Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 62
Found at i:8680358 original size:5 final size:5
Alignment explanation
Indices: 8680269--8680431 Score: 53
Period size: 5 Copynumber: 33.6 Consensus size: 5
8680259 GTTTTTTCCC
* * * *
8680269 TTTTGA TTTTA TTTTTG TTTTA -TTAA TTTTA -TTAA TTTT- TATTAA
1 TTTT-A TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA
* * * *
8680314 TTTTA -TTAA TTTTA -TTTA TTTGA TTTGA TTTGA -TTT- TTTTA TTTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* * * *
8680361 TCTTTA TTTTA -TTTA TGTTA ATAT- TTTTA TTTTTA TCTTT- TATTA
1 T-TTTA TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA T-TTTA TTTTA
* *
8680406 TTTTA -TTTA TGTTC TTTTA -TTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
8680432 AGCTATTTTT
Statistics
Matches: 115, Mismatches: 24, Indels: 37
0.65 0.14 0.21
Matches are distributed among these distances:
4 35 0.30
5 53 0.46
6 27 0.23
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:8680375 original size:9 final size:9
Alignment explanation
Indices: 8680286--8680432 Score: 83
Period size: 9 Copynumber: 16.0 Consensus size: 9
8680276 TTTATTTTTG
*
8680286 TTTTATTAA
1 TTTTATTTA
*
8680295 TTTTATTAA
1 TTTTATTTA
*
8680304 TTTTTATTAA
1 -TTTTATTTA
*
8680314 TTTTATTAA
1 TTTTATTTA
8680323 TTTTATTTA
1 TTTTATTTA
*
8680332 TTTGATTTGA
1 TTTTATTT-A
*
8680342 TTTGATTT-
1 TTTTATTTA
8680350 TTTTATTT-
1 TTTTATTTA
* *
8680358 TTATCTTTA
1 TTTTATTTA
8680367 TTTTATTTA
1 TTTTATTTA
8680376 TGTTAATATTT-
1 T-TT--TATTTA
8680387 TTATT-TTTA
1 TT-TTATTTA
8680396 TCTTT-TATTA
1 T-TTTAT-TTA
8680406 TTTTATTTA
1 TTTTATTTA
8680415 TGTTCT-TTTA
1 T-TT-TATTTA
8680425 -TTTATTTA
1 TTTTATTTA
8680433 GCTATTTTTA
Statistics
Matches: 117, Mismatches: 7, Indels: 29
0.76 0.05 0.19
Matches are distributed among these distances:
7 1 0.01
8 22 0.19
9 53 0.45
10 33 0.28
11 3 0.03
12 5 0.04
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.71
Consensus pattern (9 bp):
TTTTATTTA
Found at i:8680401 original size:7 final size:6
Alignment explanation
Indices: 8680349--8680404 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
8680339 TGATTTGATT
* * * **
8680349 TTTTTA TTTTTA TCTTTA -TTTTA TTTATG TTAATA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
8680396 TCTTTTA TT
1 T-TTTTA TT
8680405 ATTTTATTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
5 4 0.10
6 30 0.75
7 6 0.15
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:8680407 original size:39 final size:39
Alignment explanation
Indices: 8680323--8680418 Score: 112
Period size: 35 Copynumber: 2.5 Consensus size: 39
8680313 ATTTTATTAA
* * *
8680323 TTTTATTTATTTGATTTGAT-TTGATTTTTTTATTTTTATC
1 TTTTA-TTATTTTATTT-ATGTTAATATTTTTATTTTTATC
8680363 ---T-TTATTTTATTTATGTTAATATTTTTATTTTTATC
1 TTTTATTATTTTATTTATGTTAATATTTTTATTTTTATC
8680398 TTTTATTATTTTATTTATGTT
1 TTTTATTATTTTATTTATGTT
8680419 CTTTTATTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
34 2 0.04
35 28 0.58
37 1 0.02
38 1 0.02
39 16 0.33
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (39 bp):
TTTTATTATTTTATTTATGTTAATATTTTTATTTTTATC
Found at i:8680414 original size:19 final size:18
Alignment explanation
Indices: 8680274--8680432 Score: 80
Period size: 19 Copynumber: 8.6 Consensus size: 18
8680264 TTCCCTTTTG
*
8680274 ATTTTATTTTTGTTTTATT
1 ATTTTATTTAT-TTTTATT
*
8680293 AATTTTATTAATTTTTATT
1 -ATTTTATTTATTTTTATT
*
8680312 AATTTTA-TTAATTTTATTT
1 -ATTTTATTTATTTTTA-TT
* *
8680331 ATTTGATTTGA-TTTGATT
1 ATTTTATTT-ATTTTTATT
* *
8680349 TTTTTATTT-TTATCT-TT
1 ATTTTATTTATT-TTTATT
*
8680366 ATTTTATTTATGTTAATATT
1 ATTTTATTTAT-TT-TTATT
*
8680386 -TTTATTTTTATCTTTTATT
1 ATTT-TATTTAT-TTTTATT
8680405 ATTTTATTTATGTTCTT-TT
1 ATTTTATTTAT-TT-TTATT
8680424 A-TTTATTTA
1 ATTTTATTTA
8680433 GCTATTTTTA
Statistics
Matches: 110, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
17 11 0.10
18 32 0.29
19 42 0.38
20 25 0.23
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.72
Consensus pattern (18 bp):
ATTTTATTTATTTTTATT
Found at i:8681511 original size:2 final size:2
Alignment explanation
Indices: 8681504--8681966 Score: 149
Period size: 2 Copynumber: 234.0 Consensus size: 2
8681494 TTAAAACAAT
8681504 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
8681546 T- TA TA -A CA TA TA TA TA TA TA TA TA -A TGA -A TG T- TA TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA T-A TA
* * * * * * *
8681585 GTA TGA TG CA TG TA TA TA TA -A TG TA CA T- TA TA CT- TG TG TA
1 -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
8681625 TA GA T- TA -A TA CA T- TA -A AA CA T- TA TA -A GTA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* *
8681662 TA TA TA TA TA -A GTA TA TA -A T- TA -A TA TA -A AA GTA TA TA CA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
8681701 TA TA -A GTA TA TA TA TA TA TA TA CA CT- TA TT TA AA TA TA CA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* * * * * *
8681743 TA TA AA TA AA GTA TA -A GTA TA TA TA TA AA GTG TA AA CTA TA AA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA TA TA -TA TA TA
* ** *
8681786 CTA TA TA TA TA -A TA TA TA TA AA CTA TA -A GG TA TA TA TA CTC
1 -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA
* *
8681827 TA AA GTG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
8681870 TA TA TA AA GTA TA -A GTA TA T- TA TA -A GTA TA TA TA TA AA CTA
1 TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA -TA
* * * * *
8681911 TA -A AA TA TA TA TA CTT TA TA CTA -A AA CTT TA TA TA AA T- TA
1 TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA
8681951 TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
8681967 CAAAGTTTTA
Statistics
Matches: 341, Mismatches: 65, Indels: 110
0.66 0.13 0.21
Matches are distributed among these distances:
1 30 0.09
2 286 0.84
3 25 0.07
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.42
Consensus pattern (2 bp):
TA
Found at i:8682049 original size:15 final size:15
Alignment explanation
Indices: 8682029--8682117 Score: 60
Period size: 15 Copynumber: 5.7 Consensus size: 15
8682019 ATAAAGACTA
8682029 AAGTATATAAATATT
1 AAGTATATAAATATT
*
8682044 AAGTATAAGTATTAAATATAA
1 AAG--T-A-TA-TAAATAT-T
8682065 AAGTATA-AAAGTATT
1 AAGTATATAAA-TATT
8682080 AAG--TATAAATATAT
1 AAGTATATAAATAT-T
*
8682094 AAGTAT-TAAATATA
1 AAGTATATAAATATT
8682108 AAGTATATAA
1 AAGTATATAA
8682118 GTATATATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 24
0.69 0.03 0.28
Matches are distributed among these distances:
13 5 0.08
14 13 0.22
15 19 0.32
16 4 0.07
17 3 0.05
18 2 0.03
19 3 0.05
20 7 0.12
21 3 0.05
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (15 bp):
AAGTATATAAATATT
Found at i:8682055 original size:21 final size:20
Alignment explanation
Indices: 8682029--8682136 Score: 101
Period size: 21 Copynumber: 5.1 Consensus size: 20
8682019 ATAAAGACTA
*
8682029 AAGTATATAAATATTAAGTAT
1 AAGTAT-TAAATATAAAGTAT
8682050 AAGTATTAAATATAAAAGTAT
1 AAGTATTAAATAT-AAAGTAT
* *
8682071 AAAAGTATTAAGTATAAATATAT
1 --AAGTATTAAATATAAA-GTAT
8682094 AAGTATTAAATATAAAGTATAT
1 AAGTATTAAATATAAAG--TAT
* *
8682116 AAGTA-TATATATAAACTAT
1 AAGTATTAAATATAAAGTAT
8682135 AA
1 AA
8682137 AGTGTGTGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
19 5 0.07
20 7 0.09
21 36 0.49
22 11 0.15
23 15 0.20
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (20 bp):
AAGTATTAAATATAAAGTAT
Found at i:8682073 original size:8 final size:8
Alignment explanation
Indices: 8682050--8682122 Score: 59
Period size: 8 Copynumber: 9.9 Consensus size: 8
8682040 TATTAAGTAT
*
8682050 AAGTATTA
1 AAGTATAA
8682058 AA-TATAA
1 AAGTATAA
8682065 AAGTATAA
1 AAGTATAA
*
8682073 AAGTAT-T
1 AAGTATAA
8682080 AAGTAT-A
1 AAGTATAA
*
8682087 AA-TATAT
1 AAGTATAA
*
8682094 AAGTATTA
1 AAGTATAA
8682102 AA-TAT-A
1 AAGTATAA
*
8682108 AAGTATAT
1 AAGTATAA
8682116 AAGTATA
1 AAGTATA
8682123 TATATAAACT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
6 6 0.11
7 22 0.42
8 25 0.47
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (8 bp):
AAGTATAA
Found at i:8682080 original size:36 final size:37
Alignment explanation
Indices: 8682028--8682137 Score: 124
Period size: 36 Copynumber: 3.1 Consensus size: 37
8682018 TATAAAGACT
*
8682028 AAAGTATATAAA-TATTAAGTATAAGTAT-TAAATATA
1 AAAGTATA-AAAGTATTAAGTATAAATATATAAATATA
* *
8682064 AAAGTATAAAAGTATTAAGTATAAATATATAAGTATT
1 AAAGTATAAAAGTATTAAGTATAAATATATAAATATA
8682101 AAA-TAT-AAAGTATATAAGTAT--ATATATAAACTATA
1 AAAGTATAAAAGTAT-TAAGTATAAATATATAAA-TATA
8682136 AA
1 AA
8682138 GTGTGTGTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
34 8 0.12
35 15 0.23
36 33 0.51
37 9 0.14
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (37 bp):
AAAGTATAAAAGTATTAAGTATAAATATATAAATATA
Found at i:8682150 original size:2 final size:2
Alignment explanation
Indices: 8682145--8682260 Score: 65
Period size: 2 Copynumber: 55.0 Consensus size: 2
8682135 AAAGTGTGTG
* * *
8682145 TA TA TA TA TA TA TA TA TA TA TA TA TA AA GT- TT TA GTA TA AA GTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA
* * *
8682189 TA TA -A GTA TA TA AA TA AA CTA TA AA GTA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
* * *
8682231 TA TA TT TA TA CTT TA TA GTT TA TA TA TA TA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA
8682261 CACTTATGCA
Statistics
Matches: 87, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
1 2 0.02
2 77 0.89
3 8 0.09
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:8682199 original size:34 final size:32
Alignment explanation
Indices: 8682068--8682235 Score: 82
Period size: 34 Copynumber: 5.2 Consensus size: 32
8682058 AATATAAAAG
*
8682068 TATA-AAAGTATTAAGTATAAATATATAAGTATTA
1 TATATAAAGTATTTA-TATAAATATATAA-TA-TA
* *
8682102 AATATAAAG----TATATAAGTATAT-ATATA
1 TATATAAAGTATTTATATAAATATATAATATA
* * *
8682129 AACTATAAAGTGTGTGTATATATATATATATATATA
1 TA-TATAAAGTAT-T-TATATAAATATATA-ATATA
8682165 TATATAAAGT-TTTAGTATAAAGTATATAAGTATA
1 TATATAAAGTATTTA-TATAAA-TATATAA-TATA
* * ** *
8682199 TAAATAAACTATAAAGTATATATATAT-ATATA
1 TATATAAAGTATTTA-TATAAATATATAATATA
8682231 TATAT
1 TATAT
8682236 TTATACTTTA
Statistics
Matches: 107, Mismatches: 13, Indels: 30
0.71 0.09 0.20
Matches are distributed among these distances:
27 4 0.04
28 9 0.08
29 1 0.01
30 10 0.09
31 1 0.01
32 10 0.09
33 8 0.07
34 38 0.36
35 20 0.19
36 6 0.06
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.40
Consensus pattern (32 bp):
TATATAAAGTATTTATATAAATATATAATATA
Found at i:8682279 original size:43 final size:42
Alignment explanation
Indices: 8682215--8682572 Score: 192
Period size: 44 Copynumber: 8.4 Consensus size: 42
8682205 AACTATAAAG
*
8682215 TATATA-TATATATA-TATATATTTATACTT-TATAGTTTATAT
1 TATATACT-TATATACTTTATATTTATACTTATATA-TTTATAT
* ** *
8682256 ATATACACTTATGCACTTTATATTTAATACTTATATACTTATAT
1 -TATATACTTATATACTTTATATTT-ATACTTATATATTTATAT
*
8682300 T-TGATACTTATATACGTTATATTTTATACTTATATACTTTATAT
1 TAT-ATACTTATATACTTTATA-TTTATACTTATATA-TTTATAT
* *
8682344 T-TAATACTTATATATTTTATATTACATACTTATATATTT-TA-
1 TAT-ATACTTATATACTTTATATT-TATACTTATATATTTATAT
* *
8682385 TAT-TA-TTATATACATATATATTATATACGTATATGTACTTTATAT
1 TATATACTTATATAC-TTTATATT-TATAC-T-TATATA-TTTATAT
* * *
8682430 T-TAATATTTGTATATTTTATATTATATACTAATTATATACTTTATAT
1 TAT-ATACTTATATACTTTATATT-TATAC---TTATATA-TTTATAT
* * ** * *
8682477 TATATGCTTTTATACTTTAGTCGTTATAGTTATA-CTTTATA-
1 TATATACTTATATACTTTA-TATTTATACTTATATATTTATAT
* * *
8682518 TATATA-TAATATAC-TTATACTTTATA-TTAT-TATATATGT
1 TATATACTTATATACTTTATA-TTTATACTTATATATTTATAT
8682557 ATATATACTT-TATACT
1 -TATATACTTATATACT
8682573 AAAACTTTTT
Statistics
Matches: 248, Mismatches: 40, Indels: 57
0.72 0.12 0.17
Matches are distributed among these distances:
38 9 0.04
39 15 0.06
40 31 0.12
41 8 0.03
42 24 0.10
43 43 0.17
44 58 0.23
45 5 0.02
46 15 0.06
47 36 0.15
48 4 0.02
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (42 bp):
TATATACTTATATACTTTATATTTATACTTATATATTTATAT
Found at i:8682291 original size:13 final size:13
Alignment explanation
Indices: 8682273--8682356 Score: 52
Period size: 13 Copynumber: 6.5 Consensus size: 13
8682263 CTTATGCACT
8682273 TTATATTTAATAC
1 TTATATTTAATAC
*
8682286 TTATATACTT-ATAT
1 TTATAT--TTAATAC
*
8682300 TTGATACTTATATAC
1 TT-ATATTTA-ATAC
*
8682315 GTTATATTTTATAC
1 -TTATATTTAATAC
*
8682329 TTATA--TACT--
1 TTATATTTAATAC
8682338 TTATATTTAATAC
1 TTATATTTAATAC
8682351 TTATAT
1 TTATAT
8682357 ATTTTATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 20
0.65 0.10 0.25
Matches are distributed among these distances:
9 5 0.09
11 5 0.09
13 19 0.36
14 9 0.17
15 13 0.25
16 2 0.04
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (13 bp):
TTATATTTAATAC
Found at i:8682295 original size:22 final size:22
Alignment explanation
Indices: 8682223--8682495 Score: 201
Period size: 22 Copynumber: 12.5 Consensus size: 22
8682213 AGTATATATA
*
8682223 TATATA-TATATATTT-ATACT
1 TATATACTTTATATTTAATACT
* * *
8682243 T-TATAGTTTATATATATACACT
1 TATATACTTTATATTTA-ATACT
**
8682265 TATGCACTTTATATTTAATACT
1 TATATACTTTATATTTAATACT
*
8682287 TATATAC-TTATATTTGATACT
1 TATATACTTTATATTTAATACT
* *
8682308 TATATACGTTATATTTTATACT
1 TATATACTTTATATTTAATACT
8682330 TATATACTTTATATTTAATACT
1 TATATACTTTATATTTAATACT
*
8682352 TATATATTTTATA-TTACATACT
1 TATATACTTTATATTTA-ATACT
*
8682374 TATATA-TTT-TA--TATTA-T
1 TATATACTTTATATTTAATACT
*
8682391 TATATACATATATATTAT-ATACGT
1 TATATAC-TTTATATT-TAATAC-T
* *
8682415 ATATGTACTTTATATTTAATATT
1 -TATATACTTTATATTTAATACT
* * *
8682438 TGTATATTTTATATTATATACTAAT
1 TATATACTTTATATT-TA-A-TACT
*
8682463 TATATACTTTATA-TTATATGCT
1 TATATACTTTATATTTA-ATACT
*
8682485 TTTATACTTTA
1 TATATACTTTA
8682496 GTCGTTATAG
Statistics
Matches: 204, Mismatches: 30, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
17 7 0.03
18 2 0.01
19 8 0.04
20 12 0.06
21 26 0.13
22 96 0.47
23 20 0.10
24 13 0.06
25 20 0.10
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (22 bp):
TATATACTTTATATTTAATACT
Found at i:8682321 original size:9 final size:8
Alignment explanation
Indices: 8682229--8682493 Score: 112
Period size: 7 Copynumber: 35.1 Consensus size: 8
8682219 TATATATATA
8682229 TATATA-T
1 TATATACT
8682236 T-TATACT
1 TATATACT
*
8682243 T-TATAGT
1 TATATACT
8682250 T-TATA-T
1 TATATACT
*
8682256 ATATACACT
1 -TATATACT
**
8682265 TATGCACT
1 TATATACT
*
8682273 T-TATATT
1 TATATACT
8682280 TA-ATACT
1 TATATACT
8682287 TATATACT
1 TATATACT
8682295 TATAT--T
1 TATATACT
*
8682301 T-GATACT
1 TATATACT
8682308 TATATACGT
1 TATATAC-T
8682317 TATAT--T
1 TATATACT
8682323 T-TATACT
1 TATATACT
8682330 TATATACT
1 TATATACT
*
8682338 T-TATATT
1 TATATACT
8682345 TA-ATACT
1 TATATACT
8682352 TATATA-T
1 TATATACT
*
8682359 TTTATA-T
1 TATATACT
*
8682366 TACATACT
1 TATATACT
*
8682374 TATATATTT
1 TATATA-CT
8682383 TATATTA-T
1 TATA-TACT
*
8682391 TATATACA
1 TATATACT
8682399 TATATA-T
1 TATATACT
8682406 TATATACGT
1 TATATAC-T
*
8682415 ATATGTACT
1 -TATATACT
*
8682424 T-TATATT
1 TATATACT
*
8682431 TA-ATATT
1 TATATACT
*
8682438 TGTATA-T
1 TATATACT
*
8682445 TTTATA-T
1 TATATACT
8682452 TATATACTAAT
1 TATATAC---T
8682463 TATATACT
1 TATATACT
8682471 T-TATA-T
1 TATATACT
*
8682477 TATATGCT
1 TATATACT
*
8682485 TTTATACT
1 TATATACT
8682493 T
1 T
8682494 TAGTCGTTAT
Statistics
Matches: 201, Mismatches: 27, Indels: 59
0.70 0.09 0.21
Matches are distributed among these distances:
5 5 0.02
6 11 0.05
7 89 0.44
8 66 0.33
9 14 0.07
10 8 0.04
11 8 0.04
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (8 bp):
TATATACT
Found at i:8682340 original size:15 final size:15
Alignment explanation
Indices: 8682237--8682493 Score: 101
Period size: 15 Copynumber: 16.9 Consensus size: 15
8682227 TATATATATT
*
8682237 TATACTTTATAGTTTA
1 TATACTTTATA-CTTA
* *
8682253 TATA-TATACACTTA
1 TATACTTTATACTTA
** *
8682267 TGCACTTTATATTTA
1 TATACTTTATACTTA
8682282 -ATACTTATATACTTA
1 TATACTT-TATACTTA
*
8682297 TAT--TTGATACTTA
1 TATACTTTATACTTA
* *
8682310 TATACGTTATA-TTT
1 TATACTTTATACTTA
8682324 TATACTTATATACTT-
1 TATACTT-TATACTTA
8682339 TATA-TTTAATACTTA
1 TATACTTT-ATACTTA
*
8682354 TATATTTTATA-TTA
1 TATACTTTATACTTA
* *
8682368 CATACTTATATATTTTA
1 TATACTT-TATA-CTTA
*
8682385 TATTA-TTATATACATA
1 TA-TACTT-TATACTTA
8682401 TATA-TTATATACGTATA
1 TATACTT-TATAC-T-TA
* *
8682418 TGTACTTTATATTTA
1 TATACTTTATACTTA
* *
8682433 -ATATTTGTATA-TTT
1 TATACTT-TATACTTA
8682447 TATA-TTATATACTAATTA
1 TATACTT-TATAC---TTA
8682465 TATACTTTATA-TTA
1 TATACTTTATACTTA
*
8682479 TATGCTTTTATACTT
1 TATAC-TTTATACTT
8682494 TAGTCGTTAT
Statistics
Matches: 185, Mismatches: 30, Indels: 52
0.69 0.11 0.19
Matches are distributed among these distances:
13 11 0.06
14 54 0.29
15 66 0.36
16 18 0.10
17 20 0.11
18 14 0.08
19 2 0.01
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACTTTATACTTA
Found at i:8682444 original size:86 final size:84
Alignment explanation
Indices: 8682221--8682479 Score: 240
Period size: 86 Copynumber: 3.0 Consensus size: 84
8682211 AAAGTATATA
* * * * ** *
8682221 TATATATATATATATT-TATACTT-TATAGTTTATATATATACACTTATGCACTTTATATTTA-A
1 TATATACAT-TATATTATATACTTATATACTTTATATTTA-ATACTTATATATTTTATA-TTACA
*
8682283 TAC-TTATATACTTATATTTGATACT
63 TACATTATATACTT-TATAT--TA-T
* *
8682308 TATATACGTTATATTTTATACTTATATACTTTATATTTAATACTTATATATTTTATATTACATAC
1 TATATACATTATATTATATACTTATATACTTTATATTTAATACTTATATATTTTATATTACATAC
*
8682373 -TTATATATTTTATATTAT
66 ATTATATACTTTATATTAT
* * * *
8682391 TATATACATATATATTATATACGTATATGTACTTTATATTTAATATTTGTATATTTTATATTATA
1 TATATACAT-TATATTATATAC-T-TATATACTTTATATTTAATACTTATATATTTTATATTACA
8682456 TACTAATTATATACTTTATATTAT
63 TAC--ATTATATACTTTATATTAT
8682480 ATGCTTTTAT
Statistics
Matches: 146, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
83 9 0.06
84 13 0.09
85 1 0.01
86 52 0.36
87 41 0.28
88 13 0.09
89 17 0.12
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (84 bp):
TATATACATTATATTATATACTTATATACTTTATATTTAATACTTATATATTTTATATTACATAC
ATTATATACTTTATATTAT
Found at i:8682478 original size:25 final size:24
Alignment explanation
Indices: 8682339--8682570 Score: 100
Period size: 25 Copynumber: 9.8 Consensus size: 24
8682329 TTATATACTT
*
8682339 TATATTTA-ATACTTATATATT-T-
1 TATAATTATATACTT-TATATTATA
* *
8682361 TAT-ATTACATACTTATATATTTTA
1 TATAATTATATACTT-TATATTATA
* *
8682385 TATTATTATATACATATATATTATA
1 TATAATTATATAC-TTTATATTATA
*
8682410 TACGT-A-TATGTACTTTATATT-TA
1 TA--TAATTATATACTTTATATTATA
* * *
8682433 -ATATTTGTATATTTTATATTATA
1 TATAATTATATACTTTATATTATA
8682456 TACTAATTATATACTTTATATTATA
1 TA-TAATTATATACTTTATATTATA
* * **
8682481 TGCT--TT-TATACTTTA-GTCGT-
1 T-ATAATTATATACTTTATATTATA
*
8682501 TAT-AGT-TATACTTTATA-TATA
1 TATAATTATATACTTTATATTATA
8682522 TATAATATACTTATACTTTATATTATTA
1 TATAAT-TA--TATACTTTATATTA-TA
*
8682550 TATATGTATATATACTTTATA
1 TATA-AT-TATATACTTTATA
8682571 CTAAAACTTT
Statistics
Matches: 162, Mismatches: 24, Indels: 43
0.71 0.10 0.19
Matches are distributed among these distances:
19 1 0.01
20 13 0.08
21 8 0.05
22 39 0.24
23 8 0.05
24 11 0.07
25 45 0.28
26 13 0.08
27 14 0.09
28 6 0.04
29 4 0.02
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.54
Consensus pattern (24 bp):
TATAATTATATACTTTATATTATA
Found at i:8682535 original size:26 final size:26
Alignment explanation
Indices: 8682501--8682637 Score: 86
Period size: 26 Copynumber: 4.9 Consensus size: 26
8682491 CTTTAGTCGT
8682501 TATAGTTATACTTTATA-TA-TATATAA
1 TATA-TTATACTTTATATTATTATAT-A
8682527 TATACTTATACTTTATATTATTATATA
1 TATA-TTATACTTTATATTATTATATA
* *
8682554 TGTATATATACTTTATACTAAAACTTTTTATATA
1 TATAT-TATAC-TT-TA-T---A-TTATTATATA
*
8682588 TATAATATATACTTTATAGTTATTTTATA
1 TAT-AT-TATACTTTATA-TTATTATATA
8682617 TATA-TATACTTT-TATT-TTATA
1 TATATTATACTTTATATTATTATA
8682638 GTTTACACAC
Statistics
Matches: 92, Mismatches: 8, Indels: 25
0.74 0.06 0.20
Matches are distributed among these distances:
23 4 0.04
24 2 0.02
25 2 0.02
26 25 0.27
27 11 0.12
28 8 0.09
29 14 0.15
30 1 0.01
32 1 0.01
33 3 0.03
34 13 0.14
35 8 0.09
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (26 bp):
TATATTATACTTTATATTATTATATA
Found at i:8682649 original size:2 final size:2
Alignment explanation
Indices: 8682642--8682684 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8682632 TTTATAGTTT
8682642 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
8682684 A
1 A
8682685 TATATATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8682689 original size:2 final size:2
Alignment explanation
Indices: 8682684--8682893 Score: 102
Period size: 2 Copynumber: 104.5 Consensus size: 2
8682674 ACACACACAC
*
8682684 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
* * *
8682727 AT ACT TT AT AT TT A- AT ACT -T AT ACT TT AT AT AT A- AT AT AT
1 AT A-T AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT
* * *
8682767 AT ACT -T AT ACT TT AT GT -T AT -T AT AT AT GT AT AT AT ACT -T
1 AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
* * * * *
8682806 AT ACT TT AT AT GT AT AT AT ACT TT AGT CT TT AT A- AGT AT AT -T
1 AT A-T AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT A-T AT AT AT
*
8682848 AT AT AT AT AT AT AT A- AT AT ACT -T AT CAT TT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT -AT AT AT AT AT AT AT AT
8682889 AT AT A
1 AT AT A
8682894 ATTTATAATT
Statistics
Matches: 159, Mismatches: 24, Indels: 50
0.68 0.10 0.21
Matches are distributed among these distances:
1 12 0.08
2 132 0.83
3 15 0.09
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8682758 original size:33 final size:30
Alignment explanation
Indices: 8682691--8682907 Score: 130
Period size: 31 Copynumber: 6.9 Consensus size: 30
8682681 CACATATATA
*
8682691 TATATATATATATATATATATA-TGATATAC-A
1 TATATATATATATATAT-TATACT--TATACTT
*
8682722 TATATATACTTTATAT-TTAATACTTATACTT
1 TATATATA-TATATATATT-ATACTTATACTT
8682753 TATATATAATATATATACTTATACTT-TA-TGT
1 TATATAT-ATATATATA-TTATACTTATACT-T
*
8682784 TAT-TATATATGTATA-TATACTTATACTT
1 TATATATATATATATATTATACTTATACTT
* *
8682812 TATATGTATATATACT-TTAGT-CTTTATAAGTATAT
1 TATATATATATATA-TATTA-TAC-TTAT-A--CT-T
*
8682847 TATATATATATATATAATATACTTAT-CATT
1 TATATATATATATATATTATACTTATAC-TT
*
8682877 TATATTATATATATATAATTTATAATTATAC
1 TATA-TATATATATAT-A-TTATACTTATAC
8682908 ATAATTTATA
Statistics
Matches: 148, Mismatches: 12, Indels: 49
0.71 0.06 0.23
Matches are distributed among these distances:
27 7 0.05
28 6 0.04
29 17 0.11
30 19 0.13
31 48 0.32
32 16 0.11
33 10 0.07
34 8 0.05
35 17 0.11
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (30 bp):
TATATATATATATATATTATACTTATACTT
Found at i:8682764 original size:27 final size:29
Alignment explanation
Indices: 8682724--8682830 Score: 96
Period size: 33 Copynumber: 3.6 Consensus size: 29
8682714 GATATACATA
8682724 TATATACTT-TATATTTAATACTTATACTT
1 TATATA-TTATATATTTAATACTTATACTT
*
8682753 TATATA-TA-ATATAT-ATACTTATACTT
1 TATATATTATATATTTAATACTTATACTT
*
8682779 TATGTTATTATATATGTATATATACTTATACTT
1 TAT-ATATTATATAT-T-TA-ATACTTATACTT
*
8682812 TATATGTATATATACTTTA
1 TATATAT-TATATA-TTTA
8682831 GTCTTTATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
26 15 0.24
27 8 0.13
28 2 0.03
29 10 0.16
31 1 0.02
32 4 0.06
33 22 0.35
34 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.53
Consensus pattern (29 bp):
TATATATTATATATTTAATACTTATACTT
Found at i:8682792 original size:17 final size:17
Alignment explanation
Indices: 8682684--8682862 Score: 96
Period size: 17 Copynumber: 10.8 Consensus size: 17
8682674 ACACACACAC
*
8682684 ATATATATATATA-TAT
1 ATATATATATATACTTT
*
8682700 ATATATATATATA-TGAT
1 ATATATATATATACT-TT
*
8682717 ATACATATATATACTTT
1 ATATATATATATACTTT
8682734 ATAT-T-TA-ATAC-TT
1 ATATATATATATACTTT
* *
8682747 ATACTTTATATATA--AT
1 ATA-TATATATATACTTT
8682763 ATATATACT-TATACTTT
1 ATATATA-TATATACTTT
* *
8682780 ATGT-TATTATATA-TGT
1 ATATATA-TATATACTTT
8682796 ATATATACT-TATACTTT
1 ATATATA-TATATACTTT
*
8682813 ATATGTATATATACTTT
1 ATATATATATATACTTT
* *
8682830 AGTCTTTATAAGTATA-TTAT
1 A-TATATAT-A-TATACTT-T
8682850 ATATATATATATA
1 ATATATATATATA
8682863 ATATACTTAT
Statistics
Matches: 129, Mismatches: 17, Indels: 33
0.72 0.09 0.18
Matches are distributed among these distances:
13 5 0.04
14 5 0.04
15 10 0.08
16 35 0.27
17 53 0.41
18 7 0.05
19 8 0.06
20 6 0.05
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (17 bp):
ATATATATATATACTTT
Found at i:8682856 original size:11 final size:11
Alignment explanation
Indices: 8682842--8682966 Score: 66
Period size: 11 Copynumber: 11.4 Consensus size: 11
8682832 TCTTTATAAG
8682842 TATATTATATA
1 TATATTATATA
8682853 TATA-TATATAA
1 TATATTATAT-A
*
8682864 TATACTTATCATT
1 TATA-TTAT-ATA
8682877 TATATTATATA
1 TATATTATATA
* *
8682888 TATATAATTTA
1 TATATTATATA
*
8682899 TA-ATTATACA
1 TATATTATATA
8682909 TA-ATT-TATA
1 TATATTATATA
* * *
8682918 AATATAAACTGTA
1 TATAT-TA-TATA
*
8682931 TATATT-TAAA
1 TATATTATATA
8682941 TATAATTCATATA
1 TAT-ATT-ATATA
8682954 TA-ATT-TATA
1 TATATTATATA
8682963 TATA
1 TATA
8682967 AACTATAAGT
Statistics
Matches: 86, Mismatches: 16, Indels: 25
0.68 0.13 0.20
Matches are distributed among these distances:
9 10 0.12
10 23 0.27
11 28 0.33
12 4 0.05
13 19 0.22
14 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (11 bp):
TATATTATATA
Found at i:8682934 original size:45 final size:43
Alignment explanation
Indices: 8682884--8682970 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 43
8682874 ATTTATATTA
*
8682884 TATATATATAATTTATAATT-ATACATAATTTATAAATATAAACTG
1 TATATATATAA-ATATAATTCATACATAATTTAT--ATATAAACTG
* *
8682929 TATATATTTAAATATAATTCATATATAATTTATATATAAACT
1 TATATATATAAATATAATTCATACATAATTTATATATAAACT
8682971 ATAAGTTGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 9 0.24
44 7 0.18
45 22 0.58
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (43 bp):
TATATATATAAATATAATTCATACATAATTTATATATAAACTG
Found at i:8683056 original size:18 final size:18
Alignment explanation
Indices: 8683033--8683070 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8683023 TTTTAAGATT
8683033 TTATATTCGATTTAAATA
1 TTATATTCGATTTAAATA
* *
8683051 TTATATTTGATTTAATTA
1 TTATATTCGATTTAAATA
8683069 TT
1 TT
8683071 CAAATATTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (18 bp):
TTATATTCGATTTAAATA
Found at i:8687724 original size:45 final size:45
Alignment explanation
Indices: 8687673--8687886 Score: 358
Period size: 45 Copynumber: 4.8 Consensus size: 45
8687663 TATAAAATTT
* *
8687673 CTTATCATTTATTCTATAAGCTCATAAGCTTATTTTACCAATATA
1 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
8687718 CTTATCATTTATTCCATAAGATCGCAAGCTTATTTTACCAATATA
1 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
8687763 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
8687808 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
** *
8687853 CTTGCCA-TTATTCCATAAGCTTGTAAGCTTATTT
1 CTTATCATTTATTCCATAAGCTCGTAAGCTTATTT
8687887 GCATGCTTAC
Statistics
Matches: 160, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
44 26 0.16
45 134 0.84
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.43
Consensus pattern (45 bp):
CTTATCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:8687774 original size:24 final size:24
Alignment explanation
Indices: 8687747--8687820 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
8687737 GATCGCAAGC
8687747 TTATTTTACCAATATACTTATCAT
1 TTATTTTACCAATATACTTATCAT
** * *
8687771 TTA--TT-CC-ATA-AGCTCGTAAGC
1 TTATTTTACCAATATA-CTTATCA-T
8687792 TTATTTTACCAATATACTTATCAT
1 TTATTTTACCAATATACTTATCAT
8687816 TTATT
1 TTATT
8687821 CCATAAGCTC
Statistics
Matches: 35, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
19 1 0.03
20 7 0.20
21 5 0.14
22 2 0.06
23 2 0.06
24 10 0.29
25 7 0.20
26 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (24 bp):
TTATTTTACCAATATACTTATCAT
Found at i:8688046 original size:40 final size:40
Alignment explanation
Indices: 8687991--8688152 Score: 270
Period size: 40 Copynumber: 4.0 Consensus size: 40
8687981 ACCGTAGTGC
*
8687991 TACACATAAGGTCGTGCCCACCATATACATCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* *
8688031 TACACGTAAGGTCGTGCCCACCATTTACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
* *
8688071 TACACATAAGTTCGTGCCCACCATGTACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
*
8688111 TACACATAAGGTCGTGCCCACCATATACACCAAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
8688151 TA
1 TA
8688153 TAAACCTACA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (40 bp):
TACACATAAGGTCGTGCCCACCATATACACCGAAGTGTAT
Found at i:8691824 original size:13 final size:13
Alignment explanation
Indices: 8691806--8691840 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8691796 TTTTAACTTG
8691806 GTTTTCAAAAATA
1 GTTTTCAAAAATA
8691819 GTTTTCAAAAATA
1 GTTTTCAAAAATA
8691832 GTTTTCAAA
1 GTTTTCAAA
8691841 TTTGCCCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (13 bp):
GTTTTCAAAAATA
Found at i:8693265 original size:17 final size:17
Alignment explanation
Indices: 8693216--8693270 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
8693206 ATTTTGATGG
*
8693216 ATTTATGTGTTTTGGAT
1 ATTTGTGTGTTTTGGAT
* * *
8693233 ATTAGTTTG-ATTGGAT
1 ATTTGTGTGTTTTGGAT
8693249 ATTTGTGTGTTTTGGAT
1 ATTTGTGTGTTTTGGAT
*
8693266 GTTTG
1 ATTTG
8693271 ATTTTGAATG
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 13 0.45
17 16 0.55
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.56
Consensus pattern (17 bp):
ATTTGTGTGTTTTGGAT
Found at i:8693449 original size:2 final size:2
Alignment explanation
Indices: 8693442--8693478 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8693432 TCTTAGTAGC
8693442 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8693479 CAATTGGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8694902 original size:20 final size:20
Alignment explanation
Indices: 8694852--8694902 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8694842 ATATAAACTC
8694852 TATAATTTATACAAGATATA
1 TATAATTTATACAAGATATA
* *
8694872 TACAGTTTATACATA-ATATA
1 TATAATTTATACA-AGATATA
*
8694892 TATAATATATA
1 TATAATTTATA
8694903 GTAATCTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (20 bp):
TATAATTTATACAAGATATA
Found at i:8694981 original size:23 final size:24
Alignment explanation
Indices: 8694912--8695002 Score: 66
Period size: 23 Copynumber: 4.0 Consensus size: 24
8694902 AGTAATCTAA
* * *
8694912 ATATAAACTATATAGTTTATATAT
1 ATATACACTTTATACTTTATATAT
* *
8694936 A-AT-TA-TTTATA-TATATATAT
1 ATATACACTTTATACTTTATATAT
*
8694956 ATATACAC-TTATACTTTATATGT
1 ATATACACTTTATACTTTATATAT
* *
8694979 ATATATACTTTATACACTTATATA
1 ATATACACTTTATAC-TTTATATA
8695003 CTTTATATTA
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
20 9 0.17
21 7 0.13
22 7 0.13
23 16 0.31
24 7 0.13
25 6 0.12
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATACACTTTATACTTTATATAT
Found at i:8694985 original size:17 final size:16
Alignment explanation
Indices: 8694965--8695395 Score: 96
Period size: 17 Copynumber: 27.2 Consensus size: 16
8694955 TATATACACT
8694965 TATACTTTATATGTATA
1 TATACTTTATAT-TATA
*
8694982 TATACTTTATA-CACTTA
1 TATACTTTATATTA--TA
8694999 TATACTTTATA-T-TA
1 TATACTTTATATTATA
8695013 TATACTTATATACTT-TA
1 TATACTT-TATA-TTATA
*
8695030 -GT-CTTTATA--AT-
1 TATACTTTATATTATA
8695041 TATACTTTATATT-TA
1 TATACTTTATATTATA
8695056 -ATACTTATATATT-T-
1 TATACTT-TATATTATA
*
8695070 TATA-TTATATACT-TA
1 TATACTT-TATATTATA
8695085 TATACTTTATA-T-TA
1 TATACTTTATATTATA
*
8695099 TATGCTTATATACTT-TA
1 TATACTT-TATA-TTATA
* *
8695116 -GT-CTTTATAAT-TA
1 TATACTTTATATTATA
8695129 -ATACTTTATATATATAA
1 TATACTTTATAT-TAT-A
*
8695146 TATATATTTATACTT-TA
1 TATA-CTTTATA-TTATA
8695163 TATTA-TTATATATGTATA
1 TA-TACTT-TATAT-TATA
* * *
8695181 TCTATTTTATACTA-A
1 TATACTTTATATTATA
*
8695196 -A-ACTTTATACATATATTT
1 TATACTTTAT--AT-TA-TA
*
8695214 TATAGTTTATATATATA
1 TATACTTTATAT-TATA
*
8695231 CTTTTACTTTATAGTTTATA
1 --TATACTTTATA--TTATA
* * *
8695251 TGTA-TATATATTTTA
1 TATACTTTATATTATA
8695266 TATACTTTATA-TA-A
1 TATACTTTATATTATA
*
8695280 TATACTTATATACT-TA
1 TATACTT-TATATTATA
*
8695296 TATACTTTAGTTTTTATAA
1 TATACTTTA--TATTAT-A
8695315 TTATACTTTATA-TATA
1 -TATACTTTATATTATA
8695331 TATA---TATA-TA-A
1 TATACTTTATATTATA
8695342 TATAC-TTATACTTGATA
1 TATACTTTATA-TT-ATA
8695359 T-TA-TTATATATGTATA
1 TATACTT-TATAT-TATA
*
8695375 TGTACTTTATATATATA
1 TATACTTTATAT-TATA
8695392 TATA
1 TATA
8695396 TATAATTTAT
Statistics
Matches: 321, Mismatches: 32, Indels: 122
0.68 0.07 0.26
Matches are distributed among these distances:
11 5 0.02
12 8 0.02
13 21 0.07
14 57 0.18
15 55 0.17
16 36 0.11
17 77 0.24
18 23 0.07
19 18 0.06
20 20 0.06
21 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (16 bp):
TATACTTTATATTATA
Found at i:8694997 original size:9 final size:9
Alignment explanation
Indices: 8694965--8695096 Score: 60
Period size: 8 Copynumber: 17.3 Consensus size: 9
8694955 TATATACACT
8694965 TATACTTTA
1 TATACTTTA
* *
8694974 TAT-GTATA
1 TATACTTTA
8694982 TATACTTTA
1 TATACTTTA
*
8694991 TACAC-TTA
1 TATACTTTA
8694999 TATAC-TT-
1 TATACTTTA
8695006 TATA--TTA
1 TATACTTTA
8695013 TATAC-TTA
1 TATACTTTA
8695021 TATACTTTA
1 TATACTTTA
*
8695030 -GT-CTTTA
1 TATACTTTA
8695037 TA-A---T-
1 TATACTTTA
8695041 TATAC-TT-
1 TATACTTTA
8695048 TATA-TTTA
1 TATACTTTA
8695056 -ATAC-TTA
1 TATACTTTA
8695063 TATA-TTT-
1 TATACTTTA
8695070 TATA--TTA
1 TATACTTTA
8695077 TATAC-TTA
1 TATACTTTA
8695085 TATACTTTA
1 TATACTTTA
8695094 TAT
1 TAT
8695097 TATATGCTTA
Statistics
Matches: 98, Mismatches: 8, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
4 2 0.02
5 2 0.02
6 4 0.04
7 34 0.35
8 37 0.38
9 19 0.19
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.55
Consensus pattern (9 bp):
TATACTTTA
Found at i:8694999 original size:8 final size:8
Alignment explanation
Indices: 8694980--8695302 Score: 125
Period size: 7 Copynumber: 44.1 Consensus size: 8
8694970 TTTATATGTA
8694980 TATATACTT
1 TATATAC-T
*
8694989 TATACACT
1 TATATACT
8694997 TATATACT
1 TATATACT
8695005 T-TATA-T
1 TATATACT
8695011 TATATACT
1 TATATACT
8695019 TATATACT
1 TATATACT
8695027 T-TAGT-CT
1 TATA-TACT
*
8695034 T-TATA-A
1 TATATACT
8695040 T-TATACT
1 TATATACT
*
8695047 T-TATATT
1 TATATACT
8695054 TA-ATACT
1 TATATACT
8695061 TATATA-T
1 TATATACT
*
8695068 TTTATA-T
1 TATATACT
8695075 TATATACT
1 TATATACT
8695083 TATATACT
1 TATATACT
8695091 T-TATA-T
1 TATATACT
*
8695097 TATATGCT
1 TATATACT
8695105 TATATACT
1 TATATACT
8695113 T-TAGT-CT
1 TATA-TACT
*
8695120 T-TATAAT
1 TATATACT
8695127 TA-ATACT
1 TATATACT
8695134 T-TATA--
1 TATATACT
*
8695139 TATATA-A
1 TATATACT
8695146 TATATA-T
1 TATATACT
8695153 T-TATACTT
1 TATATAC-T
8695161 TATATTA-T
1 TATA-TACT
8695169 TATATA-T
1 TATATACT
8695176 GTATAT-CTAT
1 -TATATAC--T
*
8695186 TTTATAC-
1 TATATACT
*
8695193 TA-AAACT
1 TATATACT
8695200 T-TATAC-
1 TATATACT
8695206 -ATATA-T
1 TATATACT
* *
8695212 TTTATAGT
1 TATATACT
8695220 T-TATA--
1 TATATACT
8695225 TATATACT
1 TATATACT
8695233 T-T-TACT
1 TATATACT
*
8695239 T-TATAGT
1 TATATACT
*
8695246 T-TATATGT
1 TATATA-CT
*
8695254 ATATATATTT
1 -TATATA-CT
8695264 TATATACT
1 TATATACT
8695272 T-TATA-T
1 TATATACT
*
8695278 AATATACT
1 TATATACT
8695286 TATATACT
1 TATATACT
8695294 TATATACT
1 TATATACT
8695302 T
1 T
8695303 TAGTTTTTAT
Statistics
Matches: 251, Mismatches: 23, Indels: 81
0.71 0.06 0.23
Matches are distributed among these distances:
5 2 0.01
6 37 0.15
7 104 0.41
8 79 0.31
9 19 0.08
10 10 0.04
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (8 bp):
TATATACT
Found at i:8694999 original size:25 final size:25
Alignment explanation
Indices: 8694947--8695002 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
8694937 ATTATTTATA
*
8694947 TATATATATATATACACTTATACTT
1 TATATATATATATACACTTATACCT
* *
8694972 TATATGTATATATAC-TTTATACACT
1 TATATATATATATACACTTATAC-CT
8694997 TATATA
1 TATATA
8695003 CTTTATATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (25 bp):
TATATATATATATACACTTATACCT
Found at i:8695019 original size:22 final size:22
Alignment explanation
Indices: 8694988--8695436 Score: 207
Period size: 22 Copynumber: 21.1 Consensus size: 22
8694978 TATATATACT
*
8694988 TTATACACTTATATACTTTATA
1 TTATATACTTATATACTTTATA
*
8695010 TTATATACTTATATACTTTAGTC
1 TTATATACTTATATACTTTA-TA
*
8695033 TT-TATA-AT-TATACTTTATA
1 TTATATACTTATATACTTTATA
*
8695052 TT-TAATACTTATATATTTTATA
1 TTAT-ATACTTATATACTTTATA
8695074 TTATATACTTATATACTTTATA
1 TTATATACTTATATACTTTATA
* *
8695096 TTATATGCTTATATACTTTAGTC
1 TTATATACTTATATACTTTA-TA
*
8695119 TT-TATAATTA-ATACTTTATA
1 TTATATACTTATATACTTTATA
*
8695139 -TATATA-ATATATA-TTTATA
1 TTATATACTTATATACTTTATA
8695158 CTTTATATTA-TTATATA-TGTATATCTA
1 --TTATA-TACTTATATACT-T-TA--TA
* *
8695185 TTTTATAC-TA-AAACTTTATA
1 TTATATACTTATATACTTTATA
* * *
8695205 -CATATA-TTTTATAGTTTATA
1 TTATATACTTATATACTTTATA
8695225 -TATATACTT-T-TACTTTATA
1 TTATATACTTATATACTTTATA
*
8695244 GTT-TATA-TGTATATA---TATT
1 -TTATATACT-TATATACTTTATA
*
8695263 TTATATACTT-TATA-TAATATA
1 TTATATACTTATATACT-TTATA
8695284 CTTATATACTTATATACTTTAGT-
1 -TTATATACTTATATACTTTA-TA
* *
8695307 TTTTATA-AT-TATACTTTATA
1 TTATATACTTATATACTTTATA
*
8695327 -TATATA--TATATA-TAATATA
1 TTATATACTTATATACT-TTATA
* * *
8695346 CT-TATACTTGATATTATTATATA
1 TTATATACTT-ATA-TACTTTATA
*
8695369 TGTATATGTACTT-TATA-TATATA
1 T-TATA--TACTTATATACTTTATA
* *
8695392 TATATATAATT-TATAGTTTATA
1 T-TATATACTTATATACTTTATA
* *
8695414 -TATATACTTAAATATTTTATA
1 TTATATACTTATATACTTTATA
8695435 TT
1 TT
8695437 TAAACTATAT
Statistics
Matches: 339, Mismatches: 37, Indels: 102
0.71 0.08 0.21
Matches are distributed among these distances:
18 8 0.02
19 53 0.16
20 60 0.18
21 36 0.11
22 110 0.32
23 43 0.13
24 12 0.04
25 10 0.03
27 7 0.02
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (22 bp):
TTATATACTTATATACTTTATA
Found at i:8695060 original size:42 final size:42
Alignment explanation
Indices: 8694999--8695168 Score: 192
Period size: 42 Copynumber: 4.1 Consensus size: 42
8694989 TATACACTTA
8694999 TATACTTTATATTATATACTTATATACTTTAGTCTTTATAAT
1 TATACTTTATATTATATACTTATATACTTTAGTCTTTATAAT
* * *
8695041 TATACTTTATATT-TAATACTTATATATTTTA-TATTATATACTT
1 TATACTTTATATTAT-ATACTTATATACTTTAGTCTT-TATA-AT
*
8695084 ATATACTTTATATTATATGCTTATATACTTTAGTCTTTATAAT
1 -TATACTTTATATTATATACTTATATACTTTAGTCTTTATAAT
*
8695127 TAATACTTTATA-TATATA-ATATATA-TTTA-TACTTTAT-AT
1 T-ATACTTTATATTATATACTTATATACTTTAGT-CTTTATAAT
8695166 TAT
1 TAT
8695169 TATATATGTA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
38 2 0.02
39 4 0.04
40 10 0.09
41 10 0.09
42 38 0.34
43 12 0.11
44 31 0.28
45 4 0.04
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (42 bp):
TATACTTTATATTATATACTTATATACTTTAGTCTTTATAAT
Found at i:8695108 original size:64 final size:66
Alignment explanation
Indices: 8695050--8695368 Score: 142
Period size: 64 Copynumber: 4.9 Consensus size: 66
8695040 TTATACTTTA
**
8695050 TATTTAATACTTATATATTTTATATTATATACTTATATACTTTATATTATATGCTTATATACTTT
1 TATTT-ATACTTATATATTTTATATTATATACTTATATACTTTATATTATATAATTATATACTTT
8695115 AG
65 AG
* * * * *
8695117 TCTTTATAATTA-ATACTTTATA-TATATA-ATATATA-TTTATACTTTATATTATTATATA-TG
1 TATTTATACTTATATATTTTATATTATATACTTATATACTTTATA--TTATATAATTATATACT-
*
8695177 TATATC
63 T-TA-G
* * * * * *
8695183 TATTTTATAC-TA-AAACTTTATA-CATATA-TTTTATAGTTTATA-TATATACTT-T-TACTTT
1 TA-TTTATACTTATATATTTTATATTATATACTTATATACTTTATATTATATAATTATATACTTT
8695241 A-
65 AG
* * *
8695242 TAGTTTATA-TGTATATA---TATTTTATATACTT-TATA-TAATATACTTATATACTTATATAC
1 TA-TTTATACT-TATATATTTTATATTATATACTTATATACT-TTATA-TTATATAATTATATAC
8695301 TTTAG
62 TTTAG
* * * *
8695306 TTTTTATAATTATACT-TTATATATATATATATA-TAATATAC-TTATACTTGATATTATTATAT
1 TATTTATACTTATA-TATT-T-TATAT-TATATACTTATATACTTTATA-TT-ATATAATTATAT
8695368 A
60 A
8695369 TGTATATGTA
Statistics
Matches: 196, Mismatches: 26, Indels: 58
0.70 0.09 0.21
Matches are distributed among these distances:
58 4 0.02
59 21 0.11
60 4 0.02
61 13 0.07
62 10 0.05
63 26 0.13
64 30 0.15
65 11 0.06
66 28 0.14
67 16 0.08
68 12 0.06
69 21 0.11
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (66 bp):
TATTTATACTTATATATTTTATATTATATACTTATATACTTTATATTATATAATTATATACTTTA
G
Found at i:8695164 original size:86 final size:87
Alignment explanation
Indices: 8694973--8695174 Score: 288
Period size: 86 Copynumber: 2.3 Consensus size: 87
8694963 CTTATACTTT
* * *
8694973 ATATGTATATATACTTTATACACTTATATACTTTATATTATATACTTATATACTTTAGTCTTTAT
1 ATATATATTTATACTTTATATACTTATATACTTTATATTATATACTTATATACTTTAGTCTTTAT
*
8695038 AATTATACTTTATATTTAATAC
66 AATTATACTTTATATATAATAC
* *
8695060 TTATATATTT-TA-TATTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTTA
1 ATATATATTTATACT-TTATATACTTATATACTTTATATTATATACTTATATACTTTAGTCTTTA
8695123 TAATTAATACTTTATATAT-ATA-
65 TAATT-ATACTTTATATATAATAC
8695145 ATATATATTTATACTTTATATTA-TTATATA
1 ATATATATTTATACTTTATA-TACTTATATA
8695175 TGTATATCTA
Statistics
Matches: 103, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
85 10 0.10
86 71 0.69
87 22 0.21
ACGTcount: A:0.36, C:0.08, G:0.02, T:0.54
Consensus pattern (87 bp):
ATATATATTTATACTTTATATACTTATATACTTTATATTATATACTTATATACTTTAGTCTTTAT
AATTATACTTTATATATAATAC
Found at i:8695278 original size:11 final size:10
Alignment explanation
Indices: 8695247--8695418 Score: 52
Period size: 10 Copynumber: 16.5 Consensus size: 10
8695237 CTTTATAGTT
*
8695247 TATATGTATA
1 TATATTTATA
8695257 TATATTT-TA
1 TATATTTATA
8695266 TATACTTTATA
1 TATA-TTTATA
8695277 TAATATACTTATA
1 T-ATAT--TTATA
*
8695290 TACT-TATATA
1 TA-TATTTATA
*
8695300 CTTTAGTTT-T-
1 -TATA-TTTATA
*
8695310 TATAATTATA
1 TATATTTATA
* *
8695320 CTTTATATATA
1 -TATATTTATA
*
8695331 TATATATATAA
1 TATATTTAT-A
*
8695342 TATACTTATA
1 TATATTTATA
8695352 CT-TGATATTATTA
1 -TAT-AT-TTA-TA
*
8695365 TATATGTATA
1 TATATTTATA
*
8695375 TGTACTTTATA
1 TATA-TTTATA
*
8695386 TATATATATA
1 TATATTTATA
*
8695396 TATAATT-TA
1 TATATTTATA
*
8695405 TA-GTTTATA
1 TATATTTATA
8695414 TATAT
1 TATAT
8695419 ACTTAAATAT
Statistics
Matches: 118, Mismatches: 23, Indels: 42
0.64 0.13 0.23
Matches are distributed among these distances:
8 4 0.03
9 18 0.15
10 40 0.34
11 33 0.28
12 13 0.11
13 10 0.08
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.53
Consensus pattern (10 bp):
TATATTTATA
Found at i:8695291 original size:13 final size:14
Alignment explanation
Indices: 8695265--8695348 Score: 64
Period size: 20 Copynumber: 5.6 Consensus size: 14
8695255 TATATATTTT
8695265 ATATACTTTATATA
1 ATATACTTTATATA
*
8695279 ATATACTTATATACTT
1 ATATACTT-TATA-TA
8695295 ATATACTTTAGTTTTTATA
1 ATATACTTTA-----TATA
8695314 ATTATACTTTATAT-
1 A-TATACTTTATATA
*
8695328 ATATA-TATATATA
1 ATATACTTTATATA
8695341 ATATACTT
1 ATATACTT
8695349 ATACTTGATA
Statistics
Matches: 56, Mismatches: 4, Indels: 20
0.70 0.05 0.25
Matches are distributed among these distances:
12 6 0.11
13 9 0.16
14 10 0.18
15 9 0.16
16 9 0.16
19 2 0.04
20 11 0.20
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.52
Consensus pattern (14 bp):
ATATACTTTATATA
Found at i:8695298 original size:189 final size:187
Alignment explanation
Indices: 8695074--8695422 Score: 485
Period size: 189 Copynumber: 1.8 Consensus size: 187
8695064 ATATTTTATA
* *
8695074 TTATATACTTATATACTTTATATTATATGCTTATATACTTTAGTCTTTATAATTAATAC-TT-TA
1 TTATATACTTATATAC-ATATATTATATACTTATATACTTTAGTCTTTATAATT-ATACTTTATA
* *
8695137 TATATATA-ATAT-ATAT-TTATACTTTATATTATTATATATGTATATCTATTTTATACTAAAAC
64 TATATATATATATAATATATTATACTTGATATTATTATATATGTATATCTACTTTATA-T---A-
* *
8695199 TTTATACATATATTTTATAGTTTATATATATACTTTTACTTTATAGTTTATATGTATATATATT
124 TATATACATATAATTTATAGTTTATATATATACTTTTACTTTATAGTTTATATGTATATATATT
*
8695263 TTATATACTTTATATA-ATATACTTATATACTTATATACTTTAGTTTTTATAATTATACTTTATA
1 TTATATAC-TTATATACATATA-TTATATACTTATATACTTTAGTCTTTATAATTATACTTTATA
*
8695327 TATATATATATATAATATACTTATACTTGATATTATTATATATGTATATGTACTTTATATATATA
64 TATATATATATATAATATA-TTATACTTGATATTATTATATATGTATATCTACTTTATATATATA
*
8695392 TATATATAATTTATAGTTTATATATATACTT
128 TACATATAATTTATAGTTTATATATATACTT
8695423 AAATATTTTA
Statistics
Matches: 143, Mismatches: 9, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
188 8 0.06
189 72 0.50
190 18 0.13
191 4 0.03
192 4 0.03
193 1 0.01
194 36 0.25
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (187 bp):
TTATATACTTATATACATATATTATATACTTATATACTTTAGTCTTTATAATTATACTTTATATA
TATATATATATAATATATTATACTTGATATTATTATATATGTATATCTACTTTATATATATATAC
ATATAATTTATAGTTTATATATATACTTTTACTTTATAGTTTATATGTATATATATT
Found at i:8695330 original size:2 final size:2
Alignment explanation
Indices: 8695323--8695419 Score: 62
Period size: 2 Copynumber: 49.0 Consensus size: 2
8695313 AATTATACTT
8695323 TA TA TA TA TA TA TA TA TA -A TA TA CT- TA TA CT- TGA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA T-A TA TA TA
* * * *
8695362 T- TA TA TA TG TA TA TG TA CTT TA TA TA TA TA TA TA TA TA -A TT
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
*
8695403 TA TA GTT TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA
8695420 CTTAAATATT
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
1 6 0.08
2 63 0.85
3 5 0.07
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8695351 original size:13 final size:14
Alignment explanation
Indices: 8694931--8695348 Score: 72
Period size: 13 Copynumber: 29.0 Consensus size: 14
8694921 ATATAGTTTA
8694931 TATATAAT-TA-TT
1 TATATAATATACTT
*
8694943 TATAT-ATATA-TA
1 TATATAATATACTT
8694955 TATATACACTTATACTT
1 TATATA-A--TATACTT
8694972 TATATGTATATATACTT
1 TATA--TA-ATATACTT
*
8694989 TATACACTTATATACTT
1 TAT--A-TAATATACTT
*
8695006 TATATTATATAC-T
1 TATATAATATACTT
* *
8695019 TATATACTTTAGTCTT
1 TATATAATATA--CTT
*
8695035 TATA-ATTATACTT
1 TATATAATATACTT
*
8695048 TATAT-TTAATACTT
1 TATATAAT-ATACTT
**
8695062 ATATATTTTATA-TT
1 -TATATAATATACTT
*
8695076 ATATACTTATATACTT
1 -TATA-TAATATACTT
* *
8695092 TATATTATATGC-T
1 TATATAATATACTT
* *
8695105 TATATACTTTAGTCTT
1 TATATAATATA--CTT
*
8695121 TATA-ATTAATACTT
1 TATATAAT-ATACTT
* *
8695135 TATAT-ATATAATA
1 TATATAATATACTT
*
8695148 TATAT-TTATACTT
1 TATATAATATACTT
* *
8695161 TATATTAT-TA-TA
1 TATATAATATACTT
* * *
8695173 TATGTATATCTATTT
1 TATATA-ATATACTT
8695188 TATACTAA-A-ACTT
1 TATA-TAATATACTT
*
8695201 TATACATATATTTTATAGTT
1 TAT--ATA-A---TATACTT
8695221 TATAT-ATATACTT
1 TATATAATATACTT
* *
8695234 T-TACT-TTATAGTT
1 TATA-TAATATACTT
* *
8695247 TATAT-GTATA-TA
1 TATATAATATACTT
* *
8695259 TATTTTATATACTT
1 TATATAATATACTT
8695273 TATATAATATACTT
1 TATATAATATACTT
*
8695287 ATATACTTATATACTT
1 -TATA-TAATATACTT
8695303 TAGTTTTTATAATTATACTT
1 TA-----TATAA-TATACTT
*
8695323 TATAT-ATATA-TA
1 TATATAATATACTT
8695335 TATATAATATACTT
1 TATATAATATACTT
8695349 ATACTTGATA
Statistics
Matches: 308, Mismatches: 47, Indels: 100
0.68 0.10 0.22
Matches are distributed among these distances:
11 2 0.01
12 31 0.10
13 88 0.29
14 59 0.19
15 43 0.14
16 32 0.10
17 26 0.08
18 3 0.01
19 7 0.02
20 17 0.06
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (14 bp):
TATATAATATACTT
Found at i:8697205 original size:59 final size:59
Alignment explanation
Indices: 8697103--8697442 Score: 468
Period size: 59 Copynumber: 5.8 Consensus size: 59
8697093 CAGGGAATTT
* * * * **
8697103 ATACAATTAGTGTGATTCCCTTATCATTTTAGCACACTTAGTGCCCTATCTGGAAATCC
1 ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCC
* * *
8697162 ATACGCTTAGTACGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATAC-AGAAATCC
1 ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTAT-CTGGAAATCC
* *
8697221 ATACAATTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCA
1 ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCC
* * * *
8697280 ATACACTTAGTAGGATTTCCTTACCATTTTTGCAAACAAAGTGCCCTATCTGGAAATTC
1 ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCC
* *
8697339 ATAC-CATTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGAAAATTC
1 ATACAC-TTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCC
* * *
8697398 ACACAATTAATATGATTTCCTTACCATTTTAGCACACAAAGTGCC
1 ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCC
8697443 ATTGGGTAAT
Statistics
Matches: 250, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
58 2 0.01
59 247 0.99
60 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.33
Consensus pattern (59 bp):
ATACACTTAGTATGATTTCCTTACCATTTTAGCACACAAAGTGCCCTATCTGGAAATCC
Found at i:8697791 original size:20 final size:21
Alignment explanation
Indices: 8697765--8697816 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
8697755 TGGCCCTTCA
8697765 GTATCGATACT-CCTACTATG
1 GTATCGATACTACCTACTATG
* *
8697785 TTATCGATATTACCCTACTATG
1 GTATCGATACTA-CCTACTATG
8697807 GTATCGATAC
1 GTATCGATAC
8697817 CATCTTCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 9 0.35
22 17 0.65
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (21 bp):
GTATCGATACTACCTACTATG
Found at i:8698799 original size:11 final size:11
Alignment explanation
Indices: 8698785--8699005 Score: 93
Period size: 11 Copynumber: 20.5 Consensus size: 11
8698775 AAGTATAAAC
8698785 TATATAGTTTA
1 TATATAGTTTA
8698796 TATACATAGTTTA
1 TAT--ATAGTTTA
***
8698809 TATATACAATA
1 TATATAGTTTA
**
8698820 TATATACCTTA
1 TATATAGTTTA
* *
8698831 TTTATA--TGA
1 TATATAGTTTA
8698840 TATATAGTTTA
1 TATATAGTTTA
8698851 TATATAGTTTA
1 TATATAGTTTA
****
8698862 TAT-TAAAAAA
1 TATATAGTTTA
8698872 TTATATAGTTTA
1 -TATATAGTTTA
* *
8698884 TACATA--ATA
1 TATATAGTTTA
8698893 TATATAGTTTA
1 TATATAGTTTA
*
8698904 TATATAGTATA
1 TATATAGTTTA
* *
8698915 TA-ATAATATA
1 TATATAGTTTA
* ***
8698925 AATATAAACTA
1 TATATAGTTTA
*
8698936 TATA-A-TATA
1 TATATAGTTTA
* *
8698945 TATATACATATA
1 TATATA-GTTTA
*
8698957 TATATA-TATA
1 TATATAGTTTA
8698967 TATATAGTTTA
1 TATATAGTTTA
*
8698978 TATATA-TAATA
1 TATATAGT-TTA
*
8698989 TATATACTTTA
1 TATATAGTTTA
8699000 TATATA
1 TATATA
8699006 AACTATATAT
Statistics
Matches: 163, Mismatches: 32, Indels: 30
0.72 0.14 0.13
Matches are distributed among these distances:
9 20 0.12
10 24 0.15
11 94 0.58
12 14 0.09
13 11 0.07
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (11 bp):
TATATAGTTTA
Found at i:8698804 original size:13 final size:13
Alignment explanation
Indices: 8698788--8698812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8698778 TATAAACTAT
8698788 ATAGTTTATATAC
1 ATAGTTTATATAC
8698801 ATAGTTTATATA
1 ATAGTTTATATA
8698813 TACAATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (13 bp):
ATAGTTTATATAC
Found at i:8698863 original size:20 final size:20
Alignment explanation
Indices: 8698795--8699044 Score: 149
Period size: 20 Copynumber: 13.0 Consensus size: 20
8698785 TATATAGTTT
*
8698795 ATATACATAGTTTATATATACA
1 ATATATATAGTTTATATAT--A
** *
8698817 ATATATATACCTTATTTAT-
1 ATATATATAGTTTATATATA
8698836 ATGATATATAGTTTATATATA
1 AT-ATATATAGTTTATATATA
* *
8698857 GT-T-TATA--TTA-A-AAA
1 ATATATATAGTTTATATATA
*
8698871 AT-TATATAGTTTATACATA
1 ATATATATAGTTTATATATA
8698890 ATATATATAGTTTATATATA
1 ATATATATAGTTTATATATA
*
8698910 GTATATA-A---TA-ATATA
1 ATATATATAGTTTATATATA
* * *
8698925 A-ATATAAACTATATA-AT-
1 ATATATATAGTTTATATATA
* *
8698942 ATATATATACATATATATATA
1 ATATATATA-GTTTATATATA
8698963 TATATATATAGTTTATATATATA
1 -ATATATATAG-TT-TATATATA
*
8698986 ATATATATACTTTATATATA
1 ATATATATAGTTTATATATA
* *
8699006 A-ACTATATATTTTATACATA
1 ATA-TATATAGTTTATATATA
*
8699026 ATATATATA-TATATATATA
1 ATATATATAGTTTATATATA
8699045 TATTATAATT
Statistics
Matches: 183, Mismatches: 23, Indels: 47
0.72 0.09 0.19
Matches are distributed among these distances:
14 9 0.05
15 11 0.06
16 5 0.03
17 4 0.02
18 15 0.08
19 24 0.13
20 69 0.38
21 4 0.02
22 34 0.19
23 8 0.04
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (20 bp):
ATATATATAGTTTATATATA
Found at i:8698863 original size:53 final size:53
Alignment explanation
Indices: 8698785--8698916 Score: 151
Period size: 53 Copynumber: 2.5 Consensus size: 53
8698775 AAGTATAAAC
* * **
8698785 TATATAGTTTATATACATAGTTTATA-TATACAATATATATACCTTATTTAT-ATGA
1 TATATAGTTTATAT--ATAGTTTATATTAAAAAAT-TATATACCTTATACATAAT-A
**
8698840 TATATAGTTTATATATAGTTTATATTAAAAAATTATATAGTTTATACATAATA
1 TATATAGTTTATATATAGTTTATATTAAAAAATTATATACCTTATACATAATA
*
8698893 TATATAGTTTATATATAGTATATA
1 TATATAGTTTATATATAGTTTATA
8698917 ATAATATAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
53 46 0.68
54 8 0.12
55 14 0.21
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (53 bp):
TATATAGTTTATATATAGTTTATATTAAAAAATTATATACCTTATACATAATA
Found at i:8698895 original size:2 final size:2
Alignment explanation
Indices: 8698890--8699051 Score: 140
Period size: 2 Copynumber: 81.5 Consensus size: 2
8698880 TTTATACATA
* * *
8698890 AT AT AT AT AGT TT AT AT AT AGT AT AT A- AT A- AT AT AA AT AT AA
1 AT AT AT AT A-T AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
*
8698932 ACT AT AT A- AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AGT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
* * *
8698975 TT AT AT AT AT A- AT AT AT AT ACT TT AT AT AT AA ACT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT
* *
8699017 TT AT AC AT A- AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8699052 ATTGTTTCAA
Statistics
Matches: 130, Mismatches: 17, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
1 7 0.05
2 116 0.89
3 7 0.05
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8698993 original size:116 final size:120
Alignment explanation
Indices: 8698834--8699047 Score: 287
Period size: 116 Copynumber: 1.8 Consensus size: 120
8698824 TACCTTATTT
* *
8698834 ATATGATATATAGTTTATATATAGTTTATATTAAAAAATTATATAGTTTATACATAATA-TATAT
1 ATATGATATATAGTATATATATAGTTTATATTAAAAAATTATATACTTTATACATAA-ACTATAT
* *
8698898 AGTTTATATATAGTATATA-ATA-ATATAAATATAAACTATATAATATATATATAC
65 AGTTTATACATAATATATATATATATATAAATATAAACTATATAATATATATATAC
* * *
8698952 ATAT-ATATATA-TATATATATAGTTTATA-TATATAATATATATACTTTATATATAAACTATAT
1 ATATGATATATAGTATATATATAGTTTATATTAAAAAAT-TATATACTTTATACATAAACTATAT
* *
8699014 ATTTTATACATAATATATATATATATATATATAT
65 AGTTTATACATAATATATATATATATATAAATAT
8699048 TATAATTGTT
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
115 7 0.08
116 53 0.64
117 10 0.12
118 13 0.16
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (120 bp):
ATATGATATATAGTATATATATAGTTTATATTAAAAAATTATATACTTTATACATAAACTATATA
GTTTATACATAATATATATATATATATAAATATAAACTATATAATATATATATAC
Found at i:8713705 original size:18 final size:18
Alignment explanation
Indices: 8713679--8713722 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8713669 TCACGAAATG
*
8713679 TAAGATTACCAGTGAGAA
1 TAAGATTACCAGCGAGAA
* *
8713697 TATGATTACCGGCGAGAA
1 TAAGATTACCAGCGAGAA
8713715 TAAGATTA
1 TAAGATTA
8713723 TTGGGAATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (18 bp):
TAAGATTACCAGCGAGAA
Found at i:8713876 original size:11 final size:11
Alignment explanation
Indices: 8713860--8713885 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8713850 TAACAAGTTG
8713860 AATTCTACTAT
1 AATTCTACTAT
8713871 AATTCTACTAT
1 AATTCTACTAT
8713882 AATT
1 AATT
8713886 AATTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTCTACTAT
Found at i:8716801 original size:12 final size:13
Alignment explanation
Indices: 8716784--8716812 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
8716774 TTTATTTGTG
8716784 AAAATTAAAA-TT
1 AAAATTAAAATTT
8716796 AAAATTAAAATTT
1 AAAATTAAAATTT
8716809 AAAA
1 AAAA
8716813 CGTTCGATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATTAAAATTT
Found at i:8716939 original size:31 final size:29
Alignment explanation
Indices: 8716887--8716973 Score: 77
Period size: 31 Copynumber: 2.8 Consensus size: 29
8716877 TTAGATGATA
* * *
8716887 AAATAAAAGAAATATCGAATAAAAATTAATT
1 AAATAAAAGAAAAAT-AAATAAAAA-TAAAT
8716918 AAATAAAAAGAAAAATAAATAAGTAAATAAAT
1 AAAT-AAAAGAAAAATAAATAA--AAATAAAT
*
8716950 AAATCAAAGAAAAA-AAATTAAAAA
1 AAATAAAAGAAAAATAAA-TAAAAA
8716974 ATGTTATATA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
29 3 0.06
30 3 0.06
31 21 0.44
32 18 0.38
33 3 0.06
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (29 bp):
AAATAAAAGAAAAATAAATAAAAATAAAT
Found at i:8718670 original size:170 final size:169
Alignment explanation
Indices: 8718366--8718751 Score: 490
Period size: 170 Copynumber: 2.3 Consensus size: 169
8718356 ATCAATACGC
* * * * * * *
8718366 CATCGAGCTAAATGGGATCGAACTCAAAATTTTTCATTGACCGATAACCCTTTCTGCCTTGAGTT
1 CATCGAGCTGAATGGAATCGAACTCGAAAGTTTTCATTGACAGATAACCCTTTCTACCGTGAGTT
* * *
8718431 ACGCTGTACTAGGCTGAGAGATTGCCCCAGAACTTCTTCTTGACTTAAAAACCATGGCTTCGACC
66 ACGCTGTACTAAGCTGAGAGATTACCCCAGAACTTCTTCTTGACTTAAAAACCATGGCTTCAACC
* *
8718496 AGAAAGTAGATTCTTGATGCTACTATGCGGTTGATGTGT
131 AGAAAGTAGATTCTTGATGCTACCATGCAGTTGATGTGT
* * *
8718535 CATCGAGTTGAATGGAATCGAACACGAAAGTTTTCATTGACATATAACCC-TTCTCACCGTGAGT
1 CATCGAGCTGAATGGAATCGAACTCGAAAGTTTTCATTGACAGATAACCCTTTCT-ACCGTGAGT
* * ** * *
8718599 TATGCTTTACTAAATTTGAGAGATTACCCCAGATCTTCTTCTTGACTTAAAGACC-TCGGCTTCA
65 TACGCTGTACT-AAGCTGAGAGATTACCCCAGAACTTCTTCTTGACTTAAAAACCAT-GGCTTCA
* *
8718663 ACCAGAAAGTAGTTTCTTGATGCTACCATGTAGTTGATGTGT
128 ACCAGAAAGTAGATTCTTGATGCTACCATGCAGTTGATGTGT
* * *
8718705 CATCGAGCTGAATAGAATCGAACTCGAAAGTTTT-GTTGATAGATAAC
1 CATCGAGCTGAATGGAATCGAACTCGAAAGTTTTCATTGACAGATAAC
8718752 TTTTCTCGAC
Statistics
Matches: 185, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
168 4 0.02
169 69 0.37
170 112 0.61
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (169 bp):
CATCGAGCTGAATGGAATCGAACTCGAAAGTTTTCATTGACAGATAACCCTTTCTACCGTGAGTT
ACGCTGTACTAAGCTGAGAGATTACCCCAGAACTTCTTCTTGACTTAAAAACCATGGCTTCAACC
AGAAAGTAGATTCTTGATGCTACCATGCAGTTGATGTGT
Found at i:8718950 original size:86 final size:85
Alignment explanation
Indices: 8718720--8719032 Score: 412
Period size: 85 Copynumber: 3.7 Consensus size: 85
8718710 AGCTGAATAG
* * ** * * * *
8718720 AATCGAACTCGAAAGT-TTTGTTGATAGATAACTTTTCTCGACTTAAGCTATGCTGCAAATTTGA
1 AATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGA
* *
8718784 CATGCCTTTGAGCTAAGTGT
66 TATGCCTTTGAGCTGAGTGT
* * * *
8718804 AATCAAACTCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATACTGTAAATTGGA
1 AATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGA
*
8718869 TGTGCCTTTGAGCTGAGTGT
66 TATGCCTTTGAGCTGAGTGT
* * * *
8718889 AATCGAACTTGAAGGTCTTTTGTTAACAAATAACCCTTCTCTCCTTGAGTTATGCTGTAAATTTG
1 AATCGAACTCGAAGGTC-TTTGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTG
8718954 ATATGCCTTTGAGCTGAGTGT
65 ATATGCCTTTGAGCTGAGTGT
* * *
8718975 AATCGAACTCGAAGGTCTTTGATGACAGATAACCCTTATCGCCTTGAGTTATGTTGTA
1 AATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTA
8719033 CTGGGCTGGG
Statistics
Matches: 196, Mismatches: 31, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
84 14 0.07
85 105 0.54
86 77 0.39
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (85 bp):
AATCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTCGCCTTGAGTTATGCTGTAAATTTGA
TATGCCTTTGAGCTGAGTGT
Found at i:8719262 original size:32 final size:32
Alignment explanation
Indices: 8719226--8719333 Score: 85
Period size: 32 Copynumber: 3.3 Consensus size: 32
8719216 ATCCTTCTTC
8719226 GTGAAGTTGAAATCATAGATGGCTCATTCGTT
1 GTGAAGTTGAAATCATAGATGGCTCATTCGTT
* * * * * *
8719258 GTGAAGTTG--AGCTTTGAATTGGATATCCTTCGTC
1 GTGAAGTTGAAATCATAG-A-TGG--CTCATTCGTT
* * *
8719292 GTGAAGTTGAAATCGTGGATGGCTCATTTGTT
1 GTGAAGTTGAAATCATAGATGGCTCATTCGTT
8719324 GTGAAGTTGA
1 GTGAAGTTGA
8719334 GCTTTGAATT
Statistics
Matches: 57, Mismatches: 13, Indels: 12
0.70 0.16 0.15
Matches are distributed among these distances:
30 4 0.07
31 1 0.02
32 28 0.49
34 19 0.33
35 1 0.02
36 4 0.07
ACGTcount: A:0.24, C:0.11, G:0.29, T:0.36
Consensus pattern (32 bp):
GTGAAGTTGAAATCATAGATGGCTCATTCGTT
Found at i:8719296 original size:34 final size:34
Alignment explanation
Indices: 8719252--8719367 Score: 123
Period size: 34 Copynumber: 3.5 Consensus size: 34
8719242 AGATGGCTCA
8719252 TTCGTTGTGAAGTTGAGCTTTGAATTGGATATCC
1 TTCGTTGTGAAGTTGAGCTTTGAATTGGATATCC
* ** * * *
8719286 TTCGTCGTGAAGTTGAAATCGTGGA-TGGCTCAT--
1 TTCGTTGTGAAGTTGAGCT-TTGAATTGGAT-ATCC
8719319 TT-GTTGTGAAGTTGAGCTTTGAATTGGATATCC
1 TTCGTTGTGAAGTTGAGCTTTGAATTGGATATCC
*
8719352 TTTGTTGTGAAGTTGA
1 TTCGTTGTGAAGTTGA
8719368 AATCCAAGGG
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
31 5 0.08
32 17 0.27
33 4 0.06
34 33 0.52
35 5 0.08
ACGTcount: A:0.21, C:0.10, G:0.28, T:0.41
Consensus pattern (34 bp):
TTCGTTGTGAAGTTGAGCTTTGAATTGGATATCC
Found at i:8719299 original size:121 final size:121
Alignment explanation
Indices: 8719085--8719305 Score: 327
Period size: 121 Copynumber: 1.8 Consensus size: 121
8719075 GTCTATCCGT
* * *
8719085 TAGGCAGGATATCATTCGTCGTGAAGTTAAAATCGTGGATAGCTTCTTCGTTCTGAAATAGAGCT
1 TAGGCACGATATCATTCGTCGTGAAGTTAAAATCATAGATAGCTTCTTCGTTCTGAAATAGAGCT
8719150 TTAAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGTTGCTTC
66 TTAAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGTTGCTTC
* * * * * * *
8719206 TAGGCACGATATCCTTCTTCGTGAAGTTGAAATCATAGATGGC-TCATTCGTTGTGAAGTTGAGC
1 TAGGCACGATATCATTCGTCGTGAAGTTAAAATCATAGATAGCTTC-TTCGTTCTGAAATAGAGC
*
8719270 TTTGAATTGGATATCCTTCGTCGTGAAGTTGAAATC
65 TTTAAATTGGATATCCTTCGTCGTGAAGTTGAAATC
8719306 GTGGATGGCT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
120 2 0.02
121 86 0.98
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (121 bp):
TAGGCACGATATCATTCGTCGTGAAGTTAAAATCATAGATAGCTTCTTCGTTCTGAAATAGAGCT
TTAAATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGTTGCTTC
Found at i:8719319 original size:66 final size:66
Alignment explanation
Indices: 8719213--8719371 Score: 264
Period size: 66 Copynumber: 2.4 Consensus size: 66
8719203 TTCTAGGCAC
*
8719213 GATATCCTTCTTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
8719278 G
66 G
* * *
8719279 GATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTTGTTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
8719344 G
66 G
* *
8719345 GATATCCTTTGTTGTGAAGTTGAAATC
1 GATATCCTTCGTCGTGAAGTTGAAATC
8719372 CAAGGGTTGC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 87 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (66 bp):
GATATCCTTCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
G
Found at i:8719406 original size:187 final size:187
Alignment explanation
Indices: 8719091--8719855 Score: 629
Period size: 187 Copynumber: 4.1 Consensus size: 187
8719081 CCGTTAGGCA
* * * * * * *
8719091 GGATATCATTCGTCGTGAAGTTAAAATCGTGGATAGCTTC-TTCGTTCTGAAATAGAGCTTTAAA
1 GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGC-TCATTTGTTCTGAAGTTGAGCTTTGAA
* *
8719155 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGTTGCTTCTAGGCACGATATCC
65 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCACGATATCC
*
8719220 TTCTTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
130 TTCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
*
8719278 GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTTGTTGTGAAGTTGAGCTTTGAAT
1 GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTTGTTCTGAAGTTGAGCTTTGAAT
* *
8719343 TGGATATCCTTTGTTGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCACGATATCCT
66 TGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCACGATATCCT
* * * * * *
8719408 TCGTCGTAAAGTTAAAATCGTGGGTGGCTCATTCATTGTGAAGTTGAGCTTTGAATT
131 TCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * * * ** * * * *
8719465 GGATATCATTCATCATGAAGTTGAAGTC--CAAGGGTTGCA-TTGCTTCT--TG-TGGGC----A
1 GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCT-CATTTG-TTCTGAAGTTGAGCTTTGA
*** * *
8719520 CA----ATATCCTTCGTCGTGAAGTTGAAAT-TGTGGGTGGCTCATTTGTTG-TGATGTTGAGCT
64 -ATTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTG--CA-TTGCTGCT--TG-T-AG--
* * * * * *
8719579 TTGAATTGGATATCATTCGTCGTGAAATTGAAATCCA-AG--GGTTGCATT-GTT-T---CTT--
119 --GCA--CGATATCCTTCGTCGTGAAGTTGAAAT-CATAGATGGCT-CATTCGTTGTGAAGTTGA
** *
8719634 G-TGGGCA--
178 GCTTTGAATT
* * * *
8719641 CGATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCCTTCT-TTGTGAAGTTGAGCTTTGAA
1 GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATT-TGTTCTGAAGTTGAGCTTTGAA
* * *
8719705 TTGGATATCCTTCGTTGTGAGGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCACGATATCC
65 TTGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCACGATATCC
* * *
8719770 TTCGTCATGAAGTTGAAATCATGGATGGCTCCTTCGTTGTGAAGTTGAGCTTTGAATT
130 TTCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * *
8719828 AGATATCCTTCGTCGTGAGGTTGGAATC
1 GGATATCCTTCGTCGTGAAGTTGAAATC
8719856 CAAGGGTTGC
Statistics
Matches: 441, Mismatches: 88, Indels: 98
0.70 0.14 0.16
Matches are distributed among these distances:
175 7 0.02
176 70 0.16
177 10 0.02
178 20 0.05
179 7 0.02
180 6 0.01
181 4 0.01
182 3 0.01
183 6 0.01
184 6 0.01
185 22 0.05
186 14 0.03
187 260 0.59
188 6 0.01
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (187 bp):
GGATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTTGTTCTGAAGTTGAGCTTTGAAT
TGGATATCCTTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCACGATATCCT
TCGTCGTGAAGTTGAAATCATAGATGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
Found at i:8719410 original size:121 final size:121
Alignment explanation
Indices: 8719279--8720030 Score: 1135
Period size: 121 Copynumber: 6.2 Consensus size: 121
8719269 CTTTGAATTG
* *
8719279 GATATCCTTCGTCGTGAAGTTGAAATCGTGGATGGCTCATTTGTTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * * *
8719344 GGATATCCTTTGTTGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTAGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
* * *
8719400 GATATCCTTCGTCGTAAAGTTAAAATCGTGGGTGGCTCATTCATTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * * *
8719465 GGATATCATTCATCATGAAGTTGAAGTCCAAGGGTTGCATTGCTTCTTGTGGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
* * * *
8719521 AATATCCTTCGTCGTGAAGTTGAAATTGTGGGTGGCTCATTTGTTGTGATGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * *
8719586 GGATATCATTCGTCGTGAAATTGAAATCCAAGGGTTGCATTGTTTCTTGTGGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
* *
8719642 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCCTTCTTTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * *
8719707 GGATATCCTTCGTTGTGAGGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
* * * *
8719763 GATATCCTTCGTCATGAAGTTGAAATCATGGATGGCTCCTTCGTTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * * *
8719828 AGATATCCTTCGTCGTGAGGTTGGAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
* * * *
8719884 GATATTCTTCGTCGTGAAGTTGAAATCATGGGTGGCTCCTTCATTGTGAAGTTGAGCTTTGAATT
1 GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
* * *
8719949 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGTATTACTGTTTGTGGGCAC
66 GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
*
8720005 GATATCCTTCGTCATGAAGTTGAAAT
1 GATATCCTTCGTCGTGAAGTTGAAAT
8720031 TGACTCTAAA
Statistics
Matches: 574, Mismatches: 57, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
121 574 1.00
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (121 bp):
GATATCCTTCGTCGTGAAGTTGAAATCGTGGGTGGCTCATTCGTTGTGAAGTTGAGCTTTGAATT
GGATATCATTCGTCGTGAAGTTGAAATCCAAGGGTTGCATTGCTGCTTGTGGGCAC
Found at i:8720092 original size:64 final size:64
Alignment explanation
Indices: 8720006--8720232 Score: 328
Period size: 64 Copynumber: 3.5 Consensus size: 64
8719996 TGTGGGCACG
** * * *
8720006 ATATCCTTCGTCATGAAGTTGAAATTGACTCTAAATGAAATTGGAATGTTGTTTGTTGAGTCTA
1 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAATGAAACTGGAAAGTTGTTTGTTGAGTCCA
** * * *
8720070 ATATCCTTCACTGTGGAGTTGAAATTGACTCTGAATGAAACTGGAAAGTTGTTTATTGAGTCCA
1 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAATGAAACTGGAAAGTTGTTTGTTGAGTCCA
* * * *
8720134 GTATCATTCGTTGTGAAGTTGAAATTAACTCTGAATGAAACTGGAAAGTTGTTTGTTGAGTCCA
1 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAATGAAACTGGAAAGTTGTTTGTTGAGTCCA
8720198 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAA
1 ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAA
8720233 AGCTGTAAAA
Statistics
Matches: 142, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 142 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (64 bp):
ATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAATGAAACTGGAAAGTTGTTTGTTGAGTCCA
Found at i:8721350 original size:102 final size:98
Alignment explanation
Indices: 8721154--8721353 Score: 276
Period size: 102 Copynumber: 2.0 Consensus size: 98
8721144 GGGACAACTC
*
8721154 AATATATAATCACCTTTATCAGGCTAGCTTAATATTATCCATAAAGCCGGGGCATTTAACCAATT
1 AATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCATTTAACCAATT
***
8721219 GCCTTAGAGGGACGGTTCAAGCTTTATTGTATA
66 GCCTTAGAGGGACAACTCAAGCTTTATTGTATA
* * * *
8721252 AATATTATAATCACCTTTATTAGGCTAGCTGAATCTTATCCATAAAGTCGGTGGTGCGTTTAACC
1 AATA-TATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAG-CCG-GG-GCATTTAACC
8721317 AATTG-CTCTAGAGGGACAACTCAAGCTTTATTGTATA
62 AATTGCCT-TAGAGGGACAACTCAAGCTTTATTGTATA
8721354 TATAAAATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
98 4 0.04
99 39 0.44
100 2 0.02
101 4 0.04
102 40 0.45
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (98 bp):
AATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCATTTAACCAATT
GCCTTAGAGGGACAACTCAAGCTTTATTGTATA
Found at i:8729817 original size:129 final size:130
Alignment explanation
Indices: 8729581--8729933 Score: 467
Period size: 130 Copynumber: 2.7 Consensus size: 130
8729571 GAACAATAAT
* * * * *
8729581 ATCTTTTCATTTTGGTTGGAGTAATAAATGACTTCTTTAAGGCATGAGAGGTCATTTATTCTCGA
1 ATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAA-GTATGAGAGGTCATTTATTCTCGA
* * * * *
8729646 TTGAAAATAATTCGATATTACCGTTTTCTCTCGAATTAATATTG-ATTTTAAGATGGAATAGTGA
65 TTGAAAATAATTAGATATTATCGTTTTCACTCGAATAAATATTGAATTTTAAGACGGAATAGTGA
8729710 C
130 C
* * *
8729711 ATCTCTTCATTTCGATTGGAGCAATAAATGACTGCTTTATA-TATGAAAGATCATTTATTCTCGA
1 ATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTA-AGTATGAGAGGTCATTTATTCTCGA
* * * *
8729775 TTGGAAATCATTAGATATTATCGTTTTCACTCGAATAAATATTGAATTTTAAGGCGGAATATTGA
65 TTGAAAATAATTAGATATTATCGTTTTCACTCGAATAAATATTGAATTTTAAGACGGAATAGTGA
*
8729840 T
130 C
* * *
8729841 ATATCTTCATTTCGATTGGAGTAATAAATGACTGTTTTAAGGTATTAGAGGTCATTTATTCTCGA
1 ATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAA-GTATGAGAGGTCATTTATTCTCGA
*
8729906 TTGAAAATAATTAGATATTATCATTTTC
65 TTGAAAATAATTAGATATTATCGTTTTC
8729934 TCTCTTAAAA
Statistics
Matches: 192, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
129 59 0.31
130 87 0.45
131 46 0.24
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (130 bp):
ATCTCTTCATTTCGATTGGAGTAATAAATGACTGCTTTAAGTATGAGAGGTCATTTATTCTCGAT
TGAAAATAATTAGATATTATCGTTTTCACTCGAATAAATATTGAATTTTAAGACGGAATAGTGAC
Found at i:8733670 original size:26 final size:28
Alignment explanation
Indices: 8733620--8733673 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
8733610 CCCCCTCGCA
*
8733620 TATTTTTTCATTCTTTATTTATTATATAT
1 TATTATTTCATTC-TTATTTATTATATAT
8733649 TATTATTTCATTC-TATTT-TTATATA
1 TATTATTTCATTCTTATTTATTATATA
8733674 GGATAGATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 5 0.21
29 12 0.50
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (28 bp):
TATTATTTCATTCTTATTTATTATATAT
Found at i:8734833 original size:15 final size:15
Alignment explanation
Indices: 8734813--8734843 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8734803 TTTGAGGATT
8734813 CATAGGAAGATTAAA
1 CATAGGAAGATTAAA
8734828 CATAGGAAGATTAAA
1 CATAGGAAGATTAAA
8734843 C
1 C
8734844 TACATCTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (15 bp):
CATAGGAAGATTAAA
Found at i:8737071 original size:22 final size:21
Alignment explanation
Indices: 8737046--8737123 Score: 68
Period size: 22 Copynumber: 3.5 Consensus size: 21
8737036 AAAAATGAAA
*
8737046 AAAAGGAAAAAAGAGAAAAGAG
1 AAAAGGAAAAAAAAGAAAA-AG
* *
8737068 AAAAGAAATAAAAAATAAAAAG
1 AAAAGGAA-AAAAAAGAAAAAG
*
8737090 AAAAGAGAAAATAAAAAAGAAAAG
1 AAAAG-GAAAA-AAAAGA-AAAAG
8737114 AAAA-GAAAAA
1 AAAAGGAAAAA
8737124 GATAACAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.02
22 21 0.45
23 16 0.34
24 9 0.19
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (21 bp):
AAAAGGAAAAAAAAGAAAAAG
Found at i:8737080 original size:24 final size:22
Alignment explanation
Indices: 8737053--8737121 Score: 77
Period size: 24 Copynumber: 3.0 Consensus size: 22
8737043 AAAAAAAGGA
8737053 AAAAAGAGAAAAGAGAAAAGAAAT
1 AAAAA-AGAAAA-AGAAAAGAAAT
*
8737077 AAAAAATAAAAAGAAAAGAGAAAAT
1 AAAAAAGAAAAAG-AAA-AG-AAAT
8737102 AAAAAAG-AAAAGAAAAGAAA
1 AAAAAAGAAAAAGAAAAGAAA
8737122 AAGATAACAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
21 3 0.08
22 4 0.10
23 11 0.28
24 12 0.30
25 10 0.25
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (22 bp):
AAAAAAGAAAAAGAAAAGAAAT
Found at i:8737097 original size:29 final size:28
Alignment explanation
Indices: 8737052--8737137 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
8737042 GAAAAAAAGG
* *
8737052 AAAAAAGAGAAAAGAGAAAAGAAATAAA
1 AAAAAAAAGAAAAGAGAAAACAAATAAA
*
8737080 AAATAAAAAGAAAAGAGAAAATAAA-AAA
1 AAA-AAAAAGAAAAGAGAAAACAAATAAA
*
8737108 GAAAAGAAAAGAAAA-AGATAACAAATAAA
1 -AAAA-AAAAGAAAAGAGAAAACAAATAAA
8737137 A
1 A
8737138 GGGGGTTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
28 16 0.32
29 34 0.68
ACGTcount: A:0.79, C:0.01, G:0.14, T:0.06
Consensus pattern (28 bp):
AAAAAAAAGAAAAGAGAAAACAAATAAA
Found at i:8738562 original size:134 final size:134
Alignment explanation
Indices: 8738322--8739160 Score: 1040
Period size: 134 Copynumber: 6.3 Consensus size: 134
8738312 ATCGAACTCA
* * *
8738322 ATTCAATCTTCCATGAGTAACAGTGGAATTAATCAACGTCCCTAGATCA-GATTTTCCCTCAAGA
1 ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCCAGAT-ATGATTTTCCCTCAAGA
* *
8738386 AGAAGTGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTG
65 AGAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTA
8738451 CCTCG
130 CCTCG
* * * **
8738456 ATTCAGTCTTCTCTAAAG-AACAGTGGAATGAATCAATATCCCCAGATATGATTTTCCCTCAAGA
1 ATTCAATCTTCCCT-GAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGA
* * *
8738520 ATAAGTGGAACATATCCCTCTCTTTCAAGATTTGA-CATTCCCTGAGTAACAGTGGAATAAGTCT
65 AGAAGCGGAACATATCCCTCTCTTTCAAGATTTGATC-TTCCCTGAGTAACAGTGGAACAAGTCT
*
8738584 ACCTCA
129 ACCTCG
* * * * *
8738590 ATTCTATCTTCCATTGAG-AACAATGGAATGAATCAACGTCCCCAGATCTGATTTTCCC-CTAGA
1 ATTCAATCTTCC-CTGAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGA
* * * *
8738653 AGAAGCAGAACATATCCCTCTATTTCAAGATTTGATCTTCCCTGAGTAAAAGTGGAACAAGTCTG
65 AGAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTA
*
8738718 CCTCT
130 CCTCG
* ** * * *
8738723 ATTCAATATTCTTTGAGTAACAGTGGAATGAATCAATGTCCCCAGATCTAATTTTCCCTCAAGAA
1 ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGAA
* * * * *
8738788 GAAGTGGAATATATCCATCTCTTTCAAGATTTGATCTTCCCTGAGTAATAGTGGAACAAGTTTAC
66 GAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTAC
8738853 CTCG
131 CTCG
* * * * * *
8738857 ATTAAATCTTCCCTGAGTAACAATGGAATGAATCAACGTCCCTAAATCTAATTTTCCCTCAAGAA
1 ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGAA
* * * * * *
8738922 GAAGCGGAACATATCACTGTCTTTCAAGATTTTATCTTCCTTGAGTAACAATGGAACAAGTCTGC
66 GAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTAC
8738987 CTCG
131 CTCG
* * * * * *
8738991 ATTCAATCTTCCCTGAGTAATAGTGGAATGAATTAACATACCCATATATGATTTTCCCTTAAGAA
1 ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGAA
* * * * * *
8739056 GAAGCGGAATAGATCCCTATCTTTCAAGATTTGAGCTTTCCTAAGTAACAGTGGAACAAGTCTAC
66 GAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTAC
8739121 CTCG
131 CTCG
* * * *
8739125 ATTTAATCTTCCCTGAGGAACAGTTGAATGATTCAA
1 ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAA
8739161 TGTTTCTCAA
Statistics
Matches: 605, Mismatches: 93, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
132 5 0.01
133 112 0.19
134 485 0.80
135 3 0.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (134 bp):
ATTCAATCTTCCCTGAGTAACAGTGGAATGAATCAACGTCCCCAGATATGATTTTCCCTCAAGAA
GAAGCGGAACATATCCCTCTCTTTCAAGATTTGATCTTCCCTGAGTAACAGTGGAACAAGTCTAC
CTCG
Found at i:8739339 original size:3 final size:3
Alignment explanation
Indices: 8739331--8739476 Score: 188
Period size: 3 Copynumber: 48.3 Consensus size: 3
8739321 TTTGACCCGC
* * * *
8739331 TAT TAT TA- TAT TATT TAT TAAT AAT AAA TAT TAT TATT TAT TAA TAT
1 TAT TAT TAT TAT TA-T TAT T-AT TAT TAT TAT TAT TA-T TAT TAT TAT
* *
8739378 TAT TAA TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
8739426 TAT TAG TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8739473 TAT T
1 TAT T
8739477 TATTTCTGTA
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
2 4 0.03
3 115 0.91
4 8 0.06
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:8739366 original size:16 final size:16
Alignment explanation
Indices: 8739345--8739385 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8739335 ATTATATTAT
8739345 TTATTAATAATAAATA
1 TTATTAATAATAAATA
* * *
8739361 TTATTATTTATTAATA
1 TTATTAATAATAAATA
8739377 TTATTAATA
1 TTATTAATA
8739386 TCATTATTAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTATTAATAATAAATA
Found at i:8741752 original size:131 final size:131
Alignment explanation
Indices: 8741551--8741920 Score: 492
Period size: 131 Copynumber: 2.8 Consensus size: 131
8741541 ATCGATATTG
* * * * *
8741551 AGAATAATAATATCTTTTCATTTCGGTTGGAGTAATAAATGATTGCTTTAAGGCATGAGAGGTCA
1 AGAATAATGATATCTCTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
* * * * * *
8741616 TTTATTCTCTATTGGAAATAATTCGATATCACCGTTTTCTCTTGAATTAATATTG-ATTTTAAAG
66 TTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATATTGAATTTT-AAG
8741680 AT
130 AT
* * *
8741682 AGAATAGTGATATCTCTTCATTTCGATTGGAGCAATAAATGAATGCTTCAAGGTATGAGAGGTCA
1 AGAATAATGATATCTCTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
* * * *
8741747 TTTATT-TCAGATTGGAAATCATTAGATATTATTGTTTTCACTCGAATCGATATTGAATTTTAAG
66 TTTATTCTC-GATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATATTGAATTTTAAG
8741811 AT
130 AT
* * * * *
8741813 GGAATAATGATATCTCTTCATTTCGATTGGAGTAATAAATGACTGTTTTAAGATATGAGAGGTCT
1 AGAATAATGATATCTCTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
*
8741878 TTTGTTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTC
66 TTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTC
8741921 TTAAAATTAT
Statistics
Matches: 206, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
130 2 0.01
131 197 0.96
132 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (131 bp):
AGAATAATGATATCTCTTCATTTCGATTGGAGTAATAAATGAATGCTTTAAGGTATGAGAGGTCA
TTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTCGAATCAATATTGAATTTTAAGA
T
Found at i:8753136 original size:16 final size:16
Alignment explanation
Indices: 8753115--8753146 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8753105 AGAAGGTAAA
*
8753115 TAATTTAAGTTTATGT
1 TAATTTAAATTTATGT
8753131 TAATTTAAATTTATGT
1 TAATTTAAATTTATGT
8753147 ATGTCAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.56
Consensus pattern (16 bp):
TAATTTAAATTTATGT
Found at i:8755143 original size:45 final size:45
Alignment explanation
Indices: 8755096--8755511 Score: 539
Period size: 45 Copynumber: 9.3 Consensus size: 45
8755086 TATGAATTGA
* *
8755096 CATAAAAGGTTCCATAAATGAAAATGCATAACGGTGCATTATCGA
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* * * *
8755141 CATAAAAGGTACCATAAATGAAAATGCATAATGGTGTATTATCGA
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* * *** * *
8755186 CATAAAATGTGCCATAAATAAAAATGCATAAAAATTCATTATCGA
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
**
8755231 CATAAAAGGTGCCATAAATGAAAATGTGTAACGGTGCATTATCGG
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* *
8755276 CATAAAATGTGCCATAAATGAAAATGCATAACGGTGCATTATTGG
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* * *
8755321 CATAAAAGATTCCATAAATGAAAATGCATAACGGTGCATTTTCGG
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* *
8755366 TATAAAAGGTGCCATAAATGAAAATGCATAACGGTGTATTATCGG
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
** * *
8755411 CATAAAAGGTGCCATAAGGGGAAATGCATAACGGTGTATTATCGG
1 CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
* * * *
8755456 TATAAAA-GTGACACT-AATGAAAATGTATAACGGTGCATTATTGG
1 CATAAAAGGTGCCA-TAAATGAAAATGCATAACGGTGCATTATCGG
8755500 CATAAAAGGTGC
1 CATAAAAGGTGC
8755512 AACTCATGGT
Statistics
Matches: 321, Mismatches: 48, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
44 34 0.11
45 287 0.89
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (45 bp):
CATAAAAGGTGCCATAAATGAAAATGCATAACGGTGCATTATCGG
Found at i:8758306 original size:20 final size:20
Alignment explanation
Indices: 8758281--8758329 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
8758271 CTGATGTGGG
8758281 TATCGATACTAAGAGTAAGA
1 TATCGATACTAAGAGTAAGA
8758301 TATCGATACTAAGAGTAAGA
1 TATCGATACTAAGAGTAAGA
8758321 TATCGATAC
1 TATCGATAC
8758330 CATGGATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
TATCGATACTAAGAGTAAGA
Found at i:8758937 original size:45 final size:45
Alignment explanation
Indices: 8758886--8759170 Score: 311
Period size: 45 Copynumber: 6.3 Consensus size: 45
8758876 CTATGAATCA
** *
8758886 GCATAAAATGTGCCATAAATGAAAATACATAATAATACATTATCG
1 GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
* * * * *
8758931 ACATAAAAGGTGCCATAAATGAAAATGCATAACGGTGTATTATCG
1 GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
*
8758976 GCATAAAATGTGCCATAAATGAAAATGCATAATGGTGCATTATCG
1 GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
* * *
8759021 GCATAAAA-GATGCCATAAATGAAAATACATAACGGTGAATTATTG
1 GCATAAAATG-TGCCATAAATGAAAATACATAATGGTGCATTATCG
* * * * * *
8759066 GTATAAAAGGTGCCATAAATAAAAATGCATAACGGTGCATTATCA
1 GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
* * * * * * * *
8759111 ACATAAAAGGTTCCATTAAGGGAAATGCATAACGGTGCATTATCG
1 GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
*
8759156 GCATAAAAGGTGCCA
1 GCATAAAATGTGCCA
8759171 CTCATGGTAT
Statistics
Matches: 206, Mismatches: 32, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
44 1 0.00
45 204 0.99
46 1 0.00
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.25
Consensus pattern (45 bp):
GCATAAAATGTGCCATAAATGAAAATACATAATGGTGCATTATCG
Found at i:8758992 original size:90 final size:90
Alignment explanation
Indices: 8758886--8759170 Score: 390
Period size: 90 Copynumber: 3.2 Consensus size: 90
8758876 CTATGAATCA
* * ** *
8758886 GCATAAAATGTGCCATAAATGAAAATACATAATAATACATTATCGACATAAAAGGTGCCATAAAT
1 GCATAAAAGGTGCCATAAATGAAAATGCATAATGGTGCATTATCGACATAAAAGGTGCCATAAAT
*
8758951 GAAAATGCATAACGGTGTATTATCG
66 GAAAATGCATAACGGTGAATTATCG
* * *
8758976 GCATAAAATGTGCCATAAATGAAAATGCATAATGGTGCATTATCGGCATAAAAGATGCCATAAAT
1 GCATAAAAGGTGCCATAAATGAAAATGCATAATGGTGCATTATCGACATAAAAGGTGCCATAAAT
* *
8759041 GAAAATACATAACGGTGAATTATTG
66 GAAAATGCATAACGGTGAATTATCG
* * * * * * *
8759066 GTATAAAAGGTGCCATAAATAAAAATGCATAACGGTGCATTATCAACATAAAAGGTTCCATTAAG
1 GCATAAAAGGTGCCATAAATGAAAATGCATAATGGTGCATTATCGACATAAAAGGTGCCATAAAT
* *
8759131 GGAAATGCATAACGGTGCATTATCG
66 GAAAATGCATAACGGTGAATTATCG
8759156 GCATAAAAGGTGCCA
1 GCATAAAAGGTGCCA
8759171 CTCATGGTAT
Statistics
Matches: 171, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 171 1.00
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.25
Consensus pattern (90 bp):
GCATAAAAGGTGCCATAAATGAAAATGCATAATGGTGCATTATCGACATAAAAGGTGCCATAAAT
GAAAATGCATAACGGTGAATTATCG
Found at i:8759063 original size:135 final size:134
Alignment explanation
Indices: 8758886--8759170 Score: 383
Period size: 135 Copynumber: 2.1 Consensus size: 134
8758876 CTATGAATCA
*
8758886 GCATAAAATGTGCCATAAATGAAAATACATAATAATACATTATCGACATAAAAGGTGCCATAAAT
1 GCATAAAA-GTGCCATAAATGAAAATACATAACAATACATTATCGACATAAAAGGTGCCATAAAT
* * ** * * *
8758951 GAAAATGCATAACGGTGTATTATCGGCATAAAATGTGCCATAAATGAAAATGCATAATGGTGCAT
65 AAAAATGCATAACGGTGCATTATCAACATAAAAGGTGCCATAAAGGAAAATGCATAACGGTGCAT
8759016 TATCG
130 TATCG
** * **
8759021 GCATAAAAGATGCCATAAATGAAAATACATAACGGTGA-ATTATTGGTATAAAAGGTGCCATAAA
1 GCATAAAAG-TGCCATAAATGAAAATACATAACAAT-ACATTATCGACATAAAAGGTGCCATAAA
* * *
8759085 TAAAAATGCATAACGGTGCATTATCAACATAAAAGGTTCCATTAAGGGAAATGCATAACGGTGCA
64 TAAAAATGCATAACGGTGCATTATCAACATAAAAGGTGCCATAAAGGAAAATGCATAACGGTGCA
8759150 TTATCG
129 TTATCG
8759156 GCATAAAAGGTGCCA
1 GCATAAAA-GTGCCA
8759171 CTCATGGTAT
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
134 1 0.01
135 128 0.98
136 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.25
Consensus pattern (134 bp):
GCATAAAAGTGCCATAAATGAAAATACATAACAATACATTATCGACATAAAAGGTGCCATAAATA
AAAATGCATAACGGTGCATTATCAACATAAAAGGTGCCATAAAGGAAAATGCATAACGGTGCATT
ATCG
Found at i:8762788 original size:118 final size:117
Alignment explanation
Indices: 8762559--8762800 Score: 403
Period size: 118 Copynumber: 2.1 Consensus size: 117
8762549 GACTAATATA
8762559 GATACTATGCTTCATGGTATCAATACCACTGTGTAAAGTAGTATTGGTACCCCTTGAGTATCAAT
1 GATACTATGCTTCATGGTATCAATACCACTGTGTAAAGTAGTATTGGTACCCCTTGAGTATCAAT
* * *
8762624 ACCTATTTTGCATTCTGGAATTTGAGAAATTTGGAAAACACCTGGTAGTATC
66 ACCTATTTTGCATTATGGAATTTGAGAAATTTAGAAAACACATGGTAGTATC
* * **
8762676 GATACTATGCTTCATGGTATCGATACCACTGTGTAAAGTAGTATTGTTACCCCATTGAGTATCGG
1 GATACTATGCTTCATGGTATCAATACCACTGTGTAAAGTAGTATTGGTACCCC-TTGAGTATCAA
*
8762741 TACCTATTTTGCATTATGGAATTTGAGCAATTTAGAAAACACATGGTAGTATC
65 TACCTATTTTGCATTATGGAATTTGAGAAATTTAGAAAACACATGGTAGTATC
8762794 GATACTA
1 GATACTA
8762801 CCTATAGAGT
Statistics
Matches: 116, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
117 51 0.44
118 65 0.56
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (117 bp):
GATACTATGCTTCATGGTATCAATACCACTGTGTAAAGTAGTATTGGTACCCCTTGAGTATCAAT
ACCTATTTTGCATTATGGAATTTGAGAAATTTAGAAAACACATGGTAGTATC
Found at i:8769858 original size:6 final size:6
Alignment explanation
Indices: 8769847--8769880 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
8769837 TGGTTGATGG
8769847 TGTTGA TGTTGA TGTTGA TGTTGAA TGGTTGA TG
1 TGTTGA TGTTGA TGTTGA TGTTG-A T-GTTGA TG
8769881 ATGAGGATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 18 0.69
7 4 0.15
8 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (6 bp):
TGTTGA
Found at i:8775968 original size:50 final size:51
Alignment explanation
Indices: 8775886--8775985 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 51
8775876 GCATTAATCA
* * * *
8775886 ATCTTCCTTTGGCCGAATGGTGACATGTTGGTTCATTTTGGTGCCAAAGTT
1 ATCTTCCTTTGGCCGAATGATGACATGATGGTTCATCTTGGCGCCAAAGTT
***
8775937 ATCTTCC-TTGGCCGAATGATGTTGTGATGGTTCATCTTGGCGCCAAAGT
1 ATCTTCCTTTGGCCGAATGATGACATGATGGTTCATCTTGGCGCCAAAGT
8775986 CTTCATGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
50 35 0.83
51 7 0.17
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (51 bp):
ATCTTCCTTTGGCCGAATGATGACATGATGGTTCATCTTGGCGCCAAAGTT
Found at i:8777867 original size:22 final size:22
Alignment explanation
Indices: 8777841--8777898 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
8777831 ACTGAAAGGG
8777841 AGTATCGGTACCATAGTATAGA
1 AGTATCGGTACCATAGTATAGA
8777863 AGTATCGGTACCATAGTATAGA
1 AGTATCGGTACCATAGTATAGA
*
8777885 AGTATCGATACCAT
1 AGTATCGGTACCAT
8777899 GGTAGGGGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (22 bp):
AGTATCGGTACCATAGTATAGA
Found at i:8778362 original size:44 final size:44
Alignment explanation
Indices: 8778313--8778922 Score: 842
Period size: 44 Copynumber: 13.9 Consensus size: 44
8778303 CTACTATAAA
* * *
8778313 ATAAATGAAAATGCATAATGGTGCATTATTGGCATAAAGGTGAC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
** * *
8778357 ATAAATGAAAATGCATAACAATGCATTATTGGTAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
*
8778401 ATAAATGAGAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
** * * *
8778445 ATAAATGAAAATGCATAACAATGCATTATTGGAAGAAATGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * * ** *
8778489 ATAAATGAGAATACAAAACAATGCATTATTGGCAGAAAGGGGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* *
8778533 ATAAATGAAAATGCATAACGGTGTATTATTGGCAGAAAGGTTCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* *
8778577 GTAAATGAGAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * *
8778621 ATAAATGAGAATGCATAAGGGTGCATTATTGGCAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* ** * *
8778665 ATAAATGAAAATACATAATAGTACATTATTGGTAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
8778709 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * *
8778753 ATGAATGAAAATGCATAATGGTGCATTATTGGCAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* *
8778797 ATAAATGAGAATGCATAACGGTGCATTATTGGAAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * *
8778841 ATAAATGAAAATGTATAGCGGTGCATTATTGGCAGAAAGGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * *
8778885 ATAAATGAAAATACATAATGGTACATTATTGGCAGAAA
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAA
8778923 TATGCCACTT
Statistics
Matches: 496, Mismatches: 70, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 496 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (44 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
Found at i:8784889 original size:44 final size:44
Alignment explanation
Indices: 8784840--8785258 Score: 561
Period size: 44 Copynumber: 9.5 Consensus size: 44
8784830 CTGCTCTAAA
* *
8784840 ATAAATGAAAATGTATAACGGTGCATTATTAGCAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* * *
8784884 ATAAATGAGAATGCATAACGGTGCATTATTGGCAGAAAAGTGTC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* * * * *
8784928 ATAAATGAAAATGCATAACGGCGCATTATTTGTAGAAATATACC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* *
8784972 ATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* **
8785016 ATAAATGAAAATGCATAACGGTG-ATTTATTTGCAGAAATGTGTT
1 ATAAATGAAAATGCATAACGGTGCA-TTATTGGCAGAAATGTGCC
* * * **
8785060 ATAAATGAGAATGTATAACGGTGCATTTTTTACAGAAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAG-AAATGTGCC
* *
8785105 ATAAATGAAAATGCATAACGGTGCATTATTGGCATAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* * * *
8785149 ATAAATGAAAATGCAGAACGATGTATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
* *
8785193 ATAAATGAAAATGCATATCGGTGCATTATTTGCAGAAATGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
8785237 ATAAATGAAAATGCATAACGGT
1 ATAAATGAAAATGCATAACGGT
8785259 ATAGTATTGG
Statistics
Matches: 324, Mismatches: 48, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
43 1 0.00
44 286 0.88
45 37 0.11
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.27
Consensus pattern (44 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAATGTGCC
Found at i:8785222 original size:221 final size:220
Alignment explanation
Indices: 8784840--8785258 Score: 642
Period size: 221 Copynumber: 1.9 Consensus size: 220
8784830 CTGCTCTAAA
*
8784840 ATAAATGAAAATGTATAACGGTGCATTATTAGCAGAAATGTGCCATAAATGAGAATGCATAACGG
1 ATAAATGAAAATGTATAACGGTGCATTATTAGCAGAAATGTGCCATAAATGAAAATGCATAACGG
* * * * * *
8784905 TGCATTATTGGCAGAAAAGTGTCATAAATGAAAATGCATAACGGCGCATTATTTGTAGAAATATA
66 TGCATTATTGGCAGAAAAGTGCCATAAATGAAAATGCAGAACGACGCATTATTGGCAGAAAGATA
8784970 CCATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCCATAAATGAAAATGCATAAC
131 CCATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCCATAAATGAAAATGCATAAC
8785035 GGTGATTTATTTGCAGAAATGTGTT
196 GGTGATTTATTTGCAGAAATGTGTT
* *
8785060 ATAAATGAGAATGTATAACGGTGCATTTTTTA-CAGAAAATGTGCCATAAATGAAAATGCATAAC
1 ATAAATGAAAATGTATAACGGTGCA-TTATTAGCAG-AAATGTGCCATAAATGAAAATGCATAAC
* * * * *
8785124 GGTGCATTATTGGCATAAAGGTGCCATAAATGAAAATGCAGAACGATGTATTATTGGCAGAAAGG
64 GGTGCATTATTGGCAGAAAAGTGCCATAAATGAAAATGCAGAACGACGCATTATTGGCAGAAAGA
* * * * *
8785189 TGCCATAAATGAAAATGCATATCGGTGCATTATTTGCAGAAATGTGCCATAAATGAAAATGCATA
129 TACCATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCCATAAATGAAAATGCATA
8785254 ACGGT
194 ACGGT
8785259 ATAGTATTGG
Statistics
Matches: 178, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
220 27 0.15
221 151 0.85
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.27
Consensus pattern (220 bp):
ATAAATGAAAATGTATAACGGTGCATTATTAGCAGAAATGTGCCATAAATGAAAATGCATAACGG
TGCATTATTGGCAGAAAAGTGCCATAAATGAAAATGCAGAACGACGCATTATTGGCAGAAAGATA
CCATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCCATAAATGAAAATGCATAAC
GGTGATTTATTTGCAGAAATGTGTT
Found at i:8786242 original size:7 final size:7
Alignment explanation
Indices: 8786230--8786254 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8786220 TATTGGATTT
8786230 TAAACCC
1 TAAACCC
8786237 TAAACCC
1 TAAACCC
8786244 TAAACCC
1 TAAACCC
8786251 TAAA
1 TAAA
8786255 ATTGAACCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:8792443 original size:15 final size:16
Alignment explanation
Indices: 8792423--8792452 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8792413 GGTACGAAAT
8792423 AAAAAAACA-AAAAAA
1 AAAAAAACAGAAAAAA
8792438 AAAAAAACAGAAAAA
1 AAAAAAACAGAAAAA
8792453 TGACTAGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.90, C:0.07, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAAAAACAGAAAAAA
Found at i:8793150 original size:3 final size:3
Alignment explanation
Indices: 8793142--8793169 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8793132 TAATGTTTAA
8793142 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8793170 TGATTTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8800221 original size:29 final size:29
Alignment explanation
Indices: 8800188--8800247 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
8800178 TTTGAAAAGC
8800188 TTGTTATCAATTAACAATTAAATGTAATA
1 TTGTTATCAATTAACAATTAAATGTAATA
8800217 TTGTTATCAATTAACAATTAAATGTAATA
1 TTGTTATCAATTAACAATTAAATGTAATA
8800246 TT
1 TT
8800248 CTAACTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (29 bp):
TTGTTATCAATTAACAATTAAATGTAATA
Found at i:8802749 original size:23 final size:22
Alignment explanation
Indices: 8802723--8802779 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
8802713 GTTATACGCG
*
8802723 GTCCTTCGGGACAATTCTACGTA
1 GTCCTTCGGGACAATAC-ACGTA
* * *
8802746 GTCCTTCGGAAC-ATACATGTG
1 GTCCTTCGGGACAATACACGTA
8802767 GTCCTTCGGGACA
1 GTCCTTCGGGACA
8802780 CTCTATATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 14 0.50
22 3 0.11
23 11 0.39
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (22 bp):
GTCCTTCGGGACAATACACGTA
Found at i:8803025 original size:23 final size:23
Alignment explanation
Indices: 8802994--8803042 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
8802984 ATTCAGGTAA
8802994 GTTAGGAAAGTAGGTAACTGCAT
1 GTTAGGAAAGTAGGTAACTGCAT
* * *
8803017 GTTATGAAAGTATGTAACTGTAT
1 GTTAGGAAAGTAGGTAACTGCAT
8803040 GTT
1 GTT
8803043 TCATTAGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.35
Consensus pattern (23 bp):
GTTAGGAAAGTAGGTAACTGCAT
Found at i:8803676 original size:30 final size:29
Alignment explanation
Indices: 8803642--8803728 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 29
8803632 GGTTTTCTGG
*
8803642 AAAATAATTTACGTTAAATGAATTACCTAA
1 AAAATATTTTAC-TTAAATGAATTACCTAA
*
8803672 AAAATTATTTTACTTAAAATGAATTACCTGA
1 AAAA-TATTTTACTT-AAATGAATTACCTAA
* * *
8803703 AAATTGTTTTACATAAAATGAATTAC
1 AAAATATTTTAC-TTAAATGAATTAC
8803729 TTTTTCTAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
30 24 0.49
31 25 0.51
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (29 bp):
AAAATATTTTACTTAAATGAATTACCTAA
Found at i:8803684 original size:31 final size:29
Alignment explanation
Indices: 8803649--8803728 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 29
8803639 TGGAAAATAA
8803649 TTTACGTTAAATGAATTACCTAAAAAATTAT
1 TTTAC-TTAAATGAATTACCT-AAAAATTAT
* *
8803680 TTTACTTAAAATGAATTACCTGAAAATTGT
1 TTTACTT-AAATGAATTACCTAAAAATTAT
*
8803710 TTTACATAAAATGAATTAC
1 TTTAC-TTAAATGAATTAC
8803729 TTTTTCTAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
30 25 0.57
31 19 0.43
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (29 bp):
TTTACTTAAATGAATTACCTAAAAATTAT
Found at i:8803872 original size:31 final size:30
Alignment explanation
Indices: 8803836--8803897 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
8803826 GAAAATGATA
* *
8803836 TATGTAAATTGAATTACCTGAAAATTAATTT
1 TATGTAAAATGAATTA-CTGAAAAATAATTT
*
8803867 TATGTAAAATGAATTATTGAAAAATAATTT
1 TATGTAAAATGAATTACTGAAAAATAATTT
8803897 T
1 T
8803898 CAGAAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (30 bp):
TATGTAAAATGAATTACTGAAAAATAATTT
Found at i:8804628 original size:36 final size:38
Alignment explanation
Indices: 8804567--8804647 Score: 121
Period size: 36 Copynumber: 2.2 Consensus size: 38
8804557 TACTATATTC
8804567 TATTTAATTTTTTGTTAGTATTTTATTTAATTATTGTAT
1 TATTTAA-TTTTTGTTAGTATTTTATTTAATTATTGTAT
*
8804606 TATTTAA-TTTT-TTAGTATTTTATTTAATTATTTTAT
1 TATTTAATTTTTGTTAGTATTTTATTTAATTATTGTAT
*
8804642 TTTTTA
1 TATTTA
8804648 CAATTATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
36 29 0.73
37 4 0.10
39 7 0.17
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (38 bp):
TATTTAATTTTTGTTAGTATTTTATTTAATTATTGTAT
Found at i:8804647 original size:20 final size:20
Alignment explanation
Indices: 8804562--8804640 Score: 76
Period size: 20 Copynumber: 4.0 Consensus size: 20
8804552 AGGTATACTA
*
8804562 TATTCTATTTAATTTTTTGTTAG
1 TATTTTATTTAA--TTTT-TTAG
*
8804585 TATTTTATTTAA-TTATT-G
1 TATTTTATTTAATTTTTTAG
8804603 TA--TTATTTAATTTTTTAG
1 TATTTTATTTAATTTTTTAG
8804621 TATTTTATTTAATTATTTTA
1 TATTTTATTTAATT-TTTTA
8804641 TTTTTTACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
16 8 0.17
17 4 0.08
18 6 0.12
19 2 0.04
20 12 0.25
21 5 0.10
23 11 0.23
ACGTcount: A:0.27, C:0.01, G:0.05, T:0.67
Consensus pattern (20 bp):
TATTTTATTTAATTTTTTAG
Found at i:8805054 original size:20 final size:20
Alignment explanation
Indices: 8805031--8805089 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
8805021 CGGAGAGTGA
8805031 ACGATTACGCTGGAGGATGC
1 ACGATTACGCTGGAGGATGC
8805051 ACGATTACGCTGGAGGATGC
1 ACGATTACGCTGGAGGATGC
8805071 ACGATTACGCTGGAGGATG
1 ACGATTACGCTGGAGGATG
8805090 TTTTCATGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.25, C:0.19, G:0.36, T:0.20
Consensus pattern (20 bp):
ACGATTACGCTGGAGGATGC
Found at i:8813186 original size:30 final size:30
Alignment explanation
Indices: 8813152--8813229 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
8813142 GGATTATAGG
*
8813152 GTGATGTTTACGGGTTGA-AAGATTTGTTGT
1 GTGATGTTTACGGGTTGAGAAGA-TTGCTGT
*
8813182 GTGAT-TTTTCGGGTTGAGAAGATTGCTGT
1 GTGATGTTTACGGGTTGAGAAGATTGCTGT
* *
8813211 G-AATGTTTATGGGTTGAGA
1 GTGATGTTTACGGGTTGAGA
8813230 GCGTATTTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 2 0.05
29 30 0.73
30 9 0.22
ACGTcount: A:0.21, C:0.04, G:0.35, T:0.41
Consensus pattern (30 bp):
GTGATGTTTACGGGTTGAGAAGATTGCTGT
Found at i:8815424 original size:13 final size:13
Alignment explanation
Indices: 8815392--8815429 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
8815382 AAAAAAGAAA
8815392 ATAAATAA-AAAT
1 ATAAATAATAAAT
8815404 AT-AATAATAAAT
1 ATAAATAATAAAT
8815416 ATAAATAATAAAT
1 ATAAATAATAAAT
8815429 A
1 A
8815430 ATCCAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 5 0.21
12 8 0.33
13 11 0.46
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATAAATAATAAAT
Found at i:8815426 original size:7 final size:7
Alignment explanation
Indices: 8815391--8815431 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
8815381 AAAAAAAGAA
8815391 AATAAAT
1 AATAAAT
8815398 AA-AAAT
1 AATAAAT
8815404 -AT-AAT
1 AATAAAT
8815409 AATAAAT
1 AATAAAT
8815416 -ATAAAT
1 AATAAAT
8815422 AATAAAT
1 AATAAAT
8815429 AAT
1 AAT
8815432 CCAATATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
5 4 0.13
6 12 0.40
7 14 0.47
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATAAAT
Found at i:8815530 original size:40 final size:37
Alignment explanation
Indices: 8815484--8815557 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 37
8815474 CTATAATATA
* *
8815484 TTTTCAAAAGTGTTTTCAAAAACTATATATTATATATAGG
1 TTTTCAAAA-TATTTT-AAAAACTATAT-GTATATATAGG
*
8815524 TTTTCAAAATATTTTTAAAACTATATGTATATAT
1 TTTTCAAAATATTTTAAAAACTATATGTATATAT
8815558 TTTCAAAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 7 0.23
38 10 0.32
39 5 0.16
40 9 0.29
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.46
Consensus pattern (37 bp):
TTTTCAAAATATTTTAAAAACTATATGTATATATAGG
Found at i:8815557 original size:22 final size:24
Alignment explanation
Indices: 8815532--8815581 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
8815522 GGTTTTCAAA
*
8815532 ATATTTT-TAAAACTATAT-GTAT
1 ATATTTTCAAAAACTATATAGTAT
*
8815554 ATATTTTCAAAAACTATATATTAT
1 ATATTTTCAAAAACTATATAGTAT
8815578 ATAT
1 ATAT
8815582 ATATTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 10 0.42
24 7 0.29
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATTTTCAAAAACTATATAGTAT
Found at i:8815584 original size:11 final size:11
Alignment explanation
Indices: 8815568--8815594 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8815558 TTTCAAAAAC
8815568 TATATATTATA
1 TATATATTATA
8815579 TATATATTATA
1 TATATATTATA
8815590 TATAT
1 TATAT
8815595 GTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TATATATTATA
Found at i:8815600 original size:61 final size:63
Alignment explanation
Indices: 8815496--8815623 Score: 172
Period size: 61 Copynumber: 2.1 Consensus size: 63
8815486 TTCAAAAGTG
* *
8815496 TTTTCAAAAACTATATATTATATATAGGTTTTCAAAATATTTTT-AAAACTATAT-GTATATA
1 TTTTCAAAAACTATATATTATATATAGATTATCAAAATATTTTTAAAAACTATATAGTATATA
* * * *
8815557 TTTTCAAAAACTATATATTATATATATATTAT-ATATATGTTTTTAAAAACTATATATTATATA
1 TTTTCAAAAACTATATATTATATATAGATTATCA-AAATATTTTTAAAAACTATATAGTATATA
8815620 TTTT
1 TTTT
8815624 TTTTCAAAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
60 1 0.02
61 37 0.64
62 10 0.17
63 10 0.17
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.49
Consensus pattern (63 bp):
TTTTCAAAAACTATATATTATATATAGATTATCAAAATATTTTTAAAAACTATATAGTATATA
Found at i:8815627 original size:28 final size:28
Alignment explanation
Indices: 8815579--8815697 Score: 94
Period size: 28 Copynumber: 3.9 Consensus size: 28
8815569 ATATATTATA
*
8815579 TATATATTATATATATGTTTTTAAAAAC
1 TATATATTATATATATGTTTTCAAAAAC
* * *
8815607 TATATATTATATATTTTTTTTCAAAATATTTT
1 TATATATTATATATATGTTTTCAAAA-A---C
* * *
8815639 TGAAAACTATATATTATATATATTTTCAAGAAC
1 T--ATA-TAT-TA-TATATATGTTTTCAAAAAC
8815672 TATATATTATATATATGTTTTCAAAA
1 TATATATTATATATATGTTTTCAAAA
8815698 TATTTTTTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
28 38 0.54
29 3 0.04
30 3 0.04
31 2 0.03
32 1 0.01
33 1 0.01
34 2 0.03
35 3 0.04
36 3 0.04
37 14 0.20
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.50
Consensus pattern (28 bp):
TATATATTATATATATGTTTTCAAAAAC
Found at i:8815639 original size:39 final size:39
Alignment explanation
Indices: 8815554--8815664 Score: 143
Period size: 39 Copynumber: 2.8 Consensus size: 39
8815544 CTATATGTAT
* * *
8815554 ATATTTTCAAAAACTATATATTATATATATATTATATAT
1 ATATTTTTAAAAACTATATATTATATATATTTTATATAA
* * *
8815593 ATGTTTTTAAAAACTATATATTATATATTTTTTTTCA-AA
1 ATATTTTTAAAAACTATATATTATATATATTTTAT-ATAA
*
8815632 ATATTTTTGAAAACTATATATTATATATATTTT
1 ATATTTTTAAAAACTATATATTATATATATTTT
8815665 CAAGAACTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 61 0.98
40 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (39 bp):
ATATTTTTAAAAACTATATATTATATATATTTTATATAA
Found at i:8815673 original size:65 final size:66
Alignment explanation
Indices: 8815579--8815735 Score: 217
Period size: 65 Copynumber: 2.4 Consensus size: 66
8815569 ATATATTATA
* * * *
8815579 TATATATTATATATATGTTTTTAAAAACTATATATTATATATTTTTTTTCAAAATA-TTTTTGAA
1 TATATATTATATATA--TTTTCAAAAACTATATATTATATATATGTTTTCAAAATATTTTTTAAA
8815643 AAC
64 AAC
*
8815646 TATATATTATATATATTTTCAAGAACTATATATTATATATATGTTTTCAAAATATTTTTTAAAAA
1 TATATATTATATATATTTTCAAAAACTATATATTATATATATGTTTTCAAAATATTTTTTAAAAA
*
8815711 T
66 C
* *
8815712 TTTATATTATAAATATTTTCAAAA
1 TATATATTATATATATTTTCAAAA
8815736 TGTTTTAAAA
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
65 35 0.44
66 30 0.38
67 15 0.19
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (66 bp):
TATATATTATATATATTTTCAAAAACTATATATTATATATATGTTTTCAAAATATTTTTTAAAAA
C
Found at i:8817452 original size:16 final size:16
Alignment explanation
Indices: 8817431--8817463 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8817421 ACCTCATGTA
8817431 AAATTATATCTCTTGT
1 AAATTATATCTCTTGT
8817447 AAATTATATCTCTTGT
1 AAATTATATCTCTTGT
8817463 A
1 A
8817464 TATGATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
AAATTATATCTCTTGT
Found at i:8829967 original size:54 final size:54
Alignment explanation
Indices: 8829885--8830286 Score: 563
Period size: 54 Copynumber: 7.4 Consensus size: 54
8829875 CTATGTGTAC
* * *
8829885 TATCGGCACTAAGTGTACAACCCACAAAATTCATAATATGTTTATTAACGACCG
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * *
8829939 TATCGACACTAAGTGTGCAGCCCACAAAATTCATAATATGTTTATGAATGACCA
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * * *
8829993 TATTGGCACTAAGTGTGCAACCTACATAATTCATAATATGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
**
8830047 TATCGACACTAAGTGTGCAACCCACGTAATTCATAATATGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* *** * *
8830101 TATCGGCACTAAGTGTGCAACCCATGGAATTCATAATATGTTTATGAATGACCC
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
*
8830155 TATCGGA-ACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAATGACCG
1 TATC-GACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * *
8830209 TATCAACACTAAGTGTGCAACCTACAGAATTCATAATATGTTTATGAACGACCG
1 TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
* * *
8830263 TATCGGCACTACGTGTGCACCCCA
1 TATCGACACTAAGTGTGCAACCCA
8830287 AAGAACTTAT
Statistics
Matches: 310, Mismatches: 36, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.00
54 308 0.99
55 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (54 bp):
TATCGACACTAAGTGTGCAACCCACAAAATTCATAATATGTTTATGAACGACCG
Found at i:8835416 original size:29 final size:29
Alignment explanation
Indices: 8835374--8835450 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
8835364 AGTCCATTAT
*
8835374 TCTTTTACTCAACAGTGTTTAACCTTTCA
1 TCTTTTACTCAACAGTATTTAACCTTTCA
*
8835403 TCTTTTACTCAACAGTATTTTACCTTTCA
1 TCTTTTACTCAACAGTATTTAACCTTTCA
* *
8835432 TATTTTACTCAACAATATT
1 TCTTTTACTCAACAGTATT
8835451 AACTGTTCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.22, G:0.04, T:0.47
Consensus pattern (29 bp):
TCTTTTACTCAACAGTATTTAACCTTTCA
Found at i:8835747 original size:34 final size:34
Alignment explanation
Indices: 8835709--8835841 Score: 95
Period size: 34 Copynumber: 3.6 Consensus size: 34
8835699 TATCATGCCA
8835709 ATAATGCACCCATATGCATTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* * **
8835743 ATAATGAACCCATATACATTTCAGCTATGACATTCTTTCATGCCA
1 ATAATGCACCCATATGCA-TT-A--T-T--C--T-TTT-ATGCTG
* *
8835788 ATAATGCACCTACATGCATTATTCTTTTATGCTG
1 ATAATGCACCCATATGCATTATTCTTTTATGCTG
* *
8835822 ATAATGCATCTATATGCATT
1 ATAATGCACCCATATGCATT
8835842 TCAGCTATGA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
34 38 0.50
35 5 0.07
36 2 0.03
38 2 0.03
39 1 0.01
40 1 0.01
41 2 0.03
43 2 0.03
44 5 0.07
45 18 0.24
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (34 bp):
ATAATGCACCCATATGCATTATTCTTTTATGCTG
Done.