Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 62
Found at i:7792874 original size:55 final size:55
Alignment explanation
Indices: 7792789--7793003 Score: 322
Period size: 55 Copynumber: 3.9 Consensus size: 55
7792779 TGCAACCTGA
* *
7792789 GTTATTCATCAACTCATGATGAATTACGTGGATTTGCACACATAGTGCCTGTACG
1 GTTATTCATCAACTCATGATGAATTCCGTGGATTTACACACATAGTGCCTGTACG
* * *
7792844 GTTATTCATCAACTCATGATGAATTCCGTGGATTCATACACATAGTGCATGTACG
1 GTTATTCATCAACTCATGATGAATTCCGTGGATTTACACACATAGTGCCTGTACG
* * * * *
7792899 GTTATTCATCAACTCATGATGAATTCTGTTGATTTCCACACATAGTGCTTGTATG
1 GTTATTCATCAACTCATGATGAATTCCGTGGATTTACACACATAGTGCCTGTACG
* *
7792954 GTTATTCATCAACTCATGATGAATTTCATGGATTTACACACATAGTGCCT
1 GTTATTCATCAACTCATGATGAATTCCGTGGATTTACACACATAGTGCCT
7793004 ATTTGGTAAT
Statistics
Matches: 142, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 142 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (55 bp):
GTTATTCATCAACTCATGATGAATTCCGTGGATTTACACACATAGTGCCTGTACG
Found at i:7793291 original size:22 final size:21
Alignment explanation
Indices: 7793249--7793302 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
7793239 TGGCTCCTTA
7793249 GTATCGATACT-CATACCATG
1 GTATCGATACTACATACCATG
*
7793269 GTATCGATACTACCATACTATG
1 GTATCGATACTA-CATACCATG
7793291 GTA-CTGATACTA
1 GTATC-GATACTA
7793303 TGATATGGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 11 0.37
21 1 0.03
22 18 0.60
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (21 bp):
GTATCGATACTACATACCATG
Found at i:7797724 original size:21 final size:21
Alignment explanation
Indices: 7797700--7797773 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
7797690 ATTAATTTTG
7797700 TTTATACATCTTTTCATGCCT
1 TTTATACATCTTTTCATGCCT
* * * ** *
7797721 TTTATACACCATGATACATTTCA
1 TTTATACATC-T-TTTCATGCCT
*
7797744 TTTATGACATCCTTTCATGCCT
1 TTTAT-ACATCTTTTCATGCCT
7797766 TTTATACA
1 TTTATACA
7797774 CCATTATGCA
Statistics
Matches: 37, Mismatches: 13, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
21 12 0.32
22 11 0.30
23 10 0.27
24 4 0.11
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.46
Consensus pattern (21 bp):
TTTATACATCTTTTCATGCCT
Found at i:7798101 original size:55 final size:55
Alignment explanation
Indices: 7798032--7798468 Score: 680
Period size: 55 Copynumber: 7.9 Consensus size: 55
7798022 GTAGTACCTA
** *
7798032 TACGG-TAGTTCATCAACTCATGATGAATTTTGTGGATTTGCACACATAGTGCCTG
1 TACGGTTA-TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
* *
7798087 TACGATTATTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCATG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
* *
7798142 TACGGTTATTCATCAACTCATGATGAATTCCATGAATTTGCACACATAGTGTC-TG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTG-CATG
* * * *
7798197 TACGGTTATTCATAAACTCATGATAAATTTCATGGATTTGCACACATAGTGCATG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
*
7798252 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCCTG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
* * *
7798307 TATGATTATTCATCAACTCATGATGAATTCTGTGGATTTGCACACATAGTGCATG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
7798362 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
* * *
7798417 TATGGTTATTCATCAACTCATGATGAATTTCGTGGATTTGTACACATAGTGC
1 TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGC
7798469 CTATTTGGTA
Statistics
Matches: 353, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
54 1 0.00
55 349 0.99
56 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (55 bp):
TACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCATG
Found at i:7798861 original size:19 final size:22
Alignment explanation
Indices: 7798809--7798862 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
7798799 TACCCATACC
7798809 ATGGTATCGATACTATCATATT
1 ATGGTATCGATACTATCATATT
*
7798831 ATGGTACCGATACTAT-A-A-T
1 ATGGTATCGATACTATCATATT
*
7798850 ATGGTATGGATAC
1 ATGGTATCGATAC
7798863 CATTTTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 12 0.41
20 1 0.03
21 1 0.03
22 15 0.52
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (22 bp):
ATGGTATCGATACTATCATATT
Found at i:7801736 original size:9 final size:8
Alignment explanation
Indices: 7801724--7801799 Score: 61
Period size: 9 Copynumber: 9.4 Consensus size: 8
7801714 AATAGAATTA
7801724 ATAATAAT
1 ATAATAAT
7801732 GATAATAAT
1 -ATAATAAT
7801741 AGTAAT-AT
1 A-TAATAAT
7801749 ATAATAAT
1 ATAATAAT
7801757 AT-A-AAT
1 ATAATAAT
*
7801763 GTAATATAT
1 ATAATA-AT
7801772 ATAAT-AT
1 ATAATAAT
7801779 ATAATATACT
1 ATAATA-A-T
*
7801789 ATAATATT
1 ATAATAAT
7801797 ATA
1 ATA
7801800 TATACATTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
6 4 0.07
7 13 0.23
8 13 0.23
9 19 0.34
10 7 0.12
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.39
Consensus pattern (8 bp):
ATAATAAT
Found at i:7801737 original size:12 final size:11
Alignment explanation
Indices: 7801722--7801794 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
7801712 AAAATAGAAT
7801722 TAATAATAATGA
1 TAATAATAAT-A
*
7801734 TAATAATAGTAA
1 TAATAATAAT-A
7801746 TATATAATAATA
1 TA-ATAATAATA
*
7801758 TAA-ATGTAATA
1 TAATA-ATAATA
7801769 TATATAAT-ATA
1 TA-ATAATAATA
*
7801780 TAAT-ATACTA
1 TAATAATAATA
7801790 TAATA
1 TAATA
7801795 TTATATATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
9 2 0.04
10 9 0.18
11 13 0.27
12 17 0.35
13 8 0.16
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.38
Consensus pattern (11 bp):
TAATAATAATA
Found at i:7801754 original size:16 final size:15
Alignment explanation
Indices: 7801733--7801795 Score: 74
Period size: 16 Copynumber: 4.0 Consensus size: 15
7801723 AATAATAATG
7801733 ATAATAATAGTAATAT
1 ATAATAATA-TAATAT
7801749 ATAATAATATAA-AT
1 ATAATAATATAATAT
*
7801763 GTAATATATATAATAT
1 ATAATA-ATATAATAT
7801779 ATAATATACTATAATAT
1 ATAATA-A-TATAATAT
7801796 TATATATACA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
14 7 0.17
15 9 0.21
16 18 0.43
17 8 0.19
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (15 bp):
ATAATAATATAATAT
Found at i:7801795 original size:22 final size:21
Alignment explanation
Indices: 7801727--7801803 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 21
7801717 AGAATTAATA
7801727 ATAATGATAATAATAGTAATATAT
1 ATAAT-AT-ATAATA-TAATATAT
*
7801751 AATAATATA-AATGTAATATAT
1 -ATAATATATAATATAATATAT
*
7801772 ATAATATATAATATACTATAAT
1 ATAATATATAATATAATAT-AT
*
7801794 ATTATATATA
1 ATAATATATA
7801804 CATTTAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
20 8 0.17
21 16 0.35
22 14 0.30
23 1 0.02
24 2 0.04
25 5 0.11
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (21 bp):
ATAATATATAATATAATATAT
Found at i:7801901 original size:2 final size:2
Alignment explanation
Indices: 7801851--7801882 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7801841 TCTAAAGAAC
7801851 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7801883 AAATACGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7803776 original size:2 final size:2
Alignment explanation
Indices: 7803769--7803806 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7803759 ATTTATAATG
7803769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7803807 TACTTAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7804519 original size:27 final size:28
Alignment explanation
Indices: 7804449--7804519 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
7804439 TTGCACAATA
*
7804449 TGCACTCGAAAGTGTCTCGTAGATAAAT
1 TGCACTCGAAAGTGCCTCGTAGATAAAT
* * *
7804477 TGCACTCGAAAATGCCTCGTAGGTAATT
1 TGCACTCGAAAGTGCCTCGTAGATAAAT
*
7804505 TGCAC-CGTAAGTGCC
1 TGCACTCGAAAGTGCC
7804520 ATATAAAATG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 8 0.22
28 29 0.78
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (28 bp):
TGCACTCGAAAGTGCCTCGTAGATAAAT
Found at i:7804796 original size:61 final size:61
Alignment explanation
Indices: 7804707--7804849 Score: 193
Period size: 62 Copynumber: 2.4 Consensus size: 61
7804697 GTTCGGCAGT
* * * *
7804707 TCATACCCTAAATCATTCATAACCATTTAGTAAAATATCATAT-AAAATAT-ATTGGGCAAG
1 TCATACCCAAAATCATCCATAAACATTTAGTAAAATATCATATAAAAAT-TGAATGGGCAAG
* *
7804767 TCATACCCAAAATCATCCAATAAACATTTAGTAAAATATCATATAAAAATTGAATGGGTAAT
1 TCATACCCAAAATCATCC-ATAAACATTTAGTAAAATATCATATAAAAATTGAATGGGCAAG
7804829 TCATACCCAAAATCAT-CATAA
1 TCATACCCAAAATCATCCATAA
7804850 TATCATTTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.27
61 26 0.35
62 28 0.38
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (61 bp):
TCATACCCAAAATCATCCATAAACATTTAGTAAAATATCATATAAAAATTGAATGGGCAAG
Found at i:7804864 original size:62 final size:59
Alignment explanation
Indices: 7804701--7804849 Score: 192
Period size: 61 Copynumber: 2.5 Consensus size: 59
7804691 AAGTTCGTTC
* * * *
7804701 GGCAGTTCATACCCTAAATCATTCATAACCATTTAGTAAAATATCATATAAAATATATTG
1 GGCAATTCATACCCAAAATCA-TCATAAACATTTAGTAAAATATCATATAAAATATAATG
*
7804761 GGCAAGTCATACCCAAAATCATCCAATAAACATTTAGTAAAATATCATATAAAA-ATTGAATG
1 GGCAATTCATACCCAAAATCAT-C-ATAAACATTTAGTAAAATATCATATAAAATA-T-AATG
*
7804823 GGTAATTCATACCCAAAATCATCATAA
1 GGCAATTCATACCCAAAATCATCATAA
7804850 TATCATTTTA
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 24 0.31
61 30 0.38
62 23 0.29
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (59 bp):
GGCAATTCATACCCAAAATCATCATAAACATTTAGTAAAATATCATATAAAATATAATG
Found at i:7809536 original size:90 final size:89
Alignment explanation
Indices: 7809383--7809562 Score: 342
Period size: 90 Copynumber: 2.0 Consensus size: 89
7809373 TTGGAAGACA
7809383 AGCTATATAATATGTTACAAACTAAAATGTAGCATGATATAAGCCTACATTACTATACTTAGTTT
1 AGCTATATAATATGTTACAAACTAAAATGTAGCATGATATAAGCCTACATTACTATACTTAGTTT
7809448 ATTCTATACATATGATATGTTACAC
66 ATTCTATACATATGATATG-TACAC
*
7809473 AGCTATATAATATGTTACAAACTAAAATGTAGCATGTTATAAGCCTACATTACTATACTTAGTTT
1 AGCTATATAATATGTTACAAACTAAAATGTAGCATGATATAAGCCTACATTACTATACTTAGTTT
7809538 ATTCTATACATATGATATGTACAC
66 ATTCTATACATATGATATGTACAC
7809562 A
1 A
7809563 TTCATTTATA
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 6 0.07
90 83 0.93
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (89 bp):
AGCTATATAATATGTTACAAACTAAAATGTAGCATGATATAAGCCTACATTACTATACTTAGTTT
ATTCTATACATATGATATGTACAC
Found at i:7812210 original size:32 final size:32
Alignment explanation
Indices: 7812100--7812210 Score: 141
Period size: 32 Copynumber: 3.5 Consensus size: 32
7812090 GATACTCTTT
* * * * *
7812100 TGCATTATCCGAATACTAACATGATCATAATG
1 TGCATTATCTGAATGCAAACATGACCATACTG
* * * *
7812132 TGCATTACCTGAATGTAAACCTGACCATACTA
1 TGCATTATCTGAATGCAAACATGACCATACTG
7812164 TGCATTATCTGAATGCAAACATGACCATACTG
1 TGCATTATCTGAATGCAAACATGACCATACTG
7812196 TGCATTATCTGAATG
1 TGCATTATCTGAATG
7812211 TACCATAACT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 66 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (32 bp):
TGCATTATCTGAATGCAAACATGACCATACTG
Found at i:7813319 original size:20 final size:20
Alignment explanation
Indices: 7813294--7813338 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7813284 TTTGTAAACT
* *
7813294 AATTTTTTGGTATGGAGACC
1 AATTTTTCGATATGGAGACC
*
7813314 AATTTTTCGATATGGATACC
1 AATTTTTCGATATGGAGACC
7813334 AATTT
1 AATTT
7813339 GGTCTTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (20 bp):
AATTTTTCGATATGGAGACC
Found at i:7837015 original size:27 final size:26
Alignment explanation
Indices: 7836949--7837015 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
7836939 CATAACAACC
* *
7836949 TTTATTTTCTTGTCACATTTTGTTTA
1 TTTATTTTCTTTTTACATTTTGTTTA
** *
7836975 TTTATTTTAGTTTTACTTGTTTGTTT-
1 TTTATTTTCTTTTTACAT-TTTGTTTA
7837001 TCTTATTTTCTTTTT
1 T-TTATTTTCTTTTT
7837016 TATGTGTTTG
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 14 0.44
27 18 0.56
ACGTcount: A:0.12, C:0.09, G:0.07, T:0.72
Consensus pattern (26 bp):
TTTATTTTCTTTTTACATTTTGTTTA
Found at i:7845256 original size:17 final size:17
Alignment explanation
Indices: 7845234--7845267 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7845224 TCAACTAAAG
7845234 GGATGGACGCTTAACTA
1 GGATGGACGCTTAACTA
7845251 GGATGGACGCTTAACTA
1 GGATGGACGCTTAACTA
7845268 CGATAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (17 bp):
GGATGGACGCTTAACTA
Found at i:7847793 original size:67 final size:67
Alignment explanation
Indices: 7847685--7847818 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
7847675 CAACCACACG
*
7847685 GTGTATGTTCGAGGGAAGCTCCTGTGATTTTCCCCTTCAGTACTCAACATATACTTCAAGTTAGG
1 GTGTATGTTCGAGGGAAGCTCCTGCGATTTTCCCCTTCAGTACTCAACATATACTTCAAGTTAGG
7847750 GA
66 GA
7847752 GTGTATGTTCGAGGGAAGCTCCTGCGATTTTCCCCTTCAGTACTCAACATATACTTCAAGTTAGG
1 GTGTATGTTCGAGGGAAGCTCCTGCGATTTTCCCCTTCAGTACTCAACATATACTTCAAGTTAGG
7847817 GA
66 GA
7847819 AAGTGGAGGA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (67 bp):
GTGTATGTTCGAGGGAAGCTCCTGCGATTTTCCCCTTCAGTACTCAACATATACTTCAAGTTAGG
GA
Found at i:7856866 original size:2 final size:2
Alignment explanation
Indices: 7856859--7856887 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7856849 TTGATCAATA
7856859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7856888 ATGTTATGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7859998 original size:53 final size:53
Alignment explanation
Indices: 7859928--7860078 Score: 194
Period size: 53 Copynumber: 2.8 Consensus size: 53
7859918 TAGACGCTAA
* *
7859928 CTCTGCTTTGCTAGTATCTGGTATCACACAACATCAGATACTAGCCTCATTAG
1 CTCTGCTATGCTAGTATCTGGTATCACACAACATCAGAAACTAGCCTCATTAG
* ** * * * *
7859981 CTTTGCTATGCTAGTATCTGGTATCACACAGTATCAAAAACTAGACTTATTGG
1 CTCTGCTATGCTAGTATCTGGTATCACACAACATCAGAAACTAGCCTCATTAG
* * *
7860034 CTCTGCTATGCTAGTATATGGTATCACACAACATTAGACACTAGC
1 CTCTGCTATGCTAGTATCTGGTATCACACAACATCAGAAACTAGC
7860079 ATACTGAGAG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 81 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (53 bp):
CTCTGCTATGCTAGTATCTGGTATCACACAACATCAGAAACTAGCCTCATTAG
Found at i:7864222 original size:46 final size:46
Alignment explanation
Indices: 7864172--7865262 Score: 932
Period size: 46 Copynumber: 23.3 Consensus size: 46
7864162 AAACCAAATA
*
7864172 CATAAATAAAATGCATGAATGGATGCATTAAGGCATGAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * * *
7864218 CATAAATAAAATGCATGAAATGATGCATTAAGGCGTGAAAGGGTGT
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7864264 CATAAATAAAATGCATGAAAGGATACATTAAGGCATGAAAGGATGT
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
7864310 CATAAATAAAATGCATGAAATGATGCATTAAGGCATGAAATGATGT
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* ** *
7864356 CATAAATAAGATGCATGAAATAATGCATTAAGGCATGAAATGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7864402 CATAAATAAAATGCATAAAAGGATGCATTAAGGCATGAAAGGGTGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* **
7864448 CATAAATAGAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
*
7864494 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGGTGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7864540 CATAAATAAAATGCATGAAAGGATGCCATAAATAAAATGCATGAAATGATG-
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGC
* * * *
7864591 --T--AT-TAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAATGATG-
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGC
* * *
7864637 CAT---T--AAGGCATGAAAGGATGCAGTAAGGCATAAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * * *
7864678 CATAAATAAAATGCATGAAATGATGCATTAAGGTATGAAAGGGTGT
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7864724 CATAAATAAAATGCATGAAAGGATACATTAAGGCATGAAAGGGTGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7864770 CATAAATAAAATGCATGAAATGATGCATTAAGGCATGAAAGGGTGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
7864816 CATATATAAAATGCATGAAATGATGCATTAAGGCATGAAAGGGTG-
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
7864861 CAT---T--AAGGCATGAAAGGATGCCATAAATAAAATGCATGAAATGATG-
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGC
* * * *
7864907 CAT---T--AAGGCATGAAAGGGTGCCGTAAATAAAATGCATGAAAGGATG-
1 CATAAATAAAATGCATGAAAGGATG-C----AT-TAAGGCATGAAAGGATGC
* * * *
7864953 C---ACT--AAGGCATGAAAAGATGCCATAAATAAAATGCATGAAAGGATG-
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGC
*
7864999 CATTAAGGCATAAAATGATGCTATAAATAAAATGCATGAAATGATACATTAAGGCATGAAAGGAT
1 CA-TAA---AT-AAA--ATGC-----ATGAAA-G---G--ATG---CATTAAGGCATGAAAGGAT
7865064 GC
45 GC
* *
7865066 CATAAATAAAATGCATGAAATGG-TCCATTAAGGCTTGAAAGGATGC
1 CATAAATAAAATGCATGAAA-GGATGCATTAAGGCATGAAAGGATGC
* *
7865112 CATAAATAAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
7865158 CATAAATAAAATGCATGAAAGAATGCATTAATGCATGAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * * *
7865204 CATAAATAAAATGAAAGAAAGGATGCATTAAGGCATGATAGGATTC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
7865250 CATAAATAAAATG
1 CATAAATAAAATG
7865263 AAATTTAACG
Statistics
Matches: 901, Mismatches: 87, Indels: 114
0.82 0.08 0.10
Matches are distributed among these distances:
40 27 0.03
41 6 0.01
42 4 0.00
44 3 0.00
45 6 0.01
46 773 0.86
47 6 0.01
48 2 0.00
49 2 0.00
50 4 0.00
52 14 0.02
53 1 0.00
55 7 0.01
56 1 0.00
58 3 0.00
60 4 0.00
62 3 0.00
63 7 0.01
66 18 0.02
67 3 0.00
68 1 0.00
69 3 0.00
71 3 0.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (46 bp):
CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
Found at i:7864382 original size:138 final size:138
Alignment explanation
Indices: 7864172--7865262 Score: 1110
Period size: 138 Copynumber: 7.8 Consensus size: 138
7864162 AAACCAAATA
*
7864172 CATAAATAAAATGCATGAATGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
* * * *
7864237 ATGATGCATTAAGGCGTGAAAGGGTGTCATAAATAAAATGCATGAAAGGATACATTAAGGCATGA
66 ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGA
7864302 AAGGATGT
131 AAGGATGT
* * * *
7864310 CATAAATAAAATGCATGAAATGATGCATTAAGGCATGAAATGATGTCATAAATAAGATGCATGAA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
* * *
7864375 ATAATGCATTAAGGCATGAAATGATGCCATAAATAAAATGCATAAAAGGATGCATTAAGGCATGA
66 ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGA
* *
7864440 AAGGGTGC
131 AAGGATGT
* **
7864448 CATAAATAGAATGCATGAAAGGATGCATTAAGAAATGAAAGGATGCCATAAATAAAATGCATGAA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
* * *
7864513 AGGATGCATTAAGGCATGAAAGGGTGCCATAAATAAAATGCATGAAAGGATGCCATAAATAAAAT
66 ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATG-CAT---T--AAG
*
7864578 GCATGAAATGATGT
125 GCATGAAAGGATGT
* * * *
7864592 -AT---T--AAGGCATGAAAGGATGCCATAAATAAAATGCATGAAATGATG-CAT---T--AAGG
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGCCATAAATAAAATG
* * * *
7864645 CATGAAAGGATGCAGTAAGGCATAAAAGGATGCCATAAATAAAATGCATGAAATGATGCATTAAG
60 CATGAAATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAG
* *
7864710 GTATGAAAGGGTGT
125 GCATGAAAGGATGT
* *
7864724 CATAAATAAAATGCATGAAAGGATACATTAAGGCATGAAAGGGTGCCATAAATAAAATGCATGAA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
* * *
7864789 ATGATGCATTAAGGCATGAAAGGGTGCCATATATAAAATGCATGAAATGATGCATTAAGGCATGA
66 ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGA
*
7864854 AAGGGTG-
131 AAGGATGT
* * *
7864861 CAT---T--AAGGCATGAAAGGATGCCATAAATAAAATGCATGAAATGATG-CATTAAGGCATGA
1 CATAAATAAAATGCATGAAAGGATG-CAT---T--AAGGCATGAAAGGATGCCA-TAA---AT-A
* * * *
7864920 AAGGGTGC-CGTAAATAAAATGCATGAAAGG-ATGCACTAAGGCATGAAAAGATGCCATAAATAA
55 AA--ATGCATG-AAAT--GATGCAT-TAAGGCATG-A--AAGG-ATG--------CCATAAATAA
* *
7864983 AATGCATGAAAGGATGCATTAAGGCATAAAATGATG-
102 AATGCATGAAAGGATGCATTAAGGCATGAAAGGATGT
* *
7865019 CTATAAATAAAATGCATGAAATGATACATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGA
1 C-ATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGA
* * * *
7865084 AATGGTCCATTAAGGCTTGAAAGGATGCCATAAATAAAATGCATGAAATGATGCATTAAGGCATG
65 AATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATG
*
7865149 AAAGGATGA
130 AAAGGATGT
* * * *
7865158 CATAAATAAAATGCATGAAAGAATGCATTAATGCATGAAAGGATGCCATAAATAAAATGAAAGAA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
* * *
7865223 AGGATGCATTAAGGCATGATAGGATTCCATAAATAAAATG
66 ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATG
7865263 AAATTTAACG
Statistics
Matches: 792, Mismatches: 98, Indels: 126
0.78 0.10 0.12
Matches are distributed among these distances:
132 40 0.05
133 8 0.01
134 3 0.00
136 3 0.00
137 11 0.01
138 541 0.68
139 7 0.01
140 2 0.00
141 2 0.00
142 5 0.01
143 6 0.01
144 32 0.04
146 12 0.02
147 9 0.01
149 9 0.01
150 8 0.01
152 7 0.01
153 1 0.00
154 3 0.00
155 2 0.00
158 59 0.07
159 4 0.01
160 1 0.00
162 1 0.00
163 3 0.00
164 13 0.02
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (138 bp):
CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAA
ATGATGCATTAAGGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGCATGA
AAGGATGT
Found at i:7865192 original size:20 final size:20
Alignment explanation
Indices: 7864181--7865203 Score: 322
Period size: 20 Copynumber: 44.9 Consensus size: 20
7864171 ACATAAATAA
*
7864181 AATGCATGAATGGATGCATT
1 AATGCATGAAAGGATGCATT
*
7864201 AAGGCATGAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864225 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* * *
7864247 AAGGCGTGAAAGGGTGTCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864271 AAAATGCATGAAAGGATACATT
1 --AATGCATGAAAGGATGCATT
*
7864293 AAGGCATGAAAGGATGTCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864317 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864339 AAGGCATGAAATGATGTCATAAAT
1 AATGCATGAAAGGATG-CAT---T
**
7864363 AAGATGCATGAAATAATGCATT
1 -A-ATGCATGAAAGGATGCATT
* *
7864385 AAGGCATGAAATGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864409 AAAATGCATAAAAGGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864431 AAGGCATGAAAGGGTGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
7864455 AGAATGCATGAAAGGATGCATT
1 --AATGCATGAAAGGATGCATT
*
7864477 AA-GAAATGAAAGGATGCCATAAAT
1 AATG-CATGAAAGGATG-CAT---T
7864501 AAAATGCATGAAAGGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864523 AAGGCATGAAAGGGTGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
7864547 AAAATGCATGAAAGGATGCCATAAAT
1 --AATGCATGAAAGGATG-CAT---T
* *
7864573 AAAATGCATGAAATGATGTATT
1 --AATGCATGAAAGGATGCATT
*
7864595 AAGGCATGAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864619 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864641 AAGGCATGAAAGGATGCAGT
1 AATGCATGAAAGGATGCATT
* *
7864661 AAGGCATAAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864685 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* * *
7864707 AAGGTATGAAAGGGTGTCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864731 AAAATGCATGAAAGGATACATT
1 --AATGCATGAAAGGATGCATT
* *
7864753 AAGGCATGAAAGGGTGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864777 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864799 AAGGCATGAAAGGGTGCCATATAT
1 AATGCATGAAAGGATG-C--AT-T
*
7864823 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* *
7864845 AAGGCATGAAAGGGTGCATT
1 AATGCATGAAAGGATGCATT
*
7864865 AAGGCATGAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7864889 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
* * *
7864911 AAGGCATGAAAGGGTGCCGTAAATAA
1 AATGCATGAAAGGATG-C----AT-T
*
7864937 AATGCATGAAAGGATGCACT
1 AATGCATGAAAGGATGCATT
* *
7864957 AAGGCATGAAAAGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
7864981 AAAATGCATGAAAGGATGCATT
1 --AATGCATGAAAGGATGCATT
* * *
7865003 AAGGCATAAAATGATGCTATAAAT
1 AATGCATGAAAGGATGC-AT---T
* *
7865027 AAAATGCATGAAATGATACATT
1 --AATGCATGAAAGGATGCATT
*
7865049 AAGGCATGAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7865073 AAAATGCATGAAATGG-TCCATT
1 --AATGCATGAAA-GGATGCATT
* *
7865095 AAGGCTTGAAAGGATGCCATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7865119 AAAATGCATGAAATGATGCATT
1 --AATGCATGAAAGGATGCATT
*
7865141 AAGGCATGAAAGGATGACATAAAT
1 AATGCATGAAAGGATG-CAT---T
*
7865165 AAAATGCATGAAAGAATGCATT
1 --AATGCATGAAAGGATGCATT
7865187 AATGCATGAAAGGATGC
1 AATGCATGAAAGGATGC
7865204 CATAAATAAA
Statistics
Matches: 768, Mismatches: 111, Indels: 248
0.68 0.10 0.22
Matches are distributed among these distances:
19 3 0.00
20 318 0.41
21 54 0.07
22 19 0.02
23 4 0.01
24 19 0.02
25 57 0.07
26 291 0.38
27 3 0.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (20 bp):
AATGCATGAAAGGATGCATT
Found at i:7869503 original size:20 final size:20
Alignment explanation
Indices: 7869479--7869519 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
7869469 TTTAAATTTT
*
7869479 TTTTTTCTTTTAAAAATAATA
1 TTTTTACTTTTAAAAA-AATA
*
7869500 TTTTTATTTTTAAAAAAATA
1 TTTTTACTTTTAAAAAAATA
7869520 AATAAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTACTTTTAAAAAAATA
Found at i:7871988 original size:17 final size:18
Alignment explanation
Indices: 7871966--7872004 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
7871956 TACTTTACCG
7871966 TATTATTTA-TATTATAA
1 TATTATTTATTATTATAA
7871983 TATTATTTATTATTATAA
1 TATTATTTATTATTATAA
7872001 -ATTA
1 TATTA
7872005 AATGTGTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTATTTATTATTATAA
Found at i:7873773 original size:21 final size:21
Alignment explanation
Indices: 7873722--7873774 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
7873712 ATTATTACTA
*
7873722 TCGCAATACGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
7873743 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
7873764 TCGCAATGCGA
1 TCGCAATGCGA
7873775 ATAAGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:7873789 original size:20 final size:21
Alignment explanation
Indices: 7873764--7873815 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
7873754 TTTTCCCAAT
*
7873764 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
7873784 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
7873805 TCGCAATGCGA
1 TCGCAATGCGA
7873816 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:7873833 original size:20 final size:20
Alignment explanation
Indices: 7873804--7873998 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
7873794 AATTTGGAAA
*
7873804 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7873824 ATCTCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
7873844 ATCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
7873864 ATCGCAACGCAATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
7873885 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
7873905 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7873925 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
7873945 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * *
7873965 TTCGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
7873985 ATCGCAACGAGATA
1 ATCGCAACGCGATA
7873999 ATACAGAATC
Statistics
Matches: 156, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
19 2 0.01
20 138 0.88
21 14 0.09
22 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:7873869 original size:81 final size:82
Alignment explanation
Indices: 7873801--7873956 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 82
7873791 GCGAATTTGG
* * *
7873801 AAAATCGCAATGCGATACTGACTATCTCAATGCGATACTGACTATCGCAACACGATACTGACTAT
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACACGATACTGACTAT
7873866 CGCAACGC-AATAATAC
66 CGCAACGCGAATAATAC
* * * * *
7873882 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATACTGACTTTCGCAACGCGATTCTGACTTT
1 AAAATCGCAACGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACACGATACTGACTAT
7873947 CGCAACGCGA
66 CGCAACGCGA
7873957 TTCTGACTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (82 bp):
AAAATCGCAACGCGATACTGACTATCGCAACGCGATACTGACTATCGCAACACGATACTGACTAT
CGCAACGCGAATAATAC
Found at i:7874786 original size:22 final size:23
Alignment explanation
Indices: 7874739--7874786 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
7874729 AGTATTCGAA
*
7874739 TTGATCTTGGTCAATACCGGACT
1 TTGATATTGGTCAATACCGGACT
*
7874762 TTGATATTGGTCAATA-CGGATT
1 TTGATATTGGTCAATACCGGACT
7874784 TTG
1 TTG
7874787 TGATTTTCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.35
23 15 0.65
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (23 bp):
TTGATATTGGTCAATACCGGACT
Found at i:7877052 original size:19 final size:20
Alignment explanation
Indices: 7877010--7877064 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
7877000 CAATCATCTT
*
7877010 AATGTCTATCGCAACGCGGA
1 AATGACTATCGCAACGCGGA
*
7877030 AATGACTATCGCAATGC-GA
1 AATGACTATCGCAACGCGGA
**
7877049 AATGAAAATCGCAACG
1 AATGACTATCGCAACG
7877065 AGAGAATCGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
AATGACTATCGCAACGCGGA
Found at i:7877079 original size:33 final size:33
Alignment explanation
Indices: 7877037--7877163 Score: 200
Period size: 33 Copynumber: 3.8 Consensus size: 33
7877027 GGAAATGACT
7877037 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* * *
7877070 ATCGCAATGCAAAATGAAAATCGCAATGAGATA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
7877103 ATCGCAACGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
7877136 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
7877164 CGAATTTAGT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 85 1.00
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:7877129 original size:19 final size:18
Alignment explanation
Indices: 7877017--7877167 Score: 83
Period size: 19 Copynumber: 8.7 Consensus size: 18
7877007 CTTAATGTCT
**
7877017 ATCGCAACGCGGAAATGACT
1 ATCGCAA-GC-GAAATGAAA
7877037 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
7877056 ATCGCAA-CG--A-GAGA
1 ATCGCAAGCGAAATGAAA
*
7877070 ATCGCAATGCAAAATGAAA
1 ATCGCAA-GCGAAATGAAA
* *
7877089 ATCGCAA-TG--A-GATA
1 ATCGCAAGCGAAATGAAA
7877103 ATCGCAACGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
**
7877122 ATCGCAA-CG--A-GGGA
1 ATCGCAAGCGAAATGAAA
7877136 ATCGCAAAGCGAAATGAAA
1 ATCGC-AAGCGAAATGAAA
7877155 ATCGCAACGCGAA
1 ATCGCAA-GCGAA
7877168 TTTAGTTTCG
Statistics
Matches: 100, Mismatches: 15, Indels: 33
0.68 0.10 0.22
Matches are distributed among these distances:
14 27 0.27
15 5 0.05
16 4 0.04
17 4 0.04
18 5 0.05
19 46 0.46
20 9 0.09
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.13
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:7877194 original size:18 final size:18
Alignment explanation
Indices: 7877173--7877269 Score: 77
Period size: 18 Copynumber: 5.8 Consensus size: 18
7877163 GCGAATTTAG
*
7877173 TTTCGTGTTGCGATTTCA
1 TTTCGCGTTGCGATTTCA
7877191 TTTCGCGTTGCGA-TT-A
1 TTTCGCGTTGCGATTTCA
*
7877207 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGA-TTTCA
7877224 -TTCGCGTTGCGA-TTC-
1 TTTCGCGTTGCGATTTCA
*
7877239 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGA-TTTCA
*
7877256 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
7877270 AGTCATTTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
14 20 0.31
16 9 0.14
17 3 0.05
18 23 0.36
19 9 0.14
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.45
Consensus pattern (18 bp):
TTTCGCGTTGCGATTTCA
Found at i:7877215 original size:14 final size:14
Alignment explanation
Indices: 7877196--7877251 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 14
7877186 TTTCATTTCG
7877196 CGTTGCGATTATCT
1 CGTTGCGATTATCT
*
7877210 CGTTGCGATTTTCATTCG
1 CGTTGCGA--TT-A-TCT
*
7877228 CGTTGCGATTCTCT
1 CGTTGCGATTATCT
7877242 CGTTGCGATT
1 CGTTGCGATT
7877252 TTCATTTCGC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 20 0.57
16 4 0.11
17 1 0.03
18 10 0.29
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTATCT
Found at i:7877220 original size:32 final size:33
Alignment explanation
Indices: 7877179--7877269 Score: 150
Period size: 32 Copynumber: 2.8 Consensus size: 33
7877169 TTAGTTTCGT
7877179 GTTGCGA-TTTCATTTCGCGTTGCGATTATCTC
1 GTTGCGATTTTCATTTCGCGTTGCGATTATCTC
*
7877211 GTTGCGATTTTCA-TTCGCGTTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCGTTGCGATTATCTC
*
7877243 GTTGCGATTTTCATTTCGCATTGCGAT
1 GTTGCGATTTTCATTTCGCGTTGCGAT
7877270 AGTCATTTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 38 0.69
33 17 0.31
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCGTTGCGATTATCTC
Found at i:7878794 original size:21 final size:21
Alignment explanation
Indices: 7878728--7878794 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
7878718 GTGAATCGGG
*
7878728 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
7878748 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
7878770 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
7878791 CTCT
1 CTCT
7878795 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:7879403 original size:94 final size:94
Alignment explanation
Indices: 7879239--7879543 Score: 503
Period size: 94 Copynumber: 3.3 Consensus size: 94
7879229 GAATAGTTTC
*
7879239 AATTGGCAGCAAACGAATAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTC
1 AATTGGCAGCAACCGAATAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTC
7879304 ACAGTGTTAAAGAATACACAGTTTAGCAG
66 ACAGTGTTAAAGAATACACAGTTTAGCAG
* * *
7879333 AATTGGCAGCAACCAAACAAATTTACTTTCAACCAAAAGACAAAACAAAGATAAATACTAACTTC
1 AATTGGCAGCAACCGAATAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTC
*
7879398 GCAGTGTTAAAGAATACACAGTTTAGCAG
66 ACAGTGTTAAAGAATACACAGTTTAGCAG
7879427 AATTGGCAGCAACCGAATAAATTTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTT
1 AATTGGCAGCAACCGAATAAATTTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTT
*
7879491 CACAGTGTT----AATAAACAGTTTAGCAG
65 CACAGTGTTAAAGAATACACAGTTTAGCAG
*
7879517 TATTGGCAGCAACCGAATAAATTTACT
1 AATTGGCAGCAACCGAATAAATTTACT
7879544 AAGGAATCTA
Statistics
Matches: 198, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
90 41 0.21
93 19 0.10
94 138 0.70
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (94 bp):
AATTGGCAGCAACCGAATAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTC
ACAGTGTTAAAGAATACACAGTTTAGCAG
Found at i:7881322 original size:19 final size:19
Alignment explanation
Indices: 7881236--7881381 Score: 132
Period size: 19 Copynumber: 8.1 Consensus size: 19
7881226 TCTTTTGGTT
*
7881236 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
7881255 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
** *
7881275 GGAAATGACTATCACAA--C
1 -GAAATGAAAATCGCAACGC
*
7881293 --AA-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
7881309 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
7881326 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
7881342 GAAATGAAAATCGTAACGC
1 GAAATGAAAATCGCAACGC
*
7881361 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
7881380 GA
1 GA
7881382 TTATCTCGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 24
0.73 0.09 0.17
Matches are distributed among these distances:
14 18 0.18
15 3 0.03
16 3 0.03
17 2 0.02
18 4 0.04
19 43 0.42
20 27 0.26
21 2 0.02
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:7881331 original size:33 final size:33
Alignment explanation
Indices: 7881236--7881359 Score: 140
Period size: 33 Copynumber: 3.5 Consensus size: 33
7881226 TCTTTTGGTT
7881236 GAAATGAAAATCGCAACGAGAGAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAAC--GAG-A-G--AATCGCAACGC
** * *
7881275 GGAAATGACTATCACAACAAGAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGAGAGAATCGCAACGC
7881309 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
7881342 GAAATGAAAATCGTAACG
1 GAAATGAAAATCGCAACG
7881360 CGAAATGAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
33 46 0.61
34 11 0.15
36 1 0.01
37 1 0.01
38 2 0.03
40 14 0.19
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:7881416 original size:19 final size:19
Alignment explanation
Indices: 7881388--7881471 Score: 88
Period size: 19 Copynumber: 4.6 Consensus size: 19
7881378 GCGATTATCT
7881388 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
* *
7881407 CGTTGTGA--TT-A--TCT
1 CGTTGCGATTTTCATTTCG
7881421 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
**
7881440 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTT-CG
7881460 CGTTGCGATTTT
1 CGTTGCGATTTT
7881472 TATTCTCGAA
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
14 9 0.18
16 3 0.06
17 3 0.06
19 24 0.47
20 12 0.24
ACGTcount: A:0.12, C:0.20, G:0.23, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:7881422 original size:33 final size:33
Alignment explanation
Indices: 7881380--7881444 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
7881370 ATCGCAATGC
7881380 GATTATCTCGTTGCGATTTTCATTTCGCGTTGT
1 GATTATCTCGTTGCGATTTTCATTTCGCGTTGT
7881413 GATTATCTCGTTGCGATTTTCATTTCGCGTTG
1 GATTATCTCGTTGCGATTTTCATTTCGCGTTG
7881445 CGATAGTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
GATTATCTCGTTGCGATTTTCATTTCGCGTTGT
Found at i:7882039 original size:20 final size:20
Alignment explanation
Indices: 7882016--7882231 Score: 127
Period size: 20 Copynumber: 10.7 Consensus size: 20
7882006 CGATAGTCAG
7882016 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
7882036 ATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGT
*
7882056 AATT-GCATTGCGATTTACTT
1 -ATTCGCATTGCGATTTACGT
* *
7882076 AATCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* * *
7882096 ATTCGCATTGCGAATTATGAA
1 ATTCGCATTGCGATTTACG-T
* ** *
7882117 AATCGCAACGCGA-ATACGT
1 ATTCGCATTGCGATTTACGT
* * * * *
7882136 AAATCGCAATGCGAATTAGGAAA
1 -ATTCGCATTGCGATTTACG--T
*
7882159 ATT-GCATTGCGATAGT-CAGT
1 ATTCGCATTGCGAT-TTAC-GT
* **
7882179 A-TCGCATTGCGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
*
7882199 ATTCGCATTGCGATTTACTT
1 ATTCGCATTGCGATTTACGT
7882219 ATTCGCATTGCGA
1 ATTCGCATTGCGA
7882232 ATTGAGAAAA
Statistics
Matches: 149, Mismatches: 34, Indels: 26
0.71 0.16 0.12
Matches are distributed among these distances:
19 3 0.02
20 105 0.70
21 37 0.25
22 4 0.03
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:7882064 original size:40 final size:40
Alignment explanation
Indices: 7882016--7882231 Score: 125
Period size: 41 Copynumber: 5.3 Consensus size: 40
7882006 CGATAGTCAG
* *
7882016 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* * *
7882056 AATT-GCATTGCGATTTACTTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* * * ** * *
7882096 ATTCGCATTGCGAATTATGAAAATCGCAACGCGA-ATACGT
1 ATTCGCATTGCGATTTACG-TAATCGCATTGCGATTTACCT
* * * * * * * *
7882136 AAATCGCAATGCGAATTAGGAAAATTGCATTGCGATAGT-CAGT
1 -ATTCGCATTGCGATTTACG-TAATCGCATTGCGAT-TTAC-CT
* ** *
7882179 A-TCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTT
1 ATTCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACCT
7882219 ATTCGCATTGCGA
1 ATTCGCATTGCGA
7882232 ATTGAGAAAA
Statistics
Matches: 138, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
39 3 0.02
40 54 0.39
41 76 0.55
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
Found at i:7882143 original size:41 final size:41
Alignment explanation
Indices: 7882098--7882273 Score: 110
Period size: 41 Copynumber: 4.3 Consensus size: 41
7882088 ATTTACGTAT
7882098 TCGCATTGCGAATTATGAAAATCGCAACGCGAATACGTAAA
1 TCGCATTGCGAATTATGAAAATCGCAACGCGAATACGTAAA
* * * ** *
7882139 TCGCAATGCGAATTAGGAAAATTGCATTGCG-ATA-GTCAGTA
1 TCGCATTGCGAATTATGAAAATCGCAACGCGAATACGT-A-AA
* * * ** * * *
7882180 TCGCATTGCG-ATTTTCCAAATTCGCATTGCGATTTAC-TTAT
1 TCGCATTGCGAATTAT-GAAAATCGCAACGCGA-ATACGTAAA
** *
7882221 TCGCATTGCGAATTGA-GAAAATCGCAACGCGAAATTGGAAAA
1 TCGCATTGCGAATT-ATGAAAATCGCAACGCG-AATACGTAAA
7882263 TCGCATTGCGA
1 TCGCATTGCGA
7882274 TAGTAATAAT
Statistics
Matches: 98, Mismatches: 27, Indels: 19
0.68 0.19 0.13
Matches are distributed among these distances:
39 2 0.02
40 7 0.07
41 70 0.71
42 16 0.16
43 3 0.03
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (41 bp):
TCGCATTGCGAATTATGAAAATCGCAACGCGAATACGTAAA
Found at i:7882169 original size:21 final size:21
Alignment explanation
Indices: 7882098--7882170 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
7882088 ATTTACGTAT
* *
7882098 TCGCATTGCGAATTATGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
7882119 TCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGAAAA
*
7882139 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
7882160 TTGCATTGCGA
1 TCGCAATGCGA
7882171 TAGTCAGTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTACGAAAA
Found at i:7882273 original size:21 final size:22
Alignment explanation
Indices: 7882221--7882273 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
7882211 ATTTACTTAT
7882221 TCGCATTGCG-AATTGAGAAAA
1 TCGCATTGCGAAATTGAGAAAA
**
7882242 TCGCAACGCGAAATTG-GAAAA
1 TCGCATTGCGAAATTGAGAAAA
7882263 TCGCATTGCGA
1 TCGCATTGCGA
7882274 TAGTAATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGAGAAAA
Found at i:7885409 original size:2 final size:2
Alignment explanation
Indices: 7885402--7885433 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7885392 AATTATCATA
7885402 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7885434 TCTTTGTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7887253 original size:71 final size:71
Alignment explanation
Indices: 7887131--7887273 Score: 259
Period size: 71 Copynumber: 2.0 Consensus size: 71
7887121 GGATTTTTTG
*
7887131 TGGAAAATCAAATCAGAGAATCCCGGTGTACCGTTGTTCCTTTTTGATCACTCTACTGGTGGAGC
1 TGGAAAATCAAATCAGAGAATCCCGGTGTACCGTTGTTCCTTATTGATCACTCTACTGGTGGAGC
7887196 GGTGGC
66 GGTGGC
* *
7887202 TGGAAAATCAAATCAGAGAATCCCGGTGTACCGTTGTTCCTTATTGGTCACTCTACTGGTGGAGT
1 TGGAAAATCAAATCAGAGAATCCCGGTGTACCGTTGTTCCTTATTGATCACTCTACTGGTGGAGC
7887267 GGTGGC
66 GGTGGC
7887273 T
1 T
7887274 TTGAAGGTAC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (71 bp):
TGGAAAATCAAATCAGAGAATCCCGGTGTACCGTTGTTCCTTATTGATCACTCTACTGGTGGAGC
GGTGGC
Found at i:7892297 original size:41 final size:41
Alignment explanation
Indices: 7892240--7892318 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
7892230 TGGTCCCAAC
* * *
7892240 ATTAATAATATGATTTACCCTAAAAATTACTAATATTTTTT
1 ATTAACAATATCATTTACCCTAAAAATCACTAATATTTTTT
* * *
7892281 ATTAACAATATCATTTATCCTACAAATCATTAATATTT
1 ATTAACAATATCATTTACCCTAAAAATCACTAATATTT
7892319 CTTTTTTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (41 bp):
ATTAACAATATCATTTACCCTAAAAATCACTAATATTTTTT
Found at i:7892469 original size:24 final size:24
Alignment explanation
Indices: 7892441--7892496 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
7892431 CATGTCTTAC
7892441 ATCAGACTCAATGAATGTCGGCAT
1 ATCAGACTCAATGAATGTCGGCAT
7892465 ATCAGACTCAATGAATGTCGGCAT
1 ATCAGACTCAATGAATGTCGGCAT
7892489 ATCAGACT
1 ATCAGACT
7892497 AAAAAATAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (24 bp):
ATCAGACTCAATGAATGTCGGCAT
Found at i:7900325 original size:2 final size:2
Alignment explanation
Indices: 7900320--7900349 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7900310 CTTACACAAC
7900320 AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7900350 TTTCGTTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7900505 original size:20 final size:20
Alignment explanation
Indices: 7900480--7900517 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7900470 TGGTTCACGA
7900480 AATGTAAGATTACCGGTGGG
1 AATGTAAGATTACCGGTGGG
7900500 AATGTAAGATTACCGGTG
1 AATGTAAGATTACCGGTG
7900518 AATAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (20 bp):
AATGTAAGATTACCGGTGGG
Found at i:7907514 original size:24 final size:24
Alignment explanation
Indices: 7907443--7907521 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
7907433 CGATGTTGCT
* * *
7907443 ATGTTACTCGAACGAGGACAAACA
1 ATGTTACTCGAACTAGGATAGACA
* *
7907467 ATGCTCTGCTCGAA-TGAGGGTAGACA
1 ATG-T-TACTCGAACT-AGGATAGACA
*
7907493 ATGTTACTCGAACTAGGATAGATA
1 ATGTTACTCGAACTAGGATAGACA
7907517 ATGTT
1 ATGTT
7907522 GTTCGAATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
24 23 0.53
25 3 0.07
26 17 0.40
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (24 bp):
ATGTTACTCGAACTAGGATAGACA
Found at i:7908451 original size:37 final size:37
Alignment explanation
Indices: 7908403--7908487 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 37
7908393 CGGATTGGTT
* *
7908403 GATTTCAGGTCAGGTCAA-AT-CAGATCGATTGATTTTC
1 GATTTCGGGTCAGGTCAATATCCAG-TCAATT-ATTTTC
* *
7908440 GGTTTCGGGTCATGTCAATATCCAGTCAATTATTTTC
1 GATTTCGGGTCAGGTCAATATCCAGTCAATTATTTTC
7908477 GATTT-GGGTCA
1 GATTTCGGGTCA
7908488 ATTTTAGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 6 0.15
37 25 0.61
38 7 0.17
39 3 0.07
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (37 bp):
GATTTCGGGTCAGGTCAATATCCAGTCAATTATTTTC
Found at i:7912140 original size:6 final size:6
Alignment explanation
Indices: 7912131--7912192 Score: 97
Period size: 6 Copynumber: 10.3 Consensus size: 6
7912121 TTCATATACA
*
7912131 TACACG TACACG TACACG TACACG TACACG TACACG TACACA TACACG
1 TACACG TACACG TACACG TACACG TACACG TACACG TACACG TACACG
* *
7912179 TATACA TACACG TA
1 TACACG TACACG TA
7912193 TATTCCTTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.37, C:0.31, G:0.13, T:0.19
Consensus pattern (6 bp):
TACACG
Found at i:7914470 original size:54 final size:54
Alignment explanation
Indices: 7914388--7914561 Score: 262
Period size: 54 Copynumber: 3.2 Consensus size: 54
7914378 TACTATTGGT
7914388 ACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATCGAA
1 ACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATCGAA
* * * * *
7914442 ACTAAGTATGTAACCCACATAATTCATAATATGTTTATGAACGACCGTATCGGTA
1 ACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATC-GAA
*
7914497 A-TAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATCGAC
1 ACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATCGAA
7914550 AC-AACGTGTGCA
1 ACTAA-GTGTGCA
7914562 CCTCAAAGGA
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
53 4 0.04
54 99 0.93
55 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (54 bp):
ACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCATATCGAA
Found at i:7921385 original size:16 final size:15
Alignment explanation
Indices: 7921354--7921408 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
7921344 TATCTTCATT
7921354 TTTCTTATTATTTCA
1 TTTCTTATTATTTCA
*
7921369 TTTCTTATTTCTTTCA
1 TTTCTTA-TTATTTCA
*
7921385 TATT-TTCTTATTTCA
1 T-TTCTTATTATTTCA
7921400 TTTCCTTAT
1 TTT-CTTAT
7921409 CCTTTTCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
14 2 0.06
15 15 0.47
16 13 0.41
17 2 0.06
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTCTTATTATTTCA
Found at i:7925159 original size:17 final size:17
Alignment explanation
Indices: 7925130--7925162 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7925120 TTTGAGGATT
7925130 AAATTAAGTAAATGATA
1 AAATTAAGTAAATGATA
7925147 AAATATAAG-AAATGAT
1 AAAT-TAAGTAAATGAT
7925163 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (17 bp):
AAATTAAGTAAATGATA
Found at i:7926385 original size:54 final size:54
Alignment explanation
Indices: 7926321--7926668 Score: 538
Period size: 54 Copynumber: 6.4 Consensus size: 54
7926311 TTATGTGTAT
* * *
7926321 TATCGGCACTAAGTGTGTAACCCACAGAATTCATAATATGTTTATGAACGACCG
1 TATCAGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * *
7926375 TATCAGCACTATGTGTGCAACCCACAAAATTCATAATATGTTTATGAACAACTG
1 TATCAGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
7926429 TATC-GACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
1 TATCAG-CACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
*
7926483 TATC-GACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCG
1 TATCAG-CACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* *
7926537 TATCAGCACTAAGTGTGCAACCTACAAAATTCATAATATGTTTATGAATGACCG
1 TATCAGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* *
7926591 TATCAACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCC
1 TATCAGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * *
7926645 TATCGGCACTACGTGTGCACCCCA
1 TATCAGCACTAAGTGTGCAACCCA
7926669 AAGGACTTAT
Statistics
Matches: 271, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
53 1 0.00
54 269 0.99
55 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.27
Consensus pattern (54 bp):
TATCAGCACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
Found at i:7926602 original size:162 final size:162
Alignment explanation
Indices: 7926321--7926668 Score: 597
Period size: 162 Copynumber: 2.1 Consensus size: 162
7926311 TTATGTGTAT
*
7926321 TATCGGCACTAAGTGTGTAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAGCACTA
1 TATCGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAGCACTA
* * *
7926386 TGTGTGCAACCCACAAAATTCATAATATGTTTATGAACAACTGTATCGACACTAAGTGTGCAACC
66 AGTGTGCAACCCACAAAATTCATAATATGTTTATGAACAACCGTATCAACACTAAGTGTGCAACC
*
7926451 CACAAAATTCATAATATGTTTATGAACGACCG
131 CACAAAATTCATAATATGTTTATGAACGACCC
*
7926483 TATCGACACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAGCACTA
1 TATCGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAGCACTA
* **
7926548 AGTGTGCAACCTACAAAATTCATAATATGTTTATGAATGACCGTATCAACACTAAGTGTGCAACC
66 AGTGTGCAACCCACAAAATTCATAATATGTTTATGAACAACCGTATCAACACTAAGTGTGCAACC
7926613 CACAAAATTCATAATATGTTTATGAACGACCC
131 CACAAAATTCATAATATGTTTATGAACGACCC
* *
7926645 TATCGGCACTACGTGTGCACCCCA
1 TATCGGCACTAAGTGTGCAACCCA
7926669 AAGGACTTAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
162 174 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.27
Consensus pattern (162 bp):
TATCGGCACTAAGTGTGCAACCCACAGAATTCATAATATGTTTATGAACGACCGTATCAGCACTA
AGTGTGCAACCCACAAAATTCATAATATGTTTATGAACAACCGTATCAACACTAAGTGTGCAACC
CACAAAATTCATAATATGTTTATGAACGACCC
Found at i:7928195 original size:8 final size:7
Alignment explanation
Indices: 7928172--7928214 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
7928162 ATAAATATTC
7928172 CATTTTT
1 CATTTTT
7928179 CA-TTTT
1 CATTTTT
7928185 --TTTTT
1 CATTTTT
7928190 CATTTTT
1 CATTTTT
7928197 CATTTTT
1 CATTTTT
7928204 CACTTTTT
1 CA-TTTTT
7928212 CAT
1 CAT
7928215 CTCTATCTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 4 0.12
6 4 0.12
7 17 0.53
8 7 0.22
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:7928210 original size:15 final size:14
Alignment explanation
Indices: 7928172--7928214 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 14
7928162 ATAAATATTC
7928172 CATTTTTCA-TTTT
1 CATTTTTCATTTTT
7928185 --TTTTTCATTTTT
1 CATTTTTCATTTTT
7928197 CATTTTTCACTTTTT
1 CATTTTTCA-TTTTT
7928212 CAT
1 CAT
7928215 CTCTATCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 7 0.27
12 4 0.15
14 7 0.27
15 8 0.31
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:7930243 original size:87 final size:88
Alignment explanation
Indices: 7929994--7930248 Score: 351
Period size: 87 Copynumber: 2.9 Consensus size: 88
7929984 TTAAGAAACA
* * *
7929994 AAAAAATCTCAAGTGAGAT-AAATTGTTGAAATGTTTTGATTTTGAGCTTCGAGGGAAGCTATTT
1 AAAAAATCTCAAGTGAGATAAAATTGTTGAAATGTTTT-TTTTTGAGCTTCAAGGGAAGCTATCT
*
7930058 CAAGTAAGATGAAATATTGTTTTAAG
65 CAAGTGAGAT-AAA-ATTGTTTTAAG
*
7930084 AAAAATAATCTCGAGTGAGATAAAATTGTTGAAATG----TTTTTGAGCTTCAAGGGAAGCTATC
1 -AAAA-AATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTTTTTGAGCTTCAAGGGAAGCTATC
*
7930145 TCGAGTGAGATAAAATTGTTTTAAG
64 TCAAGTGAGATAAAATTGTTTTAAG
**
7930170 -AAAAATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTTTTTGAGCTTCAAGGGAAATTATCTC
1 AAAAAATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTTTTTGAGCTTCAAGGGAAGCTATCTC
7930234 AAGTGAGATAAAATT
66 AAGTGAGATAAAATT
7930249 ATCAAAATGT
Statistics
Matches: 148, Mismatches: 10, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
83 29 0.20
84 3 0.02
86 11 0.07
87 42 0.28
88 31 0.21
91 4 0.03
92 14 0.09
93 14 0.09
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (88 bp):
AAAAAATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTTTTTGAGCTTCAAGGGAAGCTATCTC
AAGTGAGATAAAATTGTTTTAAG
Found at i:7930283 original size:51 final size:51
Alignment explanation
Indices: 7930174--7930417 Score: 281
Period size: 51 Copynumber: 4.7 Consensus size: 51
7930164 TTTAAGAAAA
* *
7930174 ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTTTTTGAGCTTCAAGGGAAATT
1 ATCTCAAGTGAGATAAAATTGTTGAAATG----TTTTTGAGCTTCGAGGGAAACT
* ** * *
7930229 ATCTCAAGTGAGATAAAATTATCAAAATGTTTTTGTGCTTCGAGGGAAGCT
1 ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTGAGCTTCGAGGGAAACT
** * * * *
7930280 ATCTTGAGTGAGATAAAATTGTTGAAATATTTTTTAACTTCGAGGGAAGCT
1 ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTGAGCTTCGAGGGAAACT
* * * *
7930331 ATCTCAAGTGAGATAAAAATGTTGAAATGTCTTTCAGCTTCGAAGGAAACT
1 ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTGAGCTTCGAGGGAAACT
* *
7930382 ATCTTAAGTGAGATCAAATTGTTGAAATGTTTTTGA
1 ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTGA
7930418 AATTATTTTC
Statistics
Matches: 159, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
51 133 0.84
55 26 0.16
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (51 bp):
ATCTCAAGTGAGATAAAATTGTTGAAATGTTTTTGAGCTTCGAGGGAAACT
Found at i:7944723 original size:27 final size:25
Alignment explanation
Indices: 7944652--7944726 Score: 71
Period size: 27 Copynumber: 2.9 Consensus size: 25
7944642 CTTTTATTTT
* *
7944652 AATAATATATAATAAATTATTAATAA
1 AATAATAT-TATTAAATAATTAATAA
* *
7944678 AATAACATTATCT-ATTAATTCAATAAA
1 AATAATATTAT-TAAATAATT-AAT-AA
7944705 AATAATATTATTAAATAATTAA
1 AATAATATTATTAAATAATTAA
7944727 AATATACTCC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
25 7 0.18
26 14 0.36
27 18 0.46
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
AATAATATTATTAAATAATTAATAA
Found at i:7944822 original size:25 final size:25
Alignment explanation
Indices: 7944768--7944824 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
7944758 TATGTGTACT
**
7944768 TTAATATTATAATTTTAATATTTTA
1 TTAATATTATAATTTTAATAAGTTA
* *
7944793 ATAATATTATTACTTTT-ATAAGTTA
1 TTAATATTA-TAATTTTAATAAGTTA
7944818 TTAATAT
1 TTAATAT
7944825 ACTCAAGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (25 bp):
TTAATATTATAATTTTAATAAGTTA
Found at i:7951021 original size:2 final size:2
Alignment explanation
Indices: 7951014--7951039 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7951004 ATATTAATTG
7951014 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7951040 TTAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7952027 original size:27 final size:31
Alignment explanation
Indices: 7951991--7952061 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 31
7951981 AAACACTCAA
7951991 AATATTATTATTTT-GTAT-A-TTTAATAAT
1 AATATTATTATTTTAGTATCATTTTAATAAT
7952019 AATA-TATTATTTTAGTATCATTTTAATAA-
1 AATATTATTATTTTAGTATCATTTTAATAAT
7952048 AACTATTAATTATT
1 AA-TATT-ATTATT
7952062 AAATTATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
27 9 0.24
28 8 0.22
29 3 0.08
30 10 0.27
31 1 0.03
32 6 0.16
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (31 bp):
AATATTATTATTTTAGTATCATTTTAATAAT
Found at i:7952096 original size:5 final size:5
Alignment explanation
Indices: 7952086--7952112 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7952076 GATAATTTTA
7952086 ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT AT
7952113 TTTTATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:7952250 original size:8 final size:8
Alignment explanation
Indices: 7952234--7952283 Score: 66
Period size: 8 Copynumber: 6.2 Consensus size: 8
7952224 ATAATATTTC
7952234 TATTTTAA
1 TATTTTAA
*
7952242 TATTATAA
1 TATTTTAA
7952250 T-TTTTAA
1 TATTTTAA
7952257 TATTTTAA
1 TATTTTAA
*
7952265 TAATATTAA
1 T-ATTTTAA
7952274 TATTTTAA
1 TATTTTAA
7952282 TA
1 TA
7952284 ATTAATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
7 6 0.17
8 23 0.64
9 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTTTAA
Found at i:7952275 original size:17 final size:17
Alignment explanation
Indices: 7952253--7952307 Score: 74
Period size: 17 Copynumber: 3.1 Consensus size: 17
7952243 ATTATAATTT
7952253 TTAATATTTTAATAATA
1 TTAATATTTTAATAATA
7952270 TTAATATTTTAATAATTAA
1 TTAATATTTTAATAA-T-A
*
7952289 TTAATATAATTAATAATA
1 TTAATAT-TTTAATAATA
7952307 T
1 T
7952308 ATTATTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
17 15 0.44
18 3 0.09
19 9 0.26
20 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAATATTTTAATAATA
Found at i:7952289 original size:15 final size:15
Alignment explanation
Indices: 7952238--7952289 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
7952228 TATTTCTATT
* **
7952238 TTAATATTATAATTT
1 TTAATATTTTAATAA
7952253 TTAATATTTTAATAATA
1 TTAATATTTTAAT-A-A
7952270 TTAATATTTTAATAA
1 TTAATATTTTAATAA
7952285 TTAAT
1 TTAAT
7952290 TAATATAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 18 0.56
16 1 0.03
17 13 0.41
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAATATTTTAATAA
Found at i:7952311 original size:20 final size:19
Alignment explanation
Indices: 7952241--7952311 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 19
7952231 TTCTATTTTA
*
7952241 ATATT-ATAAT-TTTTAAT
1 ATATTAATAATATATTAAT
*
7952258 ATTTTAAT-A-ATATTAAT
1 ATATTAATAATATATTAAT
*
7952275 ATTTTAATAAT-TAATTAAT
1 ATATTAATAATAT-ATTAAT
7952294 ATAATTAATAATATATTA
1 AT-ATTAATAATATATTA
7952312 TTTTTATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
17 19 0.43
18 4 0.09
19 8 0.18
20 12 0.27
21 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATTAATAATATATTAAT
Found at i:7952337 original size:43 final size:44
Alignment explanation
Indices: 7952276--7952366 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 44
7952266 AATATTAATA
* *
7952276 TTTTAATAATTAATTAATATAATTAATAA-TAT-ATTATTTTTAT
1 TTTTAATAAATAAGTAATATAATTAATAATTATAATTA-TTTTAT
*
7952319 TTTTAATAAATAAGTAATATAATTTATAATTTATAATTATTTTAT
1 TTTTAATAAATAAGTAATATAATTAATAA-TTATAATTATTTTAT
7952364 TTT
1 TTT
7952367 ATTTTAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 26 0.62
45 12 0.29
46 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (44 bp):
TTTTAATAAATAAGTAATATAATTAATAATTATAATTATTTTAT
Found at i:7952461 original size:14 final size:14
Alignment explanation
Indices: 7952432--7952473 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
7952422 ATATTTTAAT
*
7952432 AATAATATTTACATA
1 AATAATA-TTAAATA
7952447 AATAATATTAAATA
1 AATAATATTAAATA
*
7952461 AATTAT-TTAAATA
1 AATAATATTAAATA
7952474 TTCTAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 7 0.28
14 11 0.44
15 7 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (14 bp):
AATAATATTAAATA
Found at i:7952507 original size:24 final size:24
Alignment explanation
Indices: 7952480--7952537 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 24
7952470 AATATTCTAA
7952480 AAATAATATTATTATTTGATTAAT
1 AAATAATATTATTATTTGATTAAT
*
7952504 AAAT-A-A-TACTATTTGATTAAT
1 AAATAATATTATTATTTGATTAAT
7952525 AAATAATATTATT
1 AAATAATATTATT
7952538 TATTGTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 18 0.62
22 2 0.07
23 2 0.07
24 7 0.24
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (24 bp):
AAATAATATTATTATTTGATTAAT
Found at i:7961724 original size:22 final size:22
Alignment explanation
Indices: 7961682--7961724 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7961672 TAGAGACATT
*
7961682 ATACATGTTTTACATTTTCATC
1 ATACATGTTTTACATTATCATC
*
7961704 ATACATTTATTTACA-TATCAT
1 ATACATGT-TTTACATTATCAT
7961725 AGGAACCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.16, G:0.02, T:0.49
Consensus pattern (22 bp):
ATACATGTTTTACATTATCATC
Found at i:7963216 original size:21 final size:21
Alignment explanation
Indices: 7963190--7963235 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7963180 GTCGCTTGTT
7963190 GTCCGCCGTCCTCCGACCACC
1 GTCCGCCGTCCTCCGACCACC
*
7963211 GTCCGCCGTCTTCCGACCACC
1 GTCCGCCGTCCTCCGACCACC
7963232 GTCC
1 GTCC
7963236 ACCACCGCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.09, C:0.54, G:0.20, T:0.17
Consensus pattern (21 bp):
GTCCGCCGTCCTCCGACCACC
Found at i:7970700 original size:21 final size:20
Alignment explanation
Indices: 7970661--7970700 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7970651 TCAGACTTGC
* *
7970661 AAAATCTAGGGAGATTAGGA
1 AAAATCTAGGAACATTAGGA
7970681 AAAATCTAGGTAACATTAGG
1 AAAATCTAGG-AACATTAGG
7970701 TTTATTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.45, C:0.07, G:0.25, T:0.23
Consensus pattern (20 bp):
AAAATCTAGGAACATTAGGA
Found at i:7973560 original size:2 final size:2
Alignment explanation
Indices: 7973553--7973585 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7973543 CTATGTGTAT
7973553 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7973586 TCCTATGACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7976676 original size:26 final size:26
Alignment explanation
Indices: 7976639--7976704 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
7976629 GAGGTAATTT
* *
7976639 TTATTTACTTATTTATTTTGAATAAA
1 TTATTTATTTATTTAATTTGAATAAA
*
7976665 TTATTTATTTATTTAATTTGAATAAT
1 TTATTTATTTATTTAATTTGAATAAA
7976691 TTATTTATTTATTT
1 TTATTTATTTATTT
7976705 GAGGTATGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.64
Consensus pattern (26 bp):
TTATTTATTTATTTAATTTGAATAAA
Found at i:7977256 original size:20 final size:21
Alignment explanation
Indices: 7977231--7977270 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7977221 CTTTGTATAG
7977231 TAGTATCGATACCA-AAGGCA
1 TAGTATCGATACCATAAGGCA
7977251 TAGTATCGATACCATAAGGC
1 TAGTATCGATACCATAAGGC
7977271 CCCAACGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (21 bp):
TAGTATCGATACCATAAGGCA
Found at i:7980123 original size:28 final size:28
Alignment explanation
Indices: 7980091--7980172 Score: 79
Period size: 28 Copynumber: 3.2 Consensus size: 28
7980081 GTTTACAAAC
7980091 TTATCAGAGCATATACAATTCAAATCGT
1 TTATCAGAGCATATACAATTCAAATCGT
** **
7980119 TTATCTTA-CAT-GCCAA--CAAA-C--
1 TTATCAGAGCATATACAATTCAAATCGT
7980140 TTATCAGAGCATATACAATTCAAATCGT
1 TTATCAGAGCATATACAATTCAAATCGT
7980168 TTATC
1 TTATC
7980173 TTACATGCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 14
0.64 0.13 0.23
Matches are distributed among these distances:
21 6 0.15
22 3 0.08
23 4 0.10
24 4 0.10
25 4 0.10
26 4 0.10
27 3 0.08
28 11 0.28
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (28 bp):
TTATCAGAGCATATACAATTCAAATCGT
Found at i:7980157 original size:49 final size:49
Alignment explanation
Indices: 7980085--7980184 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
7980075 ATAAAAGTTT
7980085 ACAAACTTATCAGAGCATATACAATTCAAATCGTTTATCTTACATGCCA
1 ACAAACTTATCAGAGCATATACAATTCAAATCGTTTATCTTACATGCCA
7980134 ACAAACTTATCAGAGCATATACAATTCAAATCGTTTATCTTACATGCCA
1 ACAAACTTATCAGAGCATATACAATTCAAATCGTTTATCTTACATGCCA
7980183 AC
1 AC
7980185 TACATTTCAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (49 bp):
ACAAACTTATCAGAGCATATACAATTCAAATCGTTTATCTTACATGCCA
Found at i:7983046 original size:21 final size:19
Alignment explanation
Indices: 7983022--7983061 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
7983012 ATTGCCTTGT
7983022 AGTATCGATACTTACTCAACC
1 AGTATCGATAC-TAC-CAACC
7983043 AGTATCGATACTACCAACC
1 AGTATCGATACTACCAACC
7983062 CATATTCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 3 0.16
21 11 0.58
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (19 bp):
AGTATCGATACTACCAACC
Found at i:7983880 original size:14 final size:15
Alignment explanation
Indices: 7983861--7983890 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7983851 GAAATATATG
7983861 TTTATTTATTT-TAA
1 TTTATTTATTTATAA
7983875 TTTATTTATTTATAA
1 TTTATTTATTTATAA
7983890 T
1 T
7983891 ATTAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTATTTATTTATAA
Found at i:7985539 original size:23 final size:23
Alignment explanation
Indices: 7985513--7985557 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7985503 CGATCTTGAC
7985513 ATCAAAAGGTTATAATTT-TTTAA
1 ATCAAAAGG-TATAATTTATTTAA
* *
7985536 ATCAACATGTATAATTTATTTA
1 ATCAAAAGGTATAATTTATTTA
7985558 TTTGATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (23 bp):
ATCAAAAGGTATAATTTATTTAA
Found at i:7987289 original size:202 final size:199
Alignment explanation
Indices: 7986676--7987361 Score: 705
Period size: 202 Copynumber: 3.4 Consensus size: 199
7986666 GGAGTTATAT
* * ** *
7986676 TTCTA-TCAAAATTCAAACCAAGGTATTTTAGTCAAGAAGAAGACCCAAATTGGTTGTGATTTAG
1 TTCTAGTCAAAATTCAAACTAAGGTCTTCAAGTCAAGAAGAAGACCCAAA-TGATTGTGATTTAG
* * * * *
7986740 CAATAAAGAACTACTT-TTCAACCCAGATTTCGATATAGCTCAAGTCGAGAAGAGCTATTTGTCA
65 CAATAAAGAACTACTTCCT-AACCCAGATTTTGATATAGCTTAAGTCGAGAAGAGCTATCTGTCG
* * * **
7986804 ACCTAAAGCTTTCGAGTTCGATTCCACTCAACTCGAGAGCACATCGATCGCATTGTAGCAACAAG
129 ACC-AAAGCTTTC-AGTTCGATTCCACTCAACTCGAGAGCGCATTGATCGCATGGTAGCAATGAG
*
7986869 GAATTATC
192 GAACTATC
* * * * * * * *
7986877 TTATGGTCAAAATTCAAACTAAGGTCTTCAAGTCTAGAAGAAGGCCAAAATCGACTGCGAATTAG
1 TTCTAGTCAAAATTCAAACTAAGGTCTTCAAGTCAAGAAGAAGACCCAAAT-GATTGTGATTTAG
* * ** * *
7986942 CAATAAGGAACTACTTCCCAACTAAAATTTTGATATAGCTTAAGTCGAGAAGAGTTATCTGTCG-
65 CAATAAAGAACTACTTCCTAACCCAGATTTTGATATAGCTTAAGTCGAGAAGAGCTATCTGTCGA
** * * * *
7987006 CCAAAGCTTTCAGTTTTAGTTCCACTCAACTCGAGAGCGCATTAATTGTATGGTTGCAATGAGGA
130 CCAAAGCTTTCAGTTCGA-TTCCACTCAACTCGAGAGCGCATTGATCGCATGGTAGCAATGAGGA
*
7987071 ACTACC
194 ACTATC
* * * * * *
7987077 CTCTAGTCAAAATTCAAACTGAGGTCTTTAAGTCAATAAGGAGACCCCAAATGATTTATGATTTA
1 TTCTAGTCAAAATTCAAACTAAGGTCTTCAAGTCAAGAAGAAGA-CCCAAATGA-TTGTGATTTA
* * * * *
7987142 GCAATGATGAACTACTTCCTAGCCCAGATTTTGACATAGCTTAAGTCGAGAAGAGCTATCTATCG
64 GCAATAAAGAACTACTTCCTAACCCAGATTTTGATATAGCTTAAGTCGAGAAGAGCTATCTGTCG
* * *
7987207 ACCAAAGCTTTCAAGTTCGATTCCACTCATCTCGAGATCGCATTGACCGCATGGTAGCAATGAGG
129 ACCAAAGCTTTC-AGTTCGATTCCACTCAACTCGAGAGCGCATTGATCGCATGGTAGCAATGAGG
*
7987272 AACTATA
193 AACTATC
* * *** * * *
7987279 TTCCAGTCAAAATTCAAATTAAGGTCTTCAAGTTTGGAAAAAAACCCAAATCGGA-TGTAATTTA
1 TTCTAGTCAAAATTCAAACTAAGGTCTTCAAGTCAAGAAGAAGACCCAAAT--GATTGTGATTTA
7987343 GCAATAAAGAACTACTTCC
64 GCAATAAAGAACTACTTCC
7987362 CAGCCCAGTT
Statistics
Matches: 387, Mismatches: 88, Indels: 20
0.78 0.18 0.04
Matches are distributed among these distances:
199 5 0.01
200 87 0.22
201 104 0.27
202 184 0.48
203 7 0.02
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (199 bp):
TTCTAGTCAAAATTCAAACTAAGGTCTTCAAGTCAAGAAGAAGACCCAAATGATTGTGATTTAGC
AATAAAGAACTACTTCCTAACCCAGATTTTGATATAGCTTAAGTCGAGAAGAGCTATCTGTCGAC
CAAAGCTTTCAGTTCGATTCCACTCAACTCGAGAGCGCATTGATCGCATGGTAGCAATGAGGAAC
TATC
Found at i:7988068 original size:53 final size:51
Alignment explanation
Indices: 7987972--7988079 Score: 128
Period size: 51 Copynumber: 2.1 Consensus size: 51
7987962 TATTTTTTAA
* * * * *
7987972 ATATATATATATATAATTTTAAAAATATATGTTGTATATTTTTGAATATAT
1 ATATATATATATATAATTTTAAAAATACATATTATATATTTTTGAAAACAT
*
7988023 ATATATATATATATAGTTCTTAAATAAATACATATTATATA-TTTTGAAAACAT
1 ATATATATATATATAATT-TT-AA-AAATACATATTATATATTTTTGAAAACAT
7988076 ATAT
1 ATAT
7988080 TTCTTTGAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
51 17 0.35
52 2 0.04
53 16 0.33
54 13 0.27
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (51 bp):
ATATATATATATATAATTTTAAAAATACATATTATATATTTTTGAAAACAT
Found at i:7997346 original size:39 final size:36
Alignment explanation
Indices: 7997292--7997476 Score: 124
Period size: 37 Copynumber: 5.2 Consensus size: 36
7997282 GTGCAAAGAT
* *
7997292 CAAAGCAAAGCAAAGAGAAAAAAGAAAAAAAATAGAGAG
1 CAAAGAAAAACAAAGAG--AAAAGAAAAAAAA-AGAGAG
*
7997331 CAAAGAAAAACAAAGAGAAAAGAAAAACAAAGAGA-
1 CAAAGAAAAACAAAGAGAAAAGAAAAAAAAAGAGAG
*
7997366 -AAAGAGAAA-AAA-AGAAAAG-AAAAAAAA-AGAG
1 CAAAGAAAAACAAAGAGAAAAGAAAAAAAAAGAGAG
* * * * *
7997397 CAAAGATAAA-AGAGAAAAGAAGTAAAGAAAAAA-AAAA
1 CAAAGAAAAACAAAGAGAA-AAG-AAA-AAAAAAGAGAG
*
7997434 CAAAGAGAAA-AAAGA-AGAAAGAAAAGAAAAAGA-AG
1 CAAAGAAAAACAAAGAGA-AAAGAAAA-AAAAAGAGAG
7997469 -AAAGAAAA
1 CAAAGAAAA
7997477 TGTATCAAGT
Statistics
Matches: 122, Mismatches: 14, Indels: 25
0.76 0.09 0.16
Matches are distributed among these distances:
30 3 0.02
31 7 0.06
32 17 0.14
33 6 0.05
34 19 0.16
35 9 0.07
36 12 0.10
37 34 0.28
39 15 0.12
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.02
Consensus pattern (36 bp):
CAAAGAAAAACAAAGAGAAAAGAAAAAAAAAGAGAG
Found at i:7997347 original size:17 final size:17
Alignment explanation
Indices: 7997311--7997464 Score: 116
Period size: 15 Copynumber: 9.6 Consensus size: 17
7997301 GCAAAGAGAA
*
7997311 AAAAGAAAAAAAATAGAG
1 AAAAGAAAAACAA-AGAG
7997329 AGCAAAGAAAAACAAAGAG
1 A--AAAGAAAAACAAAGAG
7997348 AAAAGAAAAACAAAGAG
1 AAAAGAAAAACAAAGAG
*
7997365 AAAAGAGAAA-AAA-AG
1 AAAAGAAAAACAAAGAG
*
7997380 AAAAGAAAAAAAAAGAG
1 AAAAGAAAAACAAAGAG
* *
7997397 CAAAG--ATA-AAAGAG
1 AAAAGAAAAACAAAGAG
**
7997411 AAAAG--AAGTAAAGA-
1 AAAAGAAAAACAAAGAG
7997425 AAAA-AAAAACAAAGAG
1 AAAAGAAAAACAAAGAG
* *
7997441 AAAA-AAGAA-GAA-AG
1 AAAAGAAAAACAAAGAG
7997455 AAAAGAAAAA
1 AAAAGAAAAA
7997465 GAAGAAAGAA
Statistics
Matches: 114, Mismatches: 13, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
14 21 0.18
15 31 0.27
16 14 0.12
17 31 0.27
18 1 0.01
19 5 0.04
20 11 0.10
ACGTcount: A:0.77, C:0.03, G:0.18, T:0.02
Consensus pattern (17 bp):
AAAAGAAAAACAAAGAG
Found at i:7997380 original size:44 final size:50
Alignment explanation
Indices: 7997332--7997476 Score: 132
Period size: 49 Copynumber: 3.1 Consensus size: 50
7997322 AATAGAGAGC
*
7997332 AAAGAAAAACAAAGAGAAAAGA-AAA-A-CAAAGAGAAAAG-AG-AAA-A
1 AAAGAAAAACAAAGAGAAAAGACAAAGATAAAAGAGAAAAGAAGTAAAGA
7997376 AAAGAAAAGA-AAA-A-AAAAGAGCAAAGATAAAAGAGAAAAGAAGTAAAGA
1 AAAGAAAA-ACAAAGAGAAAAGA-CAAAGATAAAAGAGAAAAGAAGTAAAGA
* * * * *
7997425 AAAAAAAAACAAAGAGAAAAAAGAAGAAAGAAAAGA-AAAAGAAG-AAAGA
1 AAAGAAAAACAAAGAGAAAAGACAA-AGATAAAAGAGAAAAGAAGTAAAGA
7997474 AAA
1 AAA
7997477 TGTATCAAGT
Statistics
Matches: 83, Mismatches: 6, Indels: 19
0.77 0.06 0.18
Matches are distributed among these distances:
42 6 0.07
43 1 0.01
44 14 0.17
45 2 0.02
46 11 0.13
47 2 0.02
48 4 0.05
49 19 0.23
50 11 0.13
51 13 0.16
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.01
Consensus pattern (50 bp):
AAAGAAAAACAAAGAGAAAAGACAAAGATAAAAGAGAAAAGAAGTAAAGA
Found at i:7997401 original size:56 final size:55
Alignment explanation
Indices: 7997303--7997467 Score: 119
Period size: 56 Copynumber: 2.9 Consensus size: 55
7997293 AAAGCAAAGC
* *
7997303 AAAGAGAAAAAAGAAAAAAA-ATAGAGAGCAAAG-AAAAA-CAAAGAGAAAAGAAAAA
1 AAAGAG-AAAAAGAAAAAAAGA-AAAGA-AAAAGAAAAAAGCAAAGAGAAAAGAAAAA
* *
7997358 CAAAGAGAAAAGAGAAAAAAAGAAAAGAAAAA-AAAAGAGCAAAGATAAAAGAGAAAA
1 -AAAGAGAAAA-AGAAAAAAAGAAAAGAAAAAGAAAAAAGCAAAGAGAAAAGA-AAAA
* * * *
7997415 GAAGTA-AAGAAA-AAAAAAACAAAGAGAAAAAAGAAGAAAGAAAAGA-AAAAGAA
1 AAAG-AGAA-AAAGAAAAAAAGAAA-AG-AAAAAGAAAAAAGCAAAGAGAAAAGAA
7997468 GAAAGAAAAT
Statistics
Matches: 90, Mismatches: 9, Indels: 20
0.76 0.08 0.17
Matches are distributed among these distances:
55 21 0.23
56 40 0.44
57 19 0.21
58 10 0.11
ACGTcount: A:0.76, C:0.03, G:0.19, T:0.02
Consensus pattern (55 bp):
AAAGAGAAAAAGAAAAAAAGAAAAGAAAAAGAAAAAAGCAAAGAGAAAAGAAAAA
Found at i:7997441 original size:30 final size:30
Alignment explanation
Indices: 7997405--7997464 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
7997395 AGCAAAGATA
7997405 AAAGAG-AAAAGAAGTAAAGAAAAAAAAAAC
1 AAAGAGAAAAAGAAG-AAAGAAAAAAAAAAC
*
7997435 AAAGAGAAAAAAGAAGAAAGAAAAGAAAAA
1 AAAGAG-AAAAAGAAGAAAGAAAAAAAAAA
7997465 GAAGAAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 6 0.22
31 13 0.48
32 8 0.30
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (30 bp):
AAAGAGAAAAAGAAGAAAGAAAAAAAAAAC
Found at i:7997464 original size:32 final size:31
Alignment explanation
Indices: 7997311--7997464 Score: 95
Period size: 32 Copynumber: 4.9 Consensus size: 31
7997301 GCAAAGAGAA
* * *
7997311 AAAAGAAAAAAAATAGAGAGCAAAG-AAAAA-
1 AAAAGAAAAAAGA-AGAAAGAAAAGAAAAAAG
* * * *
7997341 CAAAGAGAAAAGAA-AAACAAAGAGAAAAGAG
1 AAAAGAAAAAAGAAGAAAGAAA-AGAAAAAAG
* * *
7997372 AAAAAAAGAAAAGAA-AAA-AAAAGAGCAAAGAT
1 AAAAGAA-AAAAGAAGAAAGAAAAGA--AAAAAG
* *
7997404 AAAAGAGAAAAGAAGTAAAGAAAA-AAAAAAC
1 AAAAGAAAAAAGAAG-AAAGAAAAGAAAAAAG
7997435 AAAGAGAAAAAAGAAGAAAGAAAAGAAAAA
1 AAA-AGAAAAAAGAAGAAAGAAAAGAAAAA
7997465 GAAGAAAGAA
Statistics
Matches: 97, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
28 4 0.04
29 3 0.03
30 17 0.18
31 29 0.30
32 36 0.37
33 4 0.04
34 4 0.04
ACGTcount: A:0.77, C:0.03, G:0.18, T:0.02
Consensus pattern (31 bp):
AAAAGAAAAAAGAAGAAAGAAAAGAAAAAAG
Found at i:7997475 original size:32 final size:30
Alignment explanation
Indices: 7997342--7997476 Score: 112
Period size: 32 Copynumber: 4.3 Consensus size: 30
7997332 AAAGAAAAAC
* *
7997342 AAAGAGAAAAGAAAAACAAAGAGAAAAGAGAA
1 AAAGAAAAAAGAAAAAGAAA-AGAAAA-AGAA
*
7997374 AAA-AAGAAAAGAAAAA-AAAAGAGCAAAGATA
1 AAAGAA-AAAAGAAAAAGAAAAGA-AAAAGA-A
* * *
7997405 AAAGAGAAAAGAAGTAAAGAAAAAAAAAACAA
1 AAAGAAAAAAGAA--AAAGAAAAGAAAAAGAA
*
7997437 AGAGAAAAAAGAAGAAAGAAAAGAAAAAGAA
1 AAAGAAAAAAGAA-AAAGAAAAGAAAAAGAA
7997468 GAAAGAAAA
1 -AAAGAAAA
7997477 TGTATCAAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
30 6 0.07
31 32 0.39
32 33 0.40
33 7 0.08
34 5 0.06
ACGTcount: A:0.77, C:0.02, G:0.19, T:0.01
Consensus pattern (30 bp):
AAAGAAAAAAGAAAAAGAAAAGAAAAAGAA
Found at i:8001987 original size:37 final size:37
Alignment explanation
Indices: 8001896--8002091 Score: 243
Period size: 37 Copynumber: 5.4 Consensus size: 37
8001886 CAAATTTTGC
* * *
8001896 CTCGCTTGAGACAATTTCTCTTGAAAA-AAATTTTAT
1 CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
* ** *
8001932 CTCACTTGAGATTA-TTTTCTTAAAAACAAATTTTAT
1 CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
* * *
8001968 CTCGCATGAGACAGTTTTTCTTAAAAACAAATTTCGT
1 CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
* * *
8002005 CTTGCCTGAGACAATTTTTCTTAAAAACAAATTTCGT
1 CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
*
8002042 CTCGCTTGAGACAATTTTTCTTAAAAATAAATTTCAT
1 CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
*
8002079 CTCACTTGAGACA
1 CTCGCTTGAGACA
8002092 GTTTCCCCTA
Statistics
Matches: 138, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
35 10 0.07
36 29 0.21
37 99 0.72
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (37 bp):
CTCGCTTGAGACAATTTTTCTTAAAAACAAATTTCAT
Found at i:8002308 original size:105 final size:99
Alignment explanation
Indices: 8002065--8002342 Score: 247
Period size: 99 Copynumber: 2.7 Consensus size: 99
8002055 ATTTTTCTTA
* * * * * * ** *
8002065 AAAATAAATTTCATCTCACTTGAGACAGTTTCCCCTAGAAA-TAAAACTTTTAAAATTGTTTCAC
1 AAAACAAATTTCGTCTCACTTAAGACAATTTTCCCT-GAAACAAAAAAATTTGAAATTGTTTCAC
* **
8002129 TTGAAACAAAATTTATCTCACTTGAGATTATTCTC
65 TTGAAACAAAATTGATAACACTTGAGATTATTCTC
8002164 AAAACAAATTTCGTCTCACTTAAGACAATTTTCCCTGAAAACAAAAAAATTTGGAAATTGTTTCA
1 AAAACAAATTTCGTCTCACTTAAGACAATTTTCCCTG-AAACAAAAAAATTT-GAAATTGTTTCA
*
8002229 CTTGAAACAAAATTGATAA-ACCTTTGAGATTGTTTCTC
64 CTTGAAACAAAATTGATAACA-C-TTGAGATT-ATTCTC
* * * * * * * ** *
8002267 TTGAAACAAATTTTGTCTCGCTTGAGAC-AGTTTCTCTTGAAACATAAACCTTTGAGATTGTTTC
1 --AAAACAAATTTCGTCTCACTTAAGACAATTTTC-CCTGAAACAAAAAAATTTGAAATTGTTTC
8002331 ACTTGAAACAAA
63 ACTTGAAACAAA
8002343 CTTTGTCTCG
Statistics
Matches: 147, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
98 1 0.01
99 34 0.23
100 8 0.05
101 28 0.19
102 8 0.05
103 27 0.18
104 16 0.11
105 25 0.17
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (99 bp):
AAAACAAATTTCGTCTCACTTAAGACAATTTTCCCTGAAACAAAAAAATTTGAAATTGTTTCACT
TGAAACAAAATTGATAACACTTGAGATTATTCTC
Found at i:8002316 original size:66 final size:66
Alignment explanation
Indices: 8002244--8002442 Score: 346
Period size: 66 Copynumber: 3.0 Consensus size: 66
8002234 AACAAAATTG
*
8002244 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
1 ATAAACCTTTGAGATTGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
8002309 C
66 C
* *
8002310 ATAAACCTTTGAGATTGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAAA
1 ATAAACCTTTGAGATTGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
8002375 C
66 C
*
8002376 ATAAACCTTTGAGATTGTTTCCCTTGAAA-AAATTTTTGTCTCGCTTGAGACAGTTTCTCTTGAA
1 ATAAACCTTTGAGATTGTTTCACTTGAAACAAA-TTTTGTCTCGCTTGAGACAGTTTCTCTTGAA
8002440 AC
65 AC
8002442 A
1 A
8002443 AATTTTGCCT
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
65 3 0.02
66 123 0.98
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (66 bp):
ATAAACCTTTGAGATTGTTTCACTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
C
Found at i:8002330 original size:30 final size:30
Alignment explanation
Indices: 8002296--8002404 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
8002286 GCTTGAGACA
8002296 GTTTCTCTTGAAACATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
* **
8002326 GTTTCACTTGAAAC--AAACTTTGTCTCGCTTGAGACA
1 GTTTCTCTTGAAACATAAAC-----CT---TTGAGATT
*
8002362 GTTTCTCTTAAAACATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
*
8002392 GTTTCCCTTGAAA
1 GTTTCTCTTGAAA
8002405 AAATTTTTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
28 4 0.07
30 30 0.50
33 4 0.07
36 18 0.30
38 4 0.07
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (30 bp):
GTTTCTCTTGAAACATAAACCTTTGAGATT
Found at i:8002424 original size:102 final size:102
Alignment explanation
Indices: 8002326--8002542 Score: 330
Period size: 102 Copynumber: 2.1 Consensus size: 102
8002316 CTTTGAGATT
* * *
8002326 GTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTT-AAAACATAAACCTTTGAGA
1 GTTTCTCTTGAAACAAACTTTGCCTCACTTGAGACAGTTTCTCTTGAAAA-ATAAACCTTTGAGA
* *
8002390 TTGTTTCCCTTGAAA-AAATTTTTGTCTCGCTTGAGACA
65 TTGTTTCCCTTGAAACAAA-TTTTATCTCACTTGAGACA
* *
8002428 GTTTCTCTTGAAACAAATTTTGCCTCACTTGAGACCGTTTCTCTTGAAAAATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAACTTTGCCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
*
8002493 TGTTTCTCTTGAAACAAATTTTATCTCACTTGAGACA
66 TGTTTCCCTTGAAACAAATTTTATCTCACTTGAGACA
8002530 GTTTCTCTTGAAA
1 GTTTCTCTTGAAA
8002543 TATAAACCTT
Statistics
Matches: 105, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
102 98 0.93
103 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (102 bp):
GTTTCTCTTGAAACAAACTTTGCCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
TGTTTCCCTTGAAACAAATTTTATCTCACTTGAGACA
Found at i:8002434 original size:168 final size:168
Alignment explanation
Indices: 8002260--8002814 Score: 721
Period size: 168 Copynumber: 3.3 Consensus size: 168
8002250 CTTTGAGATT
*
8002260 GTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
* * * *
8002325 TGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAAACATAAACCTTTGAGA
66 TGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGA
8002390 TTGTTTCCCTTGAAAAAATTTTTGTCTCGCTTGAGACA
131 TTGTTTCCCTTGAAAAAATTTTTGTCTCGCTTGAGACA
* * *
8002428 GTTTCTCTTGAAACAAATTTTGCCTCACTTGAGACCGTTTCTCTTGAAAAATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
* *
8002493 TGTTTCTCTTGAAACAAATTTTATCTCACTTGAGACAGTTTCTCTTGAAATATAAACCTTTGAGA
66 TGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGA
*
8002558 TTGTTTCTCTTGAAACAAA-TTTTGTCTCGCTTGAGACA
131 TTGTTTCCCTTGAAA-AAATTTTTGTCTCGCTTGAGACA
* * ** * ***
8002596 GTTTCTCTTGAAACATAA-----AC-C-TTTGAGATTGTTTCCCTTGAAACATTTTTTCTCTTGC
1 GTTTCTCTTGAAACA-AATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACA--TAAAC-C-T--
** *
8002654 TTGAGACAGTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACC
59 TTGAGATTGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACC
* *
8002719 TTTGAGATTGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACA
124 TTTGAGATTGTTTCCCTTGAAAAAATTTTTGTCTCGCTTGAGACA
* ** * *
8002764 GTTTCTTTTGAAACAAATTTCATCTCACTTGAGATAATTTCTCTTGAAACA
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACA
8002815 AAATTAACCT
Statistics
Matches: 337, Mismatches: 34, Indels: 26
0.85 0.09 0.07
Matches are distributed among these distances:
162 19 0.06
163 1 0.00
164 3 0.01
165 1 0.00
166 1 0.00
167 4 0.01
168 281 0.83
169 5 0.01
172 1 0.00
173 1 0.00
174 20 0.06
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (168 bp):
GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
TGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGA
TTGTTTCCCTTGAAAAAATTTTTGTCTCGCTTGAGACA
Found at i:8002490 original size:66 final size:66
Alignment explanation
Indices: 8002428--8002674 Score: 377
Period size: 66 Copynumber: 3.7 Consensus size: 66
8002418 GCTTGAGACA
* *
8002428 GTTTCTCTTGAAACAAATTTTGCCTCACTTGAGACCGTTTCTCTTGAAAAATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
8002493 T
66 T
* *
8002494 GTTTCTCTTGAAACAAATTTTATCTCACTTGAGACAGTTTCTCTTGAAATATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
8002559 T
66 T
* *
8002560 GTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
8002625 T
66 T
* ** * ** *
8002626 GTTTCCCTTGAAACATTTTTTCTCTTGCTTGAGACAGTTTCTTTTGAAA
1 GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAA
8002675 CAAATTTTAT
Statistics
Matches: 168, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 168 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (66 bp):
GTTTCTCTTGAAACAAATTTTGTCTCACTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGAT
T
Found at i:8002501 original size:234 final size:234
Alignment explanation
Indices: 8002244--8002778 Score: 890
Period size: 234 Copynumber: 2.3 Consensus size: 234
8002234 AACAAAATTG
*
8002244 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAA
1 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAA
8002309 CATAAACCTTTGAGATTGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAA
66 CATAAACCTTTGAGATTGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAA
*
8002374 ACATAAACCTTTGAGATTGTTTCCCTTGAAAAAATTTTTGTCTCGCTTGAGACAGTTTCTCTTGA
131 ACATAAACCTTTGAGATTGTTTCCCTTGAAAAAATTTTTCTCTCGCTTGAGACAGTTTCTCTTGA
* *
8002439 AACAAATTTTGCCTCACTTGAGACCGTTTCTCTTGAAAA
196 AACAAATTTTACCTCACTTGAGACAGTTTCTCTTGAAAA
*
8002478 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTATCTCACTTGAGACAGTTTCTCTTGAAA
1 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAA
* * * *
8002543 TATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAA
66 CATAAACCTTTGAGATTGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAA
* * * *
8002608 ACATAAACCTTTGAGATTGTTTCCCTTGAAACATTTTTTCTCTTGCTTGAGACAGTTTCTTTTGA
131 ACATAAACCTTTGAGATTGTTTCCCTTGAAAAAATTTTTCTCTCGCTTGAGACAGTTTCTCTTGA
* * *
8002673 AACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAAC
196 AACAAATTTTACCTCACTTGAGACAGTTTCTCTTGAAAA
* * * *
8002712 ATAAACCTTTGAGATTGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACAGTTTCTTTTGAAA
1 ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAA
8002777 CA
66 CA
8002779 AATTTCATCT
Statistics
Matches: 279, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
234 279 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.40
Consensus pattern (234 bp):
ATAAACCTTTGAGATTGTTTCTCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAA
CATAAACCTTTGAGATTGTTTCACTTGAAACAAACTTTGTCTCGCTTGAGACAGTTTCTCTTAAA
ACATAAACCTTTGAGATTGTTTCCCTTGAAAAAATTTTTCTCTCGCTTGAGACAGTTTCTCTTGA
AACAAATTTTACCTCACTTGAGACAGTTTCTCTTGAAAA
Found at i:8002639 original size:30 final size:30
Alignment explanation
Indices: 8002464--8002641 Score: 126
Period size: 30 Copynumber: 5.5 Consensus size: 30
8002454 ACTTGAGACC
*
8002464 GTTTCTCTTGAAAAATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
* **
8002494 GTTTCTCTTGAAACA-AATTTTATCTCACTTGAGACA
1 GTTTCTCTTGAAACATAA----A-C-C-TTTGAGATT
*
8002530 GTTTCTCTTGAAATATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
* * **
8002560 GTTTCTCTTGAAACA-AATTTTGTCTCGCTTGAGACA
1 GTTTCTCTTGAAACATAA-----AC-C-TTTGAGATT
8002596 GTTTCTCTTGAAACATAAACCTTTGAGATT
1 GTTTCTCTTGAAACATAAACCTTTGAGATT
*
8002626 GTTTCCCTTGAAACAT
1 GTTTCTCTTGAAACAT
8002642 TTTTTCTCTT
Statistics
Matches: 114, Mismatches: 18, Indels: 32
0.70 0.11 0.20
Matches are distributed among these distances:
29 4 0.04
30 55 0.48
31 2 0.02
32 2 0.02
33 2 0.02
34 2 0.02
35 2 0.02
36 41 0.36
37 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (30 bp):
GTTTCTCTTGAAACATAAACCTTTGAGATT
Found at i:8002666 original size:102 final size:102
Alignment explanation
Indices: 8002560--8002814 Score: 438
Period size: 102 Copynumber: 2.5 Consensus size: 102
8002550 CTTTGAGATT
* *
8002560 GTTTCTCTTGAAACAAATTTTGTCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
1 GTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
* *
8002625 TGTTTCCCTTGAAACATTTTTTCTCTTGCTTGAGACA
66 TGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACA
8002662 GTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
1 GTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
8002727 TGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACA
66 TGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACA
* * * *
8002764 GTTTCTTTTGAAACAAATTTCATCTCACTTGAGATAATTTCTCTTGAAACA
1 GTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACA
8002815 AAATTAACCT
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 145 1.00
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (102 bp):
GTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACCTTTGAGAT
TGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACA
Found at i:8002724 original size:66 final size:66
Alignment explanation
Indices: 8002654--8002778 Score: 187
Period size: 66 Copynumber: 1.9 Consensus size: 66
8002644 TTTCTCTTGC
**
8002654 TTGAGACAGTTTCTTTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACC
1 TTGAGACAGTTTCCCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACC
8002719 T
66 T
** * * *
8002720 TTGAGATTGTTTCCCTTGAAACAATTTTTCTCTCGCTTGAGACAGTTTCTTTTGAAACA
1 TTGAGACAGTTTCCCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACA
8002779 AATTTCATCT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 52 1.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.40
Consensus pattern (66 bp):
TTGAGACAGTTTCCCTTGAAACAAATTTTATCTCGCTTGAGACAGTTTCTCTTGAAACATAAACC
T
Found at i:8003118 original size:138 final size:139
Alignment explanation
Indices: 8002835--8003124 Score: 348
Period size: 138 Copynumber: 2.1 Consensus size: 139
8002825 CACTTGAGAT
* * * **
8002835 TGTTGTCTCCAAATTATCCCTAAATACGGCTAGATGTCCTCATCACATAGGAACAATGTCATCCA
1 TGTTGTCTCCAAATTATCCCAAAAGACGGCTAGACGTCAACATCACATAGGAACAATGTCATCCA
* * ** ** * * *
8002900 CCAACCATATATTCTCAATGCGTAGGAGCTGCGTCATCCTCAGGTAATCATACTTCCTCATCACG
66 CCAACCAGATATCCTCAACACGTAGGAGCAACGTCATCCTCAGATAACCAGACTTCCTCATCACG
8002965 TAGAAACCG
131 TAGAAACCG
* * * *
8002974 TATTGTCTCCAAATTATCCCAAAAGA-GGCTAGACGTCAACGTCACGTAGGAATAATGTCATCCA
1 TGTTGTCTCCAAATTATCCCAAAAGACGGCTAGACGTCAACATCACATAGGAACAATGTCATCCA
* * * * *
8003038 CCGACCAGATCTCCTCAACACGTAGGAGCAATGTCATCCTCAGATAACCAGACTTCTTGATCACG
66 CCAACCAGATATCCTCAACACGTAGGAGCAACGTCATCCTCAGATAACCAGACTTCCTCATCACG
* *
8003103 TAGGAATCG
131 TAGAAACCG
8003112 TGTTGTCTCCAAA
1 TGTTGTCTCCAAA
8003125 ATCATCTACA
Statistics
Matches: 125, Mismatches: 26, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
138 102 0.82
139 23 0.18
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (139 bp):
TGTTGTCTCCAAATTATCCCAAAAGACGGCTAGACGTCAACATCACATAGGAACAATGTCATCCA
CCAACCAGATATCCTCAACACGTAGGAGCAACGTCATCCTCAGATAACCAGACTTCCTCATCACG
TAGAAACCG
Found at i:8004368 original size:2 final size:2
Alignment explanation
Indices: 8004361--8004393 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8004351 TCATGAGAGT
8004361 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8004394 ATCCTTCAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8007369 original size:2 final size:2
Alignment explanation
Indices: 8007362--8007416 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
8007352 TTATCATAAC
8007362 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8007404 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
8007417 CGCTGCCTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8007550 original size:36 final size:37
Alignment explanation
Indices: 8007476--8007630 Score: 206
Period size: 36 Copynumber: 4.2 Consensus size: 37
8007466 TAATAAATAC
* **
8007476 ATAATATATAGTTTTGAAAACATTTCCAAAAATATAT
1 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
*** *
8007513 ATAATATATAATTTTG-AATTTTTTTTAAAAATATAT
1 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
8007549 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
1 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
* * *
8007586 ATAATATAT-AGTTTGAAAGCATTTTAAAAAATATAA
1 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
8007622 ATAATATAT
1 ATAATATAT
8007631 GGTTAAAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
36 64 0.62
37 40 0.38
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (37 bp):
ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
Found at i:8007582 original size:73 final size:73
Alignment explanation
Indices: 8007476--8007630 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 73
8007466 TAATAAATAC
* * * *** *
8007476 ATAATATATAGTTTTGAAAACATTTCCAAAAATATATATAATATATAATTTTG-AATTTTTTTTA
1 ATAATATATAATTTTGAAAACATTTCAAAAAATATATATAATATAT-AGTTTGAAAGCATTTTAA
*
8007540 AAAATATAT
65 AAAATATAA
*
8007549 ATAATATATAATTTTGAAAACATTTTAAAAAATATATATAATATATAGTTTGAAAGCATTTTAAA
1 ATAATATATAATTTTGAAAACATTTCAAAAAATATATATAATATATAGTTTGAAAGCATTTTAAA
8007614 AAATATAA
66 AAATATAA
8007622 ATAATATAT
1 ATAATATAT
8007631 GGTTAAAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
72 5 0.07
73 67 0.93
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (73 bp):
ATAATATATAATTTTGAAAACATTTCAAAAAATATATATAATATATAGTTTGAAAGCATTTTAAA
AAATATAA
Found at i:8007696 original size:79 final size:76
Alignment explanation
Indices: 8007575--8007746 Score: 188
Period size: 79 Copynumber: 2.2 Consensus size: 76
8007565 AAAACATTTT
* *
8007575 AAAAAATATATATA-ATATATAGTTTGAAAGCATTTTAAAAAATATAAATAATATATGGTTAAAA
1 AAAATATATATATATATATATAGTTTGAAAGCATTTTAAAAAATATAAATAATATATAGTT-AAA
8007639 AAAGGTTTTT-G
65 AAAGGTTTTTGG
* * ** ** *
8007650 AATATATATATATATATAATATAGTTTTGAAATCATTTTTTGAAAATATGTATAATATATAGTTT
1 AAAATATATATATATAT-ATATAG-TTTGAAAGCA-TTTTAAAAAATATAAATAATATATAGTTA
* *
8007715 TAAGAGGTTTTTGG
63 AAAAAGGTTTTTGG
8007729 AAAATATATATA-ATATAT
1 AAAATATATATATATATAT
8007747 TTTAGAAAAC
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
75 12 0.15
76 2 0.03
77 8 0.10
78 23 0.29
79 35 0.44
ACGTcount: A:0.47, C:0.01, G:0.10, T:0.41
Consensus pattern (76 bp):
AAAATATATATATATATATATAGTTTGAAAGCATTTTAAAAAATATAAATAATATATAGTTAAAA
AAGGTTTTTGG
Found at i:8007726 original size:36 final size:35
Alignment explanation
Indices: 8007476--8007746 Score: 182
Period size: 37 Copynumber: 7.3 Consensus size: 35
8007466 TAATAAATAC
* **
8007476 ATAATATATAGTTTTGAAAACATTTCCAAAAATATAT
1 ATAATATATAGTTTT--AAAGATTTTTAAAAATATAT
* ***
8007513 ATAATATATAATTTTGAATTTTTTTTAAAAATATAT
1 ATAATATATAGTTTT-AAAGATTTTTAAAAATATAT
* * *
8007549 ATAATATATAATTTTGAAAACATTTTAAAAAATATAT
1 ATAATATATAGTTTT--AAAGATTTTTAAAAATATAT
* * *
8007586 ATAATATATAGTTTGAAAGCATTTTAAAAAATATAA
1 ATAATATATAGTTTTAAAG-ATTTTTAAAAATATAT
* ** * *
8007622 ATAATATATGGTTAAAAAAAGGTTTTTGAATATATATAT
1 ATAATATATAGTT--TTAAAGATTTTT-AA-AAATATAT
* * *
8007661 ATATATAATATAGTTTTGAAATCATTTTTTGAAAATATGT
1 ATA-AT-ATATAGTTTT-AAA-GA-TTTTTAAAAATATAT
* *
8007701 ATAATATATAGTTTTAAGAGGTTTTTGGAAAATATAT
1 ATAATATATAGTTTTAA-AGATTTTT-AAAAATATAT
8007738 ATAATATAT
1 ATAATATAT
8007747 TTTAGAAAAC
Statistics
Matches: 187, Mismatches: 34, Indels: 26
0.76 0.14 0.11
Matches are distributed among these distances:
35 3 0.02
36 62 0.33
37 67 0.36
38 17 0.09
39 11 0.06
40 14 0.07
41 8 0.04
42 5 0.03
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (35 bp):
ATAATATATAGTTTTAAAGATTTTTAAAAATATAT
Found at i:8007848 original size:12 final size:12
Alignment explanation
Indices: 8007810--8007870 Score: 65
Period size: 12 Copynumber: 5.2 Consensus size: 12
8007800 TTTTTGTTTA
8007810 TTTTATTTCTA-
1 TTTTATTTCTAT
*
8007821 -TTTATTTAT-T
1 TTTTATTTCTAT
8007831 TATTTATTTCTAT
1 T-TTTATTTCTAT
*
8007844 TTTTATTTTTAT
1 TTTTATTTCTAT
*
8007856 TTTTATTTCCAT
1 TTTTATTTCTAT
8007868 TTT
1 TTT
8007871 AAGTTCAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
10 8 0.20
12 31 0.76
13 2 0.05
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTATTTCTAT
Found at i:8007850 original size:6 final size:6
Alignment explanation
Indices: 8007806--8007863 Score: 55
Period size: 6 Copynumber: 9.2 Consensus size: 6
8007796 TACATTTTTG
* *
8007806 TTTA-T TTTATT TCTATTT ATTTATTT ATTTATT TCTATT TTTATT TTTATT
1 TTTATT TTTATT TTTA-TT -TTTA-TT -TTTATT TTTATT TTTATT TTTATT
8007857 TTTATT T
1 TTTATT T
8007864 CCATTTTAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
5 4 0.09
6 27 0.59
7 4 0.09
8 11 0.24
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:8017607 original size:35 final size:36
Alignment explanation
Indices: 8017525--8017724 Score: 199
Period size: 37 Copynumber: 5.4 Consensus size: 36
8017515 TTTAATATAT
*
8017525 ATATATATATAATATAGTTTTGAAAACATTTTCAAATA
1 ATATATATAT-ATATAGTTTTGAAAACATTTTTAAA-A
*
8017563 TATAAATATATATAATATAGTTTTGAAAACATTTTTGAAA
1 -AT--ATATATAT-ATATAGTTTTGAAAACATTTTTAAAA
* *
8017603 ATATATATAATATATAATTTTGAAAACATTTTAAAAA
1 ATATATAT-ATATATAGTTTTGAAAACATTTTTAAAA
*
8017640 ATATATATAATATATAGTTTTGAAAAC-GTTTTAAAA
1 ATATATAT-ATATATAGTTTTGAAAACATTTTTAAAA
* *** * * *
8017676 A-ATATA-ATATATGGTTAAAAAAACGTTTTTGAAT
1 ATATATATATATATAGTTTTGAAAACATTTTTAAAA
8017710 ATATATATATATATA
1 ATATATATATATATA
8017725 TATATATAAT
Statistics
Matches: 139, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
33 14 0.10
34 7 0.05
35 10 0.07
36 14 0.10
37 55 0.40
38 2 0.01
39 4 0.03
40 1 0.01
41 32 0.23
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (36 bp):
ATATATATATATATAGTTTTGAAAACATTTTTAAAA
Done.