGAA
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 4 0.05
57 3 0.04
58 46 0.61
59 23 0.30
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.29
Consensus pattern (57 bp):
AAATAAAAAGATATAATTTAAGTAAACAATAAATAAAAACTTAAACAAATAATACTT
Found at i:7471724 original size:22 final size:21
Alignment explanation
Indices: 7471699--7471739 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7471689 GGAGTTTGAC
*
7471699 TATTTTTAGTCTTTTCTTGAGT
1 TATTTTTA-TCATTTCTTGAGT
7471721 TATTTTTATCATTTCTTGA
1 TATTTTTATCATTTCTTGA
7471740 AATGTATCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.10, G:0.10, T:0.63
Consensus pattern (21 bp):
TATTTTTATCATTTCTTGAGT
Found at i:7472637 original size:15 final size:15
Alignment explanation
Indices: 7472617--7472647 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7472607 TTTGACTATG
*
7472617 AGATATTTTAATGGA
1 AGATATTTCAATGGA
7472632 AGATATTTCAATGGA
1 AGATATTTCAATGGA
7472647 A
1 A
7472648 TTTGGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (15 bp):
AGATATTTCAATGGA
Found at i:7473813 original size:37 final size:37
Alignment explanation
Indices: 7473762--7473866 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
7473752 CATTTTCGTC
7473762 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
7473799 TTACTAGGATTCAAACTCCTAAAAATAAGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * * *
7473836 CTACTAAGATTTAAATTCTTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
7473867 CCACAAGCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:7474249 original size:17 final size:18
Alignment explanation
Indices: 7474223--7474262 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7474213 ATTATATGGA
7474223 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
7474239 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
7474257 TATTAT
1 TATTAT
7474263 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:7479151 original size:183 final size:183
Alignment explanation
Indices: 7478830--7479366 Score: 941
Period size: 183 Copynumber: 2.9 Consensus size: 183
7478820 ACTAAATCCG
* * *
7478830 TAAAGTTGAGCTATTCCACTAAGGCAATTGATTATAGAGGAAACTCGAAAGCCCTGGATTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
*
7478895 ATAGATTATGTTCAAACTATGACACTGCTCGAACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
*
7478960 TGGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
7479013 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
*
7479078 ATAGATTATGTTCAAACTATGACACTGTTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
7479143 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
* *
7479196 TAAAGCTGAGCTATCCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAATCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
** * *
7479261 ATAGATTACATTCAAA-TCATGACATTGCTCGGATACTTGGCAATTCGGTGTTTGCTCCACTGCT
66 ATAGATTATGTTCAAACT-ATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCT
*
7479325 TTTGTCAGGTCAAAGACTTTGTGATGAGATGAACCCTTCAGT
130 TTTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGT
7479367 TAAACCTGAT
Statistics
Matches: 339, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
182 1 0.00
183 338 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (183 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
Found at i:7480605 original size:72 final size:76
Alignment explanation
Indices: 7480510--7480679 Score: 219
Period size: 72 Copynumber: 2.3 Consensus size: 76
7480500 GATGATTATC
* * *
7480510 TCACTCAA-ATTTGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTCGAAAG
1 TCACTCAAGA-TTGTTTTTCTTAAAACA-AGATTTGTCTCACTTGAGACCGTTTTCACTCGAAAG
7480572 AA-G-A-TTCATT
64 AAGGCATTTCATT
* *
7480582 TCATTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCGTTTTCACTCGAAAGAA
1 TCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCGTTTTCACTCGAAAGAA
7480647 GGCATTTCATT
66 GGCATTTCATT
*
7480658 TCACTCAAGACTGTTTTT-TTAA
1 TCACTCAAGATTGTTTTTCTTAA
7480680 GAAGATTTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
71 1 0.01
72 45 0.53
73 11 0.13
74 1 0.01
75 5 0.06
76 22 0.26
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (76 bp):
TCACTCAAGATTGTTTTTCTTAAAACAAGATTTGTCTCACTTGAGACCGTTTTCACTCGAAAGAA
GGCATTTCATT
Found at i:7480708 original size:73 final size:72
Alignment explanation
Indices: 7480521--7480716 Score: 168
Period size: 72 Copynumber: 2.7 Consensus size: 72
7480511 CACTCAAATT
* * * ** *
7480521 TGTTTTTCTTAAAACATA-CTTTGTCTCACTTGAGACTGTTTT-TCTCGAAAGAAGATTCATTTC
1 TGTTTTTCTT-AAACA-AGATTTATCTCGCTTGAGACCATTTTCACTCGAAAGAAGATTCATTTC
* *
7480584 ATTCAAGAT
64 ACTCAAGAC
* *
7480593 TGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGACCGTTTTCACTCGAAAGAAGGCATTTCATT
1 TGTTTTTCTT-AAACAAGATTTATCTCGCTTGAGACCATTTTCACTCGAAAGAA-G-A-TTCATT
7480658 TCACTCAAGAC
62 TCACTCAAGAC
* * * *
7480669 TGTTTTT-TT-AAGAAGATTTTATCTTGCTTGAGA-TATTTTCCCTCGAAA
1 TGTTTTTCTTAAACAAGA-TTTATCTCGCTTGAGACCATTTTCACTCGAAA
7480717 CAGAAAATTT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
71 1 0.01
72 37 0.35
73 28 0.26
74 15 0.14
75 3 0.03
76 22 0.21
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (72 bp):
TGTTTTTCTTAAACAAGATTTATCTCGCTTGAGACCATTTTCACTCGAAAGAAGATTCATTTCAC
TCAAGAC
Found at i:7480830 original size:39 final size:39
Alignment explanation
Indices: 7480773--7480847 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
7480763 CCTTGAAATT
* * *
7480773 AATTTTTTCTCTCCTGAGATAGTTTCTCTCGAAACAGAA
1 AATTTTGTCTCTCCTGAGACAGTCTCTCTCGAAACAGAA
*
7480812 AATTTTGTCTC-CCTTGAGACAGTCTCTCTTGAAACA
1 AATTTTGTCTCTCC-TGAGACAGTCTCTCTCGAAACA
7480848 TAAACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.06
39 29 0.94
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (39 bp):
AATTTTGTCTCTCCTGAGACAGTCTCTCTCGAAACAGAA
Found at i:7480862 original size:104 final size:105
Alignment explanation
Indices: 7480750--7480960 Score: 361
Period size: 105 Copynumber: 2.0 Consensus size: 105
7480740 ACAGTTTCTC
* *
7480750 TTGAAAACATTTCCCTTGAAATTA-ATTTTTTCTCTCCTGAGATAGTTTCTCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAA
*
7480814 TTTTGTCTCCCTTGAGACAGTCTCTCTTGAAACATAAACA
66 TTTTGTCTCCCTTGAGACAGTCTCTCTTAAAACATAAACA
* *
7480854 TTGAAAACATTTCCCTTGAAATGATTTTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAA
1 TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAA
*
7480919 TTTTGTCTCCCTTGAGACAGTTTCTCTTAAAACATAAACA
66 TTTTGTCTCCCTTGAGACAGTCTCTCTTAAAACATAAACA
7480959 TT
1 TT
7480961 TCCCTTGAAA
Statistics
Matches: 100, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
104 23 0.23
105 77 0.77
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.38
Consensus pattern (105 bp):
TTGAAAACATTTCCCTTGAAATGATATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAA
TTTTGTCTCCCTTGAGACAGTCTCTCTTAAAACATAAACA
Found at i:7480952 original size:39 final size:40
Alignment explanation
Indices: 7480880--7480961 Score: 94
Period size: 39 Copynumber: 2.1 Consensus size: 40
7480870 TGAAATGATT
* * * *
7480880 TTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAA-A
1 TTTTGTCTCCCTTGAGACAGTTTCCCTCAAAACAGAAACA
* * *
7480919 TTTTGTCTCCCTTGAGACAGTTTCTCTTAAAACATAAACA
1 TTTTGTCTCCCTTGAGACAGTTTCCCTCAAAACAGAAACA
7480959 TTT
1 TTT
7480962 CCCTTGAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
39 31 0.89
40 4 0.11
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (40 bp):
TTTTGTCTCCCTTGAGACAGTTTCCCTCAAAACAGAAACA
Found at i:7481012 original size:36 final size:36
Alignment explanation
Indices: 7480960--7481029 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
7480950 ACATAAACAT
* *
7480960 TTCCCTTGAAATGAATTTTATCTCGCTTGAGACAGC
1 TTCCCTTGAAACGAATTTTATCTCCCTTGAGACAGC
* *
7480996 TTCCCTTGAAACGAATTTTGTCTCCCTTTAGACA
1 TTCCCTTGAAACGAATTTTATCTCCCTTGAGACA
7481030 ATTTCTCTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (36 bp):
TTCCCTTGAAACGAATTTTATCTCCCTTGAGACAGC
Found at i:7481433 original size:105 final size:104
Alignment explanation
Indices: 7481234--7481759 Score: 736
Period size: 105 Copynumber: 5.0 Consensus size: 104
7481224 ATATCGTGAC
* * * * * *
7481234 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
*
7481299 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
65 AA-TTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
7481340 ACTCCAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
*
7481405 ATCTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
7481445 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
* *
7481510 ATCTCATAGCCAAGTTCAACTTCACAACGAAGGATATTGG
66 AT-TCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
7481550 ACTCCAGACAACGCAAGTTCAACTCCACGACGAAGGGACCTCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
* *
7481611 ATTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * * *
7481650 ACTCGAGACAACACAAGTTCAACTTTACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCC
* * *
7481715 GATTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGG
65 AATT-CAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
7481756 ACTC
1 ACTC
7481760 GGAACAATGC
Statistics
Matches: 382, Mismatches: 31, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
100 78 0.20
101 4 0.01
102 3 0.01
103 4 0.01
104 4 0.01
105 206 0.54
106 83 0.22
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (104 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
ATTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:7482331 original size:21 final size:21
Alignment explanation
Indices: 7482306--7482369 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
7482296 TTCGTCCTAC
7482306 TAGGATTCAAACTCCTAAAAA
1 TAGGATTCAAACTCCTAAAAA
* ** *
7482327 TAGGA-T-AAAAT--T-TTAC
1 TAGGATTCAAACTCCTAAAAA
7482343 TAGGATTCAAACTCCTAAAAA
1 TAGGATTCAAACTCCTAAAAA
7482364 TAGGAT
1 TAGGAT
7482370 AGAGTTCTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
16 6 0.20
17 2 0.07
18 4 0.13
19 4 0.13
20 2 0.07
21 12 0.40
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.28
Consensus pattern (21 bp):
TAGGATTCAAACTCCTAAAAA
Found at i:7482353 original size:37 final size:37
Alignment explanation
Indices: 7482302--7482406 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
7482292 CATTTTCGTC
7482302 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * *
7482339 TTACTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * * *
7482376 CTACTAAGATTTAAATTCTTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
7482407 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:7482789 original size:17 final size:18
Alignment explanation
Indices: 7482763--7482802 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7482753 ATTATATGGA
7482763 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
7482779 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
7482797 TATTAT
1 TATTAT
7482803 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:7486441 original size:44 final size:44
Alignment explanation
Indices: 7486374--7486474 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
7486364 GCAACTCAAC
* * * **
7486374 AGTATCAATACTGTCCAAGGAGTATCGATAATACTATGTGTAGT
1 AGTATCGATACCGTCCAAGGAGTATCGATAATACCATGTAAAGT
*
7486418 AGTATCGATACCGTCC-AGTGAGTATCGATACTACCATGTAAAGT
1 AGTATCGATACCGTCCAAG-GAGTATCGATAATACCATGTAAAGT
7486462 AGTATCGATACCG
1 AGTATCGATACCG
7486475 AACATGGTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 2 0.04
44 48 0.96
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
AGTATCGATACCGTCCAAGGAGTATCGATAATACCATGTAAAGT
Found at i:7486834 original size:17 final size:18
Alignment explanation
Indices: 7486814--7486850 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
7486804 GTGATATTCA
*
7486814 AATATTTGAATC-AATAT
1 AATATTTAAATCGAATAT
7486831 AATATTTAAATCGAATAT
1 AATATTTAAATCGAATAT
7486849 AA
1 AA
7486851 AATCTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (18 bp):
AATATTTAAATCGAATAT
Found at i:7486997 original size:13 final size:13
Alignment explanation
Indices: 7486961--7487000 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
7486951 AAGATTTTCT
* *
7486961 TTTGAAAAATCAT
1 TTTGAAAAATTAC
7486974 TTTGAAAAATTAC
1 TTTGAAAAATTAC
7486987 TTTGAAAAATTAC
1 TTTGAAAAATTAC
7487000 T
1 T
7487001 CCCCATTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (13 bp):
TTTGAAAAATTAC
Found at i:7489265 original size:21 final size:20
Alignment explanation
Indices: 7489239--7489278 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7489229 GAACAATATC
*
7489239 GATACTCATTCAAGTAGTATT
1 GATACT-ATGCAAGTAGTATT
*
7489260 GATACTATGCTAGTAGTAT
1 GATACTATGCAAGTAGTAT
7489279 CCATACCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (20 bp):
GATACTATGCAAGTAGTATT
Found at i:7497106 original size:46 final size:46
Alignment explanation
Indices: 7497064--7497357 Score: 462
Period size: 46 Copynumber: 6.4 Consensus size: 46
7497054 TATTCATTGG
*
7497064 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTCA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7497110 TGACATTCTTTCATGCCGATAATACACCGTTATGCATTTTCATTTA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7497156 TAGCATCCTTTCATGCCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
7497202 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
* * *
7497248 TGGCATCCTTTCAAGCCTATAATACACCGTTATGCATTTTTCATTTA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCA-TTTTCATTTA
* *
7497295 TGGCATCCATTCATGCCTATAATGCACCGTTATGCATTTTCATTTA
1 TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
*
7497341 TGACATCCTTTCATGCC
1 TGGCATCCTTTCATGCC
7497358 AAAGGAATTT
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 183 0.81
47 43 0.19
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (46 bp):
TGGCATCCTTTCATGCCGATAATGCACCGTTATGCATTTTCATTTA
Found at i:7497503 original size:81 final size:81
Alignment explanation
Indices: 7497357--7497750 Score: 527
Period size: 81 Copynumber: 5.0 Consensus size: 81
7497347 CCTTTCATGC
* * * * *
7497357 CAAAGGAATTTAACCTTTCATCTAACTTGCATTATTGACACCTTTCTGCCAAATGCACAGTTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7497422 CAATTAGTCTTTTACT
66 CAATTAGTCTTTTACT
* * *
7497438 CAAAAGTATTTAACCATTCATCTAACTGGCATGATTGATACCTTTCTGTCAAATGCACAGCTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
*
7497503 CAATTAGTCATTTACT
66 CAATTAGTCTTTTACT
* ** *
7497519 CAAAGGTATTTAACCTTTCATCTAACTGACATGATTGACACCTTTCTGTCAAATGCGTAACTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7497584 CAATTAGTCTTTTACT
66 CAATTAGTCTTTTACT
* * * *
7497600 GAAAGGTACTTAACCTTTCATCTAACTGGCATGATTGATACCTTTCTGTCAATTGCACAGCTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7497665 CAATTAG--------T
66 CAATTAGTCTTTTACT
* * * * *
7497673 C-AAGGTATTTAATCTTTCATCCAACTAGCATGATTGACACTTTTCTGTCAAATGCACAGTTAGG
1 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7497737 CAATTAGTCTTTTA
66 CAATTAGTCTTTTA
7497751 TTTTAAAACA
Statistics
Matches: 272, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
72 62 0.23
73 1 0.00
81 209 0.77
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (81 bp):
CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
CAATTAGTCTTTTACT
Found at i:7497756 original size:72 final size:72
Alignment explanation
Indices: 7497602--7497745 Score: 216
Period size: 72 Copynumber: 2.0 Consensus size: 72
7497592 CTTTTACTGA
* * * * *
7497602 AAGGTACTTAACCTTTCATCTAACTGGCATGATTGATACCTTTCTGTCAATTGCACAGCTAGGCA
1 AAGGTATTTAACCTTTCATCCAACTAGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGGCA
7497667 ATTAGTC
66 ATTAGTC
* * *
7497674 AAGGTATTTAATCTTTCATCCAACTAGCATGATTGACACTTTTCTGTCAAATGCACAGTTAGGCA
1 AAGGTATTTAACCTTTCATCCAACTAGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGGCA
7497739 ATTAGTC
66 ATTAGTC
7497746 TTTTATTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (72 bp):
AAGGTATTTAACCTTTCATCCAACTAGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGGCA
ATTAGTC
Found at i:7498301 original size:21 final size:20
Alignment explanation
Indices: 7498275--7498320 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
7498265 ATTGATACCC
7498275 ACATCAGTATCGATACTAATT
1 ACATCAGTATCGATACT-ATT
* *
7498296 ACATCATTATTGATACTATT
1 ACATCAGTATCGATACTATT
7498316 -CATCA
1 ACATCA
7498321 TAATTATTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 5 0.22
20 3 0.13
21 15 0.65
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.37
Consensus pattern (20 bp):
ACATCAGTATCGATACTATT
Found at i:7502955 original size:46 final size:46
Alignment explanation
Indices: 7502899--7503254 Score: 496
Period size: 46 Copynumber: 7.7 Consensus size: 46
7502889 TAATATACCA
* ** *
7502899 TTATGTATTTTCATTGGTGGCATCATTTCATGCCGATAATGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* *
7502945 TTATGCATTTTCATTCATGGCATCCTTTCATGCCAATAATGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* * *
7502991 TTATGTATTTTGATTTATGGCATCCTTTCATGCCGATAATGCACTG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* * *
7503037 TTATGCATTTTTATTTATGGTATCCTTTCATGCCGATAATGCACCA
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* *
7503083 TTATGCATTTTCATTTATGGCATCCTTTCATGTCGATAATGAACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* *
7503129 TTATGCATTTTCATTTATGACATCCTTTCATGCCGATAATGAACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* * * * *
7503175 TCATACATTTTCATTTATGGCATCCTTTAATGCCTATACTGCACCG
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
* **
7503221 TTATGCCTTTTCATTTATTACATCCTTTCATGCC
1 TTATGCATTTTCATTTATGGCATCCTTTCATGCC
7503255 AAAGGCATTT
Statistics
Matches: 275, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 275 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (46 bp):
TTATGCATTTTCATTTATGGCATCCTTTCATGCCGATAATGCACCG
Found at i:7503347 original size:81 final size:81
Alignment explanation
Indices: 7503254--7503645 Score: 423
Period size: 81 Copynumber: 5.0 Consensus size: 81
7503244 CCTTTCATGC
* * * * * * * * * *
7503254 CAAAGGCATTTAACATTTCATCTAAAAT-TCATTATTCACCCCTTTCTGCCATATTCACAGTTAG
1 CAAAGGTATTTAACATTTCATCT-AACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAG
7503318 GCAATTAGTCTTTTACT
65 GCAATTAGTCTTTTACT
* *
7503335 CAAAGGTATTTAACCA-TTCATCTAACTGGCATGATTGACACCTTTCTATCAAATGCACCGCTAG
1 CAAAGGTATTTAA-CATTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAG
*
7503399 ACAATTAGTCTTTTACT
65 GCAATTAGTCTTTTACT
* * * * *
7503416 CAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACC-TTATGTTAAATGCGCAACTAGG
1 CAAAGGTATTTAACATTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7503480 CAATTAGTCTTTTACT
66 CAATTAGTCTTTTACT
* * *
7503496 CAAAGGTATCTAACCTTTCATCTAACT-GCATGATTGACACCTTTCTGTCAAATGCACAACTAGG
1 CAAAGGTATTTAACATTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7503560 CAATTAG--------T
66 CAATTAGTCTTTTACT
* * * * * * *
7503568 C-AAGATATTTAACCTTTCATCTAACTGTCATGATTGCCACTTTTCTATCAAATGCACAACTAGG
1 CAAAGGTATTTAACATTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
7503632 CAATTAGTCTTTTA
66 CAATTAGTCTTTTA
7503646 TTTTTAAAAC
Statistics
Matches: 268, Mismatches: 31, Indels: 26
0.82 0.10 0.08
Matches are distributed among these distances:
71 23 0.09
72 42 0.16
79 14 0.05
80 87 0.32
81 100 0.37
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (81 bp):
CAAAGGTATTTAACATTTCATCTAACTGGCATGATTGACACCTTTCTGTCAAATGCACAGCTAGG
CAATTAGTCTTTTACT
Found at i:7503511 original size:80 final size:81
Alignment explanation
Indices: 7503315--7503645 Score: 461
Period size: 80 Copynumber: 4.2 Consensus size: 81
7503305 TATTCACAGT
*
7503315 TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCATTCATCTAACTGGCATGATTGACACCTTT
1 TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
**
7503380 CTATCAAATGCACCGC
66 CTATCAAATGCACAAC
*
7503396 TAGACAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTA
1 TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTT-
* *
7503461 TGT-T-AAATGCGCAAC
65 TCTATCAAATGCACAAC
*
7503476 TAGGCAATTAGTCTTTTACTCAAAGGTATCTAACCTTTCATCTAACT-GCATGATTGACACCTTT
1 TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
*
7503540 CTGTCAAATGCACAAC
66 CTATCAAATGCACAAC
* * * *
7503556 TAGGCAATTAG--------TC-AAGATATTTAACCTTTCATCTAACTGTCATGATTGCCACTTTT
1 TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
7503612 CTATCAAATGCACAAC
66 CTATCAAATGCACAAC
7503628 TAGGCAATTAGTCTTTTA
1 TAGGCAATTAGTCTTTTA
7503646 TTTTTAAAAC
Statistics
Matches: 223, Mismatches: 16, Indels: 24
0.85 0.06 0.09
Matches are distributed among these distances:
71 23 0.10
72 42 0.19
78 2 0.01
79 17 0.08
80 74 0.33
81 63 0.28
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (81 bp):
TAGGCAATTAGTCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTT
CTATCAAATGCACAAC
Found at i:7503622 original size:72 final size:71
Alignment explanation
Indices: 7503506--7503640 Score: 234
Period size: 72 Copynumber: 1.9 Consensus size: 71
7503496 CAAAGGTATC
*
7503506 TAACCTTTCATCTAACTGCATGATTGACACCTTTCTGTCAAATGCACAACTAGGCAATTAGTCAA
1 TAACCTTTCATCTAACTGCATGATTGACACCTTTCTATCAAATGCACAACTAGGCAATTAGTCAA
7503571 GATATT
66 GATATT
* *
7503577 TAACCTTTCATCTAACTGTCATGATTGCCACTTTTCTATCAAATGCACAACTAGGCAATTAGTC
1 TAACCTTTCATCTAACTG-CATGATTGACACCTTTCTATCAAATGCACAACTAGGCAATTAGTC
7503641 TTTTATTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
71 18 0.30
72 42 0.70
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (71 bp):
TAACCTTTCATCTAACTGCATGATTGACACCTTTCTATCAAATGCACAACTAGGCAATTAGTCAA
GATATT
Found at i:7503727 original size:21 final size:22
Alignment explanation
Indices: 7503703--7503743 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7503693 ACACACATTA
7503703 TAAACATATA-TAATATAAATT
1 TAAACATATATTAATATAAATT
*
7503724 TAAACATATATTAATTTAAA
1 TAAACATATATTAATATAAA
7503744 CATTCTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAACATATATTAATATAAATT
Found at i:7503739 original size:16 final size:16
Alignment explanation
Indices: 7503715--7503746 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7503705 AACATATATA
7503715 ATATAAATTTAAACAT
1 ATATAAATTTAAACAT
*
7503731 ATATTAATTTAAACAT
1 ATATAAATTTAAACAT
7503747 TCTAGGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAAATTTAAACAT
Found at i:7509588 original size:32 final size:32
Alignment explanation
Indices: 7509552--7509625 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
7509542 GATGTCATTT
* *
7509552 AGAGTCGCATT-TGTATAATGTCGAGTCGAGTC
1 AGAGTCGCATTCAG-ATAATGACGAGTCGAGTC
* **
7509584 AGAGTCACATTCAGATAATGACTTGTCGAGTC
1 AGAGTCGCATTCAGATAATGACGAGTCGAGTC
7509616 AGAGTCGCAT
1 AGAGTCGCAT
7509626 CTAGAAAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 34 0.97
33 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (32 bp):
AGAGTCGCATTCAGATAATGACGAGTCGAGTC
Found at i:7511297 original size:17 final size:17
Alignment explanation
Indices: 7511277--7511332 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
7511267 TCCAAATGAT
7511277 GTTCATTTAAGCATCTA
1 GTTCATTTAAGCATCTA
* * *
7511294 GTTCACTTATGGAATC-A
1 GTTCATTTA-AGCATCTA
* *
7511311 ATTCATTTATGCATCTA
1 GTTCATTTAAGCATCTA
7511328 GTTCA
1 GTTCA
7511333 GTAAATAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
16 4 0.14
17 21 0.72
18 4 0.14
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (17 bp):
GTTCATTTAAGCATCTA
Found at i:7511397 original size:17 final size:17
Alignment explanation
Indices: 7511360--7511429 Score: 70
Period size: 17 Copynumber: 4.1 Consensus size: 17
7511350 TTCATGCATT
*
7511360 TAGTTCATTAA-TAAAGT
1 TAGTTCATTAATTAAA-C
7511377 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* * *
7511394 TAGTTCAATCATTAAAT
1 TAGTTCATTAATTAAAC
* *
7511411 TAGTGCATTAATCAAAC
1 TAGTTCATTAATTAAAC
7511428 TA
1 TA
7511430 ACTCTTAATT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
17 39 0.91
18 4 0.09
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:7511398 original size:34 final size:34
Alignment explanation
Indices: 7511360--7511429 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
7511350 TTCATGCATT
* * *
7511360 TAGTTC-ATTAATAAAGTTAGTTCATTAATTAAAC
1 TAGTTCAATCAATAAA-TTAGTGCATTAATCAAAC
*
7511394 TAGTTCAATCATTAAATTAGTGCATTAATCAAAC
1 TAGTTCAATCAATAAATTAGTGCATTAATCAAAC
7511428 TA
1 TA
7511430 ACTCTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 24 0.77
35 7 0.23
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (34 bp):
TAGTTCAATCAATAAATTAGTGCATTAATCAAAC
Found at i:7511414 original size:51 final size:51
Alignment explanation
Indices: 7511326--7511422 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 51
7511316 TTTATGCATC
* * * *
7511326 TAGTTCAGTAAATAAACTACTTCATTCATGCATTTAGTTCATTAATAAAGT
1 TAGTTCAGTAAATAAACTACTTCAATCATGAAATTAGTGCATTAATAAAGT
* * * *
7511377 TAGTTCATTAATTAAACTAGTTCAATCATTAAATTAGTGCATTAAT
1 TAGTTCAGTAAATAAACTACTTCAATCATGAAATTAGTGCATTAAT
7511423 CAAACTAACT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (51 bp):
TAGTTCAGTAAATAAACTACTTCAATCATGAAATTAGTGCATTAATAAAGT
Found at i:7516710 original size:18 final size:18
Alignment explanation
Indices: 7516689--7516737 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
7516679 CATAGTTGTG
*
7516689 GGAAGACCCATTGATGTA
1 GGAAAACCCATTGATGTA
*
7516707 GGAAAACTCATTGATGTA
1 GGAAAACCCATTGATGTA
*
7516725 GGAAAACTCATTG
1 GGAAAACCCATTG
7516738 TTGATGCAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (18 bp):
GGAAAACCCATTGATGTA
Found at i:7516743 original size:21 final size:18
Alignment explanation
Indices: 7516697--7516737 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
7516687 TGGGAAGACC
7516697 CATTGATGTAGGAAAACT
1 CATTGATGTAGGAAAACT
7516715 CATTGATGTAGGAAAACT
1 CATTGATGTAGGAAAACT
7516733 CATTG
1 CATTG
7516738 TTGATGCAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (18 bp):
CATTGATGTAGGAAAACT
Found at i:7521903 original size:24 final size:24
Alignment explanation
Indices: 7521876--7521924 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
7521866 TGTAGGGTGT
7521876 CTTGCCAAGGTAATGACCCCATTA
1 CTTGCCAAGGTAATGACCCCATTA
* *
7521900 CTTGCCAAGGTAATGAGCTCATTA
1 CTTGCCAAGGTAATGACCCCATTA
7521924 C
1 C
7521925 CAAAGCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (24 bp):
CTTGCCAAGGTAATGACCCCATTA
Found at i:7524949 original size:68 final size:62
Alignment explanation
Indices: 7524834--7524957 Score: 158
Period size: 68 Copynumber: 1.9 Consensus size: 62
7524824 AAGATAATTG
* *
7524834 TATATTTTTGAATATTTTAAATTAAAATAATATCTATTTAAGTTTGGATAATAAAAAAAGTT
1 TATATTTTTGAATATTTCAAATTAAAATAATATCTATTTAAATTTGGATAATAAAAAAAGTT
* *
7524896 TATATCTTTTGAATATTTCAAATTAAAAGATATTATTATCTGTTTAAATTTGGATATTAAAA
1 TATAT-TTTTGAATATTTCAAATT-AAA-ATA--A-TATCTATTTAAATTTGGATAATAAAA
7524958 GATATTTGGT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
62 5 0.10
63 17 0.33
64 3 0.06
65 3 0.06
67 1 0.02
68 23 0.44
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (62 bp):
TATATTTTTGAATATTTCAAATTAAAATAATATCTATTTAAATTTGGATAATAAAAAAAGTT
Found at i:7536338 original size:84 final size:82
Alignment explanation
Indices: 7536195--7536357 Score: 238
Period size: 84 Copynumber: 2.0 Consensus size: 82
7536185 ATGTTTTAGG
* *
7536195 ATATTATTTTAAATATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGTTTTAACTGT
1 ATATTATTTTAAATATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAATTTTAACTAT
*
7536260 TCTAATTATGATTTGGT
66 TCTAATTAGGATTTGGT
* *
7536277 ATATTATTTTAAATA-TATTTTACCTTATCTTTGTTTTAGGTATTTTAGTTTAAATAATTTTAAG
1 ATATTATTTTAAATATTATATT---TTATCTTTGTTTTAGGTATTTTAGTTTAAATAATTTTAAC
*
7536341 TATTTTAATTAGGATTT
63 TATTCTAATTAGGATTT
7536358 ATTTTTTTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 5 0.07
82 15 0.21
84 52 0.72
ACGTcount: A:0.29, C:0.04, G:0.10, T:0.57
Consensus pattern (82 bp):
ATATTATTTTAAATATTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAATTTTAACTAT
TCTAATTAGGATTTGGT
Found at i:7538919 original size:24 final size:24
Alignment explanation
Indices: 7538887--7538933 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
7538877 TGTGATATGT
*
7538887 TTTTCTCTGTTCTTGTGGCACATA
1 TTTTATCTGTTCTTGTGGCACATA
7538911 TTTTATCTGTTCTTGTGGCACAT
1 TTTTATCTGTTCTTGTGGCACAT
7538934 CAATCTTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.19, G:0.17, T:0.51
Consensus pattern (24 bp):
TTTTATCTGTTCTTGTGGCACATA
Found at i:7545077 original size:54 final size:54
Alignment explanation
Indices: 7544995--7545117 Score: 183
Period size: 54 Copynumber: 2.3 Consensus size: 54
7544985 ATTACATGGG
* ** *
7544995 GTTGCACACACAGTGTCAATATGGAAATTCATAAAGTCATTATGAATTTATTAA
1 GTTGCACACACAGTGCCAATACAGAAATTCATAAACTCATTATGAATTTATTAA
* *
7545049 GTTGCACACACAGTGCCAATACATAAATTCATAAACTCATTATGAATTTCTTAA
1 GTTGCACACACAGTGCCAATACAGAAATTCATAAACTCATTATGAATTTATTAA
*
7545103 GTTGCACACATAGTG
1 GTTGCACACACAGTG
7545118 TCATTCGGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (54 bp):
GTTGCACACACAGTGCCAATACAGAAATTCATAAACTCATTATGAATTTATTAA
Found at i:7552624 original size:47 final size:47
Alignment explanation
Indices: 7552555--7552652 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
7552545 TTTCCCAATT
* *
7552555 TATGTTGAATGAGAATGAATGGTACATGAGTTTCACCTAAGTGTTGA
1 TATGTTGAATGAGAATGAATGGTACATGAGTTGCACCTAAGTGTCGA
* * *
7552602 TATGTTGAATGCGAATGCATGGTACATGTGTTGCACCTAAGTGTCGA
1 TATGTTGAATGAGAATGAATGGTACATGAGTTGCACCTAAGTGTCGA
7552649 TATG
1 TATG
7552653 GTAATTCACA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.34
Consensus pattern (47 bp):
TATGTTGAATGAGAATGAATGGTACATGAGTTGCACCTAAGTGTCGA
Found at i:7552710 original size:53 final size:53
Alignment explanation
Indices: 7552641--7552915 Score: 455
Period size: 53 Copynumber: 5.2 Consensus size: 53
7552631 GTTGCACCTA
*
7552641 AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCAAACAT
1 AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
*
7552694 AGTG-CTGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTTCACACAT
1 AGTGTC-GATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
* *
7552747 AGTGTCCATATGGTAATTCACAAACTCATTGTGAATTCCATGGTTGCACACAT
1 AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
7552800 AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
1 AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
* *
7552853 AGTG-CTGATATGGTAATTCACAAACTCATTATGAATTCCATTGTTACACACAT
1 AGTGTC-GATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
*
7552906 AATGTCGATA
1 AGTGTCGATA
7552916 GTACACATAG
Statistics
Matches: 208, Mismatches: 10, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
52 2 0.01
53 204 0.98
54 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (53 bp):
AGTGTCGATATGGTAATTCACAAACTCATTATGAATTCCATGGTTGCACACAT
Found at i:7552790 original size:30 final size:30
Alignment explanation
Indices: 7552756--7552843 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 30
7552746 TAGTGTCCAT
7552756 ATGGTAATTCACAAACTCATTGTGAATTCC
1 ATGGTAATTCACAAACTCATTGTGAATTCC
* * *
7552786 ATGGT--TGCACACA-T-AGTGTCG-A-T--
1 ATGGTAATTCACAAACTCATTGT-GAATTCC
*
7552809 ATGGTAATTCACAAACTCATTATGAATTCC
1 ATGGTAATTCACAAACTCATTGTGAATTCC
7552839 ATGGT
1 ATGGT
7552844 TGCACACATA
Statistics
Matches: 42, Mismatches: 7, Indels: 18
0.63 0.10 0.27
Matches are distributed among these distances:
23 5 0.12
25 7 0.17
26 7 0.17
27 6 0.14
28 7 0.17
30 10 0.24
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (30 bp):
ATGGTAATTCACAAACTCATTGTGAATTCC
Found at i:7556747 original size:53 final size:53
Alignment explanation
Indices: 7556689--7556903 Score: 306
Period size: 53 Copynumber: 4.1 Consensus size: 53
7556679 CTAAGTGCTT
* * * *
7556689 ATATGGTAATTCACAAACTCATTATGAATTTCATGATTGCACACATAGTGTTG
1 ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
* * * *
7556742 ATATGGTAATTCACAAAATCATTGTGAATTCCGTGGTTACACACATAGTGCCG
1 ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
* * * *
7556795 ATATGGTAATTCACAAACTCATTATGAATTCTATGGTTGCACACATAGAG-CTT
1 ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTC-G
7556848 ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
1 ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
7556901 ATA
1 ATA
7556904 GTACACATAG
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
52 1 0.01
53 139 0.99
54 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (53 bp):
ATATGGTAATTCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
Found at i:7556870 original size:106 final size:106
Alignment explanation
Indices: 7556689--7556903 Score: 344
Period size: 106 Copynumber: 2.0 Consensus size: 106
7556679 CTAAGTGCTT
*
7556689 ATATGGTAATTCACAAACTCATTATGAATTTCATGATTGCACACATAGTGTTGATATGGTAATTC
1 ATATGGTAATTCACAAACTCATTATGAATTTCATGATTGCACACATAGAGTTGATATGGTAATTC
* *
7556754 ACAAAATCATTGTGAATTCCGTGGTTACACACATAGTGCCG
66 ACAAAATCATTATGAATTCCATGGTTACACACATAGTGCCG
*
7556795 ATATGGTAATTCACAAACTCATTATGAA-TTCTATGGTTGCACACATAGAGCTT-ATATGGTAAT
1 ATATGGTAATTCACAAACTCATTATGAATTTC-ATGATTGCACACATAGAG-TTGATATGGTAAT
* *
7556858 TCACAAACTCATTATGAATTCCATGGTTACACACATAGTGTCG
64 TCACAAAATCATTATGAATTCCATGGTTACACACATAGTGCCG
7556901 ATA
1 ATA
7556904 GTACACATAG
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
105 3 0.03
106 96 0.95
107 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (106 bp):
ATATGGTAATTCACAAACTCATTATGAATTTCATGATTGCACACATAGAGTTGATATGGTAATTC
ACAAAATCATTATGAATTCCATGGTTACACACATAGTGCCG
Found at i:7564170 original size:20 final size:20
Alignment explanation
Indices: 7564147--7564276 Score: 147
Period size: 20 Copynumber: 6.6 Consensus size: 20
7564137 TGCGATTTTC
*
7564147 CAAATTCGCAACACGATAGT
1 CAAATTCGCAACACGAAAGT
* *
7564167 CAAATTCTCAACGCGAAAGT
1 CAAATTCGCAACACGAAAGT
*
7564187 CAAATTCGCAACACGATAGT
1 CAAATTCGCAACACGAAAGT
*
7564207 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACACGAAAGT
* **
7564227 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACACGAAAGT
* **
7564246 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACACGAAAGT
7564265 CAAATTCGCAAC
1 CAAATTCGCAAC
7564277 GTGAATTTAA
Statistics
Matches: 99, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
19 35 0.35
20 64 0.65
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (20 bp):
CAAATTCGCAACACGAAAGT
Found at i:7564194 original size:40 final size:40
Alignment explanation
Indices: 7564147--7564276 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
7564137 TGCGATTTTC
*
7564147 CAAATTCGCAACACGATAGTCAAATTCTCAACGCGAAAGT
1 CAAATTCGCAACACGATAGTCAAATTCGCAACGCGAAAGT
7564187 CAAATTCGCAACACGATAGTCAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACACGATAGTCAAATTCGCAACGCGAAAGT
* * * **
7564227 CAAATTCGCAAC-TGA-ATTTCAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACACGATA-GTCAAATTCGCAACGCGAAAGT
7564265 CAAATTCGCAAC
1 CAAATTCGCAAC
7564277 GTGAATTTAA
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
38 17 0.20
39 15 0.18
40 51 0.61
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (40 bp):
CAAATTCGCAACACGATAGTCAAATTCGCAACGCGAAAGT
Found at i:7564283 original size:20 final size:20
Alignment explanation
Indices: 7564066--7564295 Score: 145
Period size: 20 Copynumber: 11.6 Consensus size: 20
7564056 AAATGACCAA
7564066 CAAATTCGCAACGCGAAT-T
1 CAAATTCGCAACGCGAATGT
* * * *
7564085 CGAATTTCGCAAC-CCAGTTT
1 C-AAATTCGCAACGCGAATGT
*
7564105 CCAATTTCGCAACGCGAATATGT
1 -CAAATTCGCAACGCG-A-ATGT
** * *
7564128 -AAA-TCGCATTGCGATTTT
1 CAAATTCGCAACGCGAATGT
*
7564146 CCAAATTCGCAACACG-ATAGT
1 -CAAATTCGCAACGCGAAT-GT
* *
7564167 CAAATTCTCAACGCGAAAGT
1 CAAATTCGCAACGCGAATGT
*
7564187 CAAATTCGCAACACG-ATAGT
1 CAAATTCGCAACGCGAAT-GT
*
7564207 CAAATTCGCAACGCGAAAGT
1 CAAATTCGCAACGCGAATGT
* *
7564227 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATGT
* *
7564246 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATGT
*
7564265 CAAATTCGCAACGTGAAT-T
1 CAAATTCGCAACGCGAATGT
* *
7564284 TAATTTCGCAAC
1 CAAATTCGCAAC
7564296 AGGTTTTATT
Statistics
Matches: 168, Mismatches: 29, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
18 2 0.01
19 52 0.31
20 97 0.58
21 14 0.08
22 1 0.01
23 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATGT
Found at i:7564477 original size:16 final size:16
Alignment explanation
Indices: 7564456--7564486 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7564446 CATCTCTATT
7564456 TTTTTACATAATTTTA
1 TTTTTACATAATTTTA
*
7564472 TTTTTATATAATTTT
1 TTTTTACATAATTTT
7564487 TCAATGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTACATAATTTTA
Found at i:7567385 original size:18 final size:18
Alignment explanation
Indices: 7567352--7567387 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7567342 AAGCAAAAGG
**
7567352 AAATCAAAATTGCAATCA
1 AAATCAAAATCCCAATCA
7567370 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
7567388 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.22, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:7567743 original size:34 final size:34
Alignment explanation
Indices: 7567705--7567793 Score: 133
Period size: 34 Copynumber: 2.6 Consensus size: 34
7567695 TCGAAAATCA
* *
7567705 CGTTGCGAATTTGACTATCGCAACGCTTATTTTG
1 CGTTGCGAATTTGACTATCGCAACACTTATTTCG
7567739 CGTTGCGAATTTGACTATCGCAACACTTATTTCG
1 CGTTGCGAATTTGACTATCGCAACACTTATTTCG
* * *
7567773 TGTTGCGAATTTAACTTTCGC
1 CGTTGCGAATTTGACTATCGC
7567794 GTTGCGAATT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (34 bp):
CGTTGCGAATTTGACTATCGCAACACTTATTTCG
Found at i:7567813 original size:20 final size:20
Alignment explanation
Indices: 7567774--7567813 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7567764 CTTATTTCGT
*
7567774 GTTGCGAATTTAACTTTCGC
1 GTTGCGAATTTAACTATCGC
*
7567794 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTAACTATCGC
7567814 AATGCTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (20 bp):
GTTGCGAATTTAACTATCGC
Found at i:7567822 original size:54 final size:54
Alignment explanation
Indices: 7567738--7567847 Score: 175
Period size: 54 Copynumber: 2.0 Consensus size: 54
7567728 CGCTTATTTT
* *
7567738 GCGTTGCGAATTTGACTATCGCAACACTTATTTCGTGTTGCGAATTTAACTTTC
1 GCGTTGCGAATTTGACTATCGCAACACTTATTTCGCGTTGCGAATTTAACTATC
** *
7567792 GCGTTGCGAATTTGACTATCGCAATGCTTATTTCGCGTTGCGAATTTGACTATC
1 GCGTTGCGAATTTGACTATCGCAACACTTATTTCGCGTTGCGAATTTAACTATC
7567846 GC
1 GC
7567848 AATGCTTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (54 bp):
GCGTTGCGAATTTGACTATCGCAACACTTATTTCGCGTTGCGAATTTAACTATC
Found at i:7567831 original size:34 final size:34
Alignment explanation
Indices: 7567788--7567873 Score: 172
Period size: 34 Copynumber: 2.5 Consensus size: 34
7567778 CGAATTTAAC
7567788 TTTCGCGTTGCGAATTTGACTATCGCAATGCTTA
1 TTTCGCGTTGCGAATTTGACTATCGCAATGCTTA
7567822 TTTCGCGTTGCGAATTTGACTATCGCAATGCTTA
1 TTTCGCGTTGCGAATTTGACTATCGCAATGCTTA
7567856 TTTCGCGTTGCGAATTTG
1 TTTCGCGTTGCGAATTTG
7567874 TACCTTCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.40
Consensus pattern (34 bp):
TTTCGCGTTGCGAATTTGACTATCGCAATGCTTA
Found at i:7567856 original size:88 final size:88
Alignment explanation
Indices: 7567705--7567872 Score: 291
Period size: 88 Copynumber: 1.9 Consensus size: 88
7567695 TCGAAAATCA
*
7567705 CGTTGCGAATTTGACTATCGCAACGCTTATTTTGCGTTGCGAATTTGACTATCGCAACACTTATT
1 CGTTGCGAATTTGACTATCGCAACGCTTATTTCGCGTTGCGAATTTGACTATCGCAACACTTATT
*
7567770 TCGTGTTGCGAATTTAACTTTCG
66 TCGCGTTGCGAATTTAACTTTCG
* **
7567793 CGTTGCGAATTTGACTATCGCAATGCTTATTTCGCGTTGCGAATTTGACTATCGCAATGCTTATT
1 CGTTGCGAATTTGACTATCGCAACGCTTATTTCGCGTTGCGAATTTGACTATCGCAACACTTATT
7567858 TCGCGTTGCGAATTT
66 TCGCGTTGCGAATTT
7567873 GTACCTTCAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (88 bp):
CGTTGCGAATTTGACTATCGCAACGCTTATTTCGCGTTGCGAATTTGACTATCGCAACACTTATT
TCGCGTTGCGAATTTAACTTTCG
Found at i:7569463 original size:21 final size:21
Alignment explanation
Indices: 7569423--7569497 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
7569413 GGAACACTTA
* *
7569423 AACGATGACAGTGGCCTCTTG
1 AACGATGAGAGGGGCCTCTTG
* *
7569444 AACGGTGAGAGGGGCTTCTTCG
1 AACGATGAGAGGGGCCTCTT-G
* *
7569466 -ATGATGATAGGGGCCTCTTG
1 AACGATGAGAGGGGCCTCTTG
*
7569486 AACGATAAGAGG
1 AACGATGAGAGG
7569498 CACCTTTTGA
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 1 0.02
21 39 0.95
22 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.35, T:0.23
Consensus pattern (21 bp):
AACGATGAGAGGGGCCTCTTG
Found at i:7572168 original size:20 final size:20
Alignment explanation
Indices: 7572143--7572200 Score: 91
Period size: 20 Copynumber: 2.9 Consensus size: 20
7572133 TAATATTGTG
7572143 TTTCGCGTTGCGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
*
7572163 TTTCGCGTTGAGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
7572183 TATT-GCGTTGCGAATTTG
1 T-TTCGCGTTGCGAATTTG
7572201 GAATATCGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 33 0.94
21 2 0.06
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTGAC
Found at i:7572218 original size:21 final size:21
Alignment explanation
Indices: 7572192--7572274 Score: 166
Period size: 21 Copynumber: 4.0 Consensus size: 21
7572182 CTATTGCGTT
7572192 GCGAATTTGGAATATCGCAAC
1 GCGAATTTGGAATATCGCAAC
7572213 GCGAATTTGGAATATCGCAAC
1 GCGAATTTGGAATATCGCAAC
7572234 GCGAATTTGGAATATCGCAAC
1 GCGAATTTGGAATATCGCAAC
7572255 GCGAATTTGGAATATCGCAA
1 GCGAATTTGGAATATCGCAA
7572275 TGTGATTTAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (21 bp):
GCGAATTTGGAATATCGCAAC
Found at i:7572704 original size:91 final size:91
Alignment explanation
Indices: 7572582--7572763 Score: 346
Period size: 91 Copynumber: 2.0 Consensus size: 91
7572572 AAGCACACAC
7572582 AGCCGCTCCACATACAAGGTAAATCATGATAAGCAAGACACGATATACGAATCTCATTCTCCTCA
1 AGCCGCTCCACATACAAGGTAAATCATGATAAGCAAGACACGATATACGAATCTCATTCTCCTCA
7572647 GTCGATACACTCTCGAGACTTTTTCA
66 GTCGATACACTCTCGAGACTTTTTCA
* *
7572673 AGCCGCTCGACGTACAAGGTAAATCATGATAAGCAAGACACGATATACGAATCTCATTCTCCTCA
1 AGCCGCTCCACATACAAGGTAAATCATGATAAGCAAGACACGATATACGAATCTCATTCTCCTCA
7572738 GTCGATACACTCTCGAGACTTTTTCA
66 GTCGATACACTCTCGAGACTTTTTCA
7572764 TGACCAGGAG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (91 bp):
AGCCGCTCCACATACAAGGTAAATCATGATAAGCAAGACACGATATACGAATCTCATTCTCCTCA
GTCGATACACTCTCGAGACTTTTTCA
Found at i:7574376 original size:17 final size:16
Alignment explanation
Indices: 7574327--7574398 Score: 76
Period size: 15 Copynumber: 4.5 Consensus size: 16
7574317 CCGTGTCCCG
7574327 ACCCGGATATTTCGGGT
1 ACCCGGAT-TTTCGGGT
*
7574344 ATCCGG-TTTTCGGGT
1 ACCCGGATTTTCGGGT
7574359 ACCCGGATTTTGCGGGT
1 ACCCGGATTTT-CGGGT
* * *
7574376 ACCCGTA-TGTCGAGT
1 ACCCGGATTTTCGGGT
7574391 ACCCGGAT
1 ACCCGGAT
7574399 ACCCATATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
15 23 0.50
16 7 0.15
17 16 0.35
ACGTcount: A:0.15, C:0.25, G:0.31, T:0.29
Consensus pattern (16 bp):
ACCCGGATTTTCGGGT
Found at i:7587062 original size:34 final size:34
Alignment explanation
Indices: 7587002--7587069 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
7586992 TTTCTTGAGA
*
7587002 ATTGTTTTCTCTTTTTTATCA-AGAGAGAATTGTC
1 ATTGTTTTCTCTTTTTGATCAGAGAGA-AATTGTC
7587036 ATTGTTTTCTCTTTGTTAGATC-GAGAGAAATTGT
1 ATTGTTTTCTCTTT-TT-GATCAGAGAGAAATTGT
7587070 AATTTCTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 14 0.47
35 8 0.27
36 8 0.27
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.49
Consensus pattern (34 bp):
ATTGTTTTCTCTTTTTGATCAGAGAGAAATTGTC
Found at i:7590176 original size:21 final size:21
Alignment explanation
Indices: 7590125--7590183 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 21
7590115 AATTATATTT
7590125 TTTTATTTATTTACTA-TATTCC
1 TTTT-TTTATTTA-TATTATTCC
*
7590147 TTTTATTATTTATATTATT-C
1 TTTTTTTATTTATATTATTCC
7590167 TATTTTTTATTATATAT
1 T-TTTTTTATT-TATAT
7590184 ATCTTATATC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.12
21 19 0.59
22 9 0.28
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTTTTATTTATATTATTCC
Found at i:7590179 original size:24 final size:24
Alignment explanation
Indices: 7590118--7590185 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
7590108 TATATTTAAT
7590118 TATA-TTTTT-TTATTTAT-TTAC
1 TATATTTTTTATTATTTATATTAC
*
7590139 TATATTCCTTTTATTATTTATATTAT
1 TATATT--TTTTATTATTTATATTAC
* *
7590165 TCTATTTTTTATTATATATAT
1 TATATTTTTTATTATTTATAT
7590186 CTTATATCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 4 0.10
22 1 0.03
24 18 0.46
25 8 0.21
26 8 0.21
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (24 bp):
TATATTTTTTATTATTTATATTAC
Found at i:7590327 original size:20 final size:18
Alignment explanation
Indices: 7590254--7590336 Score: 67
Period size: 20 Copynumber: 4.3 Consensus size: 18
7590244 ATGTATATAC
*
7590254 ATTTTTTCTTAATATTAT
1 ATTTTTTATTAATATTAT
* **
7590272 ATTTTATACGTTTTTATATAT
1 ATTTTTTA--TTAATAT-TAT
* *
7590293 ATTTTTTCTTAATATTCT
1 ATTTTTTATTAATATTAT
7590311 ATTTTTTATATATATATTAT
1 ATTTTTTAT-TA-ATATTAT
7590331 ATTTTT
1 ATTTTT
7590337 ACTTTATTTT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
18 16 0.33
19 7 0.14
20 17 0.35
21 9 0.18
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (18 bp):
ATTTTTTATTAATATTAT
Found at i:7590501 original size:10 final size:11
Alignment explanation
Indices: 7590465--7590500 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
7590455 ATACACATTA
7590465 TTTTT-ATTTC
1 TTTTTAATTTC
7590475 TTTTTAATTTC
1 TTTTTAATTTC
7590486 TTTTTAATTTC
1 TTTTTAATTTC
7590497 TTTT
1 TTTT
7590501 ACCTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTAATTTC
Found at i:7590582 original size:18 final size:17
Alignment explanation
Indices: 7590561--7590599 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7590551 GTTTTTTAAC
7590561 ATTTTATTCATTTTGTTT
1 ATTTTATT-ATTTTGTTT
*
7590579 ATTTTTATTATTTTTTTT
1 A-TTTTATTATTTTGTTT
7590597 ATT
1 ATT
7590600 ATTTTTTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 2 0.11
18 10 0.53
19 7 0.37
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (17 bp):
ATTTTATTATTTTGTTT
Found at i:7590597 original size:12 final size:12
Alignment explanation
Indices: 7590580--7590606 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7590570 ATTTTGTTTA
7590580 TTTTTATTATTT
1 TTTTTATTATTT
7590592 TTTTTATTATTT
1 TTTTTATTATTT
7590604 TTT
1 TTT
7590607 ACGTGTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTATTATTT
Found at i:7593775 original size:13 final size:13
Alignment explanation
Indices: 7593742--7593805 Score: 71
Period size: 13 Copynumber: 5.0 Consensus size: 13
7593732 ATTCAATCAG
* *
7593742 AACAAAAAGAGAA
1 AACAAAGAGAAAA
7593755 AA-AAAGAGAAAA
1 AACAAAGAGAAAA
7593767 AACAAAGAGAAAA
1 AACAAAGAGAAAA
7593780 TAA-AAAGAGAAAAA
1 -AACAAAGAG-AAAA
7593794 AACAAAG-GAAAA
1 AACAAAGAGAAAA
7593806 TTGAAAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
12 14 0.31
13 21 0.47
14 10 0.22
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.02
Consensus pattern (13 bp):
AACAAAGAGAAAA
Found at i:7593790 original size:26 final size:27
Alignment explanation
Indices: 7593742--7593806 Score: 91
Period size: 26 Copynumber: 2.5 Consensus size: 27
7593732 ATTCAATCAG
* *
7593742 AACAAAAAGAGAA-AAAAAGAG-AAAA
1 AACAAAGAGAAAATAAAAAGAGAAAAA
7593767 AACAAAGAGAAAATAAAAAGAGAAAAA
1 AACAAAGAGAAAATAAAAAGAGAAAAA
7593794 AACAAAG-GAAAAT
1 AACAAAGAGAAAAT
7593807 TGAAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 11 0.31
26 14 0.39
27 11 0.31
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03
Consensus pattern (27 bp):
AACAAAGAGAAAATAAAAAGAGAAAAA
Found at i:7594950 original size:32 final size:31
Alignment explanation
Indices: 7594914--7595019 Score: 122
Period size: 32 Copynumber: 3.4 Consensus size: 31
7594904 GGAACAATGA
7594914 GGGCATCTTTGAAGATTTAACATCAAATGTTG
1 GGGCATCTTTG-AGATTTAACATCAAATGTTG
* *
7594946 GGGCATTTTTTAGATTTAACATCAAATGTTG
1 GGGCATCTTTGAGATTTAACATCAAATGTTG
* * * * **
7594977 GGTCATTTTTTGAGATTCAACATCGAATAATG
1 GGGCA-TCTTTGAGATTTAACATCAAATGTTG
7595009 GGGCATCTTTG
1 GGGCATCTTTG
7595020 GGAATTCAAC
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
31 29 0.46
32 34 0.54
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (31 bp):
GGGCATCTTTGAGATTTAACATCAAATGTTG
Found at i:7594962 original size:31 final size:32
Alignment explanation
Indices: 7594921--7595014 Score: 127
Period size: 31 Copynumber: 2.9 Consensus size: 32
7594911 TGAGGGCATC
7594921 TTTGAAGATTTAACATCAAATGTTGGGGCATTT
1 TTTG-AGATTTAACATCAAATGTTGGGGCATTT
*
7594954 TTT-AGATTTAACATCAAATGTTGGGTCATTT
1 TTTGAGATTTAACATCAAATGTTGGGGCATTT
* * **
7594985 TTTGAGATTCAACATCGAATAATGGGGCAT
1 TTTGAGATTTAACATCAAATGTTGGGGCAT
7595015 CTTTGGGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
31 30 0.56
32 21 0.39
33 3 0.06
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (32 bp):
TTTGAGATTTAACATCAAATGTTGGGGCATTT
Found at i:7595938 original size:36 final size:35
Alignment explanation
Indices: 7595891--7596080 Score: 160
Period size: 36 Copynumber: 5.5 Consensus size: 35
7595881 ATTGGAAACA
*
7595891 TTTCCCTTGAAATAAATTTCATCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTT-ATCTCTCTTGAGACAG
*
7595927 TTTCCCTTGAAACAAA-TTA----T-TTGA-ATATG
1 TTTCCCTTGAAACAAATTTATCTCTCTTGAGACA-G
*** *
7595956 TTTTATTTGAAACAAATTTCATCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTT-ATCTCTCTTGAGACAG
** * * * *
7595992 TTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACCG
1 TTTCCCTTGAAAC-AA-ATTTATCTCTCTTGAGACAG
*
7596029 TTTCTCTTGAAACAAATTTAGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACAAATTTA-TCTCTCTTGAGACAG
7596065 TTTCCCTTGAAACAAA
1 TTTCCCTTGAAACAAA
7596081 ATCTTTGAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 24
0.73 0.12 0.14
Matches are distributed among these distances:
28 2 0.02
29 18 0.15
30 3 0.02
31 1 0.01
34 1 0.01
35 5 0.04
36 61 0.50
37 28 0.23
38 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (35 bp):
TTTCCCTTGAAACAAATTTATCTCTCTTGAGACAG
Found at i:7595966 original size:65 final size:65
Alignment explanation
Indices: 7595795--7595995 Score: 269
Period size: 65 Copynumber: 3.1 Consensus size: 65
7595785 ACAGTTTCCA
* *
7595795 AGTTTCCCTTGAAACAAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCTATTTAGAC
1 AGTTTCCCTTGAAACAAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCTCTTGAGAC
* ** * ** *** *
7595860 AGTTTCTCTTGAAACATAAACATTGGAA-ACATTTCCCTTGAAATAAATTTCATCTCTCTTGAGA
1 AGTTTCCCTTGAAACA-AATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCTCTTGAGA
7595924 C
65 C
*
7595925 AGTTTCCCTTGAAACAAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCCCTTGAGAC
1 AGTTTCCCTTGAAACAAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCTCTTGAGAC
7595990 AGTTTC
1 AGTTTC
7595996 TTTTGGAACT
Statistics
Matches: 111, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
64 8 0.07
65 95 0.86
66 8 0.07
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (65 bp):
AGTTTCCCTTGAAACAAATTATTTGAATATGTTTTATTTGAAACAAATTTCATCTCTCTTGAGAC
Done.