Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 62
Found at i:7596142 original size:65 final size:65
Alignment explanation
Indices: 7596038--7596211 Score: 224
Period size: 65 Copynumber: 2.6 Consensus size: 65
7596028 GTTTCTCTTG
* * **
7596038 AAACAAATTTAGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATTTATTTCCCCTA
1 AAACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCTA
* *
7596103 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTG-AA-ACAAAATCTTCAAATTTATTTCCCC
7596168 TA
64 TA
* * * *
7596170 AAACAAAATTTAATTTCCCTTGAGACCGTTT-TCATGAAACAA
1 AAAC-AAATTTAGTCTCCCTTGAGACAGTTTCTCTTGAAACAA
7596212 CAGATATATT
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
65 37 0.39
66 4 0.04
67 32 0.34
68 22 0.23
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (65 bp):
AAACAAATTTAGTCTCCCTTGAGACAGTTTCTCTTGAAACAAAATCTTCAAATTTATTTCCCCTA
Found at i:7596208 original size:67 final size:67
Alignment explanation
Indices: 7596038--7596210 Score: 208
Period size: 67 Copynumber: 2.6 Consensus size: 67
7596028 GTTTCTCTTG
* * * * **
7596038 AAACAAATTTAGTCTCTCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATTTATTTCCCC
1 AAACAAATTTAATCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTCAAATTTATTTCCCC
7596101 TA
66 TA
** * *
7596103 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTAATCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTCAAATTTATTTCCCC
7596168 TA
66 TA
* *
7596170 AAACAAAATTTAATTTCCCTTGAGACCGTTT-TCATGAAACA
1 AAAC-AAATTTAATCTCCCTTGAGACAGTTTCTCATGAAACA
7596211 ACAGATATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
65 33 0.35
66 2 0.02
67 37 0.39
68 22 0.23
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (67 bp):
AAACAAATTTAATCTCCCTTGAGACAGTTTCTCATGAAACACAAAATCTTCAAATTTATTTCCCC
TA
Found at i:7597106 original size:105 final size:106
Alignment explanation
Indices: 7596920--7597271 Score: 438
Period size: 105 Copynumber: 3.3 Consensus size: 106
7596910 ACGAACGAGC
* *
7596920 TTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAGGGATATTGGACTCATGACAACACAAGCT
1 TTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAGGGATATTGGACTCAAGACAACACAAGCT
*
7596985 CAACTTCACAACGAAGGGGCGGCTGACTATCAACAAACATT
66 CAACTTCACAACGAAGGGGCGGCTGACTGTCAACAAACATT
7597026 TTCCCAGTTTCAGAG-CAATTTCAACTTCACAGCAAGGGATATTGGACTCAAGACAACACAAGCT
1 TTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAGGGATATTGGACTCAAGACAACACAAGCT
* * * *
7597090 CAACTTCACAATGAAGGGGTGACTGATTGTCAACAAACAACTT
66 CAACTTCACAACGAAGGGGCGGCTGACTGTCAACAAAC-A-TT
**** * * * * *
7597133 TTCATTTTCATTCAGAGTCAATTTCAACTTCACATCGAA-GAATATTGAACTCGAGACAACACAA
1 TTCCCAGT--TTCAGAGCCAATTTCAACTTCACAGC-AAGGGATATTGGACTCAAGACAACACAA
* * * * * *
7597197 GCTCAACTTCACAGCGAAGGGGCAGTTGGCTGTCAACAAAAAAT
63 GCTCAACTTCACAACGAAGGGGCGGCTGACTGTCAACAAACATT
*
7597241 TTCCCAGTTCCAGAGCCAATTTCAACTTCAC
1 TTCCCAGTTTCAGAGCCAATTTCAACTTCAC
7597272 GATGGAGGAT
Statistics
Matches: 209, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
105 80 0.38
106 37 0.18
107 6 0.03
108 5 0.02
109 8 0.04
110 71 0.34
111 2 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (106 bp):
TTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCAAGGGATATTGGACTCAAGACAACACAAGCT
CAACTTCACAACGAAGGGGCGGCTGACTGTCAACAAACATT
Found at i:7598665 original size:21 final size:20
Alignment explanation
Indices: 7598641--7598695 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
7598631 TTTTTTTTAA
7598641 TTATTTACTATATTCCT-TTTT
1 TTATTTA-TATATT-CTATTTT
7598662 TTATTTATATTATTCTATTTT
1 TTATTTATA-TATTCTATTTT
7598683 TTATTATATATAT
1 TTATT-TATATAT
7598696 CTTATATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.13
21 23 0.74
22 4 0.13
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATTTATATATTCTATTTT
Found at i:7598684 original size:24 final size:24
Alignment explanation
Indices: 7598631--7598695 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
7598621 TCTTTAATTA
*
7598631 TTTTTTTTAATTAT-TTACTATAT
1 TTTTTTTTATTTATATTACTATAT
* *
7598654 TCCTTTTTTTATTTATATTATTCTAT
1 T--TTTTTTTATTTATATTACTATAT
* *
7598680 TTTTTATTATATATAT
1 TTTTTTTTATTTATAT
7598696 CTTATATCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
23 1 0.03
24 13 0.38
25 12 0.35
26 8 0.24
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTTTTTATTTATATTACTATAT
Found at i:7598788 original size:17 final size:17
Alignment explanation
Indices: 7598768--7598828 Score: 50
Period size: 17 Copynumber: 3.3 Consensus size: 17
7598758 GCATATACAT
7598768 TTTTTCTTAATATTATA
1 TTTTTCTTAATATTATA
**
7598785 TTTTATACGTTTTTATATATA
1 TTTT-T-C-TTAATAT-TATA
*
7598806 TATTTTCTTAATATTCTA
1 T-TTTTCTTAATATTATA
7598824 TTTTT
1 TTTTT
7598829 TCTTTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 6 0.18
20 6 0.18
21 6 0.18
22 3 0.09
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTTCTTAATATTATA
Found at i:7598887 original size:43 final size:42
Alignment explanation
Indices: 7598824--7598958 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 42
7598814 TAATATTCTA
*
7598824 TTTTTTCTTTTATTTATTTATATATATTATATTTTTACTTTAT
1 TTTTTTCTTTTATTTGTTTATATATATTATATTTTTA-TTTAT
* *
7598867 TTTTTTCTATTATTTGTTTATTAATATCATGTATATCTTTATTT-T
1 TTTTTTCTTTTATTTGTTTA-T-ATAT-AT-TATATTTTTATTTAT
* * *
7598912 TTATTTGTTTTACTTAGTATTATATAT-TTATTATTTTTATTTAT
1 TTTTTTCTTTTA-TTTGT-TTATATATATTA-TATTTTTATTTAT
7598956 TTT
1 TTT
7598959 AGTAAATACT
Statistics
Matches: 75, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.03
43 29 0.39
44 4 0.05
45 18 0.24
46 10 0.13
47 12 0.16
ACGTcount: A:0.23, C:0.04, G:0.03, T:0.70
Consensus pattern (42 bp):
TTTTTTCTTTTATTTGTTTATATATATTATATTTTTATTTAT
Found at i:7599096 original size:10 final size:10
Alignment explanation
Indices: 7599074--7599118 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
7599064 TTTTTTAACA
7599074 TTTTATTCATT
1 TTTTATT-ATT
*
7599085 TTGT-TTATT
1 TTTTATTATT
7599094 TTTTATTATT
1 TTTTATTATT
7599104 TTTTATTATT
1 TTTTATTATT
7599114 TTTTA
1 TTTTA
7599119 CGTGTTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 6 0.19
10 22 0.71
11 3 0.10
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTATTATT
Found at i:7602309 original size:2 final size:2
Alignment explanation
Indices: 7602302--7602348 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7602292 TATCTCTATT
7602302 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7602344 TA TA T
1 TA TA T
7602349 TACTGGTATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7602978 original size:83 final size:83
Alignment explanation
Indices: 7602817--7603333 Score: 407
Period size: 83 Copynumber: 6.2 Consensus size: 83
7602807 ACCATGCAGT
* * * * * * * ** *
7602817 TGATATGCCTTTAAGATGAATGAAATCGAACTCGAAAGTCTTGATGTTGGTAGATAACCCTTCTA
1 TGATGTGCCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTT--TGATGACAGATAACCCTTCTC
7602882 GCCTTGAGTTATGCTGCAAA
64 GCCTTGAGTTATGCTGCAAA
* * * *
7602902 AGATGTGTCTTTAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCGT
1 TGATGTGCCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCGC
7602967 CTTGAGTTATGCTGCAAA
66 CTTGAGTTATGCTGCAAA
* * * * ** * *
7602985 TGGTGTGCCTTGGAGCTGAGTGTAGTCGAACTCGATGGTCTTTGGTTGACAGATAACCCTTCTTG
1 TGATGTGCCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTT-GATGACAGATAACCCTTCTCG
* *
7603050 CCTTGAGTTGTGCTGTAAA
65 CCTTGAGTTATGCTGCAAA
* * * * * *
7603069 TGATGTGCCTTGGATCTGAGCGTAGTCTAACTCAAAAGTCTTTGATGACAGATAACACTTCTCGC
1 TGATGTGCCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCGC
*
7603134 CTTGAGTTATGCTGTAAA
66 CTTGAGTTATGCTGCAAA
* * * * * * ** * **
7603152 TAATATGCCCTCGAAGTTGAATGTAATCGAACTCGAGGGTCTTTG--G-CAGATAGCCCTTCTAA
1 TGATGTG-CCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCG
* *
7603214 CCCTGAGTTATGCTGTAAA
65 CCTTGAGTTATGCTGCAAA
* * * * * * ** * *
7603233 TAATATGCCCTCGAAGCTGAATGTAATCAAACTCGAGGGTC-TT--TGCCAGATAGCCCTTCTCG
1 TGATGTG-CCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCG
* * * **
7603295 ACTTAAGCTATAATGCAAA
65 CCTTGAGTTATGCTGCAAA
*
7603314 TGATGTGCCTTGGAGCTGAG
1 TGATGTGCCTTGAAGCTGAG
7603334 CGCAGTCAAA
Statistics
Matches: 357, Mismatches: 71, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
80 13 0.04
81 100 0.28
82 1 0.00
83 111 0.31
84 97 0.27
85 35 0.10
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (83 bp):
TGATGTGCCTTGAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTTCTCGC
CTTGAGTTATGCTGCAAA
Found at i:7603144 original size:167 final size:168
Alignment explanation
Indices: 7602833--7603228 Score: 453
Period size: 167 Copynumber: 2.4 Consensus size: 168
7602823 GCCTTTAAGA
* ** **
7602833 TGAATGAAATCGAACTCGAAAGTC-TTGATGTTGGTAGATAACCCTTCTAGCCTTGAGTTATGCT
1 TGAATGTAATCGAACTCGAGGGTCTTTG--GTTGACAGATAACCCTTCTAGCCTTGAGTTATGCT
* * * *
7602897 GCAAAAGATGTGTCTTTAAGCTGAGTGTAATCGAACTCAAAAGTCTTTGATGACAGATAACCCTT
64 GCAAAAGATGTGCCTTGAAGCTGAGCGTAATCGAACTCAAAAGTCTTTGATGACAGATAACACTT
* ** * * *
7602962 CTCGTCTTGAGTTATGCTGCAAATGGTGTG-CCTTGGAGC
129 CTCGCCTTGAGTTATGCTGCAAATAATATGCCCTCGAAGC
* * * * * *
7603001 TGAGTGTAGTCGAACTCGATGGTCTTTGGTTGACAGATAACCCTTCTTGCCTTGAGTTGTGCTGT
1 TGAATGTAATCGAACTCGAGGGTCTTTGGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGC
* * * * *
7603066 AAATGATGTGCCTTGGATCTGAGCGTAGTCTAACTCAAAAGTCTTTGATGACAGATAACACTTCT
66 AAAAGATGTGCCTTGAAGCTGAGCGTAATCGAACTCAAAAGTCTTTGATGACAGATAACACTTCT
* *
7603131 CGCCTTGAGTTATGCTGTAAATAATATGCCCTCGAAGT
131 CGCCTTGAGTTATGCTGCAAATAATATGCCCTCGAAGC
* * *
7603169 TGAATGTAATCGAACTCGAGGGTCTTT-G--G-CAGATAGCCCTTCTAACCCTGAGTTATGCTG
1 TGAATGTAATCGAACTCGAGGGTCTTTGGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTG
7603229 TAAATAATAT
Statistics
Matches: 191, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
164 26 0.14
165 1 0.01
167 112 0.59
168 49 0.26
169 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (168 bp):
TGAATGTAATCGAACTCGAGGGTCTTTGGTTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGC
AAAAGATGTGCCTTGAAGCTGAGCGTAATCGAACTCAAAAGTCTTTGATGACAGATAACACTTCT
CGCCTTGAGTTATGCTGCAAATAATATGCCCTCGAAGC
Found at i:7603224 original size:81 final size:81
Alignment explanation
Indices: 7603136--7603292 Score: 287
Period size: 81 Copynumber: 1.9 Consensus size: 81
7603126 CTTCTCGCCT
* * *
7603136 TGAGTTATGCTGTAAATAATATGCCCTCGAAGTTGAATGTAATCGAACTCGAGGGTCTTTGGCAG
1 TGAGTTATGCTGTAAATAATATGCCCTCGAAGCTGAATGTAATCAAACTCGAGGGTCTTTGCCAG
7603201 ATAGCCCTTCTAACCC
66 ATAGCCCTTCTAACCC
7603217 TGAGTTATGCTGTAAATAATATGCCCTCGAAGCTGAATGTAATCAAACTCGAGGGTCTTTGCCAG
1 TGAGTTATGCTGTAAATAATATGCCCTCGAAGCTGAATGTAATCAAACTCGAGGGTCTTTGCCAG
7603282 ATAGCCCTTCT
66 ATAGCCCTTCT
7603293 CGACTTAAGC
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (81 bp):
TGAGTTATGCTGTAAATAATATGCCCTCGAAGCTGAATGTAATCAAACTCGAGGGTCTTTGCCAG
ATAGCCCTTCTAACCC
Found at i:7603654 original size:44 final size:44
Alignment explanation
Indices: 7603623--7603707 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 44
7603613 CTGTGGATGT
7603623 GTGGGCACGATATCCTCCGTTCGTGGAGTTGAAATCATGGATCC
1 GTGGGCACGATATCCTCCGTTCGTGGAGTTGAAATCATGGATCC
* * *
7603667 GTTGGTACGATATCCTCC-ATCGTGGAGTTGAAATCATGGAT
1 GTGGGCACGATATCCTCCGTTCGTGGAGTTGAAATCATGGAT
7603708 GACCCCTTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 22 0.58
44 16 0.42
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
GTGGGCACGATATCCTCCGTTCGTGGAGTTGAAATCATGGATCC
Found at i:7604035 original size:43 final size:43
Alignment explanation
Indices: 7603941--7604036 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
7603931 TTCGTTATGA
* * *
7603941 AGTTGAAACCGTGGATGTATGGGCACGATATCCTCCATTGTGG
1 AGTTGAAATCGTGGATCTATGGGCACGATATCCTCCATCGTGG
* * * *
7603984 AGTTGAAATCGTGGATCTGTTGGTACGATATCCTCCGTCGTGG
1 AGTTGAAATCGTGGATCTATGGGCACGATATCCTCCATCGTGG
7604027 AGTTGAAATC
1 AGTTGAAATC
7604037 CACTCTGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (43 bp):
AGTTGAAATCGTGGATCTATGGGCACGATATCCTCCATCGTGG
Found at i:7604366 original size:32 final size:32
Alignment explanation
Indices: 7604325--7604399 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
7604315 TTGCATCAGG
*
7604325 ATGTTGAATC-CCAAAATATACCACAATATTCA
1 ATGTTGAATCTCC-AAATATACCACAACATTCA
* * *
7604357 ATGTTGAATCTCCAAATATGCCCCAACATTTA
1 ATGTTGAATCTCCAAATATACCACAACATTCA
*
7604389 CTGTTGAATCT
1 ATGTTGAATCT
7604400 TTAAAGATGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 35 0.95
33 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (32 bp):
ATGTTGAATCTCCAAATATACCACAACATTCA
Found at i:7605648 original size:2 final size:2
Alignment explanation
Indices: 7605641--7605684 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
7605631 ACTACAAGGG
* * *
7605641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AC AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7605683 AT
1 AT
7605685 GGATAAATGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:7605868 original size:20 final size:20
Alignment explanation
Indices: 7605843--7605888 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
7605833 TTTATGCTTC
7605843 TTGCTCCCGGCATGCCTCAA
1 TTGCTCCCGGCATGCCTCAA
*
7605863 TTGCTCCCGGTATGCCTCAA
1 TTGCTCCCGGCATGCCTCAA
7605883 TTGCTC
1 TTGCTC
7605889 AGGTTCGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (20 bp):
TTGCTCCCGGCATGCCTCAA
Found at i:7609164 original size:2 final size:2
Alignment explanation
Indices: 7609157--7609192 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7609147 GTTATTATGC
7609157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7609193 TACTGTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7612442 original size:28 final size:28
Alignment explanation
Indices: 7612409--7612465 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
7612399 AATCATTGAA
*
7612409 AATCACCACATATCAACTCTATGAATAG
1 AATCACCACATATCAACTCTAGGAATAG
7612437 AATCACCACATATCAACTCTAGGAATAG
1 AATCACCACATATCAACTCTAGGAATAG
7612465 A
1 A
7612466 TATTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.44, C:0.25, G:0.09, T:0.23
Consensus pattern (28 bp):
AATCACCACATATCAACTCTAGGAATAG
Found at i:7612619 original size:32 final size:32
Alignment explanation
Indices: 7612568--7612643 Score: 134
Period size: 32 Copynumber: 2.3 Consensus size: 32
7612558 GATCTAAGAG
7612568 ATAATAATTAATTATATTTTAGATAGAGATAATT
1 ATAATAA-T-ATTATATTTTAGATAGAGATAATT
7612602 ATAATAATATTATATTTTAGATAGAGATAATT
1 ATAATAATATTATATTTTAGATAGAGATAATT
7612634 ATAATAATAT
1 ATAATAATAT
7612644 ATCTCCATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
32 34 0.81
33 1 0.02
34 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (32 bp):
ATAATAATATTATATTTTAGATAGAGATAATT
Found at i:7614086 original size:76 final size:77
Alignment explanation
Indices: 7613948--7614134 Score: 200
Period size: 76 Copynumber: 2.5 Consensus size: 77
7613938 AAATATTATG
* * * * * * * *
7613948 AATATATATA-TAAGAAATATGGTTGCGCCCAAGAATGTCATGGTTCACTAAGAAACAAATTGCG
1 AATATATTTATTAATAAATATGGTTGCGCCAAAAAATGTAATAGTTCACTAAAAAACAAATTGCA
* *
7614012 ATCTAGAATGTT
66 ATATAAAATGTT
* * * *
7614024 AATATATTTATTAATAAAT-TGGTTGTGCCAAAAAATGTAATAGTTCGCTAAAAAATAGATTGCA
1 AATATATTTATTAATAAATATGGTTGCGCCAAAAAATGTAATAGTTCACTAAAAAACAAATTGCA
7614088 ATATAAAATGTT
66 ATATAAAATGTT
* *
7614100 AATATTTTTATTAATAAA-ATGAGTTGCGCCCAAAA
1 AATATATTTATTAATAAATATG-GTTGCGCCAAAAA
7614135 CTATCATGAT
Statistics
Matches: 91, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
76 73 0.80
77 18 0.20
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (77 bp):
AATATATTTATTAATAAATATGGTTGCGCCAAAAAATGTAATAGTTCACTAAAAAACAAATTGCA
ATATAAAATGTT
Found at i:7614293 original size:2 final size:2
Alignment explanation
Indices: 7614286--7614319 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7614276 TTCATTTTTC
7614286 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7614320 TTAAATCGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7614744 original size:102 final size:101
Alignment explanation
Indices: 7614544--7614757 Score: 225
Period size: 102 Copynumber: 2.1 Consensus size: 101
7614534 GTTTGAAACC
* * *
7614544 GTTTATATTATGAAAAAATAAGACAAAACAAGTTTATAAGTTTAACATTATAGGTTACACCTATT
1 GTTTATATTATGAAAAAATAAGACAAAACAAGTTTATAAATATAACATTATACGTTACACCTATT
** * ** * *
7614609 TTTAATTGTCAATTGTTTATGTTGTATGTTTAAAAT
66 GCTAATGGTCAACCGTTTATGTTATAAGTTTAAAAT
* * * * * *
7614645 ATTTTATATTATGCAAAAGTAAGACAAAACAAGTTTGTAAATATAACATTGTACG-TAGCGCCT-
1 -GTTTATATTATGAAAAAATAAGACAAAACAAGTTTATAAATATAACATTATACGTTA-CACCTA
* *
7614708 TTGCTAATGGTTAACCGTTTATGTTATAAGTATTAAACT
64 TTGCTAATGGTCAACCGTTTATGTTATAAGT-TTAAAAT
7614747 GTTTATATTAT
1 GTTTATATTAT
7614758 TAAATATAAT
Statistics
Matches: 91, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
101 35 0.38
102 56 0.62
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (101 bp):
GTTTATATTATGAAAAAATAAGACAAAACAAGTTTATAAATATAACATTATACGTTACACCTATT
GCTAATGGTCAACCGTTTATGTTATAAGTTTAAAAT
Found at i:7618162 original size:31 final size:31
Alignment explanation
Indices: 7618127--7618186 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
7618117 TACTAGTCAA
* *
7618127 GTTTGCGTTTAGATAATGCACAGTATGTTAG
1 GTTTGCATTTAGATAATGCACAGCATGTTAG
*
7618158 GTTTGCATTTAGATAATGCATAGCATGTT
1 GTTTGCATTTAGATAATGCACAGCATGTT
7618187 CAATCGTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (31 bp):
GTTTGCATTTAGATAATGCACAGCATGTTAG
Found at i:7621225 original size:20 final size:22
Alignment explanation
Indices: 7621179--7621226 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
7621169 GTGGGTATCA
*
7621179 ATACTATAGAAGGGAAGTATCG
1 ATACTATAGAAGGGAAGTACCG
* *
7621201 GTACTATAG-TGGG-AGTACCG
1 ATACTATAGAAGGGAAGTACCG
7621221 ATACTA
1 ATACTA
7621227 ATGCGTCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.50
21 3 0.14
22 8 0.36
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (22 bp):
ATACTATAGAAGGGAAGTACCG
Found at i:7621801 original size:23 final size:23
Alignment explanation
Indices: 7621775--7621854 Score: 119
Period size: 23 Copynumber: 3.5 Consensus size: 23
7621765 CTTTTAGGAT
*
7621775 AAAATTATGTGGTCCTTCGGGAC
1 AAAACTATGTGGTCCTTCGGGAC
7621798 AAAACCTATGTGGTCCTTCGGGAC
1 AAAA-CTATGTGGTCCTTCGGGAC
*
7621822 AAACCTATGTGGTCCTTCGGGAC
1 AAAACTATGTGGTCCTTCGGGAC
7621845 -AAA-TATGTGG
1 AAAACTATGTGG
7621855 CGCTTCAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
21 7 0.13
22 2 0.04
23 23 0.43
24 21 0.40
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (23 bp):
AAAACTATGTGGTCCTTCGGGAC
Found at i:7621807 original size:24 final size:24
Alignment explanation
Indices: 7621780--7621847 Score: 129
Period size: 23 Copynumber: 2.9 Consensus size: 24
7621770 AGGATAAAAT
7621780 TATGTGGTCCTTCGGGACAAAACC
1 TATGTGGTCCTTCGGGACAAAACC
7621804 TATGTGGTCCTTCGGGAC-AAACC
1 TATGTGGTCCTTCGGGACAAAACC
7621827 TATGTGGTCCTTCGGGACAAA
1 TATGTGGTCCTTCGGGACAAA
7621848 TATGTGGCGC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
23 23 0.53
24 20 0.47
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (24 bp):
TATGTGGTCCTTCGGGACAAAACC
Found at i:7629873 original size:24 final size:23
Alignment explanation
Indices: 7629831--7629895 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
7629821 GTCGATGGTT
* * *
7629831 CTATATGGTTCTTCTGGACAAAAC
1 CTATGTGGTCCTTCGGGAC-AAAC
* * *
7629855 TTTTGTGGTCCTTTGGGACAAAC
1 CTATGTGGTCCTTCGGGACAAAC
7629878 CTATGTGGTCCTTCGGGA
1 CTATGTGGTCCTTCGGGA
7629896 TAAATATGTG
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (23 bp):
CTATGTGGTCCTTCGGGACAAAC
Found at i:7629905 original size:21 final size:22
Alignment explanation
Indices: 7629831--7629906 Score: 64
Period size: 23 Copynumber: 3.4 Consensus size: 22
7629821 GTCGATGGTT
* * *
7629831 CTATATGGTTCTTCTGGACAAAA
1 CTATGTGGTCCTTCGGGAC-AAA
* *
7629854 CTTTTGTGGTCCTTTGGGACAAA
1 C-TATGTGGTCCTTCGGGACAAA
*
7629877 CCTATGTGGTCCTTCGGGATAAA
1 -CTATGTGGTCCTTCGGGACAAA
7629900 -TATGTGG
1 CTATGTGG
7629907 CACATCGGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
21 7 0.16
23 22 0.51
24 14 0.33
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (22 bp):
CTATGTGGTCCTTCGGGACAAA
Found at i:7633897 original size:21 final size:22
Alignment explanation
Indices: 7633853--7633906 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
7633843 GTATGAATAA
7633853 TATCGATACCATATGGAAGAGG
1 TATCGATACCATATGGAAGAGG
*
7633875 TATCGATACC-TATGTGGAG-GG
1 TATCGATACCATATG-GAAGAGG
*
7633896 TATCAATACCA
1 TATCGATACCA
7633907 GGGATTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (22 bp):
TATCGATACCATATGGAAGAGG
Found at i:7635982 original size:65 final size:64
Alignment explanation
Indices: 7635857--7635990 Score: 164
Period size: 65 Copynumber: 2.1 Consensus size: 64
7635847 ACCCCATTTC
* ** * *
7635857 GAATGCATTTAATGCACCGATGCACAACCATGCATCGATGTACTCTGGATTTTATTGAAACATA
1 GAATGCATTTAATACACCGATGCACAACCATGCATCGATACACTCTGAATTGTATTGAAACATA
* *
7635921 GAATGCATTTTATACACCGATGCATAGACCATGCATCGATACACTCCT-AACTTGT-TTGAAACA
1 GAATGCATTTAATACACCGATGCACA-ACCATGCATCGATACACT-CTGAA-TTGTATTGAAACA
7635984 TA
63 TA
7635986 GAATG
1 GAATG
7635991 TAATTAGTGT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
64 23 0.38
65 32 0.53
66 5 0.08
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
GAATGCATTTAATACACCGATGCACAACCATGCATCGATACACTCTGAATTGTATTGAAACATA
Found at i:7643824 original size:15 final size:16
Alignment explanation
Indices: 7643786--7643824 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
7643776 AACATTTTGA
7643786 ATGTTTTTGGATTTAT
1 ATGTTTTTGGATTTAT
7643802 ATGTTTTTGGATTGT-T
1 ATGTTTTTGGATT-TAT
7643818 ATGTTTT
1 ATGTTTT
7643825 AATTTGATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (16 bp):
ATGTTTTTGGATTTAT
Found at i:7644583 original size:45 final size:44
Alignment explanation
Indices: 7644534--7644634 Score: 107
Period size: 46 Copynumber: 2.2 Consensus size: 44
7644524 GCCATGCATT
*
7644534 GATGCACTCT-GATTTTATTGAAACATCGAATGCATTTTATGC-ACC
1 GATGCACTCTGGATTGT-TTGAAACATCGAATGCA-TTTA-GCGACC
* * *
7644579 GATGCACTTCTGGCTTGTTTGAAACATGGAATGTATTTAGCGTACC
1 GATGCAC-TCTGGATTGTTTGAAACATCGAATGCATTTAGCG-ACC
7644625 GATGCACTCT
1 GATGCACTCT
7644635 TAGTGTACCG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
44 2 0.04
45 14 0.29
46 28 0.58
47 4 0.08
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (44 bp):
GATGCACTCTGGATTGTTTGAAACATCGAATGCATTTAGCGACC
Found at i:7644721 original size:21 final size:21
Alignment explanation
Indices: 7644695--7644745 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
7644685 CATAGTATAC
7644695 CGATGCACCTTGGCTATGCAT
1 CGATGCACCTTGGCTATGCAT
7644716 CGATGCACCTTGGCTATGCAT
1 CGATGCACCTTGGCTATGCAT
7644737 CGATGCACC
1 CGATGCACC
7644746 ATACACTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.20, C:0.31, G:0.24, T:0.25
Consensus pattern (21 bp):
CGATGCACCTTGGCTATGCAT
Found at i:7647922 original size:18 final size:19
Alignment explanation
Indices: 7647899--7647946 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7647889 TTTTTAATAC
*
7647899 CGATACTAATA-AGGGTAT
1 CGATACTAATAGAGAGTAT
7647917 CGATACTACA-AGTAGAGTAT
1 CGATACTA-ATAG-AGAGTAT
7647937 CGATACTAAT
1 CGATACTAAT
7647947 CACTTTGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 9 0.36
19 2 0.08
20 14 0.56
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (19 bp):
CGATACTAATAGAGAGTAT
Found at i:7648989 original size:22 final size:22
Alignment explanation
Indices: 7648959--7649012 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
7648949 GTATGAACAA
7648959 TATCGATACCATATG-GAAGAGG
1 TATCGATACCATATGTGAAG-GG
* *
7648981 TATCAATACC-TATGTGGAGGG
1 TATCGATACCATATGTGAAGGG
7649002 TATCGATACCA
1 TATCGATACCA
7649013 GGGAACATCG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (22 bp):
TATCGATACCATATGTGAAGGG
Found at i:7653196 original size:22 final size:21
Alignment explanation
Indices: 7653169--7653222 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
7653159 ATATGAACAA
7653169 TATCGATACCATATG-GAAGAGG
1 TATCGATACCA-ATGTGAAG-GG
* *
7653191 TATCGATACTAATGTGGAGGG
1 TATCGATACCAATGTGAAGGG
7653212 TATCGATACCA
1 TATCGATACCA
7653223 GGGAACATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (21 bp):
TATCGATACCAATGTGAAGGG
Found at i:7653262 original size:15 final size:15
Alignment explanation
Indices: 7653244--7653283 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
7653234 AGCTAATTTT
7653244 GGTATCGGTAATAGA
1 GGTATCGGTAATAGA
7653259 GGTATCGGTAATAGA
1 GGTATCGGTAATAGA
7653274 GGTATCGGTA
1 GGTATCGGTA
7653284 CTGTTAGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.07, G:0.35, T:0.28
Consensus pattern (15 bp):
GGTATCGGTAATAGA
Found at i:7655440 original size:19 final size:20
Alignment explanation
Indices: 7655412--7655452 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
7655402 ATCAACTTAT
*
7655412 TTTTACTTTAATTACTTTTA
1 TTTTACTTTAATCACTTTTA
*
7655432 TTTTA-TTTAATCATTTTTA
1 TTTTACTTTAATCACTTTTA
7655451 TT
1 TT
7655453 ACTATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTACTTTAATCACTTTTA
Found at i:7660900 original size:13 final size:13
Alignment explanation
Indices: 7660884--7660908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7660874 ATCCATTAAA
7660884 TTTTTATTTTTAC
1 TTTTTATTTTTAC
7660897 TTTTTATTTTTA
1 TTTTTATTTTTA
7660909 TTCGATCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTTTAC
Found at i:7662371 original size:2 final size:2
Alignment explanation
Indices: 7662357--7662431 Score: 134
Period size: 2 Copynumber: 38.0 Consensus size: 2
7662347 AATAATAATC
*
7662357 AT AT AT A- AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7662398 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7662432 GTAAAACTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
1 1 0.01
2 70 0.99
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7662750 original size:2 final size:2
Alignment explanation
Indices: 7662739--7662772 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
7662729 ATTCTTCTTT
7662739 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7662773 TAAAAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7664588 original size:29 final size:30
Alignment explanation
Indices: 7664542--7664602 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
7664532 TTCTAGATTG
*
7664542 GATTTGGACCTTATCCTCATTTTGGA-CTA
1 GATTTGGACCTTACCCTCATTTTGGACCTA
7664571 GATTTGGACCTTACCCTCATTTTGGACCTA
1 GATTTGGACCTTACCCTCATTTTGGACCTA
7664601 GA
1 GA
7664603 ATAATTAAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 25 0.83
30 5 0.17
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (30 bp):
GATTTGGACCTTACCCTCATTTTGGACCTA
Found at i:7664656 original size:30 final size:28
Alignment explanation
Indices: 7664622--7664692 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 28
7664612 CAAATAAACA
7664622 AATAATAAAGTAATATAATAAATATAA-AAT
1 AATAATAAA-TAATATAAT-AATA-AATAAT
*
7664652 AATAA-ATAATATTATAATAATAAATAAT
1 AATAATA-AATAATATAATAATAAATAAT
7664680 -ATAATAAATAATA
1 AATAATAAATAATA
7664693 CATACATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
27 12 0.33
28 8 0.22
29 9 0.25
30 7 0.19
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (28 bp):
AATAATAAATAATATAATAATAAATAAT
Found at i:7664668 original size:26 final size:25
Alignment explanation
Indices: 7664621--7664692 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
7664611 ACAAATAAAC
7664621 AAATAATAAAGTAATATAATAA-ATAT
1 AAATAATAAA-TAATATAATAATA-AT
*
7664647 AAAATAATAAATAATATTATAATAAT
1 -AAATAATAAATAATATAATAATAAT
7664673 AAATAATATAATAA-ATAATA
1 AAATAATA-AATAATATAATA
7664693 CATACATACA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.32
26 17 0.41
27 11 0.27
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (25 bp):
AAATAATAAATAATATAATAATAAT
Found at i:7664670 original size:15 final size:15
Alignment explanation
Indices: 7664632--7664692 Score: 81
Period size: 15 Copynumber: 4.1 Consensus size: 15
7664622 AATAATAAAG
7664632 TAATATAATAAAT-A
1 TAATATAATAAATAA
*
7664646 TAAAATAATAAATAA
1 TAATATAATAAATAA
*
7664661 TATTATAAT-AATAAA
1 TAATATAATAAAT-AA
7664676 TAATATAATAAATAA
1 TAATATAATAAATAA
7664691 TA
1 TA
7664693 CATACATACA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
14 15 0.38
15 22 0.55
16 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAATATAATAAATAA
Found at i:7664670 original size:18 final size:19
Alignment explanation
Indices: 7664614--7664692 Score: 85
Period size: 18 Copynumber: 4.2 Consensus size: 19
7664604 TAATTAAACA
*
7664614 AATAAACAA-ATAATAAAGT
1 AATAAATAATATAATAAA-T
7664633 AATATAATAA-AT-ATAAAAT
1 AATA-AATAATATAAT-AAAT
*
7664652 AATAAATAATATTAT-AAT
1 AATAAATAATATAATAAAT
7664670 AATAAATAATATAATAAAT
1 AATAAATAATATAATAAAT
7664689 AATA
1 AATA
7664693 CATACATACA
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
18 22 0.42
19 20 0.38
20 11 0.21
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (19 bp):
AATAAATAATATAATAAAT
Found at i:7664778 original size:21 final size:21
Alignment explanation
Indices: 7664729--7664778 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
7664719 ATTATATAAC
*
7664729 ATATATTATATTTTCAAAACTT
1 ATATA-TATATTTTCAAAAATT
*
7664751 ATA-ATATGTTTTCAAAAATT
1 ATATATATATTTTCAAAAATT
7664771 ATATATAT
1 ATATATAT
7664779 TATATACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 5 0.20
22 3 0.12
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATATATATTTTCAAAAATT
Found at i:7664823 original size:30 final size:33
Alignment explanation
Indices: 7664779--7664853 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 33
7664769 TTATATATAT
* *
7664779 TATATACATTTTC-AAAAT-TGTTTT-AAAAAC
1 TATATATATATTCAAAAATATGTTTTCAAAAAC
7664809 TATATATATATTCAAAAATATGTTTTCAAAAAC
1 TATATATATATTCAAAAATATGTTTTCAAAAAC
7664842 TATATTATATAT
1 TATA-TATATAT
7664854 GTTTTCAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 11 0.28
31 5 0.13
32 6 0.15
33 10 0.26
34 7 0.18
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (33 bp):
TATATATATATTCAAAAATATGTTTTCAAAAAC
Found at i:7664861 original size:38 final size:37
Alignment explanation
Indices: 7664774--7664938 Score: 170
Period size: 38 Copynumber: 4.6 Consensus size: 37
7664764 AAAAATTATA
**
7664774 TATATTATATACATTTTC-AAAAT-TGTTTTAAAAAC
1 TATATTATATATGTTTTCAAAAATATGTTTTAAAAAC
7664809 TATA-TATATA----TTCAAAAATATGTTTTCAAAAAC
1 TATATTATATATGTTTTCAAAAATATGTTTT-AAAAAC
*
7664842 TATATTATATATGTTTTCAAAAATCCAT-TTTTTAAAAC
1 TATATTATATATGTTTTCAAAAAT--ATGTTTTAAAAAC
* * *
7664880 TATATTACATATGTTTTCAAAAACA-ATTTTAAAAAC
1 TATATTATATATGTTTTCAAAAATATGTTTTAAAAAC
7664916 TATA-TATTATATGTTTTCAAAAA
1 TATATTA-TATATGTTTTCAAAAA
7664939 ACCATACTAT
Statistics
Matches: 113, Mismatches: 5, Indels: 23
0.80 0.04 0.16
Matches are distributed among these distances:
30 3 0.03
31 5 0.04
32 6 0.05
33 10 0.09
34 12 0.11
35 6 0.05
36 29 0.26
38 36 0.32
39 4 0.04
40 2 0.02
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (37 bp):
TATATTATATATGTTTTCAAAAATATGTTTTAAAAAC
Found at i:7664937 original size:23 final size:23
Alignment explanation
Indices: 7664905--7665018 Score: 69
Period size: 23 Copynumber: 5.0 Consensus size: 23
7664895 TTCAAAAACA
*
7664905 ATTTTAAAAACTATATATTATAT
1 ATTTTCAAAACTATATATTATAT
* * * *
7664928 GTTTTCAAAA-AACCATACTATAT
1 ATTTTCAAAACTA-TATATTATAT
7664951 ATTTTCAAAAACTATATATATTATAT
1 ATTTTC-AAAAC--TATATATTATAT
* *
7664977 ATTTT-GAAATTAT-TA-TATAT
1 ATTTTCAAAACTATATATTATAT
* *
7664997 ATTATC-ATA-TATATATTATAT
1 ATTTTCAAAACTATATATTATAT
7665018 A
1 A
7665019 ATGTAATAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
19 3 0.04
20 13 0.19
21 8 0.11
22 4 0.06
23 21 0.30
24 7 0.10
26 13 0.19
27 1 0.01
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (23 bp):
ATTTTCAAAACTATATATTATAT
Found at i:7664951 original size:25 final size:23
Alignment explanation
Indices: 7664910--7664969 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
7664900 AAACAATTTT
*
7664910 AAAAACTATATATTATATGTTTTCA
1 AAAAACCATATATTATA--TTTTCA
7664935 AAAAACCATACTA-TATATTTTC-
1 AAAAACCATA-TATTATATTTTCA
*
7664957 AAAAACTATATAT
1 AAAAACCATATAT
7664970 ATTATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 2 0.06
22 9 0.29
23 5 0.16
25 13 0.42
26 2 0.06
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (23 bp):
AAAAACCATATATTATATTTTCA
Found at i:7664977 original size:7 final size:7
Alignment explanation
Indices: 7664965--7665018 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
7664955 TCAAAAACTA
7664965 TATATAT
1 TATATAT
7664972 TATATAT
1 TATATAT
* *
7664979 TTTGAAAT
1 TAT-ATAT
7664987 TAT-TA-
1 TATATAT
7664992 TATATAT
1 TATATAT
7664999 TATCATA-
1 TAT-ATAT
7665006 TATATAT
1 TATATAT
7665013 TATATA
1 TATATA
7665019 ATGTAATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
5 3 0.08
6 6 0.16
7 21 0.55
8 8 0.21
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (7 bp):
TATATAT
Found at i:7664999 original size:27 final size:26
Alignment explanation
Indices: 7664905--7665006 Score: 81
Period size: 23 Copynumber: 4.1 Consensus size: 26
7664895 TTCAAAAACA
7664905 ATTTT-AAAAAC--TATATATTATAT
1 ATTTTCAAAAACTATATATATTATAT
* ** *
7664928 GTTTTCAAAAA--A-CCATACTATAT
1 ATTTTCAAAAACTATATATATTATAT
7664951 ATTTTCAAAAACTATATATATTATAT
1 ATTTTCAAAAACTATATATATTATAT
* * *
7664977 ATTTTGAAATTATTATATATATTATCAT
1 ATTTTCAAA-AACTATATATATTAT-AT
7665005 AT
1 AT
7665007 ATATATTATA
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
23 22 0.36
24 5 0.08
25 1 0.02
26 16 0.26
27 13 0.21
28 4 0.07
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (26 bp):
ATTTTCAAAAACTATATATATTATAT
Found at i:7665018 original size:9 final size:9
Alignment explanation
Indices: 7664963--7665017 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
7664953 TTTCAAAAAC
7664963 TATATATAT
1 TATATATAT
*
7664972 TATATATTT
1 TATATATAT
*
7664981 TGAAAT-TAT
1 T-ATATATAT
7664990 TATATATAT
1 TATATATAT
7664999 TATCATATA-
1 TAT-ATATAT
7665008 TATATTATAT
1 TATA-TATAT
7665018 AATGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
8 4 0.11
9 25 0.68
10 8 0.22
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:7668542 original size:24 final size:24
Alignment explanation
Indices: 7668515--7668567 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
7668505 AGTATTTACT
7668515 TCTTCTAAAGATATGGCCAACAAA
1 TCTTCTAAAGATATGGCCAACAAA
*
7668539 TCTTCTAAAGATATGGCCATCAAA
1 TCTTCTAAAGATATGGCCAACAAA
7668563 TCTTC
1 TCTTC
7668568 ATCTGGGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (24 bp):
TCTTCTAAAGATATGGCCAACAAA
Found at i:7670289 original size:13 final size:13
Alignment explanation
Indices: 7670273--7670297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7670263 TATATATATG
7670273 AAAGAATAAATGA
1 AAAGAATAAATGA
7670286 AAAGAATAAATG
1 AAAGAATAAATG
7670298 TTTACCAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAGAATAAATGA
Found at i:7676410 original size:22 final size:22
Alignment explanation
Indices: 7676375--7676425 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
7676365 ATGGATAACC
7676375 TGCAATTTAAAAAACACATGTA
1 TGCAATTTAAAAAACACATGTA
* *
7676397 TGTAATTTAGAAAACACATGTA
1 TGCAATTTAAAAAACACATGTA
7676419 TGCAATT
1 TGCAATT
7676426 CAATCAATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (22 bp):
TGCAATTTAAAAAACACATGTA
Found at i:7685806 original size:18 final size:18
Alignment explanation
Indices: 7685785--7685819 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7685775 TGTATGCTTG
7685785 TTGTGTATT-GTTGCTTTT
1 TTGTGT-TTGGTTGCTTTT
7685803 TTGTGTTTGGTTGCTTT
1 TTGTGTTTGGTTGCTTT
7685820 GGTTGCTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.03, C:0.06, G:0.26, T:0.66
Consensus pattern (18 bp):
TTGTGTTTGGTTGCTTTT
Found at i:7686480 original size:12 final size:11
Alignment explanation
Indices: 7686446--7686505 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 11
7686436 TAATGAAGTA
7686446 ATAT-AATAA-
1 ATATAAATAAT
7686455 ATAT-AA-AAT
1 ATATAAATAAT
7686464 A-ATAAATAAT
1 ATATAAATAAT
7686474 ACTATAAATAAT
1 A-TATAAATAAT
7686486 ATAT-AAT-AT
1 ATATAAATAAT
7686495 A-ATAAATAAT
1 ATATAAATAAT
7686505 A
1 A
7686506 CGTACACTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
8 6 0.14
9 15 0.34
10 10 0.23
11 3 0.07
12 10 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (11 bp):
ATATAAATAAT
Found at i:7686499 original size:19 final size:19
Alignment explanation
Indices: 7686446--7686505 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
7686436 TAATGAAGTA
*
7686446 ATATAATAAATATAAAATAAT
1 ATATAATATA-AT-AAATAAT
*
7686467 AAATAATACT-ATAAATAAT
1 ATATAATA-TAATAAATAAT
7686486 ATATAATATAATAAATAAT
1 ATATAATATAATAAATAAT
7686505 A
1 A
7686506 CGTACACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.03
19 24 0.71
20 2 0.06
21 7 0.21
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATAATATAATAAATAAT
Found at i:7686633 original size:29 final size:32
Alignment explanation
Indices: 7686601--7686662 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
7686591 TATATACGTT
*
7686601 TTCAAAAA-CTGTTTT-AAAAACTATA-TATA
1 TTCAAAAATATGTTTTCAAAAACTATATTATA
7686630 TTCAAAAATATGTTTTCAAAAACTATATTATA
1 TTCAAAAATATGTTTTCAAAAACTATATTATA
7686662 T
1 T
7686663 ATGTTTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 8 0.28
30 6 0.21
31 10 0.34
32 5 0.17
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (32 bp):
TTCAAAAATATGTTTTCAAAAACTATATTATA
Found at i:7686664 original size:38 final size:38
Alignment explanation
Indices: 7686642--7686714 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
7686632 CAAAAATATG
* *
7686642 TTTTCAAAAACTATAT-TATATATGTTTTCAAAAAACCA
1 TTTTAAAAAACTATATAT-TATATATTTTCAAAAAACCA
7686680 TTTTAAAAAACTATATATTATATATTTTCAAAAAA
1 TTTTAAAAAACTATATATTATATATTTTCAAAAAA
7686715 TCATACTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
38 31 0.97
39 1 0.03
ACGTcount: A:0.48, C:0.10, G:0.01, T:0.41
Consensus pattern (38 bp):
TTTTAAAAAACTATATATTATATATTTTCAAAAAACCA
Found at i:7686694 original size:69 final size:70
Alignment explanation
Indices: 7686565--7686697 Score: 191
Period size: 71 Copynumber: 1.9 Consensus size: 70
7686555 TAAAAACTAT
* **
7686565 AATATGTTTTCAAAAATTATATATAATATATACGTTTTCAAAAACTGTTTTAAAAACTATATATA
1 AATATGTTTTCAAAAACTATATATAATATATA-GTTTTCAAAAACCATTTTAAAAACTATATATA
7686630 TTCAAA
65 TTCAAA
7686636 AATATGTTTTCAAAAACTATAT-T-ATATAT-GTTTTCAAAAAACCATTTTAAAAAACTATATAT
1 AATATGTTTTCAAAAACTATATATAATATATAGTTTTC-AAAAACCATTTT-AAAAACTATATAT
7686698 TATATATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
67 6 0.11
68 10 0.18
69 19 0.33
70 1 0.02
71 21 0.37
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.41
Consensus pattern (70 bp):
AATATGTTTTCAAAAACTATATATAATATATAGTTTTCAAAAACCATTTTAAAAACTATATATAT
TCAAA
Found at i:7686777 original size:28 final size:26
Alignment explanation
Indices: 7686679--7686757 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 26
7686669 TCAAAAAACC
*
7686679 ATTTTAAAAAAC--TATATATTATAT
1 ATTTTTAAAAACTATATATATTATAT
* * *
7686703 ATTTTCAAAAA--AT-CATACTATAT
1 ATTTTTAAAAACTATATATATTATAT
7686726 ATTTTTAAAAACTATATATATTATAT
1 ATTTTTAAAAACTATATATATTATAT
7686752 ATTTTT
1 ATTTTT
7686758 GAAATTATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
23 18 0.40
24 11 0.24
25 2 0.04
26 14 0.31
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTTTAAAAACTATATATATTATAT
Found at i:7687015 original size:59 final size:61
Alignment explanation
Indices: 7686952--7687074 Score: 153
Period size: 61 Copynumber: 2.0 Consensus size: 61
7686942 TACTTTATAA
**
7686952 CTTAATTATTAAAAGCT-TCT-ATT-GTTTTTAAATTTTATAAAATTTTCCTCATTTTCTAC
1 CTTAATTATT-AAAGCTCTCTGATTCGTTTTTAAATTTTATAAAATAATCCTCATTTTCTAC
* * * * *
7687011 CTTAATTATTAAAGGTCTCTGTTTCTTTTTTCAATTTTATAAAATAATCTTCATTTTCTAC
1 CTTAATTATTAAAGCTCTCTGATTCGTTTTTAAATTTTATAAAATAATCCTCATTTTCTAC
7687072 CTT
1 CTT
7687075 TATAATTGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
58 5 0.09
59 13 0.24
60 2 0.04
61 34 0.63
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (61 bp):
CTTAATTATTAAAGCTCTCTGATTCGTTTTTAAATTTTATAAAATAATCCTCATTTTCTAC
Found at i:7688193 original size:18 final size:18
Alignment explanation
Indices: 7688170--7688224 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
7688160 ATGATTATTG
*
7688170 TTTTTAAAGATCTCGAGT
1 TTTTTAAAGATTTCGAGT
7688188 TTTTTAAAGATTTCGAGT
1 TTTTTAAAGATTTCGAGT
7688206 TTTTTAAAGATTTCGAGT
1 TTTTTAAAGATTTCGAGT
7688224 T
1 T
7688225 CGAACGTCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.27, C:0.07, G:0.16, T:0.49
Consensus pattern (18 bp):
TTTTTAAAGATTTCGAGT
Found at i:7688817 original size:38 final size:38
Alignment explanation
Indices: 7688662--7689016 Score: 428
Period size: 36 Copynumber: 9.4 Consensus size: 38
7688652 TTTTATATAC
* * * *
7688662 ATATATATTATATAG-ATTAAAAATATTTTTAAAACAT
1 ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
*
7688699 ATATA-A-TATATAGTTTTGAAAACATGTTTGAAAACAT
1 ATATATATTATATAGTTTTTAAAACAT-TTTGAAAACAT
*
7688736 ATATATATAATATATAGTTTTGAAAACATGTTTGAAAACAT
1 ATATATAT--TATATAGTTTTTAAAACAT-TTTGAAAACAT
7688777 ATATATATTATATAGTTTTTAAAACATTTTG-AAA-AT
1 ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
* *
7688813 ATATATAATATATAG-TTTAAAAACATTTTG-AAA-AT
1 ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
7688848 ATATATATTATATAGTTTTTAAAACATTTTG-AAA-AT
1 ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
*
7688884 ATATA-A-TATATAGTTTTTTTAAATCATTTTGAAAACAT
1 ATATATATTATATAG--TTTTTAAAACATTTTGAAAACAT
*
7688922 GTATATATTATATAGTTTTTAAAACATTTTGAAAACAT
1 ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
*
7688960 ATATATATTATATAGTTTTTTAAAACATTTTAAAAAAAACAT
1 ATATATATTATATAG-TTTTTAAAACATTTT---GAAAACAT
7689002 ATATATATATATATA
1 ATATATAT-TATATA
7689017 TATATTATAT
Statistics
Matches: 286, Mismatches: 14, Indels: 30
0.87 0.04 0.09
Matches are distributed among these distances:
34 7 0.02
35 41 0.14
36 64 0.22
37 26 0.09
38 47 0.16
39 34 0.12
40 7 0.02
41 39 0.14
42 15 0.05
43 6 0.02
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (38 bp):
ATATATATTATATAGTTTTTAAAACATTTTGAAAACAT
Found at i:7689024 original size:54 final size:51
Alignment explanation
Indices: 7688958--7689065 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 51
7688948 TTTTGAAAAC
*
7688958 ATATATATATTATATAGTTTTTTAAAACATTTTAAAAAAAACATATATATATAT
1 ATATATATATTATATA-ATTTTTAAAACATTTT-AAAAAAACATATATA-ATAT
* **
7689012 ATATATATATTATATAATTTTTAAAACGTTTTTGAAAAACATATATAATAT
1 ATATATATATTATATAATTTTTAAAACATTTTAAAAAAACATATATAATAT
7689063 ATA
1 ATA
7689066 AGTTTTTAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
51 7 0.14
52 13 0.26
53 14 0.28
54 16 0.32
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (51 bp):
ATATATATATTATATAATTTTTAAAACATTTTAAAAAAACATATATAATAT
Found at i:7689032 original size:42 final size:42
Alignment explanation
Indices: 7688915--7689023 Score: 129
Period size: 38 Copynumber: 2.7 Consensus size: 42
7688905 AATCATTTTG
* * *
7688915 AAAACATGTATATATTATATAGT-TTTTAAAACATTTT---G
1 AAAACATATATATATTATATAGTATATTAAAACATTTTAAAA
* *
7688953 AAAACATATATATATTATATAGTTTTTTAAAACATTTTAAAA
1 AAAACATATATATATTATATAGTATATTAAAACATTTTAAAA
7688995 AAAACATATATATATATATATA-TATATTA
1 AAAACATATATATAT-TATATAGTATATTA
7689024 TATAATTTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 22 0.35
39 14 0.23
42 20 0.32
43 6 0.10
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.43
Consensus pattern (42 bp):
AAAACATATATATATTATATAGTATATTAAAACATTTTAAAA
Found at i:7689072 original size:39 final size:38
Alignment explanation
Indices: 7689014--7689102 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 38
7689004 ATATATATAT
* *
7689014 ATATATATTATATAATTTTTAAAAC-GTTTTTGAAAAAC
1 ATATATAATATATAATTTTTAAAACAATTTTTG-AAAAC
*
7689052 ATATATAATATATAAGTTTTTAAAACAATTTTTGAAAAT
1 ATATATAATATATAA-TTTTTAAAACAATTTTTGAAAAC
*
7689091 ATATATTATATA
1 ATATATAATATA
7689103 GCTTTGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
38 14 0.31
39 25 0.56
40 6 0.13
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (38 bp):
ATATATAATATATAATTTTTAAAACAATTTTTGAAAAC
Found at i:7689102 original size:37 final size:38
Alignment explanation
Indices: 7689014--7689156 Score: 138
Period size: 36 Copynumber: 3.9 Consensus size: 38
7689004 ATATATATAT
*
7689014 ATATATATTATATAA-TTTTTAAAAC-GTTTTTGAAAAAC
1 ATATATATTATATAAGTTTTTAAAACAATTTTTG--AAAC
*
7689052 ATATATAATATATAAGTTTTTAAAACAATTTTTGAAA-
1 ATATATATTATATAAGTTTTTAAAACAATTTTTGAAAC
* * ** *
7689089 ATATATATTATAT-AGCTTTGAAAATTATTTTTTAAAC
1 ATATATATTATATAAGTTTTTAAAACAATTTTTGAAAC
*
7689126 ATATATATTAT-TCAG-TTTTAAAA-AATGTTTT
1 ATATATATTATATAAGTTTTTAAAACAAT-TTTT
7689157 TACTATATTT
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
35 2 0.02
36 30 0.33
37 25 0.28
38 17 0.19
39 10 0.11
40 6 0.07
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (38 bp):
ATATATATTATATAAGTTTTTAAAACAATTTTTGAAAC
Found at i:7689157 original size:37 final size:36
Alignment explanation
Indices: 7689014--7689157 Score: 116
Period size: 37 Copynumber: 3.9 Consensus size: 36
7689004 ATATATATAT
* * **
7689014 ATATATATTATATAATTTTTAAAACGTTTTTGAAAAAC
1 ATATATATTATATAGTTTTAAAAAATTTTTTG--AAAC
*
7689052 ATATATAATATATAAGTTTTTAAAACAA-TTTTTGAAA-
1 ATATATATTATAT-AG-TTTTAAAA-AATTTTTTGAAAC
* *
7689089 ATATATATTATATAGCTTTGAAAATTATTTTTT-AAAC
1 ATATATATTATATAG-TTTTAAAA-AATTTTTTGAAAC
7689126 ATATATATTAT-TCAGTTTTAAAAAATGTTTTT
1 ATATATATTATAT-AGTTTTAAAAAAT-TTTTT
7689158 ACTATATTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
35 2 0.02
36 26 0.30
37 30 0.34
38 15 0.17
39 1 0.01
40 13 0.15
41 1 0.01
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (36 bp):
ATATATATTATATAGTTTTAAAAAATTTTTTGAAAC
Found at i:7690946 original size:3 final size:3
Alignment explanation
Indices: 7690938--7690980 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7690928 AAAATATTAA
7690938 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7690981 ATTAGTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7696757 original size:6 final size:6
Alignment explanation
Indices: 7696746--7696770 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7696736 ATTGATAAGT
7696746 TTTGCA TTTGCA TTTGCA TTTGCA T
1 TTTGCA TTTGCA TTTGCA TTTGCA T
7696771 CTTTGCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TTTGCA
Found at i:7704227 original size:16 final size:15
Alignment explanation
Indices: 7704191--7704252 Score: 58
Period size: 12 Copynumber: 4.1 Consensus size: 15
7704181 AAAAAGGAAC
*
7704191 AAATAAAAAGATAAAA
1 AAATGAAAAGA-AAAA
7704207 TAAATGTAAAAGAAAAA
1 -AAATG-AAAAGAAAAA
7704224 AAATG--AA-AAAAA
1 AAATGAAAAGAAAAA
7704236 AAATGAAAAGAGAAAA
1 AAATGAAAAGA-AAAA
7704252 A
1 A
7704253 GGAGGGCTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
12 10 0.26
13 2 0.05
14 2 0.05
15 1 0.03
16 10 0.26
17 8 0.21
18 6 0.15
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (15 bp):
AAATGAAAAGAAAAA
Found at i:7704233 original size:27 final size:27
Alignment explanation
Indices: 7704195--7704252 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
7704185 AGGAACAAAT
*
7704195 AAAAAG-ATAAAATAAATGTAAAAGAAA
1 AAAAAGAATAAAAAAAATG-AAAAGAAA
*
7704222 AAAAATGAA-AAAAAAAATGAAAAGAGA
1 AAAAA-GAATAAAAAAAATGAAAAGAAA
7704249 AAAA
1 AAAA
7704253 GGAGGGCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 16 0.59
28 10 0.37
29 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (27 bp):
AAAAAGAATAAAAAAAATGAAAAGAAA
Found at i:7705355 original size:20 final size:20
Alignment explanation
Indices: 7705300--7705356 Score: 64
Period size: 18 Copynumber: 3.0 Consensus size: 20
7705290 TCCAGTGGAG
*
7705300 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACA
* * *
7705320 CGTCCATAA-G-GAAGAAGA
1 AGTTCATAATGAGAAGAACA
7705338 AGTTCATAATGAGAAGAAC
1 AGTTCATAATGAGAAGAAC
7705357 TTGTTCAACT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
18 13 0.46
19 2 0.07
20 13 0.46
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAACA
Found at i:7705360 original size:90 final size:90
Alignment explanation
Indices: 7705190--7705456 Score: 331
Period size: 90 Copynumber: 2.9 Consensus size: 90
7705180 CACTTGTGGA
* * * *
7705190 ATCAACATTTTCAGTGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGAGAGAAGAAGTCCAT
1 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAAAG-GA-AGAAGAAGTTCAT
*
7705255 AATGAGAAGAACTTGTTCGATCT-CAC
64 AATGAGAAGAACTTGTTCGAACTACAC
*** *
7705281 ATCAGTGTTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCATAAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCA-AAGGAAGAAGAAGTTCATA
*
7705346 ATGAGAAGAACTTGTTC-AACTACGC
65 ATGAGAAGAACTTGTTCGAACTACAC
* * * *
7705371 ATCAACATTTTCAATGGAGAGTTCATAATGAGAAGAACTCATCTGAAAGAGGGAGAAGAAGTTCA
1 ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATC--CAA-AGGAAGAAGAAGTTCA
*
7705436 TAATGAGAAGAGCTTGTTCGA
63 TAATGAGAAGAACTTGTTCGA
7705457 CCTATCACTT
Statistics
Matches: 151, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
89 3 0.02
90 69 0.46
91 42 0.28
92 36 0.24
93 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (90 bp):
ATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAAAGGAAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCGAACTACAC
Found at i:7705362 original size:20 final size:19
Alignment explanation
Indices: 7705301--7705363 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
7705291 CCAGTGGAGA
7705301 GTTCATAATGAGAAGAACT
1 GTTCATAATGAGAAGAACT
* *
7705320 CGTCCATAAGGAAGAAGAA--
1 -GTTCATAATG-AGAAGAACT
7705339 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAAC-T
7705359 GTTCA
1 GTTCA
7705364 ACTACGCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 7 0.20
18 8 0.23
20 13 0.37
21 7 0.20
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (19 bp):
GTTCATAATGAGAAGAACT
Found at i:7705873 original size:3 final size:3
Alignment explanation
Indices: 7705865--7705889 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7705855 AAAATATTAA
7705865 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
7705890 ATTAGTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7706336 original size:19 final size:19
Alignment explanation
Indices: 7706312--7706387 Score: 134
Period size: 19 Copynumber: 3.9 Consensus size: 19
7706302 GTGGAGGTTC
7706312 AAAGCCATCGGGAAGCTTT
1 AAAGCCATCGGGAAGCTTT
7706331 AAAGCCATCGGGAAGCTTT
1 AAAGCCATCGGGAAGCTTT
7706350 AAAGCCATCGGGAAGCTTT
1 AAAGCCATCGGGAAGCTTT
7706369 AAAGCCAGTCGTGGAAGCT
1 AAAGCCA-TCG-GGAAGCT
7706388 CGAAAGTTGC
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
19 45 0.82
20 3 0.05
21 7 0.13
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.20
Consensus pattern (19 bp):
AAAGCCATCGGGAAGCTTT
Found at i:7707974 original size:14 final size:16
Alignment explanation
Indices: 7707939--7707976 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7707929 CCAATTTCTG
7707939 TCTTAAAAATGATTTT
1 TCTTAAAAATGATTTT
*
7707955 TCTTAAAACTG-TTTT
1 TCTTAAAAATGATTTT
7707970 T-TTAAAA
1 TCTTAAAA
7707977 GACGTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.29
15 5 0.24
16 10 0.48
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (16 bp):
TCTTAAAAATGATTTT
Found at i:7711313 original size:95 final size:94
Alignment explanation
Indices: 7711157--7711352 Score: 268
Period size: 95 Copynumber: 2.1 Consensus size: 94
7711147 AATAATATTA
* * * *
7711157 TATATATACAATAAAGCTTGAGTTATCCCTCTAGAGTAATTGGTTAAACGCCTCGGCTTTATGGA
1 TATATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCACGACTTTATGGA
* * *
7711222 TAATATTCAGCTAGCCTGATAAAGGTAAT
66 TAAGATTCAACTAACCTGATAAAGGTAAT
* *
7711251 TATACTATACAATAAAGCTTGAGCTGTCCCTCTA-AGGCAATTGGTTAAACGCCACGATTTTATG
1 TATA-TATACAATAAAGCTTGAGCTATCCCTCTAGA-GCAATTGGTTAAACGCCACGACTTTATG
**
7711315 GATAAGATTCAACTAACCTGATAAAGGTGTT
64 GATAAGATTCAACTAACCTGATAAAGGTAAT
7711346 TATATAT
1 TATATAT
7711353 TAAGTTGTCC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
94 8 0.09
95 81 0.91
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (94 bp):
TATATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCACGACTTTATGGA
TAAGATTCAACTAACCTGATAAAGGTAAT
Found at i:7712822 original size:164 final size:164
Alignment explanation
Indices: 7712511--7713430 Score: 967
Period size: 165 Copynumber: 5.6 Consensus size: 164
7712501 AAAAAGAAAA
* * * * * * *
7712511 CATTTGCAGTATAACTTAAGTCGAGAAGGGTTATCTGCCAACCAAAGACCTTTGAGTTTGACTAC
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CGACCAAAGACCTTCGAGTTCGACTAC
* * * *
7712576 GCTCAGCTCCAAGGCACATTATTTGCAGCATAGCTTAAGTCAAGAAGGGCTATCTACCAAAGACC
65 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACC
*
7712641 CTTGAGTTTGATTACACTCAGCTTCGAGGGCACAT
130 CTTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * *
7712676 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTCAACTATG
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCGACCAAAGACCTTCGAGTTCGACTACG
* * * *
7712741 CTCAACTCCAAGGCATATCATTTGCAACATAGCTTAATTCGAGAAGGGCTATCTGCCAAAAACCC
66 CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACCC
** *
7712806 CCGAGTTTGATTACACTCAGCTTCGAGGGCACAT
131 TTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * *
7712840 CATTTGCAGCATAACTCAAGGCTAGAAAGGTTATCTGCCAACCAAAGACTTTCAAGTTCGACTAC
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTG-CGACCAAAGACCTTCGAGTTCGACTAC
* * * *
7712905 GCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTAAGTCGAAAAGGGATATCTGCCAAAGACC
65 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACC
** *
7712970 CCCGAGTTCGATTACACTCAGCTTCGAGGGAACAT
130 CTTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * * * *
7713005 CATTTACAGCATAACTCAAGGCTGGAAGGGTTATCTGCCACTAAAAGACCCTCGAGTTCGATTAC
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCGAC-CAAAGACCTTCGAGTTCGACTAC
* * * * * * * * *
7713070 ACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATATGCCAATAAA
65 GCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCC-A-AAA
* * * * *
7713135 GACCTTTGAGTTCGATTACACTCAG-ATCAACGACACAT
127 -ACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * * *
7713173 CATTTGCTA-TATAGCTCAAGGCTAAAAGGGCTATCT--G-CCAAAGACCTTTGAGTTCGACTAC
1 CATTTGC-AGCATAACTCAAGGCTAGAAGGGTTATCTGCGACCAAAGACCTTCGAGTTCGACTAC
* * * * * *** *
7713234 GCTCAGCTCCAAGGCACATTATTTGTAGTATAACTCAAGGATAGAAGGGTTATCTGCCAATAAAG
65 GCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCC-A-AAA-
** * * *
7713299 ACATTTGAGTTCGATTACACTCAGC-TCAATGACACAT
127 ACCCTTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
* * * * *
7713336 TATTTGCGGTATAGCTCAAGGCTAGAAGGGCTATCT--G-CCAAAGACCTTCGAGTTCGACTACG
1 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCGACCAAAGACCTTCGAGTTCGACTACG
*
7713398 CTCAGCTCCAAGGCACATCATTTACAGCATAGC
66 CTCAGCTCCAAGGCACATCATTTGCAGCATAGC
7713431 CCAAGGTAAG
Statistics
Matches: 648, Mismatches: 98, Indels: 20
0.85 0.13 0.03
Matches are distributed among these distances:
163 170 0.26
164 174 0.27
165 202 0.31
166 41 0.06
167 1 0.00
168 38 0.06
169 22 0.03
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (164 bp):
CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCGACCAAAGACCTTCGAGTTCGACTACG
CTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAAACCC
TTGAGTTCGATTACACTCAGCTTCGAGGGCACAT
Found at i:7713216 original size:329 final size:325
Alignment explanation
Indices: 7712551--7713449 Score: 1014
Period size: 329 Copynumber: 2.7 Consensus size: 325
7712541 TTATCTGCCA
* *
7712551 ACCAAAGACCTTTGAGTTTGACTACGCTCAGCTCCAAGGCACATTATTTGCAGCATAGCTTAAGT
1 ACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGCAGTATAGCTTAAGT
* * * *
7712616 C-AAGAAGGGCTATCTACCAAAGACCCTTGAGTTTGATTACACTCAGCTTCGAGGGCACATCATT
66 CGAAGAAGGGATATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGAACATCATT
* * *
7712680 TACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAGACCTTCGAGTTCAACTATGCTCA
131 TACAGCATAACTCAAGGCTAGAAGGGTTATCTG-CA-CAAAGACCTTCGAGTTCGACTACGCTCA
* * * * ** * *
7712745 ACTCCAAGGCATATCATTTGCAACATAGCTTAATTCGAGAAGGGCTATCTGCCAAAAACCCCCGA
194 GCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATATGCCAAAAACCCCCGA
* * * * * *
7712810 GTTTGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAAGGTTATC
259 GTTCGATTACACTCAGCATCAACGACACATCATTTGCAGCATAACTCAAGGCTAGAAAGGCTATC
7712875 TG
324 TG
* *
7712877 CCAACCAAAGA-CTTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTT
1 ---ACCAAAGACCTTT-GAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGCAGTATAGCTT
**
7712941 AAGTCGAA-AAGGGATATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGAACAT
62 AAGTCGAAGAAGGGATATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGAACAT
* * *
7713005 CATTTACAGCATAACTCAAGGCTGGAAGGGTTATCTGCCACTAAAAGACCCTCGAGTTCGATTAC
127 CATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTG-CAC--AAAGACCTTCGAGTTCGACTAC
* * * * *
7713070 ACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATATGCCAATAAA
189 GCTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATATGCC-A-AAA
*** * *
7713135 GACCTTTGAGTTCGATTACACTCAG-ATCAACGACACATCATTTGCTA-TATAGCTCAAGGCTA-
251 -ACCCCCGAGTTCGATTACACTCAGCATCAACGACACATCATTTGC-AGCATAACTCAAGGCTAG
7713197 AAAGGGCTATCTG
314 AAA-GGCTATCTG
* * *
7713210 -CCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGTAGTATAACTCAAG-
1 ACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGCAGTATAGCTTAAGT
* ** **
7713273 -GATAGAAGGGTTATCTGCCAATAAAGACATTTGAGTTCGATTACACTCAGC-TC-AATGACACA
66 CGA-AGAAGGGATATCTGCC---AAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGA-ACA
* * * * * *
7713335 TTATTTGCGGTATAGCTCAAGGCTAGAAGGGCTATCTGC-CAAAGACCTTCGAGTTCGACTACGC
126 TCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGCACAAAGACCTTCGAGTTCGACTACGC
* *
7713399 TCAGCTCCAAGGCACATCATTTACAGCATAGCCCAAGG-TAAGAAGGGCTAT
191 TCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGCT-AGAAGGGCTAT
7713450 CTATCAATAA
Statistics
Matches: 483, Mismatches: 69, Indels: 39
0.82 0.12 0.07
Matches are distributed among these distances:
325 1 0.00
326 38 0.08
327 28 0.06
328 6 0.01
329 211 0.44
330 33 0.07
331 76 0.16
332 29 0.06
333 40 0.08
334 21 0.04
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (325 bp):
ACCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGCAGTATAGCTTAAGT
CGAAGAAGGGATATCTGCCAAAGACCCTTGAGTTCGATTACACTCAGCTTCGAGGGAACATCATT
TACAGCATAACTCAAGGCTAGAAGGGTTATCTGCACAAAGACCTTCGAGTTCGACTACGCTCAGC
TCCAAGGCACATCATTTGCAGCATAGCTCAAGGCTAGAAGGGCTATATGCCAAAAACCCCCGAGT
TCGATTACACTCAGCATCAACGACACATCATTTGCAGCATAACTCAAGGCTAGAAAGGCTATCTG
Found at i:7713258 original size:80 final size:80
Alignment explanation
Indices: 7712552--7713451 Score: 766
Period size: 80 Copynumber: 11.0 Consensus size: 80
7712542 TATCTGCCAA
* * * * * *
7712552 CCAAAGACCTTTGAGTTTGACTACGCTCAGCTCCAAGGCACATTATTTGCAGCATAGCTTAAGTC
1 CCAAAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGC
* *
7712617 AAGAAGGGCTATCTA
66 TAGAAGGGCTATCTG
* * * * * *
7712632 CCAAAGACCCTTGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGG
1 CCAAAGACCTTTGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTCAAGG
*
7712697 CTAGAAGGGTTATCTGTG
65 CTAGAAGGGCTATC--TG
* * * ** * * * * **
7712715 ACCAAAGACCTTCGAGTTCAACTATGCTCAACTCCAAGGCATATCATTTGCAACATAGCTTAATT
1 -CCAAAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGG
*
7712780 CGAGAAGGGCTATCTG
65 CTAGAAGGGCTATCTG
* *** * * * *
7712796 CCAAAAACCCCCGAGTTTGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTCAAGG
1 CCAAAGACCTTTGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTCAAGG
* *
7712861 CTAGAAAGGTTATCTG
65 CTAGAAGGGCTATCTG
* * * * *
7712877 CCAACCAAAGA-CTTTCAAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTT
1 ----CCAAAGACCTTT-GAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTC
* * * *
7712941 AAGTCGAAAAGGGATATCTG
61 AAGGCTAGAAGGGCTATCTG
*** * * * * *
7712961 CCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGGGAACATCATTTACAGCATAACTCAAGG
1 CCAAAGACCTTTGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTCAAGG
* *
7713026 CTGGAAGGGTTATCTG
65 CTAGAAGGGCTATCTG
* * * * *
7713042 CCACTAAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTGCAGCATAACTC
1 -C-C--AAAGACCTTTGAGTTCGATTACACTCAGC-TCCAAGGCACATCATTTGCAGCATAGCTC
* *
7713107 AAGGCTAGAAGGGTTATATG
61 AAGGCTAGAAGGGCTATCTG
* * *
7713127 CCAATAAAGACCTTTGAGTTCGATTACACTCAGAT-CAACGACACATCATTTGCTA-TATAGCTC
1 CC---AAAGACCTTTGAGTTCGATTACACTCAGCTCCAA-GGCACATCATTTGC-AGCATAGCTC
*
7713190 AAGGCTAAAAGGGCTATCTG
61 AAGGCTAGAAGGGCTATCTG
* * * * * * *
7713210 CCAAAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATTATTTGTAGTATAACTCAAGGA
1 CCAAAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGC
*
7713275 TAGAAGGGTTATCTG
66 TAGAAGGGCTATCTG
* * * * *
7713290 CCAATAAAGACATTTGAGTTCGATTACACTCAGCT-CAATGACACATTATTTGCGGTATAGCTCA
1 CC---AAAGACCTTTGAGTTCGATTACACTCAGCTCCAA-GGCACATCATTTGCAGCATAGCTCA
7713354 AGGCTAGAAGGGCTATCTG
62 AGGCTAGAAGGGCTATCTG
* * * * *
7713373 CCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAGCCCAAGG-
1 CCAAAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGC
7713437 TAAGAAGGGCTATCT
66 T-AGAAGGGCTATCT
7713452 ATCAATAAAA
Statistics
Matches: 658, Mismatches: 135, Indels: 54
0.78 0.16 0.06
Matches are distributed among these distances:
79 2 0.00
80 198 0.30
81 122 0.19
82 5 0.01
83 145 0.22
84 91 0.14
85 95 0.14
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (80 bp):
CCAAAGACCTTTGAGTTCGATTACACTCAGCTCCAAGGCACATCATTTGCAGCATAGCTCAAGGC
TAGAAGGGCTATCTG
Found at i:7713990 original size:2 final size:2
Alignment explanation
Indices: 7713983--7714023 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7713973 CATTATTATT
7713983 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7714024 TAGTTTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7714058 original size:36 final size:36
Alignment explanation
Indices: 7714010--7714524 Score: 433
Period size: 36 Copynumber: 13.9 Consensus size: 36
7714000 ATATATATAT
*
7714010 ATATATATATATATTAG-TTTAAAAACATTTTTAAAAC
1 ATATATA-ATATA-TAGTTTTTAAAACATTTTTAAAAC
* * *
7714047 ATATATAATATATAGTTTTGAAAACATGTTTGAATATAT
1 ATATATAATATATAGTTTTTAAAACAT-TTTTAA-A-AC
* * * *
7714086 ATATATATTATATAGTTTTTAAAACATTTTGAATAT
1 ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
* *
7714122 ATATATAATATATAGTTTTTAAAACA-TTTT-GAAT
1 ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
* * *
7714156 ATATATATTATATAGTTTTTAAAACATTTTGAAAAT
1 ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
* *
7714192 ATATATAATATATAGTTTTTAAAACATTTTGAAAAT
1 ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
* *
7714228 ATATATATTATATAGTTTTTAAAACA-TTTTGAAA-
1 ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
* * *
7714262 ATATATAATATTTAGTTTTTTTAAAGCATTTTGAAAAC
1 ATATATAATATATAG--TTTTTAAAACATTTTTAAAAC
*
7714300 ATATATATATTATATAGTTTTTAAAACATTTTGAAAAC
1 ATATATA-A-TATATAGTTTTTAAAACATTTTTAAAAC
7714338 ATATATATATATATTATATAGTTTTTTAAAACATTTTTAAAAAAC
1 ----ATATATA-A-TATATAG-TTTTTAAAACATTTTT--AAAAC
* *
7714383 ATATATATATATTATATAATTTTTAAAACGTTTTTGAAAAAC
1 --ATATATA-A-TATATAGTTTTTAAAACATTTTT--AAAAC
* *
7714425 ATATATATTATATAAG-TTTTAAAACATTTTTGAAA-
1 ATATATAATATAT-AGTTTTTAAAACATTTTTAAAAC
* * * * *
7714460 ATATAT-TTATATAGCTTTGAAAATTATTTTTTAAAC
1 ATATATAATATATAGTTTTTAAAA-CATTTTTAAAAC
7714496 ATA-AT-ATATATAG-TTTTAAAA-ATGTTTTA
1 ATATATAATATATAGTTTTTAAAACAT-TTTTA
7714525 TTATATTTAT
Statistics
Matches: 416, Mismatches: 38, Indels: 52
0.82 0.08 0.10
Matches are distributed among these distances:
32 2 0.00
33 6 0.01
34 60 0.14
35 39 0.09
36 121 0.29
37 18 0.04
38 53 0.13
39 28 0.07
40 13 0.03
42 38 0.09
43 33 0.08
45 5 0.01
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (36 bp):
ATATATAATATATAGTTTTTAAAACATTTTTAAAAC
Found at i:7714205 original size:72 final size:72
Alignment explanation
Indices: 7714006--7714517 Score: 515
Period size: 70 Copynumber: 6.9 Consensus size: 72
7713996 ATATATATAT
* * * *
7714006 ATATATATATATATATATTAG-TTTAAAAACATTTTTAAAACATATATAATATATAGTTTTGAAA
1 ATATATATATAT-TATA-TAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAA
7714070 ACATGTTTGAA
64 ACAT-TTTG-A
*
7714081 TATATATATATATTATATAGTTTTTAAAACATTTTGAATATATATATAATATATAGTTTTTAAAA
1 -ATATATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAA
7714146 CATTTTG-
65 CATTTTGA
7714153 A-ATATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAAC
1 ATATATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAAC
7714217 ATTTTGA
66 ATTTTGA
* *
7714224 AAATATATATATTATATAGTTTTTAAAACATTTTG-AAA-ATATATAATATTTAGTTTTTTTAAA
1 ATATATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAG--TTTTTAAA
*
7714287 GCATTTTGAAA
64 ACATTTTG--A
*
7714298 ACATATATATATTATATAGTTTTTAAAACATTTTGAAAACATATATATATATATTATATAGTTTT
1 ATATATATATATTATATAGTTTTTAAAACATTTTG--AA-A-ATATATATA-A-TATATAG-TTT
*
7714363 TTAAAACATTTTTAAAAAA
59 TTAAAACA-TTTT----GA
* * * *
7714382 CATATATATATATTATATAATTTTTAAAACGTTTTTGAAAAACATATATATTATATAAG-TTTTA
1 -ATATATATATATTATATAGTTTTTAAAAC-ATTTTG-AAAATATATATAATATAT-AGTTTTTA
7714446 AAACATTTTTGA
62 AAACA-TTTTGA
* * * ** * *
7714458 A-A-ATATAT-TTATATAGCTTTGAAAATTATTTTTTAAACATA-AT-ATATATAGTTTTAAAAA
1 ATATATATATATTATATAGTTTTTAAAA-CATTTTGAAAATATATATAATATATAGTTTTTAAAA
7714518 TGTTTTATTA
Statistics
Matches: 384, Mismatches: 27, Indels: 57
0.82 0.06 0.12
Matches are distributed among these distances:
68 2 0.01
69 12 0.03
70 84 0.22
71 12 0.03
72 66 0.17
73 6 0.02
74 43 0.11
75 47 0.12
76 13 0.03
77 1 0.00
78 1 0.00
79 1 0.00
80 22 0.06
81 17 0.04
82 12 0.03
83 8 0.02
84 2 0.01
85 30 0.08
86 5 0.01
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (72 bp):
ATATATATATATTATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAAC
ATTTTGA
Found at i:7714489 original size:35 final size:35
Alignment explanation
Indices: 7714421--7714518 Score: 94
Period size: 35 Copynumber: 2.8 Consensus size: 35
7714411 CGTTTTTGAA
*
7714421 AAACATATATATTATATAAGTTTTAAAA-CATTTTTG
1 AAACATATAT-TTATAT-AGTTTAAAAATCATTTTTG
* * *
7714457 AAA-ATATATTTATATAGCTTTGAAAATTATTTTTT
1 AAACATATATTTATATAG-TTTAAAAATCATTTTTG
*
7714492 AAACATA-ATATATATAGTTTTAAAAAT
1 AAACATATATTTATATAG-TTTAAAAAT
7714519 GTTTTATTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.04
34 13 0.25
35 32 0.60
36 6 0.11
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (35 bp):
AAACATATATTTATATAGTTTAAAAATCATTTTTG
Found at i:7714546 original size:19 final size:19
Alignment explanation
Indices: 7714522--7714578 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
7714512 TAAAAATGTT
7714522 TTATTATATTTATTTATTA
1 TTATTATATTTATTTATTA
*
7714541 TTATTAT-TATTATTTATTT
1 TTATTATAT-TTATTTATTA
* *
7714560 TTCTTTTATTTATTTATTA
1 TTATTATATTTATTTATTA
7714579 CTTCTTTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
18 1 0.03
19 30 0.94
20 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (19 bp):
TTATTATATTTATTTATTA
Found at i:7716479 original size:98 final size:99
Alignment explanation
Indices: 7716292--7716521 Score: 390
Period size: 98 Copynumber: 2.3 Consensus size: 99
7716282 AAGTTTTTGG
* * * *
7716292 TAATGTCTGAATTGATATTTTATCTCTTCAAAAGTTTATTAAAAAAATTCATAATTTTAAGTTCA
1 TAATGTCTAAATAGATATTTTATCTCTTCAAAAGTTTATTAAAAAAATTCACAATTTTAAGTACA
*
7716357 TCCAAAATAATAATATTTTCATTATTTTCAAAAA
66 TCAAAAATAATAATATTTTCATTATTTTCAAAAA
*
7716391 TAATGTCTAAATAGATATTTTATCTCTTCAAAAGTTTATT-AAAAAATTCACCATTTTAAGTACA
1 TAATGTCTAAATAGATATTTTATCTCTTCAAAAGTTTATTAAAAAAATTCACAATTTTAAGTACA
7716455 TCAAAAATAATAATATTTTCATTATTTTCAAAAA
66 TCAAAAATAATAATATTTTCATTATTTTCAAAAA
*
7716489 TAATGTCTAAATAGATATTTTATCTCTTAAAAA
1 TAATGTCTAAATAGATATTTTATCTCTTCAAAA
7716522 ATATTTTTGG
Statistics
Matches: 124, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 86 0.69
99 38 0.31
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (99 bp):
TAATGTCTAAATAGATATTTTATCTCTTCAAAAGTTTATTAAAAAAATTCACAATTTTAAGTACA
TCAAAAATAATAATATTTTCATTATTTTCAAAAA
Found at i:7717438 original size:45 final size:44
Alignment explanation
Indices: 7717389--7717696 Score: 204
Period size: 44 Copynumber: 7.0 Consensus size: 44
7717379 GGATTCTATT
* ***
7717389 TTTTTTTTAAATCTCATTTTTTACTTTTATAATTTAGACTTTTAA
1 TTTTTTTT-AATCTCATTTTTTACTTTTATAATTGAGACCCCTAA
* * * * *
7717434 TTTTTTTTCAATCTC-TCTTTCTACCTTCATAAATAATG-CCCCTAA
1 TTTTTTTT-AATCTCAT-TTTTTACTTTTATAATTGA-GACCCCTAA
* * *
7717479 --TATTTTAATCTTATTTTTTA-TCTTTATAATTGAGGCCCCTAA
1 TTTTTTTTAATCTCATTTTTTACT-TTTATAATTGAGACCCCTAA
*
7717521 TTTTTTTTCAATCTTATTTTTTACTTTTATAATTGAGACCCCTAA
1 TTTTTTTT-AATCTCATTTTTTACTTTTATAATTGAGACCCCTAA
* * * *
7717566 -TTTTTTTAATTTCACTTTTTTACCTTTATAATTGAGGCCCTTAA
1 TTTTTTTTAATCTCA-TTTTTTACTTTTATAATTGAGACCCCTAA
** * * * * * *
7717610 -TTCATTTAATTTAAATTTTCACCTTTACAATTGATG-CCCCTAA
1 TTTTTTTTAATCTCATTTTTTACTTTTATAATTGA-GACCCCTAA
* * *
7717653 TTTTTTTTAATCCTACA--TTTTACTTTTATGATTTAGACCTCTAA
1 TTTTTTTTAAT-CT-CATTTTTTACTTTTATAATTGAGACCCCTAA
7717697 CTTAATCATT
Statistics
Matches: 208, Mismatches: 40, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.00
42 25 0.12
43 35 0.17
44 78 0.38
45 66 0.32
46 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.53
Consensus pattern (44 bp):
TTTTTTTTAATCTCATTTTTTACTTTTATAATTGAGACCCCTAA
Found at i:7717525 original size:132 final size:130
Alignment explanation
Indices: 7717389--7717696 Score: 320
Period size: 132 Copynumber: 2.3 Consensus size: 130
7717379 GGATTCTATT
*** *
7717389 TTTTTTTTAAATCTCATTTTTTACTTTTATAATTTAGACTTTTAATTTTTTTTCAATCTCTC-TT
1 TTTTTTTT-AATCTCATTTTTTACTTTTATAATTTAGACCCCTAA-TTTTTTT-AATCTCACTTT
* * * * *
7717453 TCTACCTTCATAAATAATGCCCCTAA-TATTTTAATCTT-ATTTTTTATCTTTATAATTGAGGCC
63 TCTACCTTCATAAATAAGGCCCCTAATTA-TTTAAT-TTAAATTTTCACCTTTACAATTGAGGCC
7717516 CCTAA
126 CCTAA
* * * *
7717521 TTTTTTTTCAATCTTATTTTTTACTTTTATAATTGAGACCCCTAATTTTTTTAATTTCACTTTTT
1 TTTTTTTT-AATCTCATTTTTTACTTTTATAATTTAGACCCCTAATTTTTTTAATCTCACTTTTC
* * * * *
7717586 TACCTTTATAATTGAGGCCCTTAATTCATTTAATTTAAATTTTCACCTTTACAATTGATGCCCCT
65 TACCTTCATAAATAAGGCCCCTAATT-ATTTAATTTAAATTTTCACCTTTACAATTGAGGCCCCT
7717651 AA
129 AA
* *
7717653 TTTTTTTTAATCCTACA--TTTTACTTTTATGATTTAGACCTCTAA
1 TTTTTTTTAAT-CT-CATTTTTTACTTTTATAATTTAGACCCCTAA
7717697 CTTAATCATT
Statistics
Matches: 147, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
130 6 0.04
131 58 0.39
132 81 0.55
133 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.53
Consensus pattern (130 bp):
TTTTTTTTAATCTCATTTTTTACTTTTATAATTTAGACCCCTAATTTTTTTAATCTCACTTTTCT
ACCTTCATAAATAAGGCCCCTAATTATTTAATTTAAATTTTCACCTTTACAATTGAGGCCCCTAA
Found at i:7717611 original size:44 final size:42
Alignment explanation
Indices: 7717471--7717659 Score: 209
Period size: 44 Copynumber: 4.4 Consensus size: 42
7717461 CATAAATAAT
* *
7717471 GCCCCTAA-TATTTTAATCTTATTTTTTATCTTTATAATTGAG
1 GCCCCTAATTTTTTTAAT-TTATTTTTTACCTTTATAATTGAG
*
7717513 GCCCCTAATTTTTTTTCAATCTTATTTTTTACTTTTATAATTGAG
1 GCCCCTAA-TTTTTTT-AAT-TTATTTTTTACCTTTATAATTGAG
*
7717558 ACCCCTAATTTTTTTAATTTCACTTTTTTACCTTTATAATTGAG
1 GCCCCTAATTTTTTTAATTT-A-TTTTTTACCTTTATAATTGAG
* ** * * * *
7717602 GCCCTTAATTCATTTAATTTAAATTTTCACCTTTACAATTGAT
1 GCCCCTAATTTTTTTAATTT-ATTTTTTACCTTTATAATTGAG
7717645 GCCCCTAATTTTTTT
1 GCCCCTAATTTTTTT
7717660 TAATCCTACA
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
42 10 0.08
43 33 0.26
44 49 0.39
45 33 0.26
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (42 bp):
GCCCCTAATTTTTTTAATTTATTTTTTACCTTTATAATTGAG
Found at i:7720525 original size:3 final size:3
Alignment explanation
Indices: 7720517--7720585 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
7720507 CCATTAATGA
7720517 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7720565 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
7720586 AATAATTTAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7726455 original size:21 final size:21
Alignment explanation
Indices: 7726431--7726531 Score: 141
Period size: 21 Copynumber: 4.8 Consensus size: 21
7726421 CCCTTAAGGT
7726431 AAGGGATCGATCCTTTTGGTG
1 AAGGGATCGATCCTTTTGGTG
7726452 AAGGGATCGATCCTTTTGGTG
1 AAGGGATCGATCCTTTTGGTG
**
7726473 AAGGGATCGATCCTTTTCATCG
1 AAGGGATCGATCCTTTTGGT-G
*
7726495 -AGGGGTCGATCCTTTTGGTG
1 AAGGGATCGATCCTTTTGGTG
* *
7726515 AAAGGATCGATTCTTTT
1 AAGGGATCGATCCTTTT
7726532 TAAAGGGGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
20 1 0.01
21 68 0.97
22 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.35
Consensus pattern (21 bp):
AAGGGATCGATCCTTTTGGTG
Found at i:7726553 original size:63 final size:62
Alignment explanation
Indices: 7726432--7726551 Score: 170
Period size: 63 Copynumber: 1.9 Consensus size: 62
7726422 CCTTAAGGTA
* * *
7726432 AGGGATCGATCCTTTTGGTGAAGGGATCGATCCTTTTGGTGAAGGGATCGATCCTTTTCATCG
1 AGGGATCGATCCTTTTGGTGAAAGGATCGATCCTTTT-GTAAAGGGAACGATCCTTTTCATCG
* *
7726495 AGGGGTCGATCCTTTTGGTGAAAGGATCGATTCTTTT-TAAAGGGGAACGATCCTTTT
1 AGGGATCGATCCTTTTGGTGAAAGGATCGATCCTTTTGTAAA-GGGAACGATCCTTTT
7726552 TCTAGGGGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
61 3 0.06
62 14 0.27
63 34 0.67
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (62 bp):
AGGGATCGATCCTTTTGGTGAAAGGATCGATCCTTTTGTAAAGGGAACGATCCTTTTCATCG
Found at i:7726711 original size:11 final size:11
Alignment explanation
Indices: 7726697--7726721 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7726687 ACTTTGAATT
7726697 ATTTTTGACAA
1 ATTTTTGACAA
7726708 ATTTTTGACAA
1 ATTTTTGACAA
7726719 ATT
1 ATT
7726722 CAATTAAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (11 bp):
ATTTTTGACAA
Found at i:7731148 original size:28 final size:27
Alignment explanation
Indices: 7731087--7731148 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
7731077 TTATTGACTC
7731087 TTTTAT-TTAATAATAATATTTTTTAT
1 TTTTATATTAATAATAATATTTTTTAT
***
7731113 TAAAATATTAA-AATATATAATTTTTTAT
1 TTTTATATTAATAATA-AT-ATTTTTTAT
7731141 TTTTATAT
1 TTTTATAT
7731149 ATGAATTTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
26 7 0.26
27 6 0.22
28 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
TTTTATATTAATAATAATATTTTTTAT
Found at i:7732551 original size:20 final size:19
Alignment explanation
Indices: 7732513--7732573 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 19
7732503 AATAGAAAGG
7732513 GAGAAAA-AAATAAATAAATT
1 GAGAAAATAAA-AAA-AAATT
7732533 GAGAAAATAACAAAAAAATGTT
1 GAGAAAATAA-AAAAAAA--TT
*
7732555 AAGAAAAATAAAAAAAAAT
1 GAG-AAAATAAAAAAAAAT
7732574 AAAAATGAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
20 11 0.31
21 5 0.14
22 12 0.34
23 7 0.20
ACGTcount: A:0.72, C:0.02, G:0.10, T:0.16
Consensus pattern (19 bp):
GAGAAAATAAAAAAAAATT
Found at i:7733683 original size:11 final size:11
Alignment explanation
Indices: 7733667--7733693 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7733657 CATAAAGTAA
7733667 AAAAATAAAAT
1 AAAAATAAAAT
7733678 AAAAATAAAAT
1 AAAAATAAAAT
7733689 AAAAA
1 AAAAA
7733694 AATAATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:7733705 original size:14 final size:13
Alignment explanation
Indices: 7733658--7733698 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
7733648 AAGCCTGATC
*
7733658 ATAAAGTAAAAAA
1 ATAAAATAAAAAA
7733671 ATAAAAT--AAAA
1 ATAAAATAAAAAA
7733682 ATAAAATAAAAAA
1 ATAAAATAAAAAA
7733695 ATAA
1 ATAA
7733699 TTATAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 11 0.44
13 14 0.56
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (13 bp):
ATAAAATAAAAAA
Found at i:7733862 original size:18 final size:18
Alignment explanation
Indices: 7733815--7733855 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
7733805 TATATGCATG
*
7733815 CTATATAATGTAAATATA
1 CTATATAATATAAATATA
7733833 CTATATAATATAAATATA
1 CTATATAATATAAATATA
7733851 CTATA
1 CTATA
7733856 AGATATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (18 bp):
CTATATAATATAAATATA
Found at i:7734203 original size:44 final size:44
Alignment explanation
Indices: 7734137--7734263 Score: 157
Period size: 44 Copynumber: 2.9 Consensus size: 44
7734127 ATCTGGAAAA
* * ** *
7734137 TCTTGAGCACGATATCCCTCGTTGTGAAGTTAAAATC-ATGAATG
1 TCTTGAGCGCGATAACTTTCGTTGTGAAGTTGAAATCGATG-ATG
* *
7734181 TCTTGAGTGCGATAACTTTCGTTGTGTAGTTGAAATCGATGATG
1 TCTTGAGCGCGATAACTTTCGTTGTGAAGTTGAAATCGATGATG
* *
7734225 TCTTGAGCGCGATAATTTTTGTTGTGAAGTTGAAATCGA
1 TCTTGAGCGCGATAACTTTCGTTGTGAAGTTGAAATCGA
7734264 GCTCAAAGTA
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 68 0.96
45 3 0.04
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.36
Consensus pattern (44 bp):
TCTTGAGCGCGATAACTTTCGTTGTGAAGTTGAAATCGATGATG
Found at i:7745884 original size:12 final size:13
Alignment explanation
Indices: 7745867--7745895 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7745857 CTTAATTGCG
7745867 AAAATTAAAA-TT
1 AAAATTAAAATTT
7745879 AAAATTAAAATTT
1 AAAATTAAAATTT
7745892 AAAA
1 AAAA
7745896 ATTCAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:7747875 original size:28 final size:27
Alignment explanation
Indices: 7747812--7747868 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
7747802 TACAATAATC
*
7747812 AAACA-ACATACAAATTTTAATTTTCT
1 AAACAGACTTACAAATTTTAATTTTCT
*
7747838 AAACAGACTTACAAATTTTTAATTTTTT
1 AAACAGACTTACAAA-TTTTAATTTTCT
7747866 AAA
1 AAA
7747869 ATGACTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 5 0.19
27 8 0.30
28 14 0.52
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (27 bp):
AAACAGACTTACAAATTTTAATTTTCT
Found at i:7749149 original size:2 final size:2
Alignment explanation
Indices: 7749144--7749199 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
7749134 AATAAAAAAC
7749144 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7749186 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
7749200 CGGGGCCAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7753248 original size:37 final size:37
Alignment explanation
Indices: 7753198--7753270 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
7753188 TTGAGGATGT
* *
7753198 TTATAAATTAAAGTTGTTGATATTTCATGCTATTTTC
1 TTATAAATTAAAGTTGTTGAGATTTCATGATATTTTC
7753235 TTATAAATTAAAGTTGTTGAGATTTCATGATATTTT
1 TTATAAATTAAAGTTGTTGAGATTTCATGATATTTT
7753271 TATGAGCTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (37 bp):
TTATAAATTAAAGTTGTTGAGATTTCATGATATTTTC
Found at i:7760643 original size:24 final size:24
Alignment explanation
Indices: 7760613--7760664 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7760603 AAAACTACTT
*
7760613 TATAAGTTTCATTGTAATCAAGTA
1 TATAAGTTTCATTGTAATCAAATA
**
7760637 TATAAGTTTTTTTGTAATCAAATA
1 TATAAGTTTCATTGTAATCAAATA
7760661 TATA
1 TATA
7760665 TCTCTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (24 bp):
TATAAGTTTCATTGTAATCAAATA
Found at i:7764812 original size:26 final size:26
Alignment explanation
Indices: 7764776--7764826 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7764766 CTCATTTTTT
7764776 TCAATTTAATCCTAATAAAATCGTGC
1 TCAATTTAATCCTAATAAAATCGTGC
7764802 TCAATTTAATCCTAATAAAATCGTG
1 TCAATTTAATCCTAATAAAATCGTG
7764827 AGCACAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (26 bp):
TCAATTTAATCCTAATAAAATCGTGC
Found at i:7767462 original size:2 final size:2
Alignment explanation
Indices: 7767455--7767494 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7767445 TCTTGTCCCG
7767455 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7767495 GAGAGAGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7767499 original size:2 final size:2
Alignment explanation
Indices: 7767494--7767525 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7767484 ATATATATAT
7767494 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7767526 GCCAAATTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7769947 original size:2 final size:2
Alignment explanation
Indices: 7769940--7769992 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
7769930 AACTTATCCA
7769940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7769982 AT AT AT AT AT A
1 AT AT AT AT AT A
7769993 AGGAGTTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7770251 original size:44 final size:45
Alignment explanation
Indices: 7770201--7770288 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 45
7770191 CTTTGATTTT
* *
7770201 TCTCATCCAATGATCCTAAAAATGTGT-AAAAAAACTGGGTGTAC
1 TCTCATCCAATGATCCTAAAAATATGTAAAAAAAACTAGGTGTAC
7770245 TCTCATCCAATGATCCTAAAAATATGTAAAAAAAACTAGGTGTA
1 TCTCATCCAATGATCCTAAAAATATGTAAAAAAAACTAGGTGTA
7770289 AACGGATCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 26 0.63
45 15 0.37
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (45 bp):
TCTCATCCAATGATCCTAAAAATATGTAAAAAAAACTAGGTGTAC
Found at i:7783823 original size:342 final size:342
Alignment explanation
Indices: 7783184--7783874 Score: 1071
Period size: 342 Copynumber: 2.0 Consensus size: 342
7783174 AAGAAAGGAG
* * * * *
7783184 TCAACATCACTATTTCTAGACCCATAAGTACGCTTGACACTCTTGAGGCATATACTTCACGGACG
1 TCAAGATCACCATTTCTAAACCCATAAGTACGCTTGACACTCTAGAGGCATATACTTCACGGAAG
* *
7783249 TTTAACAACTCTAACCTGCGGGTCATAGGAATGACTAAACTTGACGATCTGATACCACTAAATAT
66 TTTAACAACTCTAACATGCGGGTCATAGGAACGACTAAACTTGACGATCTGATACCACTAAATAT
* *
7783314 AACATCCTAATTCCAATTGACCCAAAAGTCATCAAATTTTGATGTTACACAGAACCACGTGAGTG
131 AACATCCTAATTCCAATCGACCCAAAAGTAATCAAATTTTGATGTTACACAGAACCACGTGAGTG
* *
7783379 GCTAACCATTTAAAAATATATTTCATAAAGGTATCATCCATAAAATTTAATTGCCAGAAAAATAC
196 GCTAACCATTTAAAAAAATATTTCATAAAGGTATCATCCATAAAATTTAATTACCAGAAAAATAC
* * * * *
7783444 AAAATATAAGTGTTTAATACGAAGAAGTTCTTGACATAAGTTTCCAAAATATATCATTAATTTAA
261 AAAATATAAGTGTTTAATACGAAGAAGCTCCTGACATAAGTCTCCAAAAAATATCATTAATATAA
7783509 ATTAGAGAGTTTACGAC
326 ATTAGAGAGTTTACGAC
* *
7783526 TCAAGATCACCATTTCTAAACCCATAAGTATGCTTGACACTCTAGAGGCATATACTTTACGGAAG
1 TCAAGATCACCATTTCTAAACCCATAAGTACGCTTGACACTCTAGAGGCATATACTTCACGGAAG
* * * * *
7783591 TTTAACAACTCTAATATGTGGGTCGTAGGAACGACTAAACTTGAGGCTCTGATACCACTAAATAT
66 TTTAACAACTCTAACATGCGGGTCATAGGAACGACTAAACTTGACGATCTGATACCACTAAATAT
* * * *
7783656 AATATCCTAA-TCAGAATCGACCCAAATGTAATTAAATTTTGATGTTACACAGAACCACGTGAGT
131 AACATCCTAATTC-CAATCGACCCAAAAGTAATCAAATTTTGATGTTACACAGAACCACGTGAGT
*
7783720 GGCTAACCATTTAAAAAAATATTTCATATAGGTATCATCCATAAAATTTAATTACCAGAAAAATA
195 GGCTAACCATTTAAAAAAATATTTCATAAAGGTATCATCCATAAAATTTAATTACCAGAAAAATA
** *
7783785 TGAAATATAAGTGTTTAATAC-AGGGAAGCTCCTGACATAAGTCTCCAAAAAATATCATTAATAT
260 CAAAATATAAGTGTTTAATACGA-AGAAGCTCCTGACATAAGTCTCCAAAAAATATCATTAATAT
7783849 AAATTAGAGAGTTTACGAC
324 AAATTAGAGAGTTTACGAC
7783868 TCAAGAT
1 TCAAGAT
7783875 AAAAATAAGG
Statistics
Matches: 316, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
341 3 0.01
342 313 0.99
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (342 bp):
TCAAGATCACCATTTCTAAACCCATAAGTACGCTTGACACTCTAGAGGCATATACTTCACGGAAG
TTTAACAACTCTAACATGCGGGTCATAGGAACGACTAAACTTGACGATCTGATACCACTAAATAT
AACATCCTAATTCCAATCGACCCAAAAGTAATCAAATTTTGATGTTACACAGAACCACGTGAGTG
GCTAACCATTTAAAAAAATATTTCATAAAGGTATCATCCATAAAATTTAATTACCAGAAAAATAC
AAAATATAAGTGTTTAATACGAAGAAGCTCCTGACATAAGTCTCCAAAAAATATCATTAATATAA
ATTAGAGAGTTTACGAC
Found at i:7789028 original size:15 final size:15
Alignment explanation
Indices: 7789008--7789039 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7788998 GTGCATTTAA
7789008 TTGTGTAACTAGATG
1 TTGTGTAACTAGATG
*
7789023 TTGTGTAACTATATG
1 TTGTGTAACTAGATG
7789038 TT
1 TT
7789040 ATACTAGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (15 bp):
TTGTGTAACTAGATG
Found at i:7789152 original size:54 final size:54
Alignment explanation
Indices: 7789093--7789407 Score: 368
Period size: 54 Copynumber: 5.8 Consensus size: 54
7789083 TTACCAAATA
*
7789093 GGCACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAATCGTTTC
1 GGCACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
7789147 GGCACTAAGTGTGCAAATTATGGAATTCATCATATGTTAATGAATAACCGTTTC
1 GGCACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * * * * *
7789201 AGCACTAAGTTTGTAAAGT-ACGGAATTCATCATATATTGATAAATAACCGTTTT
1 GGCACTAAGTGTGCAAA-TCACGAAATTCATCATATGTTGATGAATAACCGTTTC
*
7789255 GACACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTC
1 GGCACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTC
** * * *
7789309 GAAACTAAGTGTGAAAAGT-ACGGAATTCATCATATGTTGATGAATAACCATTTC
1 GGCACTAAGTGTGCAAA-TCACGAAATTCATCATATGTTGATGAATAACCGTTTC
* * * *
7789363 GGCATTATA-TGTGCAAACCAC-AGAATTCATAATATGTTTATGAAT
1 GGCACTA-AGTGTGCAAATCACGA-AATTCATCATATGTTGATGAAT
7789408 GAACATATGG
Statistics
Matches: 222, Mismatches: 33, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
53 1 0.00
54 218 0.98
55 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (54 bp):
GGCACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTC
Found at i:7789391 original size:162 final size:162
Alignment explanation
Indices: 7789095--7789397 Score: 446
Period size: 162 Copynumber: 1.9 Consensus size: 162
7789085 ACCAAATAGG
* **
7789095 CACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAATCGTTTCGGCACTAAGTGTG
1 CACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTCGAAACTAAGTGTG
* * * * * * ** *
7789160 CAAATTATGGAATTCATCATATGTTAATGAATAACCGTTTCAGCACTAAGTTTGTAAAGTACGGA
66 AAAAGTACGGAATTCATCATATGTTAATGAATAACCATTTCAGCACTAAGTGTGCAAACCACAGA
*
7789225 ATTCATCATATATTGATAAATAACCGTTTTGA
131 ATTCATAATATATTGATAAATAACCGTTTTGA
7789257 CACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTCGAAACTAAGTGTG
1 CACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTCGAAACTAAGTGTG
* * *
7789322 AAAAGTACGGAATTCATCATATGTTGATGAATAACCATTTCGGCATTATA-TGTGCAAACCACAG
66 AAAAGTACGGAATTCATCATATGTTAATGAATAACCATTTCAGCACTA-AGTGTGCAAACCACAG
7789386 AATTCATAATAT
130 AATTCATAATAT
7789398 GTTTATGAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
162 123 0.99
163 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (162 bp):
CACTAAGTGTGCAAATCACGAAATTCATCATATGTTGATGAATAACCGTTTCGAAACTAAGTGTG
AAAAGTACGGAATTCATCATATGTTAATGAATAACCATTTCAGCACTAAGTGTGCAAACCACAGA
ATTCATAATATATTGATAAATAACCGTTTTGA
Done.