Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 62
Found at i:8207315 original size:2 final size:2
Alignment explanation
Indices: 8207308--8207357 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
8207298 CTTTTAAAAC
8207308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8207350 AT AT AT AT
1 AT AT AT AT
8207358 TAAAACATGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8207571 original size:24 final size:24
Alignment explanation
Indices: 8207544--8207637 Score: 73
Period size: 24 Copynumber: 3.9 Consensus size: 24
8207534 AAATGAACAT
*
8207544 AGAATTCAAATCAGATATCAGAAC
1 AGAATTCAAATCAGAAATCAGAAC
* **
8207568 AGAATCCAAATCAGAAAAAAGAAC
1 AGAATTCAAATCAGAAATCAGAAC
* ** * *
8207592 ATAATTCAGGTCATG-TATCATAAC
1 AGAATTCAAATCA-GAAATCAGAAC
* *
8207616 ATAATTCAAATCGGAAATCAGA
1 AGAATTCAAATCAGAAATCAGA
8207638 TAAAATATTT
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
23 1 0.02
24 49 0.96
25 1 0.02
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (24 bp):
AGAATTCAAATCAGAAATCAGAAC
Found at i:8207989 original size:27 final size:27
Alignment explanation
Indices: 8207959--8208019 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
8207949 ATTCTTATCC
8207959 ATAGATCATCTTCAAAATCATCACTGA
1 ATAGATCATCTTCAAAATCATCACTGA
*
8207986 ATAGATCATCTTCAGAATCATCACTGA
1 ATAGATCATCTTCAAAATCATCACTGA
8208013 ATAGATC
1 ATAGATC
8208020 TTAAGGAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
ATAGATCATCTTCAAAATCATCACTGA
Found at i:8211662 original size:21 final size:21
Alignment explanation
Indices: 8211607--8211664 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
8211597 ATTTACCGTG
*
8211607 ATTGCGGCCGTCGCGGACGCT
1 ATTGCGGCCTTCGCGGACGCT
* ** *
8211628 ATTAC-AACTGTCGCGGATGCT
1 ATTGCGGCCT-TCGCGGACGCT
8211649 ATTGCGGCCTTCGCGG
1 ATTGCGGCCTTCGCGG
8211665 GTAACTCGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
20 1 0.04
21 24 0.89
22 2 0.07
ACGTcount: A:0.14, C:0.29, G:0.33, T:0.24
Consensus pattern (21 bp):
ATTGCGGCCTTCGCGGACGCT
Found at i:8214081 original size:21 final size:21
Alignment explanation
Indices: 8214052--8214103 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
8214042 CACCGCCAGT
*
8214052 GATTATTTCCACTCCCAACGG
1 GATTGTTTCCACTCCCAACGG
*
8214073 GATTGTTTCCACTCTCAACGG
1 GATTGTTTCCACTCCCAACGG
*
8214094 GGTTGTTTCC
1 GATTGTTTCC
8214104 CTCTTTCCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.17, C:0.29, G:0.19, T:0.35
Consensus pattern (21 bp):
GATTGTTTCCACTCCCAACGG
Found at i:8214472 original size:22 final size:24
Alignment explanation
Indices: 8214427--8214487 Score: 81
Period size: 22 Copynumber: 2.6 Consensus size: 24
8214417 TAATAATAAT
8214427 AACTATATATATTATATTTGCAAA
1 AACTATATATATTATATTTGCAAA
* *
8214451 AACTATATA-ATT-TGTTTTCAAA
1 AACTATATATATTATATTTGCAAA
*
8214473 AATTATATATATTAT
1 AACTATATATATTAT
8214488 TATATTTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 16 0.50
23 6 0.19
24 10 0.31
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (24 bp):
AACTATATATATTATATTTGCAAA
Found at i:8214588 original size:35 final size:37
Alignment explanation
Indices: 8214485--8214635 Score: 173
Period size: 33 Copynumber: 4.4 Consensus size: 37
8214475 TTATATATAT
*
8214485 TATTATA--TTTTCAAAAATCGTTTTCAAAAACC--A
1 TATTATACGTTTTCAAAAATCGTTTTAAAAAACCATA
8214518 TATTATACG--TTCAAAAATCGTTTTAAAAAA-C--A
1 TATTATACGTTTTCAAAAATCGTTTTAAAAAACCATA
*
8214550 TATTATACGTTTTCCAAAAT-GTTTT-AAAAACCATA
1 TATTATACGTTTTCAAAAATCGTTTTAAAAAACCATA
*
8214585 TATTATACGTTTTCAAAACT-GTTTCTTAAAAAACCATA
1 TATTATACGTTTTCAAAAATCG-TT-TTAAAAAACCATA
8214623 TATTATACGTTTT
1 TATTATACGTTTT
8214636 TGAAACCGTT
Statistics
Matches: 104, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
32 16 0.15
33 33 0.32
34 8 0.08
35 20 0.19
36 2 0.02
37 2 0.02
38 23 0.22
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.40
Consensus pattern (37 bp):
TATTATACGTTTTCAAAAATCGTTTTAAAAAACCATA
Found at i:8214654 original size:38 final size:38
Alignment explanation
Indices: 8214549--8214678 Score: 126
Period size: 38 Copynumber: 3.5 Consensus size: 38
8214539 TTTAAAAAAC
*
8214549 ATATTATACGTTTTCCAAAA-TG-TT-TT-AAAAACCAT
1 ATATTATACGTTTT-CAAAACCGTTTCTTAAAAAACCAT
*
8214584 ATATTATACGTTTTCAAAACTGTTTCTTAAAAAACCAT
1 ATATTATACGTTTTCAAAACCGTTTCTTAAAAAACCAT
** * *
8214622 ATATTATACGTTTTTGAAACCGTTT-TTCAAAAACTAT
1 ATATTATACGTTTTCAAAACCGTTTCTTAAAAAACCAT
* * *
8214659 ACATTCTACCTTTTCGAAAA
1 ATATTATACGTTTTC-AAAA
8214679 TACGTTCTCA
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
34 5 0.06
35 16 0.20
36 2 0.03
37 23 0.29
38 34 0.43
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (38 bp):
ATATTATACGTTTTCAAAACCGTTTCTTAAAAAACCAT
Found at i:8217604 original size:45 final size:46
Alignment explanation
Indices: 8217555--8217642 Score: 133
Period size: 45 Copynumber: 1.9 Consensus size: 46
8217545 GAACATCGAA
* * *
8217555 TGCATTTTATGCATCGATGCAC-ATACCATGCATTGATGCACTTAG
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
*
8217600 TGCATTTGATGCATCGATGCACAAGACTATGCATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACT
8217643 CAGGCTATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
45 21 0.55
46 17 0.45
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (46 bp):
TGCATTTGATGCATCGATGCACAAGACCATGCATCGATGCACTTAG
Found at i:8219654 original size:22 final size:21
Alignment explanation
Indices: 8219630--8219669 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8219620 GAGAAATTGT
8219630 TTTTAAAATAT-AAAAATGATA
1 TTTTAAAAT-TGAAAAATGATA
8219651 TTTTAAAATTGAAAAATGA
1 TTTTAAAATTGAAAAATGA
8219670 AAATAAACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTTAAAATTGAAAAATGATA
Found at i:8223521 original size:24 final size:24
Alignment explanation
Indices: 8223494--8223574 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
8223484 ACACTTAACA
8223494 GTGCATCGATGCATCCCTTTGAAT
1 GTGCATCGATGCATCCCTTTGAAT
* *
8223518 GTGCATCGATTCAT-CATGTTG-A-
1 GTGCATCGATGCATCCCT-TTGAAT
*
8223540 -TGCACCGATGCA-CACC-TTGAAT
1 GTGCATCGATGCATC-CCTTTGAAT
8223562 GTGCATCGATGCA
1 GTGCATCGATGCA
8223575 CAAGGTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
20 3 0.07
21 11 0.24
22 1 0.02
23 14 0.31
24 16 0.36
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (24 bp):
GTGCATCGATGCATCCCTTTGAAT
Found at i:8225151 original size:21 final size:21
Alignment explanation
Indices: 8225109--8225152 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8225099 ACTCTGGGAG
* *
8225109 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
8225130 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
8225151 CT
1 CT
8225153 CCTCCTTCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:8231462 original size:19 final size:19
Alignment explanation
Indices: 8231438--8231483 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
8231428 AATAACACTT
8231438 CCCACTTCCA-ACAACGTGC
1 CCCACTTCCAGA-AACGTGC
8231457 CCCACTTCCAGAAACGTGC
1 CCCACTTCCAGAAACGTGC
8231476 CCCACTTC
1 CCCACTTC
8231484 ATGAGCACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 25 0.96
20 1 0.04
ACGTcount: A:0.24, C:0.48, G:0.11, T:0.17
Consensus pattern (19 bp):
CCCACTTCCAGAAACGTGC
Found at i:8236284 original size:25 final size:25
Alignment explanation
Indices: 8236254--8236310 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
8236244 GTATGTGTAT
*
8236254 TATGTTACATAATATTTACATATTA
1 TATGTTACATAATATATACATATTA
* *
8236279 TATGTTAGATAATATATACATATTT
1 TATGTTACATAATATATACATATTA
8236304 TATGTTA
1 TATGTTA
8236311 TAATTACATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (25 bp):
TATGTTACATAATATATACATATTA
Found at i:8236324 original size:25 final size:24
Alignment explanation
Indices: 8236253--8236331 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 24
8236243 TGTATGTGTA
**
8236253 TTATGTTACATAATATTTACATATT
1 TTATGTTA-ATAATACATACATATT
* *
8236278 ATATGTTAGATAATATATACATATT
1 TTATGTTA-ATAATACATACATATT
*
8236303 TTATGTT-ATAATTACATAACATATA
1 TTATGTTAATAA-TACAT-ACATATT
8236328 TTAT
1 TTAT
8236332 TATTATATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 4 0.09
24 4 0.09
25 38 0.83
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (24 bp):
TTATGTTAATAATACATACATATT
Found at i:8237454 original size:2 final size:2
Alignment explanation
Indices: 8237447--8237473 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8237437 TCTATTACTA
8237447 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8237474 AATTAGCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8237655 original size:9 final size:9
Alignment explanation
Indices: 8237641--8237670 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
8237631 TTAATGTTGC
8237641 TTTATTAAT
1 TTTATTAAT
8237650 TTTATTAAT
1 TTTATTAAT
8237659 TTTATTAAT
1 TTTATTAAT
8237668 TTT
1 TTT
8237671 TTTATTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTATTAAT
Found at i:8237722 original size:14 final size:14
Alignment explanation
Indices: 8237711--8237740 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8237701 CCATTTTTTC
8237711 TTTTATTATTTTAT
1 TTTTATTATTTTAT
*
8237725 TTTTATTATTTAAT
1 TTTTATTATTTTAT
8237739 TT
1 TT
8237741 ATTTAGCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTATTTTAT
Found at i:8238772 original size:12 final size:13
Alignment explanation
Indices: 8238753--8238787 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8238743 TACTCATGCA
8238753 ATTTTTTTCATTT
1 ATTTTTTTCATTT
8238766 ATTTTTTTCATTT
1 ATTTTTTTCATTT
8238779 ATTTTTTTC
1 ATTTTTTTC
8238788 TTTCATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTTTTTCATTT
Found at i:8238791 original size:17 final size:15
Alignment explanation
Indices: 8238760--8238802 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
8238750 GCAATTTTTT
8238760 TCATTTATTTTTTTCA
1 TCATTT-TTTTTTTCA
*
8238776 TTTATTTTTTTCTTTCA
1 -TCATTTTTTT-TTTCA
8238793 TCATTTTTTT
1 TCATTTTTTT
8238803 ATCTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (15 bp):
TCATTTTTTTTTTCA
Found at i:8243561 original size:24 final size:24
Alignment explanation
Indices: 8243534--8243613 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
8243524 AAATCAAAAA
* *
8243534 AGAATTCAGAACAGATATCAGAAC
1 AGAATTCAGATCAGATATCATAAC
* * *
8243558 AGAATCCAGCTCAGAAATCATAAC
1 AGAATTCAGATCAGATATCATAAC
* *
8243582 AGAATTCAGGTCATATATCATAAC
1 AGAATTCAGATCAGATATCATAAC
*
8243606 AAAATTCA
1 AGAATTCA
8243614 AGTCGGAAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.21
Consensus pattern (24 bp):
AGAATTCAGATCAGATATCATAAC
Found at i:8243625 original size:24 final size:24
Alignment explanation
Indices: 8243568--8243625 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
8243558 AGAATCCAGC
* *
8243568 TCAGAAATCATAACAGAATTCAGG
1 TCAGAAATCATAACAAAATTCAAG
* *
8243592 TCATATATCATAACAAAATTCAAG
1 TCAGAAATCATAACAAAATTCAAG
*
8243616 TCGGAAATCA
1 TCAGAAATCA
8243626 GATAAAATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.47, C:0.17, G:0.12, T:0.24
Consensus pattern (24 bp):
TCAGAAATCATAACAAAATTCAAG
Found at i:8246121 original size:23 final size:21
Alignment explanation
Indices: 8246094--8246144 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 21
8246084 CACCGGTCAA
8246094 CGGGTCAGGTAGTATCAACGGGT
1 CGGGTCAGGTAGTA--AACGGGT
8246117 CGGGTC--G-AGTAAACGGGT
1 CGGGTCAGGTAGTAAACGGGT
8246135 CGGGTCAGGT
1 CGGGTCAGGT
8246145 TGGAACCGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 13 0.52
20 5 0.20
21 1 0.04
23 6 0.24
ACGTcount: A:0.20, C:0.18, G:0.43, T:0.20
Consensus pattern (21 bp):
CGGGTCAGGTAGTAAACGGGT
Found at i:8248036 original size:2 final size:2
Alignment explanation
Indices: 8248029--8248055 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8248019 ATATCTTTTA
8248029 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8248056 CCCCCATCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8248244 original size:12 final size:12
Alignment explanation
Indices: 8248227--8248286 Score: 77
Period size: 12 Copynumber: 5.0 Consensus size: 12
8248217 TGAAAATCAA
8248227 AACAGAATTCAG
1 AACAGAATTCAG
8248239 AACAG-ATATCAG
1 AACAGAAT-TCAG
*
8248251 AACAGAATCCAG
1 AACAGAATTCAG
* *
8248263 ATCAGAAATCAG
1 AACAGAATTCAG
8248275 AACAGAATTCAG
1 AACAGAATTCAG
8248287 GTCATATATC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
11 2 0.05
12 36 0.90
13 2 0.05
ACGTcount: A:0.50, C:0.18, G:0.17, T:0.15
Consensus pattern (12 bp):
AACAGAATTCAG
Found at i:8248249 original size:24 final size:24
Alignment explanation
Indices: 8248222--8248309 Score: 113
Period size: 24 Copynumber: 3.7 Consensus size: 24
8248212 GATATTGAAA
* *
8248222 ATCAAAACAGAATTCAGAACAGAT
1 ATCAGAACAGAATTCAGATCAGAT
* *
8248246 ATCAGAACAGAATCCAGATCAGAA
1 ATCAGAACAGAATTCAGATCAGAT
* *
8248270 ATCAGAACAGAATTCAGGTCATAT
1 ATCAGAACAGAATTCAGATCAGAT
*
8248294 ATCAGAACAAAATTCA
1 ATCAGAACAGAATTCA
8248310 AGTTAGAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (24 bp):
ATCAGAACAGAATTCAGATCAGAT
Found at i:8248318 original size:48 final size:48
Alignment explanation
Indices: 8248220--8248323 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 48
8248210 GAGATATTGA
* * *
8248220 AAATCAAAACAGAATTCAGAACAGATATCAGAACAGAATCCAGATCAG
1 AAATCAGAACAGAATTCAGAACAGATATCAGAACAAAATCAAGATCAG
** * *
8248268 AAATCAGAACAGAATTCAGGTCATATATCAGAACAAAATTCAAG-TTAG
1 AAATCAGAACAGAATTCAGAACAGATATCAGAACAAAA-TCAAGATCAG
8248316 AAATCAGA
1 AAATCAGA
8248324 TAAAATATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 44 0.92
49 4 0.08
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.18
Consensus pattern (48 bp):
AAATCAGAACAGAATTCAGAACAGATATCAGAACAAAATCAAGATCAG
Found at i:8248321 original size:24 final size:24
Alignment explanation
Indices: 8248241--8248323 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
8248231 GAATTCAGAA
* * *
8248241 CAGATATCAGAACAGAA-TCCAGAT
1 CAGAAATCAGAACAAAATTCAAG-T
* *
8248265 CAGAAATCAGAACAGAATTCAGGT
1 CAGAAATCAGAACAAAATTCAAGT
* *
8248289 CATATATCAGAACAAAATTCAAGT
1 CAGAAATCAGAACAAAATTCAAGT
*
8248313 TAGAAATCAGA
1 CAGAAATCAGA
8248324 TAAAATATTT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 45 0.94
25 3 0.06
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (24 bp):
CAGAAATCAGAACAAAATTCAAGT
Found at i:8254652 original size:155 final size:155
Alignment explanation
Indices: 8254370--8254680 Score: 622
Period size: 155 Copynumber: 2.0 Consensus size: 155
8254360 GTTTCAGCTG
8254370 AGGCTGAACCCTAGCAACTGTACCTTCGGAGTAACATCTGGGAAGTTGTTAGGCTTTGTGGTCAG
1 AGGCTGAACCCTAGCAACTGTACCTTCGGAGTAACATCTGGGAAGTTGTTAGGCTTTGTGGTCAG
8254435 CAGGAAAGACATCAAAGTAAATCCCGATAAGGTTAAGGCTATCCAGAGTCTACCTCTCCCACAAA
66 CAGGAAAGACATCAAAGTAAATCCCGATAAGGTTAAGGCTATCCAGAGTCTACCTCTCCCACAAA
8254500 CACAAAAATAAGTTCAAGGTTTTTT
131 CACAAAAATAAGTTCAAGGTTTTTT
8254525 AGGCTGAACCCTAGCAACTGTACCTTCGGAGTAACATCTGGGAAGTTGTTAGGCTTTGTGGTCAG
1 AGGCTGAACCCTAGCAACTGTACCTTCGGAGTAACATCTGGGAAGTTGTTAGGCTTTGTGGTCAG
8254590 CAGGAAAGACATCAAAGTAAATCCCGATAAGGTTAAGGCTATCCAGAGTCTACCTCTCCCACAAA
66 CAGGAAAGACATCAAAGTAAATCCCGATAAGGTTAAGGCTATCCAGAGTCTACCTCTCCCACAAA
8254655 CACAAAAATAAGTTCAAGGTTTTTT
131 CACAAAAATAAGTTCAAGGTTTTTT
8254680 A
1 A
8254681 CGCAGATTGA
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 156 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (155 bp):
AGGCTGAACCCTAGCAACTGTACCTTCGGAGTAACATCTGGGAAGTTGTTAGGCTTTGTGGTCAG
CAGGAAAGACATCAAAGTAAATCCCGATAAGGTTAAGGCTATCCAGAGTCTACCTCTCCCACAAA
CACAAAAATAAGTTCAAGGTTTTTT
Found at i:8258544 original size:2 final size:2
Alignment explanation
Indices: 8258537--8258576 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
8258527 ATGTTACATA
8258537 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8258577 TATGCTATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8260990 original size:19 final size:20
Alignment explanation
Indices: 8260966--8261013 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8260956 AATGATTTTC
*
8260966 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATAAAA
* *
8260985 TTTTGAAAGCCAAAATAAAA
1 TTTTGAAAACAAAAATAAAA
8261005 TTTTGAAAA
1 TTTTGAAAA
8261014 AAGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATAAAA
Found at i:8261625 original size:18 final size:18
Alignment explanation
Indices: 8261602--8261648 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
8261592 GGTTTTAATG
8261602 CAATTGATATCTCTCTAA
1 CAATTGATATCTCTCTAA
8261620 CAATTGATATCTCTCTAA
1 CAATTGATATCTCTCTAA
8261638 CAATTGATATC
1 CAATTGATATC
8261649 AATTTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.38
Consensus pattern (18 bp):
CAATTGATATCTCTCTAA
Found at i:8262319 original size:31 final size:31
Alignment explanation
Indices: 8262252--8262311 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
8262242 CAATTTAAGG
*
8262252 CAAAATGGTTTTTGGACTTGAATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
8262283 CAAAAT-GTATTTGGACTT-AATTGAATTTA
1 CAAAATGGTATTTGGACTTGAATTGAATTTA
8262312 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (31 bp):
CAAAATGGTATTTGGACTTGAATTGAATTTA
Found at i:8262403 original size:19 final size:19
Alignment explanation
Indices: 8262374--8262425 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
8262364 AAAATGTTTT
* *
8262374 TATGAATAGTAATTTACTA
1 TATGAAAAGTAAATTACTA
*
8262393 TTTGAAAAGTAAATTACTA
1 TATGAAAAGTAAATTACTA
*
8262412 TATGAACAGTAAAT
1 TATGAAAAGTAAAT
8262426 CACTGTTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.37
Consensus pattern (19 bp):
TATGAAAAGTAAATTACTA
Found at i:8262436 original size:19 final size:19
Alignment explanation
Indices: 8262389--8262441 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
8262379 ATAGTAATTT
* *
8262389 ACTATTTGAAAAGTAAATT
1 ACTATTTGAACAGTAAATC
*
8262408 ACTATATGAACAGTAAATC
1 ACTATTTGAACAGTAAATC
*
8262427 ACTGTTTGAACAGTA
1 ACTATTTGAACAGTA
8262442 CCCCGAGGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.32
Consensus pattern (19 bp):
ACTATTTGAACAGTAAATC
Found at i:8262553 original size:21 final size:21
Alignment explanation
Indices: 8262527--8262568 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8262517 ATTTGAATAT
*
8262527 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
8262548 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
8262569 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:8263745 original size:19 final size:21
Alignment explanation
Indices: 8263723--8263802 Score: 60
Period size: 21 Copynumber: 3.9 Consensus size: 21
8263713 TTGGTGCAGA
*
8263723 GGGAATCGAT-CCCCCATGA-
1 GGGAACCGATACCCCCATGAG
* *
8263742 GGGAACCGAT-TCCCCTTGAAG
1 GGGAACCGATACCCCCATG-AG
* *
8263763 GGGAACCGATTCCCCCCA-CAG
1 GGGAACCGA-TACCCCCATGAG
*
8263784 GGGAATCGATACCCCCATG
1 GGGAACCGATACCCCCATG
8263803 GGGTTCTGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
19 15 0.32
20 8 0.17
21 19 0.40
22 1 0.02
23 4 0.09
ACGTcount: A:0.25, C:0.34, G:0.26, T:0.15
Consensus pattern (21 bp):
GGGAACCGATACCCCCATGAG
Found at i:8263785 original size:21 final size:20
Alignment explanation
Indices: 8263742--8263799 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
8263732 TCCCCCATGA
**
8263742 GGGAACCGATTCCCCTTGAAG
1 GGGAACCGATTCCCC-CCAAG
8263763 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCA-AG
* *
8263784 GGGAATCGATACCCCC
1 GGGAACCGATTCCCCC
8263800 ATGGGGTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.24, C:0.36, G:0.26, T:0.14
Consensus pattern (20 bp):
GGGAACCGATTCCCCCCAAG
Found at i:8266714 original size:11 final size:11
Alignment explanation
Indices: 8266698--8266722 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8266688 TATTTGTGAG
8266698 TGTTCTAGAAT
1 TGTTCTAGAAT
8266709 TGTTCTAGAAT
1 TGTTCTAGAAT
8266720 TGT
1 TGT
8266723 GCAAACATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (11 bp):
TGTTCTAGAAT
Found at i:8267662 original size:23 final size:24
Alignment explanation
Indices: 8267620--8267698 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 24
8267610 TTAATTTTTG
8267620 TTTTATTTAATGTTGCTTTATTAA
1 TTTTATTTAATGTTGCTTTATTAA
* * *
8267644 TTTTA-TTAATTTTGTTTTATTTTA
1 TTTTATTTAATGTTGCTTTA-TTAA
*
8267668 TCTTTATTT-AT-TT-ATTTATTTAA
1 T-TTTATTTAATGTTGCTTTA-TTAA
8267691 TTTTATTT
1 TTTTATTT
8267699 TTATTATTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
22 7 0.15
23 21 0.45
24 11 0.23
25 6 0.13
26 2 0.04
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTTATTTAATGTTGCTTTATTAA
Found at i:8267666 original size:5 final size:5
Alignment explanation
Indices: 8267643--8267727 Score: 72
Period size: 5 Copynumber: 17.2 Consensus size: 5
8267633 TGCTTTATTA
* * *
8267643 ATTTT A-TTA ATTTT GTTTT ATTTT ATCTTT A-TTT A-TTT A-TTT ATTTA
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT-TTT ATTTT ATTTT ATTTT ATTTT
8267690 ATTTT ATTTTT ATTATT ATCTTT ATTTT A-TTT ATTTT A
1 ATTTT A-TTTT ATT-TT AT-TTT ATTTT ATTTT ATTTT A
8267728 ATATCTTTTC
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
4 19 0.28
5 30 0.45
6 17 0.25
7 1 0.01
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.73
Consensus pattern (5 bp):
ATTTT
Found at i:8267678 original size:38 final size:39
Alignment explanation
Indices: 8267609--8267727 Score: 134
Period size: 38 Copynumber: 3.0 Consensus size: 39
8267599 TTTCTGTTGT
* * ** *
8267609 TTTAATTTTTGTTTTATTTAATGTTGCTTTATTAATTTTA
1 TTTAA-TTTTGTTTTATTTTATCTTTATTTATTTATTTTA
8267649 -TTAATTTTGTTTTATTTTATCTTTATTTATTTA-TTTA
1 TTTAATTTTGTTTTATTTTATCTTTATTTATTTATTTTA
*
8267686 TTTAATTTTATTTTTATTATTATCTTTATTTTATTTATTTTA
1 TTTAATTTT-GTTTTATT-TTATCTTTA-TTTATTTATTTTA
8267728 ATATCTTTTC
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
37 4 0.06
38 32 0.47
39 11 0.16
40 9 0.13
41 8 0.12
42 4 0.06
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (39 bp):
TTTAATTTTGTTTTATTTTATCTTTATTTATTTATTTTA
Found at i:8267693 original size:28 final size:28
Alignment explanation
Indices: 8267662--8267721 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
8267652 ATTTTGTTTT
8267662 ATTTTATCTTTATTTATT-TATTTATTTA
1 ATTTTATCTTTA-TTATTATATTTATTTA
* * *
8267690 ATTTTATTTTTATTATTATCTTTATTTT
1 ATTTTATCTTTATTATTATATTTATTTA
8267718 ATTT
1 ATTT
8267722 ATTTTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (28 bp):
ATTTTATCTTTATTATTATATTTATTTA
Found at i:8267695 original size:18 final size:19
Alignment explanation
Indices: 8267674--8267725 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
8267664 TTTATCTTTA
8267674 TTTATTTATTTATTTAAT-
1 TTTATTTATTTATTTAATC
*
8267692 TTTA-TT-TTTATTATTATC
1 TTTATTTATTTATT-TAATC
8267710 TTTATTTTATTTATTT
1 TTTA-TTTATTTATTT
8267726 TAATATCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
16 6 0.21
17 5 0.18
18 8 0.29
20 3 0.11
21 6 0.21
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTATTTATTTAATC
Found at i:8267705 original size:23 final size:22
Alignment explanation
Indices: 8267659--8267725 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
8267649 TTAATTTTGT
8267659 TTTATTTTATCTTTATTTATTTA
1 TTTATTTTAT-TTTATTTATTTA
* *
8267682 TTTATTTAATTTTATTTTTATTA
1 TTTATTTTATTTTATTTAT-TTA
8267705 -TTATCTTTATTTTATTTATTT
1 TTTAT-TTTATTTTATTTATTT
8267726 TAATATCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 14 0.37
23 24 0.63
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTATTTTATTTTATTTATTTA
Found at i:8267732 original size:23 final size:23
Alignment explanation
Indices: 8267660--8267760 Score: 81
Period size: 23 Copynumber: 4.6 Consensus size: 23
8267650 TAATTTTGTT
8267660 TTAT-TTTATCTTTATTTA-TTTA
1 TTATCTTTAT-TTTATTTATTTTA
*
8267682 TTTAT-TTAATTTTATTT-TTATTA
1 -TTATCTTTATTTTATTTATT-TTA
8267705 TTATCTTTATTTTATTTATTTTA
1 TTATCTTTATTTTATTTATTTTA
* ** *
8267728 ATATC-TT-TTCCATTTTTTTTA
1 TTATCTTTATTTTATTTATTTTA
8267749 TTAT-TTTATTTT
1 TTATCTTTATTTT
8267761 TTATTCTTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
21 16 0.25
22 16 0.25
23 29 0.46
24 2 0.03
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (23 bp):
TTATCTTTATTTTATTTATTTTA
Found at i:8267764 original size:12 final size:12
Alignment explanation
Indices: 8267658--8267765 Score: 55
Period size: 12 Copynumber: 8.6 Consensus size: 12
8267648 ATTAATTTTG
8267658 TTTTATTTTATCT
1 TTTTATTTTAT-T
8267671 TTATT-TATTTATT
1 TT-TTAT-TTTATT
8267684 TATTTAATTTTA-T
1 T-TTT-ATTTTATT
8267697 TTTTATTATTA-T
1 TTTTATT-TTATT
*
8267709 CTTTATTTTATT
1 TTTTATTTTATT
**
8267721 TATTT-TAATATCT
1 T-TTTATTTTAT-T
*
8267734 TTTCCATTTT-TT
1 TTT-TATTTTATT
8267746 TTATTATTTTATT
1 TT-TTATTTTATT
8267759 TTTTATT
1 TTTTATT
8267766 CTTTAATTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 27
0.68 0.07 0.25
Matches are distributed among these distances:
11 6 0.08
12 33 0.45
13 20 0.27
14 14 0.19
15 1 0.01
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:8271578 original size:20 final size:20
Alignment explanation
Indices: 8271553--8271607 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
8271543 GAGGGTTCAT
*
8271553 AGGTCCTTCGGGACATACAG
1 AGGTCCTTCAGGACATACAG
*
8271573 AGGTCCTTCAGGACATACAT
1 AGGTCCTTCAGGACATACAG
*
8271593 AGGTCATTCAGGACA
1 AGGTCCTTCAGGACA
8271608 AATTTCTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (20 bp):
AGGTCCTTCAGGACATACAG
Found at i:8273787 original size:20 final size:19
Alignment explanation
Indices: 8273749--8273788 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8273739 CATATGTTTA
*
8273749 AGAAAAGTTAAGGAGTAAT
1 AGAAAAGTTAAGAAGTAAT
*
8273768 AGAAAAGTTTAAGAATTAAT
1 AGAAAAG-TTAAGAAGTAAT
8273788 A
1 A
8273789 TATCAGCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (19 bp):
AGAAAAGTTAAGAAGTAAT
Found at i:8276004 original size:21 final size:21
Alignment explanation
Indices: 8275978--8276017 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8275968 TTGGGCAAGG
*
8275978 GGTATCGGTACCCACTCAACA
1 GGTATCGATACCCACTCAACA
*
8275999 GGTATCGATACCCTCTCAA
1 GGTATCGATACCCACTCAA
8276018 ACGAAAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (21 bp):
GGTATCGATACCCACTCAACA
Found at i:8281600 original size:20 final size:20
Alignment explanation
Indices: 8281563--8281617 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
8281553 GAGGGTTCAT
* *
8281563 AGGTCATTCGGGACATACAG
1 AGGTCCTTCAGGACATACAG
*
8281583 AGGTCCTTCAGGATATACAG
1 AGGTCCTTCAGGACATACAG
*
8281603 AGGTCCTTCGGGACA
1 AGGTCCTTCAGGACA
8281618 AATTTCTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (20 bp):
AGGTCCTTCAGGACATACAG
Found at i:8283218 original size:2 final size:2
Alignment explanation
Indices: 8283211--8283247 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8283201 CAAATAAATA
8283211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8283248 ATAAATAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8283313 original size:24 final size:24
Alignment explanation
Indices: 8283281--8283340 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 24
8283271 TAATAATAAT
8283281 AACTATATATATTATATTTCCAAA
1 AACTATATATATTATATTTCCAAA
* * *
8283305 AACTATATA-A-TATGTTTTCAAT
1 AACTATATATATTATATTTCCAAA
*
8283327 AATTATATATATTA
1 AACTATATATATTA
8283341 ATATATTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 17 0.57
23 2 0.07
24 11 0.37
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (24 bp):
AACTATATATATTATATTTCCAAA
Found at i:8283411 original size:32 final size:33
Alignment explanation
Indices: 8283348--8283411 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
8283338 TTAATATATT
8283348 TTCAAAAATCATTTTCAAAAACCATATTATACG
1 TTCAAAAATCATTTTCAAAAACCATATTATACG
** *
8283381 TTCAAAAATTGTTTTC-AAAATCATATTATAC
1 TTCAAAAATCATTTTCAAAAACCATATTATAC
8283412 ATTTTCCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.38
Consensus pattern (33 bp):
TTCAAAAATCATTTTCAAAAACCATATTATACG
Found at i:8283528 original size:38 final size:38
Alignment explanation
Indices: 8283436--8283533 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 38
8283426 TTTCAAAGCT
*
8283436 ATATACTT-TACGTTTTCAAAACTGTTTTTTAAAAAACC
1 ATATA-TTATACGTTTTCAAAACTATTTTTTAAAAAACC
* * * * **
8283474 CTATTTTATACATTTTCAAAACTATTTTTTTAAAAATT
1 ATATATTATACGTTTTCAAAACTATTTTTTAAAAAACC
*
8283512 ATATATTATGCGTTTTCGAAAA
1 ATATATTATACGTTTTC-AAAA
8283534 TACGTTTTCA
Statistics
Matches: 47, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
37 2 0.04
38 41 0.87
39 4 0.09
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (38 bp):
ATATATTATACGTTTTCAAAACTATTTTTTAAAAAACC
Found at i:8284390 original size:37 final size:37
Alignment explanation
Indices: 8284314--8284390 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
8284304 TTTTTATATT
*
8284314 TTTAATTTTGTAAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
* * *
8284351 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAAATTATATAAATATTAT-CAA
8284388 TTT
1 TTT
8284391 GTAATATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.37
37 22 0.63
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (37 bp):
TTTAATTTTGTAAAAAAAATTATATAAATATTATCAA
Found at i:8284572 original size:20 final size:20
Alignment explanation
Indices: 8284536--8284573 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8284526 ATCCTATTCC
**
8284536 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
8284556 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
8284574 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:8285047 original size:2 final size:2
Alignment explanation
Indices: 8285040--8285075 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8285030 TGCCAAATAA
8285040 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8285076 GGTTAATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8288748 original size:2 final size:2
Alignment explanation
Indices: 8288743--8288780 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8288733 GCGCACGCGC
8288743 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8288781 AAAGGTGTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8288849 original size:3 final size:3
Alignment explanation
Indices: 8288837--8288884 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
8288827 CATAATAATA
* * *
8288837 ATT ATA ATT ATT ATT AAT ATA ATAT ATT ATT ATT ATT ATTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT ATT
8288884 A
1 A
8288885 AATATATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
3 32 0.86
4 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:8288864 original size:16 final size:16
Alignment explanation
Indices: 8288839--8288914 Score: 70
Period size: 16 Copynumber: 4.8 Consensus size: 16
8288829 TAATAATAAT
8288839 TATAAT-TATTATTAA
1 TATAATATATTATTAA
*
8288854 TATAATATATTATTAT
1 TATAATATATTATTAA
* *
8288870 TATTATTTATTATTAA
1 TATAATATATTATTAA
8288886 -AT-ATATA-TATATATA
1 TATAATATATTAT-TA-A
8288901 TATATATATATTAT
1 TATA-ATATATTAT
8288915 AAATTACATC
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
13 3 0.06
14 6 0.12
15 9 0.18
16 23 0.47
18 5 0.10
19 3 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATAATATATTATTAA
Found at i:8288865 original size:19 final size:22
Alignment explanation
Indices: 8288829--8288874 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8288819 AATTTTTTCA
8288829 TAATAATAATTATAATTATTAT
1 TAATAATAATTATAATTATTAT
*
8288851 TAAT-ATAATATATTATTATTAT
1 TAATAATAAT-TATAATTATTAT
8288873 TA
1 TA
8288875 TTTATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATAATAATTATAATTATTAT
Found at i:8288893 original size:2 final size:2
Alignment explanation
Indices: 8288886--8288915 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8288876 TTATTATTAA
8288886 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8288916 AATTACATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8290343 original size:13 final size:13
Alignment explanation
Indices: 8290325--8290352 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8290315 CATTGTTTAG
8290325 TTATATGTTAATT
1 TTATATGTTAATT
8290338 TTATATGTTAATT
1 TTATATGTTAATT
8290351 TT
1 TT
8290353 TAATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (13 bp):
TTATATGTTAATT
Found at i:8290390 original size:22 final size:18
Alignment explanation
Indices: 8290375--8290410 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8290365 TTATTTAGCC
*
8290375 ATAAATATATATTTATATA
1 ATAAATA-ATATTTATTTA
8290394 ATAAATAATATTTATTT
1 ATAAATAATATTTATTT
8290411 TATTACTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATAAATAATATTTATTTA
Found at i:8290621 original size:117 final size:116
Alignment explanation
Indices: 8290436--8290669 Score: 287
Period size: 117 Copynumber: 2.0 Consensus size: 116
8290426 ATTTTAATCA
* * *
8290436 TGTTTTAATATTTATTTATTTTTTAATATTAAGAAAGGGCAGTCTTAAAACAACTGTATGTCCAT
1 TGTTTTAATATTTATTTATTTTTTAATATGAAGAAAGAGCAGTCTTAAAACAACTGTAAGTCCAT
*
8290501 TTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAAT-TATATAAAT
66 TTTCTGATATTTCTAAATAAATAAATATCCTA-TTTATAAATATATATAAAT
* ** *
8290552 TGTTTTAATTATTTATTTA-TTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAG-AAGT
1 TGTTTTAA-TATTTATTTATTTTTTAATAT-GAAG-AAAGAGCAGTCTTAAAACAACT-GTAAGT
* * **
8290615 TC-TTTTCTGATATTTCTGAATAAATAAATATTTTATTTATAAATATATATAAAT
62 CCATTTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAATATATATAAAT
8290669 T
1 T
8290670 AATATTTTTT
Statistics
Matches: 101, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
116 27 0.27
117 52 0.51
118 21 0.21
119 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.46
Consensus pattern (116 bp):
TGTTTTAATATTTATTTATTTTTTAATATGAAGAAAGAGCAGTCTTAAAACAACTGTAAGTCCAT
TTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAATATATATAAAT
Found at i:8290691 original size:25 final size:29
Alignment explanation
Indices: 8290634--8290690 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
8290624 ATATTTCTGA
8290634 ATAAATAAATATTTTATTTATAAATATAT
1 ATAAATAAATATTTTATTTATAAATATAT
* * *
8290663 ATAAATTAATATTTTTTTTATAATTATA
1 ATAAATAAATATTTTATTTATAAATATA
8290691 ATTTTGAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
ATAAATAAATATTTTATTTATAAATATAT
Found at i:8290749 original size:47 final size:47
Alignment explanation
Indices: 8290662--8290752 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
8290652 TATAAATATA
* * * * *
8290662 TATAAATTAATATTTTTTTTATAATTATAATTTTGAAATAATAGGAT
1 TATAAATTAATATATTTTTGAAAATTATAAATTTCAAATAATAGGAT
*
8290709 TATAAATTAAATATATTTTTGAAAATT-TAAATTTCTAATAATAG
1 TATAAATT-AATATATTTTTGAAAATTATAAATTTCAAATAATAG
8290753 AGACAATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
47 22 0.59
48 15 0.41
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (47 bp):
TATAAATTAATATATTTTTGAAAATTATAAATTTCAAATAATAGGAT
Found at i:8296184 original size:182 final size:182
Alignment explanation
Indices: 8295967--8296360 Score: 617
Period size: 182 Copynumber: 2.2 Consensus size: 182
8295957 GGTAAATCCT
* * *
8295967 TACCGGATATATTGAACGTGTCGATACTTTAATATAAGGATCGACACTTTGTGAATTTAAAAGAT
1 TACCGGATATATTTAAAGTGTCGATACTTTAATATAAGGATCGACACTTTGTGAATTTAAAAGAG
* * *
8296032 AAGCATTTTTAACGCCTATAAAGTGTCGATACTTTATTAAAATGTATCGATCCACAACGATATAA
66 AAGCAGTTTTAACGACTATAAAGTGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAA
* * * * *
8296097 CATATAAAAATATGACGAAATCGGTATCAAAATGATAAAACTGGTAAAGAGC
131 CAGATAAAAATATGACGAAACCGATATCAAAATGATAAAACCGCTAAAGAGC
* * *
8296149 TACCAGATATATTTAAAGTATCGATACTTTAATATAAGTATCGACACTTTGTGAATTTAAAAGAG
1 TACCGGATATATTTAAAGTGTCGATACTTTAATATAAGGATCGACACTTTGTGAATTTAAAAGAG
8296214 AAGCAGTTTTAACGACTATAAAGTGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAA
66 AAGCAGTTTTAACGACTATAAAGTGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAA
* *** *
8296279 CAGGTAAAAATATGGTTAAACCGATATCAAAATGATAAAACCGCTAAAGCGC
131 CAGATAAAAATATGACGAAACCGATATCAAAATGATAAAACCGCTAAAGAGC
8296331 TACCGGATATATTTAAAGTGTCGATACTTT
1 TACCGGATATATTTAAAGTGTCGATACTTT
8296361 CATAAGTACG
Statistics
Matches: 191, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
182 191 1.00
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (182 bp):
TACCGGATATATTTAAAGTGTCGATACTTTAATATAAGGATCGACACTTTGTGAATTTAAAAGAG
AAGCAGTTTTAACGACTATAAAGTGTCGATACTTTATAAAAATGTATCGATCCACAACGATATAA
CAGATAAAAATATGACGAAACCGATATCAAAATGATAAAACCGCTAAAGAGC
Found at i:8298177 original size:19 final size:22
Alignment explanation
Indices: 8298129--8298183 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
8298119 TTTTTTGTGT
8298129 TTTTATATAAAATGATAGTATAA
1 TTTTATATAAAAT-ATAGTATAA
8298152 TTATTATATAAAAT-TA-TA-AA
1 TT-TTATATAAAATATAGTATAA
8298172 TTTTATTATAAA
1 TTTTA-TATAAA
8298184 TGCAGGTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
19 3 0.10
20 10 0.33
21 2 0.07
22 2 0.07
23 2 0.07
24 11 0.37
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
TTTTATATAAAATATAGTATAA
Found at i:8298575 original size:21 final size:21
Alignment explanation
Indices: 8298551--8298594 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8298541 AAGACAATCA
8298551 AGAGTCAAAGAGAAACTTGAG
1 AGAGTCAAAGAGAAACTTGAG
* * *
8298572 AGAGTCGAAGATACACTTGAG
1 AGAGTCAAAGAGAAACTTGAG
8298593 AG
1 AG
8298595 GCATAAAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.30, T:0.16
Consensus pattern (21 bp):
AGAGTCAAAGAGAAACTTGAG
Found at i:8298665 original size:33 final size:33
Alignment explanation
Indices: 8298628--8298693 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
8298618 AAATAGATGG
* *
8298628 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGGGTTAAGGGGTGA
*
8298661 AGTGGTGAAAGAAGTTGAGGGGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGGGTTAAGGGGTGA
8298694 TCTTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.48, T:0.21
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGGGTTAAGGGGTGA
Found at i:8300504 original size:19 final size:19
Alignment explanation
Indices: 8300480--8300528 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
8300470 AATGTAGGGT
*
8300480 TAATTTTTTATAAGATTTA
1 TAATTTTGTATAAGATTTA
8300499 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
8300518 TAAATTTGTAT
1 TAATTTTGTAT
8300529 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:8301274 original size:200 final size:200
Alignment explanation
Indices: 8300815--8301530 Score: 1109
Period size: 200 Copynumber: 3.6 Consensus size: 200
8300805 ACATATGCAT
* * *
8300815 CCATAAGTATAATGTAATAGGTAAATTTTTAATGTAACCGGTATAAATATATCAGTTTTATGAGA
1 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
* *
8300880 GAATATGTCTACAACATGTATC-ATCACTTTTTAAATTTTGTGTCGATACTTTTGGTCCAGAATG
66 GAATAGGTCTACAACATGTATCGA-CACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATG
*
8300944 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCTAGAAACA
130 GATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCA-AAACA
8301009 TCGAAAC
194 TCGAAAC
* * *
8301016 CCATAATTATAATGTAATAGGTAAATTTACAATGTAACCGGTATAAATATATCGGTTTTATGAGA
1 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
*
8301081 GAATAGATCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
*
8301146 ATGCCAAAAA-GGTGAACGCATAAAGTGTCAATACATTTTCAAAAAGTGTCGATCCCAAAAGCAT
131 ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAA-CAT
8301210 CGAAAC
195 CGAAAC
* * *
8301216 CCATAATTATAATGTAATAGGTAAGTTTTCAATGTAACTGGTATAAATATACCGGTTTTATGAGA
1 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
*
8301281 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGA
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
* *
8301346 ATGCCAAAAAGGGTGCAAC-CATAAAGCGTCGATACATTTAT-AAAAAGTATCGATCCCAAAAAC
131 ATGCCAAAAAGGGTG-AACGCATAAAGTGTCGATACATTT-TCAAAAAGTGTCGATCCC-AAAAC
** * *
8301409 ATATACAT
193 ATCGAAAC
*
8301417 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACC-GATTTATGAGA
1 CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
* * * *
8301481 GAATAGGTCTACAACATATATTGATACATTTTTAATTTTGTGTCGATACT
66 GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACT
8301531 AATTTAAATA
Statistics
Matches: 479, Mismatches: 30, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
199 3 0.01
200 244 0.51
201 223 0.47
202 9 0.02
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33
Consensus pattern (200 bp):
CCATAAGTATAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCGGTTTTATGAGA
GAATAGGTCTACAACATGTATCGACACTTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGG
ATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAAGTGTCGATCCCAAAACATC
GAAAC
Found at i:8307810 original size:200 final size:199
Alignment explanation
Indices: 8307409--8308117 Score: 706
Period size: 200 Copynumber: 3.5 Consensus size: 199
8307399 ACCTAAATAT
* *
8307409 GTGTCGATACATTT-TATACAAGTATCGA-CCCAAAAAACATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTAT-TAAAAGTATCGATCCC-AAAAACATCGAAACCAATAATTATAATGTAA
* * * * *
8307472 TAGGTAAATTAACAATGTAACCGGTATAAATATACCGG-TTAATTAGAAAACAAGTCAACATAAT
64 TAGGTAAATTTACAATGTAACTGGTATAAATATACCGGTTTTATGAGAAAATAAGTCAACATAAT
* * * *
8307536 GTATCAACACTTGTGTAATTTGTGTCGATACTTATTGTCCAGGATGAATGCAGAAACGAGGTGCA
129 GTATCGACACTTGT-TAATTTGTGTCGATACTT-TTGTCCAGAATGAATCCAGAAAAGAGGTGCA
8307601 CACATAAA
192 CACATAAA
* * * *
8307609 GTGTTGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAATCGATAATTATAATGTATTA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * * *
8307674 GGTAAATTTACAATGTAACTGATATAAATCTACCGGTTTTATGATAAAATAGGTCAACATCAA-G
66 GGTAAATTTACAATGTAACTGGTATAAATATACCGGTTTTATGAGAAAATAAGTCAACAT-AATG
* *
8307738 TATCGACACTTGCTAAATTTGTGTCGATAATTTTGGTCCAGAATGAATACCA-AAAAG-GGTGCA
130 TATCGACACTTG-TTAATTTGTGTCGATACTTTT-GTCCAGAATGAAT-CCAGAAAAGAGGTGCA
8307801 -ACTATAAA
192 CAC-ATAAA
* ** * * *
8307809 GTGTCGATACATTTATAAAAAGTATCGATCCCGGAAACATCGAAACCCATAAGTATAATATAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * * *
8307874 GGTAAATTTTCAATGTAACTGGTATAAATATACCAGTTTTATGAGAGAATATGTCTAA-ATAATG
66 GGTAAATTTACAATGTAACTGGTATAAATATACCGGTTTTATGAGAAAATAAGTC-AACATAATG
* * *
8307938 TATCGACACGTTGTTAGTTTGTGTCGATACTTTTTTCCAGAATGAAAT--ATGAATGCCCAACCA
130 TATCGACAC-TTGTTAATTTGTGTCGATACTTTTGTCCAGAATG-AATCCA-GAA-----AA-GA
*
8308001 GATGCA-AGCATAAA
186 GGTGCACA-CATAAA
* ** * ** **
8308015 GTGTCGATACATTTA--AAATTGTATCGATCTAAAAAACATCGTAACTGATAACAATAATGTAAT
1 GTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
** * * *
8308078 AGGTAAATTTGTAATGTTACCGGTATAAATATATCGGTTT
65 AGGTAAATTTACAATGTAACTGGTATAAATATACCGGTTT
8308118 ACTTCGAAAA
Statistics
Matches: 426, Mismatches: 60, Indels: 41
0.81 0.11 0.08
Matches are distributed among these distances:
197 1 0.00
199 15 0.04
200 235 0.55
201 71 0.17
202 5 0.01
204 5 0.01
205 67 0.16
206 26 0.06
207 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (199 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
GGTAAATTTACAATGTAACTGGTATAAATATACCGGTTTTATGAGAAAATAAGTCAACATAATGT
ATCGACACTTGTTAATTTGTGTCGATACTTTTGTCCAGAATGAATCCAGAAAAGAGGTGCACACA
TAAA
Found at i:8308237 original size:87 final size:87
Alignment explanation
Indices: 8308135--8308297 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 87
8308125 AAATATGTCA
* * *
8308135 ATATAAGCGCTACCTATTACATTATATAAGAGTTACCTAATATGTTATTGTATTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
*
8308200 CCGGTTAAATGCCTATTTTATT
66 CCGATTAAATGCCTATTTTATT
* *
8308222 ATATAAGCGCTACCTATTACATTATATAAGTGCTACCTAATATGTTATTATACTTGGTAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
*
8308287 TCGATTAAATG
66 CCGATTAAATG
8308298 ATATAACATT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTATACTTGATAATATTT
CCGATTAAATGCCTATTTTATT
Found at i:8308271 original size:26 final size:23
Alignment explanation
Indices: 8308211--8308260 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
8308201 CGGTTAAATG
8308211 CCTATTTTATTATATAAGCGCTA
1 CCTATTTTATTATATAAGCGCTA
** *
8308234 CCTATTACATTATATAAGTGCTA
1 CCTATTTTATTATATAAGCGCTA
8308257 CCTA
1 CCTA
8308261 ATATGTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (23 bp):
CCTATTTTATTATATAAGCGCTA
Found at i:8308823 original size:5 final size:5
Alignment explanation
Indices: 8308806--8308886 Score: 153
Period size: 5 Copynumber: 16.2 Consensus size: 5
8308796 TAGCACTAAC
*
8308806 AGTCT AGTTT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT
1 AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT
8308856 AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT A
1 AGTCT AGTCT AGTCT AGTCT AGTCT AGTCT A
8308887 CTTCTAGTGT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 74 1.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.41
Consensus pattern (5 bp):
AGTCT
Found at i:8309926 original size:15 final size:15
Alignment explanation
Indices: 8309894--8309925 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
8309884 ATTTTTAATG
8309894 AATTTTGAGAAAAAA
1 AATTTTGAGAAAAAA
8309909 AATTATTGAGAAAAAA
1 AATT-TTGAGAAAAAA
8309925 A
1 A
8309926 TGAGGGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (15 bp):
AATTTTGAGAAAAAA
Found at i:8310442 original size:29 final size:29
Alignment explanation
Indices: 8310409--8310514 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
8310399 TAAATATTTT
*
8310409 TTTTTATAAATTACATTTAA-GGACAAAGA
1 TTTTTATAAATTACA-ATAATGGACAAAGA
* * **
8310438 TTTTTAAAAATTACAATAATGGATAAATC
1 TTTTTATAAATTACAATAATGGACAAAGA
* * *
8310467 TTTTTATAAATTATAATAAT-GACATATA
1 TTTTTATAAATTACAATAATGGACAAAGA
*
8310495 CTTTTTACAAATTACAATAA
1 -TTTTTATAAATTACAATAA
8310515 CAACTCATAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 8 0.13
29 55 0.87
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.41
Consensus pattern (29 bp):
TTTTTATAAATTACAATAATGGACAAAGA
Found at i:8310536 original size:28 final size:28
Alignment explanation
Indices: 8310467--8310560 Score: 109
Period size: 28 Copynumber: 3.3 Consensus size: 28
8310457 TGGATAAATC
* * ** *
8310467 TTTTTATAAATTATAATAATGACATATA
1 TTTTTACAAATTACAATAACAACCTATA
8310495 CTTTTTACAAATTACAATAACAA-CTCATA
1 -TTTTTACAAATTACAATAACAACCT-ATA
*
8310524 TTTTTACATATTACAATAACAACCTATA
1 TTTTTACAAATTACAATAACAACCTATA
8310552 TTTTTACAA
1 TTTTTACAA
8310561 TCACTGCATT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
28 33 0.59
29 23 0.41
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.41
Consensus pattern (28 bp):
TTTTTACAAATTACAATAACAACCTATA
Found at i:8339277 original size:20 final size:22
Alignment explanation
Indices: 8339252--8339298 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
8339242 TTAAATATTA
*
8339252 ATACTCTTAT-GG-GAGTATCG
1 ATACTCCTATAGGTGAGTATCG
*
8339272 ATACTCCTATAGGTGGGTATCG
1 ATACTCCTATAGGTGAGTATCG
8339294 ATACT
1 ATACT
8339299 ACTCCGAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 2 0.09
22 12 0.52
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (22 bp):
ATACTCCTATAGGTGAGTATCG
Found at i:8343201 original size:15 final size:15
Alignment explanation
Indices: 8343181--8343219 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8343171 AAAAATGAAG
8343181 AATAAAGATTAAGAT
1 AATAAAGATTAAGAT
* *
8343196 AATAAAGACTAAGTT
1 AATAAAGATTAAGAT
*
8343211 GATAAAGAT
1 AATAAAGAT
8343220 AAATAAATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.15, T:0.26
Consensus pattern (15 bp):
AATAAAGATTAAGAT
Found at i:8351739 original size:55 final size:55
Alignment explanation
Indices: 8351673--8352594 Score: 1269
Period size: 55 Copynumber: 16.9 Consensus size: 55
8351663 TCCACTACCA
* * *
8351673 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * *
8351728 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGTCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8351783 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTTGCACACAAAGTGCTC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCC
* * * * *
8351839 ATACGAAAATTCATAAACTCATTTTGAATTTATTAGTTTTACACATAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8351894 ATACGGAAGTTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * * **
8351949 ATATGGAAATTCATAATCTCATTATGAATTTATTAGTTTTGCACACAAAGTGCTT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8352004 ATATGGAAATTCATAAACGT-ATTATGAATTTCTTAGTTTTGCACCCAAAGTGCCC
1 ATACGGAAATTCATAAAC-TCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * *
8352059 ATAC-GAAATTTCCTAAACTTATTATGAATTTTTTAGTTTTTGCACACAAAGTGCCC
1 ATACGGAAA-TTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCC
* * *
8352115 ATACGGAAATTCATAAAATCAATATGAATTTCTTAGTTTTGCACACAAAGTGCCT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8352170 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACGCAAGGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8352225 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCAGACAAAGTG--C
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
8352278 -TGACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
1 AT-ACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
8352333 ATAC----A--GATAAACTCATTATGAATTTCGTAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
8352382 ATAC-GAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* * *
8352436 ATACGGAAATTCATAAAC-CTATTATTAATTTCTTA-TGTTTGTACACAAAGTGTCC
1 ATACGGAAATTCATAAACTC-ATTATGAATTTCTTAGT-TTTGCACACAAAGTGCCC
* * *
8352491 ATACAGAAATTCGTAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTACCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCC
** *
8352547 ATACATAAATTCATAAACTCATTACGAATTTCTTAGTTTTTGCACACA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACA
8352595 TATAGTGTTA
Statistics
Matches: 778, Mismatches: 68, Indels: 41
0.88 0.08 0.05
Matches are distributed among these distances:
49 46 0.06
51 1 0.00
52 2 0.00
53 48 0.06
54 53 0.07
55 469 0.60
56 154 0.20
57 5 0.01
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:8351930 original size:166 final size:164
Alignment explanation
Indices: 8351673--8352594 Score: 1246
Period size: 166 Copynumber: 5.6 Consensus size: 164
8351663 TCCACTACCA
* *
8351673 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGCCCATACGGAAAT
1 ATACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
* * *
8351738 TCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGTCCATACGGAAATTCATAAACTT
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTG-CCATACGGAAATTCATAAACTC
8351803 ATTATGAATTTCTTAGTTTTTGCACACAAAGTGCTC
130 ATTATGAATTTCTTAG-TTTTGCACACAAAGTGCTC
* * * * *
8351839 ATACGAAAATTCATAAACTCATTTTGAATTTATTAGTTTTACACATAAAGTGCCCATACGGAAGT
1 ATACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
* *
8351904 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCTATATGGAAATTCATAATCTC
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCC-ATACGGAAATTCATAAACTC
* *
8351969 ATTATGAATTTATTAGTTTTGCACACAAAGTGCTT
130 ATTATGAATTTCTTAGTTTTGCACACAAAGTGCTC
* * *
8352004 ATATGGAAATTCATAAACGT-ATTATGAATTTCTTAGTTTTGCACCCAAAGTGCCCATAC-GAAA
1 ATACGAAAATTCATAAAC-TCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAA
* * *
8352067 TTTCCTAAACTTATTATGAATTTTTTAGTTTTTGCACACAAAGTGCCCATACGGAAATTCATAAA
65 -TTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTG-CCATACGGAAATTCATAAA
* *
8352132 ATCAATATGAATTTCTTAGTTTTGCACACAAAGTGC-C
127 CTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCTC
* * *
8352169 TATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACGCAAGGTGCCCATACGGAAA
1 -ATACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAA
* * *
8352234 TTCATAAACTTATTATGAATTTCTTAGTTTTGCAGACAAAGTG-C-TGACGAAAATTCATAAACT
65 TTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCAT-ACGGAAATTCATAAACT
*
8352297 CATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
129 CATTATGAATTTCTTAGTTTTGCACACAAAGTGCTC
* *
8352333 ATAC----A--GATAAACTCATTATGAATTTCGTAGTTTTGCACACAAAGTGCCCATAC-GAAAT
1 ATACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
8352391 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAAC-C
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTG-CCATACGGAAATTCATAAACTC
* *
8352455 TATTATTAATTTCTTA-TGTTTGTACACAAAGTG-TCC
130 -ATTATGAATTTCTTAGT-TTTGCACACAAAGTGCT-C
* * **
8352491 ATAC-AGAAATTCGTAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTACCCATACATAA
1 ATACGA-AAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCCATACGGAA
*
8352555 ATTCATAAACTCATTACGAATTTCTTAGTTTTTGCACACA
64 ATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACA
8352595 TATAGTGTTA
Statistics
Matches: 677, Mismatches: 54, Indels: 49
0.87 0.07 0.06
Matches are distributed among these distances:
156 45 0.07
157 46 0.07
158 49 0.07
159 2 0.00
162 2 0.00
163 53 0.08
164 26 0.04
165 132 0.19
166 305 0.45
167 17 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (164 bp):
ATACGAAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCATACGGAAATTCATAAACTCA
TTATGAATTTCTTAGTTTTGCACACAAAGTGCTC
Found at i:8352112 original size:221 final size:220
Alignment explanation
Indices: 8351673--8352594 Score: 1319
Period size: 221 Copynumber: 4.2 Consensus size: 220
8351663 TCCACTACCA
* * *
8351673 ATACGAAAATTCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGCCCATACGGAAAT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
* * *
8351738 TCATAAACTTATTATGAATTTCTTAGTTTTACACACAAAGTGTCCATACGGAAATTCATAAACTT
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTT
* *
8351803 ATTATGAATTTCTTAGTTTTTGCACACAAAGTGCTCATACGAAAATTCATAAACTCATTTTGAAT
131 ATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAAT
* * *
8351868 TTATTAGTTTTACACATAAAGTGCCC
195 TTCTTAGTTTTGCACACAAAGTGCCC
* * *
8351894 ATACGGAAGTTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCTATATGGAAAT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
* * ** * *
8351959 TCATAATCTCATTATGAATTTATTAGTTTTGCACACAAAGTGCTTATATGGAAATTCATAAACGT
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTT
* * * *
8352024 ATTATGAATTTCTTAGTTTTGCACCCAAAGTGCCCATACGAAATTTCCTAAACTTATTATGAATT
131 ATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAATT
*
8352089 TTTTAGTTTTTGCACACAAAGTGCCC
196 TCTTAG-TTTTGCACACAAAGTGCCC
* * *
8352115 ATACGGAAATTCATAAAATCAATATGAATTTCTTAGTTTTGCACACAAAGTGCCTATACGGAAAT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
* *
8352180 TCATAAACTCATTATGAATTTCTTAGTTTTGCACGCAAGGTGCCCATACGGAAATTCATAAACTT
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTT
*
8352245 ATTATGAATTTCTTAGTTTTGCAGACAAAGTG--C-TGACGAAAATTCATAAACTCATTATGAAT
131 ATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCAT-ACGAAAATTCATAAACTCATTATGAAT
8352307 TTCTTAGTTTTGCACACAAAGTGCCC
195 TTCTTAGTTTTGCACACAAAGTGCCC
* *
8352333 ATAC----A--GATAAACTCATTATGAATTTCGTAGTTTTGCACACAAAGTGCCCATAC-GAAAT
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
*
8352391 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACCT
66 TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTT
* * * *
8352456 ATTATTAATTTCTTA-TGTTTGTACACAAAGTGTCCATAC-AGAAATTCGTAAACTCATTATGAA
131 ATTATGAATTTCTTAGT-TTTGCACACAAAGTGCCCATACGA-AAATTCATAAACTCATTATGAA
*
8352519 TTTCTTAGCTTTTGCACACAAAGTACCC
194 TTTCTTAG-TTTTGCACACAAAGTGCCC
** *
8352547 ATACATAAATTCATAAACTCATTACGAATTTCTTAGTTTTTGCACACA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAG-TTTTGCACACA
8352595 TATAGTGTTA
Statistics
Matches: 628, Mismatches: 58, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
210 1 0.00
211 94 0.15
212 44 0.07
213 32 0.05
214 24 0.04
218 25 0.04
219 31 0.05
220 70 0.11
221 307 0.49
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (220 bp):
ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAAT
TCATAAACTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTT
ATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCATACGAAAATTCATAAACTCATTATGAATT
TCTTAGTTTTGCACACAAAGTGCCC
Found at i:8352974 original size:22 final size:22
Alignment explanation
Indices: 8352942--8353019 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
8352932 TATCTCTACC
*
8352942 ATGGTATCGATACTTCTATACT
1 ATGGTACCGATACTTCTATACT
*
8352964 ATGGTACCGATACCTT-TCT-CT
1 ATGGTACCGATA-CTTCTATACT
* * *
8352985 CA--GTATCGATACTACTACACT
1 -ATGGTACCGATACTTCTATACT
8353006 ATGGTACCGATACT
1 ATGGTACCGATACT
8353020 CCCTTTCGGT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
19 2 0.05
20 10 0.23
21 4 0.09
22 24 0.56
23 3 0.07
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (22 bp):
ATGGTACCGATACTTCTATACT
Found at i:8353340 original size:138 final size:138
Alignment explanation
Indices: 8353092--8353369 Score: 556
Period size: 138 Copynumber: 2.0 Consensus size: 138
8353082 AGTATCGATA
8353092 CCCCATTAATATCGATACCACTTGCACCGGTACCGATAATGTTTGTCATATTTCTACCCATTTAA
1 CCCCATTAATATCGATACCACTTGCACCGGTACCGATAATGTTTGTCATATTTCTACCCATTTAA
8353157 GCCTATAGTATCGGTACTGTTCTATTAGTACCGATACCTTTACCCAAATTTACCATTTTTCAACC
66 GCCTATAGTATCGGTACTGTTCTATTAGTACCGATACCTTTACCCAAATTTACCATTTTTCAACC
8353222 CATTTTTT
131 CATTTTTT
8353230 CCCCATTAATATCGATACCACTTGCACCGGTACCGATAATGTTTGTCATATTTCTACCCATTTAA
1 CCCCATTAATATCGATACCACTTGCACCGGTACCGATAATGTTTGTCATATTTCTACCCATTTAA
8353295 GCCTATAGTATCGGTACTGTTCTATTAGTACCGATACCTTTACCCAAATTTACCATTTTTCAACC
66 GCCTATAGTATCGGTACTGTTCTATTAGTACCGATACCTTTACCCAAATTTACCATTTTTCAACC
8353360 CATTTTTT
131 CATTTTTT
8353368 CC
1 CC
8353370 TAAATTTTCC
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.37
Consensus pattern (138 bp):
CCCCATTAATATCGATACCACTTGCACCGGTACCGATAATGTTTGTCATATTTCTACCCATTTAA
GCCTATAGTATCGGTACTGTTCTATTAGTACCGATACCTTTACCCAAATTTACCATTTTTCAACC
CATTTTTT
Found at i:8354937 original size:15 final size:15
Alignment explanation
Indices: 8354917--8354955 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
8354907 AAAATTGAAG
8354917 AATAAAGATTAAGAA
1 AATAAAGATTAAGAA
* *
8354932 AATAAAGACTAAGAT
1 AATAAAGATTAAGAA
8354947 AATAAAGAT
1 AATAAAGAT
8354956 AAATAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.64, C:0.03, G:0.13, T:0.21
Consensus pattern (15 bp):
AATAAAGATTAAGAA
Found at i:8366858 original size:90 final size:88
Alignment explanation
Indices: 8366716--8366878 Score: 281
Period size: 90 Copynumber: 1.8 Consensus size: 88
8366706 CTTTTATAGC
* *
8366716 CAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAATTCTATATTTAATTAATT
1 CAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATAAATTAAATCTATATTTAATTAATT
*
8366781 AGAATTTAATAATCCCTTTATATT
66 -GAAATTAATAATCCCTTTATATT
8366805 CAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATAAATTAAATCTATATTTAATTAAT
1 CAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATAAATTAAATCTATATTTAATTAAT
8366870 TGAAATTAA
65 TGAAATTAA
8366879 ATATTTGGGA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
89 31 0.44
90 39 0.56
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (88 bp):
CAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATAAATTAAATCTATATTTAATTAATT
GAAATTAATAATCCCTTTATATT
Found at i:8369163 original size:28 final size:31
Alignment explanation
Indices: 8369123--8369192 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
8369113 ATTTTTTATT
8369123 TAAGTACCTAAAG-T-T-TTTTTGGTCAAAA
1 TAAGTACCTAAAGATATCTTTTTGGTCAAAA
*
8369151 TAAGTATCC-AAAGATATCTTTTTGGTCAATA
1 TAAGTA-CCTAAAGATATCTTTTTGGTCAAAA
*
8369182 TAGGTACCTAA
1 TAAGTACCTAA
8369193 GTATTCAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
28 10 0.29
29 3 0.09
30 3 0.09
31 19 0.54
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (31 bp):
TAAGTACCTAAAGATATCTTTTTGGTCAAAA
Found at i:8372416 original size:49 final size:49
Alignment explanation
Indices: 8372317--8372814 Score: 673
Period size: 49 Copynumber: 10.2 Consensus size: 49
8372307 CACCGTTAAA
*
8372317 CATTTAA-TTGTCATTAGTGGCACATTTCTGCC-AAAATGCACCATTATG
1 CATTTAACTTG-CATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
* * * *
8372365 CATTTAACTTGCACTAGTAGTACCTTTCTG-CAAGAAAAGCACCATTATG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAA-AAATGCACCATTATG
*
8372414 CATTTAACTTGCATTAGTGGCATCTTTCTGCCAAAAATGCACCATTATG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
* * *
8372463 CATTTATCTTGCATTAGTGTCATCTTTCTGCCAAAAATGCACCATTATG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
* * * *
8372512 CATTTAACTTGCATTAGCGGCACCTATT-TGCAAAAAATACACCATTATA
1 CATTTAACTTGCATTAGTGGCACCT-TTCTGCCAAAAATGCACCATTATG
* * * * * * *
8372561 CATTTATCTTGCATTAGCGGCACATTTTTGTCAAAAAAGCACCATTATA
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
*
8372610 CATTTAACTTGCATTAGTGGCACTTTTCTGCCAAAAATGCACCATTATG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
* *
8372659 CATTTAGCTTGCATTAGTGGCACCTTTCTGCCAAAAAT-CAACCATTATA
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGC-ACCATTATG
* *
8372708 CATTTAACTTGCATTAGTGGCACCTCTCTTCCAAAAATGCACCATTATG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
* * *
8372757 CATTTAACTTGCATTAATGACACCTTTCTGCCAAAAATGCACCATTACG
1 CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
8372806 CATTTAACT
1 CATTTAACT
8372815 CAGTGGCTCC
Statistics
Matches: 398, Mismatches: 44, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.00
48 26 0.07
49 365 0.92
50 6 0.02
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (49 bp):
CATTTAACTTGCATTAGTGGCACCTTTCTGCCAAAAATGCACCATTATG
Found at i:8375545 original size:89 final size:89
Alignment explanation
Indices: 8375394--8375564 Score: 299
Period size: 89 Copynumber: 1.9 Consensus size: 89
8375384 CCTAACACAC
8375394 CCTTTTATAGCCAAATTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAATTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
*
8375459 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTTAATAAT
* *
8375483 CCTTTTATATCCAAGTTACCCTAATCATA-TAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAATTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTAT
8375547 ATTTAATTAATTGAAATT
65 ATTTAATTAATTGAAATT
8375565 AATTATTCAG
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
88 5 0.06
89 73 0.94
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAATTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTTAATAAT
Found at i:8382377 original size:90 final size:88
Alignment explanation
Indices: 8382222--8382391 Score: 268
Period size: 90 Copynumber: 1.9 Consensus size: 88
8382212 AAATACCCTT
* *
8382222 TTATAGCCAAGTTACCCTAATCATATTAGGGTTTTACTATTTCAAATTAATTAAATCTATGTTTA
1 TTATAGCCAAATTACCCTAATCATATTAGGGTTTTACTATTTCAAATTAATTAAATCTATATTTA
*
8382287 ATTAATTAGAATTTAATAATCCTC
66 ATTAATT-GAAATTAATAATCCTC
* * *
8382311 TTATATCCAAATTACCCTAATCATATTAGGGATTTTATTATTTTAAATTAATTAAATCTATATTT
1 TTATAGCCAAATTACCCTAATCATATTAGGG-TTTTACTATTTCAAATTAATTAAATCTATATTT
8382376 AATTAATTGAAATTAA
65 AATTAATTGAAATTAA
8382392 ATATTCGGGA
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 36 0.49
90 38 0.51
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.44
Consensus pattern (88 bp):
TTATAGCCAAATTACCCTAATCATATTAGGGTTTTACTATTTCAAATTAATTAAATCTATATTTA
ATTAATTGAAATTAATAATCCTC
Found at i:8386731 original size:13 final size:13
Alignment explanation
Indices: 8386713--8386741 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8386703 ATTGAGAGCT
8386713 TGTAGGGTGCTAG
1 TGTAGGGTGCTAG
8386726 TGTAGGGTGCTAG
1 TGTAGGGTGCTAG
8386739 TGT
1 TGT
8386742 TCTCGGATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.45, T:0.34
Consensus pattern (13 bp):
TGTAGGGTGCTAG
Found at i:8387690 original size:50 final size:49
Alignment explanation
Indices: 8387463--8387788 Score: 442
Period size: 49 Copynumber: 6.6 Consensus size: 49
8387453 TTTTATGCCG
* * * * * *
8387463 AAATGCATCGTTATACATTTAACTAT-CATTAGTGGTACCTTTCTACC-A
1 AAATGCACCATTATGCATTTAACT-TGCATTAGTGGCACATTTCTGCCAA
* * * * *
8387511 AAATGCAACGTTATGCATTTAACTTGCAATAGTGGCACATTTATTCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
*
8387560 AAATGCACCATTATACATTTAACTTGCATTAGTGGCACATTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* *
8387609 AAATGAACCATTATGCATTTATCTTGCATTAGTGGCACATTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
*
8387658 ACAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTTCCAAA
1 A-AATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCC-AA
8387709 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCATC-TTTCTGCCAA
1 AAATGCACCATTATGCATTTAACTTGCATTAGTGGCA-CATTTCTGCCAA
* *
8387758 AAATGCACCGTTATGCATTTAACTTTCATTA
1 AAATGCACCATTATGCATTTAACTTGCATTA
8387789 TAGAGCAGTT
Statistics
Matches: 251, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
47 1 0.00
48 38 0.15
49 122 0.49
50 86 0.34
51 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (49 bp):
AAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
Found at i:8387701 original size:99 final size:98
Alignment explanation
Indices: 8387463--8387788 Score: 435
Period size: 99 Copynumber: 3.3 Consensus size: 98
8387453 TTTTATGCCG
* * * * *
8387463 AAATGCATCGTTATACATTTAACTAT-CATTAGTGGTACCTTTCTACC-AAAATGCAA-CGTTAT
1 AAATGCACCATTATACATTTAACT-TGCATTAGTGGCACATTTCTACCAAAAATG-AACCATTAT
* * *
8387525 GCATTTAACTTGCAATAGTGGCACATTTATTCCAA
64 GCATTTAACTTGCATTAGTGGCACATTTCTGCCAA
*
8387560 AAATGCACCATTATACATTTAACTTGCATTAGTGGCACATTTCTGCCAAAAATGAACCATTATGC
1 AAATGCACCATTATACATTTAACTTGCATTAGTGGCACATTTCTACCAAAAATGAACCATTATGC
*
8387625 ATTTATCTTGCATTAGTGGCACATTTCTGCCAA
66 ATTTAACTTGCATTAGTGGCACATTTCTGCCAA
* * *
8387658 ACAATGCACCATTATGCATTTAACTTGCATTAGTGGCACATTTCTTCCAAAAAATGCACCATTAT
1 A-AATGCACCATTATACATTTAACTTGCATTAGTGGCACATTTCTACC-AAAAATGAACCATTAT
8387723 GCATTTAACTTGCATTAGTGGCATC-TTTCTGCCAA
64 GCATTTAACTTGCATTAGTGGCA-CATTTCTGCCAA
* * *
8387758 AAATGCACCGTTATGCATTTAACTTTCATTA
1 AAATGCACCATTATACATTTAACTTGCATTA
8387789 TAGAGCAGTT
Statistics
Matches: 207, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
96 1 0.00
97 42 0.20
98 43 0.21
99 72 0.35
100 48 0.23
101 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (98 bp):
AAATGCACCATTATACATTTAACTTGCATTAGTGGCACATTTCTACCAAAAATGAACCATTATGC
ATTTAACTTGCATTAGTGGCACATTTCTGCCAA
Found at i:8390235 original size:19 final size:19
Alignment explanation
Indices: 8390211--8390253 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
8390201 GATACTATAT
8390211 GCTAAAATGGGATGAATTA
1 GCTAAAATGGGATGAATTA
8390230 GCTAAAATGGGATGAATTA
1 GCTAAAATGGGATGAATTA
*
8390249 ACTAA
1 GCTAA
8390254 GTAGTATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (19 bp):
GCTAAAATGGGATGAATTA
Found at i:8390418 original size:20 final size:20
Alignment explanation
Indices: 8390369--8390429 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 20
8390359 TACCGGAAGG
*
8390369 GGGTATCGATACCATAGTAT
1 GGGTATCGATACCATAGTAA
*
8390389 GGTAGTATCGATACCATGGTAA
1 GG--GTATCGATACCATAGTAA
8390411 GGGTATCGATACCA-AGTAA
1 GGGTATCGATACCATAGTAA
8390430 CATCAAACCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.11
20 14 0.39
22 18 0.50
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (20 bp):
GGGTATCGATACCATAGTAA
Found at i:8390464 original size:95 final size:95
Alignment explanation
Indices: 8390294--8390479 Score: 275
Period size: 95 Copynumber: 2.0 Consensus size: 95
8390284 ATAACGATGA
* ** * *
8390294 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAATCATCATTGAAGCTAAAATTGGTATCGA
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAATCAACATCAAACCTAAAATTAGTATCGA
*
8390359 TACCGGAAGGGGGTATCGATACCATAGTAT
66 TACCAGAAGGGGGTATCGATACCATAGTAT
8390389 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAAGT-AACATCAAACCTAAAATTAGTATCG
1 GGTAGTATCGATACCATGGTAAGGGTATCGATACCAA-TCAACATCAAACCTAAAATTAGTATCG
* * *
8390453 ATACTATAAGGGGGTATCGGTACCATA
65 ATACCAGAAGGGGGTATCGATACCATA
8390480 ATATAAAAGT
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 80 0.99
96 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (95 bp):
GGTAGTATCGATACCATGGTAAGGGTATCGATACCAATCAACATCAAACCTAAAATTAGTATCGA
TACCAGAAGGGGGTATCGATACCATAGTAT
Found at i:8391059 original size:45 final size:40
Alignment explanation
Indices: 8390927--8391126 Score: 145
Period size: 34 Copynumber: 5.0 Consensus size: 40
8390917 GAATAAAAGA
* * *
8390927 ATAATGCATATGTGTGCATTATTGGTATAAAAGGATGGCAT
1 ATAATGCATATGGGTGCATTATTGGCATGAAAGGAT-GCAT
** *
8390968 AGCTGAAATATATATGGGTGCATTATCGGCAT-AAA--A-G-A-
1 A--T--AATGCATATGGGTGCATTATTGGCATGAAAGGATGCAT
8391006 ATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAT
1 ATAATGCATATGGGTGCATTATTGGCATGAAAGGATG-CAT
* *
8391047 AGCTGAAATGCATATGGGTGCATTATCGACAT-AAA--A-G-A-
1 A--T--AATGCATATGGGTGCATTATTGGCATGAAAGGATGCAT
8391085 ATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTCAT
1 ATAATGCATATGGGTGCATTATTGGCATGAAAGGATG-CAT
8391126 A
1 A
8391127 AATAGAATGC
Statistics
Matches: 125, Mismatches: 12, Indels: 44
0.69 0.07 0.24
Matches are distributed among these distances:
34 47 0.38
35 6 0.05
36 2 0.02
37 2 0.02
38 4 0.03
39 2 0.02
40 3 0.02
41 4 0.03
42 2 0.02
43 2 0.02
44 6 0.05
45 45 0.36
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.29
Consensus pattern (40 bp):
ATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCAT
Found at i:8391136 original size:79 final size:79
Alignment explanation
Indices: 8390919--8391126 Score: 344
Period size: 79 Copynumber: 2.6 Consensus size: 79
8390909 GAACGAATGA
* * * * **
8390919 ATAAAAGAATAATGCATATGTGTGCATTATTGGTATAAAAGGATGGCATAGCTGAAATATATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
*
8390984 GGTGCATTATCGGC
66 GGTGCATTATCGAC
8390998 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
8391063 GGTGCATTATCGAC
66 GGTGCATTATCGAC
*
8391077 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGTCATA
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATA
8391127 AATAGAATGC
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 121 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
GGTGCATTATCGAC
Found at i:8391173 original size:46 final size:46
Alignment explanation
Indices: 8391109--8391213 Score: 158
Period size: 46 Copynumber: 2.3 Consensus size: 46
8391099 TGCATTATTG
* *
8391109 GCATGAAAGGATGTCATAAATAGAATGCTTGAAAAGATGCATTAAA
1 GCATGAAAGGATGTCATAAATAAAATGCATGAAAAGATGCATTAAA
* *
8391155 GCATGAAAGGAT-TCCATAAATAAAATGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGT-CATAAATAAAATGCATGAAAAGATGCATTAAA
8391201 GCATGAAAGGATG
1 GCATGAAAGGATG
8391214 CATTAAGGCA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
45 1 0.02
46 52 0.98
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.22
Consensus pattern (46 bp):
GCATGAAAGGATGTCATAAATAAAATGCATGAAAAGATGCATTAAA
Found at i:8391206 original size:20 final size:20
Alignment explanation
Indices: 8391181--8391267 Score: 95
Period size: 20 Copynumber: 4.0 Consensus size: 20
8391171 TAAATAAAAT
8391181 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
8391201 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
*
8391221 GCAT-AGAAGGATGCCATAAATAAAAT
1 GCATGA-AAGGATG-CAT---T--AAG
8391247 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAG
8391267 G
1 G
8391268 TATAAAATGA
Statistics
Matches: 57, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
19 1 0.02
20 34 0.60
21 3 0.05
22 1 0.02
24 1 0.02
25 3 0.05
26 13 0.23
27 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.28, T:0.20
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAG
Found at i:8391244 original size:66 final size:66
Alignment explanation
Indices: 8391138--8391315 Score: 218
Period size: 66 Copynumber: 2.6 Consensus size: 66
8391128 ATAGAATGCT
*
8391138 TGAAAAGATGCATTAAAGCATGAAAGGATTCCATAAATAAAATGCATGAAAGGATGCATTAAGGC
1 TGAAAAGATGCATTAAAGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGC
8391203 A
66 A
* *
8391204 TGAAAGGATGCATTAAGGCAT-AGAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGG
1 TGAAAAGATGCATTAAAGCATGA-AAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGG
*
8391268 TA
65 CA
8391270 T-AAAATGATGCCATAAATAAAATGCATGAAAGGATG-CATTAAATAA
1 TGAAAA-GATG-CAT---T-AAA-GCATGAAAGGATGCCA-TAAATAA
8391316 TAAAAGGATG
Statistics
Matches: 96, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
65 4 0.04
66 65 0.68
67 3 0.03
70 1 0.01
71 4 0.04
72 18 0.19
73 1 0.01
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.22
Consensus pattern (66 bp):
TGAAAAGATGCATTAAAGCATGAAAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGC
A
Found at i:8391251 original size:46 final size:46
Alignment explanation
Indices: 8391201--8391346 Score: 229
Period size: 46 Copynumber: 3.2 Consensus size: 46
8391191 ATGCATTAAG
* *
8391201 GCATGAAAGGATGCATTAAGGCATAGAAGGATGCCATAAATAAAAT
1 GCATGAAAGGATGCATTAAGGAATAAAAGGATGCCATAAATAAAAT
* *
8391247 GCATGAAAGGATGCATTAAGGTATAAAATGATGCCATAAATAAAAT
1 GCATGAAAGGATGCATTAAGGAATAAAAGGATGCCATAAATAAAAT
**
8391293 GCATGAAAGGATGCATTAAATAATAAAAGGATGCCATAAATAAAAT
1 GCATGAAAGGATGCATTAAGGAATAAAAGGATGCCATAAATAAAAT
*
8391339 ACATGAAA
1 GCATGAAA
8391347 ATATGACATA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.21
Consensus pattern (46 bp):
GCATGAAAGGATGCATTAAGGAATAAAAGGATGCCATAAATAAAAT
Found at i:8391313 original size:26 final size:25
Alignment explanation
Indices: 8391109--8391365 Score: 115
Period size: 26 Copynumber: 11.0 Consensus size: 25
8391099 TGCATTATTG
*
8391109 GCATGAAAGGATGTCATAAATAGAAT
1 GCATGAAAGGATG-CATAAATAAAAT
* *
8391135 GCTTGAAAAGATGCAT---T-AAA-
1 GCATGAAAGGATGCATAAATAAAAT
*
8391155 GCATGAAAGGATTCCATAAATAAAAT
1 GCATGAAAGGA-TGCATAAATAAAAT
*
8391181 GCATGAAAGGATGCAT---T--AAG
1 GCATGAAAGGATGCATAAATAAAAT
*
8391201 GCATGAAAGGATGCAT---T--AAG
1 GCATGAAAGGATGCATAAATAAAAT
8391221 GCAT-AGAAGGATGCCATAAATAAAAT
1 GCATGA-AAGGATG-CATAAATAAAAT
8391247 GCATGAAAGGATGCATTAAGGTATAAAAT
1 GCATGAAAGGATGCA-TAA---ATAAAAT
*
8391276 G-AT-----G--CCATAAATAAAAT
1 GCATGAAAGGATGCATAAATAAAAT
8391293 GCATGAAAGGATGCATTAAAT--AAT
1 GCATGAAAGGATGCA-TAAATAAAAT
8391317 --A--AAAGGATGCCATAAATAAAAT
1 GCATGAAAGGATG-CATAAATAAAAT
* **
8391339 ACATGAAAATATGACATAAATAAAAT
1 GCATGAAAGGATG-CATAAATAAAAT
8391365 G
1 G
8391366 AAATTTAATG
Statistics
Matches: 182, Mismatches: 15, Indels: 68
0.69 0.06 0.26
Matches are distributed among these distances:
17 8 0.04
18 2 0.01
19 1 0.01
20 58 0.32
21 13 0.07
22 6 0.03
23 2 0.01
24 6 0.03
25 14 0.08
26 61 0.34
27 1 0.01
28 2 0.01
29 8 0.04
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.22
Consensus pattern (25 bp):
GCATGAAAGGATGCATAAATAAAAT
Found at i:8391322 original size:112 final size:112
Alignment explanation
Indices: 8391115--8391326 Score: 307
Period size: 112 Copynumber: 1.9 Consensus size: 112
8391105 ATTGGCATGA
* * * * *
8391115 AAGGATGTCATAAATAGAATGCTTGAAAAGATGCATTAAAGCATGAAAGGATTCCATAAATAAAA
1 AAGGATGCCATAAATAAAATGCATGAAAAGATGCATTAAAGCATAAAAGGATGCCATAAATAAAA
* * *
8391180 TGCATGAAAGGATGCATTAAGGCATGAAAGGATGCATTAAGGCATAG
66 TGCATGAAAGGATGCATTAAAGAATAAAAGGATGCATTAAGGCATAG
* * * *
8391227 AAGGATGCCATAAATAAAATGCATGAAAGGATGCATTAAGGTATAAAATGATGCCATAAATAAAA
1 AAGGATGCCATAAATAAAATGCATGAAAAGATGCATTAAAGCATAAAAGGATGCCATAAATAAAA
*
8391292 TGCATGAAAGGATGCATTAAATAATAAAAGGATGC
66 TGCATGAAAGGATGCATTAAAGAATAAAAGGATGC
8391327 CATAAATAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 87 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.22
Consensus pattern (112 bp):
AAGGATGCCATAAATAAAATGCATGAAAAGATGCATTAAAGCATAAAAGGATGCCATAAATAAAA
TGCATGAAAGGATGCATTAAAGAATAAAAGGATGCATTAAGGCATAG
Found at i:8391323 original size:20 final size:20
Alignment explanation
Indices: 8391298--8391335 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8391288 AAAATGCATG
8391298 AAAGGATG-CATTAAATAATA
1 AAAGGATGCCA-TAAATAATA
8391318 AAAGGATGCCATAAATAA
1 AAAGGATGCCATAAATAA
8391336 AATACATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.21
Consensus pattern (20 bp):
AAAGGATGCCATAAATAATA
Found at i:8391788 original size:2 final size:2
Alignment explanation
Indices: 8391781--8391852 Score: 135
Period size: 2 Copynumber: 36.0 Consensus size: 2
8391771 GGAAGGATGC
8391781 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8391823 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8391853 CATAAAATGT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8397909 original size:22 final size:21
Alignment explanation
Indices: 8397868--8397921 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
8397858 TACTAAAAGG
* *
8397868 GAGTATCGGTACCATAGTATA
1 GAGTATCGATACCAGAGTATA
* *
8397889 GAAGTATCGATACCAGGGTATT
1 G-AGTATCGATACCAGAGTATA
8397911 GA-TATCGATAC
1 GAGTATCGATAC
8397922 TATTGAGCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 9 0.32
21 2 0.07
22 17 0.61
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (21 bp):
GAGTATCGATACCAGAGTATA
Found at i:8398457 original size:81 final size:81
Alignment explanation
Indices: 8398318--8398815 Score: 759
Period size: 81 Copynumber: 6.1 Consensus size: 81
8398308 TTTTAAAATG
* * * *
8398318 AAAGATTAAATGCCTAACTGTGCATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGT
1 AAAGATTAAATGCCTAGCTATGCATTTGAGAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGT
8398383 TAAATACCTTTGAGTT
66 TAAATACCTTTGAGTT
* * * * * * *
8398399 AAATATTAAATGCCTAGTTGTGTATATGATGA-AAATGTATCAATTATGCTAGTTAGATGAAAGG
1 AAAGATTAAATGCCTAGCTATGCATTTGA-GAGAAATGTGTCAATTATGCCAGTTAGATGAAAGG
*
8398463 TTAAATACGTTTGAGTT
65 TTAAATACCTTTGAGTT
* * * *
8398480 AAAGATTAAATACCTAGCTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGT
1 AAAGATTAAATGCCTAGCTATGCATTTGAGAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGT
8398545 TAAATACCTTTGAGTT
66 TAAATACCTTTGAGTT
*
8398561 AAAGATTAAATGCCTAGCTATGCATTTG-GCAGAAATGTGTCAATTGTGCCAGTTAGATGAAAGG
1 AAAGATTAAATGCCTAGCTATGCATTTGAG-AGAAATGTGTCAATTATGCCAGTTAGATGAAAGG
8398625 TTAAATACCTTTGAGTT
65 TTAAATACCTTTGAGTT
*
8398642 AAAGATTAAATGCCTAGCTATGCATTTG-GCAGAAATGTGTCAATTGTGCCAGTTAGATGAAAGG
1 AAAGATTAAATGCCTAGCTATGCATTTGAG-AGAAATGTGTCAATTATGCCAGTTAGATGAAAGG
8398706 TTAAATACCTTTGAGTT
65 TTAAATACCTTTGAGTT
* * *
8398723 AAAGATTAAATGCCTAGCTATGTATTTGATAGAAATGTGTCAATTATGTCAGTTAGATGAAAGGT
1 AAAGATTAAATGCCTAGCTATGCATTTGAGAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGT
8398788 TAAATACCTTTGAGTT
66 TAAATACCTTTGAGTT
8398804 AAAGATTAAATG
1 AAAGATTAAATG
8398816 ACTACCGAAA
Statistics
Matches: 384, Mismatches: 29, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.00
81 382 0.99
82 1 0.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (81 bp):
AAAGATTAAATGCCTAGCTATGCATTTGAGAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGT
TAAATACCTTTGAGTT
Found at i:8398881 original size:68 final size:68
Alignment explanation
Indices: 8398754--8398883 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 68
8398744 GTATTTGATA
* * * * * ** *
8398754 GAAATGTGTCAATTATGTCAGTTAGATGAAAGGTTAAATACCTTTGAGTTAAAGATTAAATGACT
1 GAAAGGTGCCAATCATGACAGTTAGATGAAAGGTTAAAGACCCATGAGTAAAAGATTAAATGACT
8398819 ACC
66 ACC
* *
8398822 GAAAGGTGCCAATCATGACAGTTAGATTAAAGGTTAAAGGCCCATGAGTAAAAGATTAAATG
1 GAAAGGTGCCAATCATGACAGTTAGATGAAAGGTTAAAGACCCATGAGTAAAAGATTAAATG
8398884 CTTAACAGTG
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 52 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.28
Consensus pattern (68 bp):
GAAAGGTGCCAATCATGACAGTTAGATGAAAGGTTAAAGACCCATGAGTAAAAGATTAAATGACT
ACC
Found at i:8405132 original size:95 final size:95
Alignment explanation
Indices: 8404990--8405163 Score: 260
Period size: 95 Copynumber: 1.8 Consensus size: 95
8404980 ACTGATGTGA
* *
8404990 GTATCGATACCTTGGAATCCAGAGTGTAGAAATGGTATCGATACTG-AAAGGAAGTATCGGTACC
1 GTATCGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTGAAAAGG-AGTATCGGTACC
8405054 ATAGCATAAAAGTATTGGTACTAGGAGAATG
65 ATAGCATAAAAGTATTGGTACTAGGAGAATG
* * * *
8405085 GTATCGATACCATGGATTCTAGAATGTCGAAATGGTATCGATACTGAAAAGGAGTATTGGTACCA
1 GTATCGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCA
* *
8405150 TAGTATAGAAGTAT
66 TAGCATAAAAGTAT
8405164 CGATACCAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 65 0.93
96 5 0.07
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (95 bp):
GTATCGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTGAAAAGGAGTATCGGTACCA
TAGCATAAAAGTATTGGTACTAGGAGAATG
Found at i:8405188 original size:95 final size:95
Alignment explanation
Indices: 8404994--8405189 Score: 243
Period size: 95 Copynumber: 2.1 Consensus size: 95
8404984 ATGTGAGTAT
* *
8404994 CGATACCTTGGAATCCAGAGTGTAGAAATGGTATCGATACTGAAAGGAAGTATCGGTACCATAGC
1 CGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTGAAAGGAAGTATCGGTACCATAGC
* * * *
8405059 ATAAAAGTATTGGTACTAGGAGAATGGTAT
66 ATAAAAGTATCGATACCAGGAGAATGGTAC
* * * *
8405089 CGATACCATGGATTCTAGAATGTCGAAATGGTATCGATACTGAAAAGG-AGTATTGGTACCATAG
1 CGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTG-AAAGGAAGTATCGGTACCATAG
* * *
8405153 TATAGAAGTATCGATACCAGG-GTATGTGTAC
65 CATAAAAGTATCGATACCAGGAGAATG-GTAC
8405184 CGATAC
1 CGATAC
8405190 TATTGAGTCA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 4 0.05
95 77 0.90
96 5 0.06
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (95 bp):
CGATACCATGGAATCCAGAATGTAGAAATGGTATCGATACTGAAAGGAAGTATCGGTACCATAGC
ATAAAAGTATCGATACCAGGAGAATGGTAC
Found at i:8405849 original size:81 final size:81
Alignment explanation
Indices: 8405590--8405845 Score: 368
Period size: 81 Copynumber: 3.2 Consensus size: 81
8405580 AAAATGAAAT
* * * *
8405590 ATTAAATACCTAGCTGTGCATTTGATAGAAAGGCGTCAATTATGCCAGTTAGATGAAAGGTTAAA
1 ATTAAATGCCTAGCTGTGCATTTGACAGAAATGAGTCAATTATGCCAGTTAGATGAAAGGTTAAA
8405655 TACCTTTGAGTTAAAG
66 TACCTTTGAGTTAAAG
* * * *
8405671 ATTAAATGCCTAGCTATGCATTTGACAGAAATGTGTCAATTATGCCAGCTAGGTGAAAGGTTAAA
1 ATTAAATGCCTAGCTGTGCATTTGACAGAAATGAGTCAATTATGCCAGTTAGATGAAAGGTTAAA
8405736 TACCTTTGAGTTAAAG
66 TACCTTTGAGTTAAAG
* * * * * *
8405752 ATTAAATGCCTAGTTGTGCATTTAACATAAATGAGTCAATTATTCCATTTACATGAAAGGTTAAA
1 ATTAAATGCCTAGCTGTGCATTTGACAGAAATGAGTCAATTATGCCAGTTAGATGAAAGGTTAAA
**
8405817 TATATTTGAGTTAAAG
66 TACCTTTGAGTTAAAG
8405833 ATTAAATGCCTAG
1 ATTAAATGCCTAG
8405846 TTGTTTATTT
Statistics
Matches: 156, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 156 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (81 bp):
ATTAAATGCCTAGCTGTGCATTTGACAGAAATGAGTCAATTATGCCAGTTAGATGAAAGGTTAAA
TACCTTTGAGTTAAAG
Found at i:8409912 original size:20 final size:20
Alignment explanation
Indices: 8409889--8409941 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
8409879 CATTCATTAA
8409889 CTCATGTCATGTTATTCTAG
1 CTCATGTCATGTTATTCTAG
*
8409909 CTCATGTCATGTTATTCTAT
1 CTCATGTCATGTTATTCTAG
*
8409929 CTCATGTTATGTT
1 CTCATGTCATGTT
8409942 TACATTAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (20 bp):
CTCATGTCATGTTATTCTAG
Found at i:8413072 original size:23 final size:23
Alignment explanation
Indices: 8413041--8413102 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
8413031 TGGTAGTGAA
* *
8413041 TCAGCAGCTTCTAGAAGATCCAG
1 TCAGTAGCTTCTAGAAGATACAG
* *
8413064 TCAGTAGCTTCTAGAAGGTACAT
1 TCAGTAGCTTCTAGAAGATACAG
8413087 TCAGTAGCTTCTAGAA
1 TCAGTAGCTTCTAGAA
8413103 TATGGATAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (23 bp):
TCAGTAGCTTCTAGAAGATACAG
Found at i:8413367 original size:15 final size:15
Alignment explanation
Indices: 8413347--8413375 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8413337 TTCTTTCCTT
8413347 TTTCTTTTACTTTAG
1 TTTCTTTTACTTTAG
8413362 TTTCTTTTACTTTA
1 TTTCTTTTACTTTA
8413376 AAGTTTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTCTTTTACTTTAG
Found at i:8420428 original size:30 final size:29
Alignment explanation
Indices: 8420372--8420428 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
8420362 GAAAATCTTT
8420372 GGGTCATTTTGTAATTTTTCAAAAGTTGA
1 GGGTCATTTTGTAATTTTTCAAAAGTTGA
*
8420401 GGGTCATATTTGATAA-TTTTGAAAAGTT
1 GGGTCAT-TTTG-TAATTTTTCAAAAGTT
8420429 ATGTGTTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 7 0.28
30 15 0.60
31 3 0.12
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (29 bp):
GGGTCATTTTGTAATTTTTCAAAAGTTGA
Done.