Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 43 of 62
Found at i:9342522 original size:22 final size:21
Alignment explanation
Indices: 9342473--9342529 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
9342463 TTGGCCCTCT
*
9342473 GGTATCGATACCCCTACTTAT
1 GGTATCGATACCCCTACTTAG
9342494 GGTATCGATACTACCCTA-TTAG
1 GGTATCGATAC--CCCTACTTAG
9342516 GGTATCGATACCCC
1 GGTATCGATACCCC
9342530 CCTCATGTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 3 0.09
21 11 0.33
22 14 0.42
23 5 0.15
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (21 bp):
GGTATCGATACCCCTACTTAG
Found at i:9342612 original size:21 final size:21
Alignment explanation
Indices: 9342570--9342614 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
9342560 ATGTTTACTA
*
9342570 GTATCGATACCCTTACCGTAG
1 GTATCGATACCCTTACAGTAG
*
9342591 GTATCGATACCACTT-CATTAG
1 GTATCGATACC-CTTACAGTAG
9342612 GTA
1 GTA
9342615 CCAATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (21 bp):
GTATCGATACCCTTACAGTAG
Found at i:9344753 original size:11 final size:12
Alignment explanation
Indices: 9344698--9344760 Score: 53
Period size: 12 Copynumber: 5.3 Consensus size: 12
9344688 TGTACATAAG
9344698 ATTTATAATATT
1 ATTTATAATATT
9344710 ATTTAATACATA-T
1 ATTT-ATA-ATATT
* *
9344723 ATGATATAAAATT
1 AT-TTATAATATT
9344736 A--TATAAT-TT
1 ATTTATAATATT
9344745 ATTTATAATATT
1 ATTTATAATATT
9344757 ATTT
1 ATTT
9344761 TTTTATAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
9 3 0.07
10 5 0.12
11 6 0.15
12 12 0.29
13 11 0.27
14 4 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (12 bp):
ATTTATAATATT
Found at i:9348510 original size:31 final size:31
Alignment explanation
Indices: 9348475--9348545 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
9348465 CAAGTTCGAC
* * *
9348475 AAATTTAATGATTAGTTTATAGTAATTTGAT
1 AAATTTAATGATTAATTTATAATAATTTAAT
* *
9348506 AAATTTATTGATTAATTTTTAATAATTTAAT
1 AAATTTAATGATTAATTTATAATAATTTAAT
9348537 AAATTTAAT
1 AAATTTAAT
9348546 AATGATGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (31 bp):
AAATTTAATGATTAATTTATAATAATTTAAT
Found at i:9351748 original size:5 final size:5
Alignment explanation
Indices: 9351713--9351952 Score: 381
Period size: 5 Copynumber: 49.2 Consensus size: 5
9351703 AATATTTGTA
*
9351713 ATAA- ATAA- ATAAT ATTAT A-AAT A-ATAT ATAAT ATAAT ATAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAAT ATAAT ATAAT
9351759 ATAAT ATAAT ATAATAT ATAAT ATAAT ATAAT AT-A- ATAAT ATAAT ATAAT
1 ATAAT ATAAT AT-A-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
9351809 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
9351858 AT-AT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
9351907 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT A
9351953 CGTGCTATAT
Statistics
Matches: 224, Mismatches: 2, Indels: 19
0.91 0.01 0.08
Matches are distributed among these distances:
3 2 0.01
4 26 0.12
5 189 0.84
6 3 0.01
7 4 0.02
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:9352013 original size:20 final size:20
Alignment explanation
Indices: 9351980--9352037 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
9351970 TAAAATCTAT
*
9351980 AAAACATATGTTATATTTTCA
1 AAAAC-TATATTATATTTTCA
9352001 AAAACTATATTATATGTTTTCA
1 AAAACTATATTATA--TTTTCA
*
9352023 AAAATTATA-TATATT
1 AAAACTATATTATATT
9352038 ATATATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 2 0.06
20 8 0.24
21 9 0.27
22 14 0.42
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (20 bp):
AAAACTATATTATATTTTCA
Found at i:9352035 original size:21 final size:22
Alignment explanation
Indices: 9351995--9352036 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9351985 ATATGTTATA
9351995 TTTTCAAAAACTATATTATATG
1 TTTTCAAAAACTATATTATATG
*
9352017 TTTTCAAAAATTATA-TATAT
1 TTTTCAAAAACTATATTATAT
9352037 TATATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTCAAAAACTATATTATATG
Found at i:9352074 original size:33 final size:33
Alignment explanation
Indices: 9352037--9352116 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
9352027 TTATATATAT
9352037 TATATATTTTTTCAAAA-ACTGTTTTAAAAACTA
1 TATATATTTTTTCAAAATA-TGTTTTAAAAACTA
* * *
9352070 TATATGTGTTTTCAAAATATGTTTTCAAAACTA
1 TATATATTTTTTCAAAATATGTTTTAAAAACTA
9352103 TATTATATTCTTTT
1 TA-TATATT-TTTT
9352117 TTTAAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
33 30 0.77
34 5 0.13
35 4 0.10
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (33 bp):
TATATATTTTTTCAAAATATGTTTTAAAAACTA
Found at i:9352178 original size:36 final size:37
Alignment explanation
Indices: 9352128--9352227 Score: 132
Period size: 36 Copynumber: 2.8 Consensus size: 37
9352118 TTAAAAAAAA
*
9352128 AAAACTATCTATTATATGTTTTCAAAAACCATTTTTC
1 AAAACTATATATTATATGTTTTCAAAAACCATTTTTC
*** *
9352165 AAAA-TATATATTATATGTTTTC-AAAATTGTTTTTT
1 AAAACTATATATTATATGTTTTCAAAAACCATTTTTC
*
9352200 AAAAGTATATATTATATGTTTTCAAAAA
1 AAAACTATATATTATATGTTTTCAAAAA
9352228 TATATTCAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 13 0.23
36 35 0.62
37 8 0.14
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (37 bp):
AAAACTATATATTATATGTTTTCAAAAACCATTTTTC
Found at i:9356869 original size:58 final size:58
Alignment explanation
Indices: 9356779--9356894 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
9356769 ATGAGAAGAA
*
9356779 AGAATTTTCAGTTATATTATCCACTAAAGTGTTTATGTGTAGCAAAGGGAAGTTATCT
1 AGAATTTTCAGTTATATTATCCACTAAAGTGTTTATATGTAGCAAAGGGAAGTTATCT
9356837 AGAATTTTCAGTTATATTATCCACTAAAGTGTTTATATGTAGCAAAGGGAAGTTATCT
1 AGAATTTTCAGTTATATTATCCACTAAAGTGTTTATATGTAGCAAAGGGAAGTTATCT
9356895 TTAGGACTTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (58 bp):
AGAATTTTCAGTTATATTATCCACTAAAGTGTTTATATGTAGCAAAGGGAAGTTATCT
Found at i:9360566 original size:12 final size:12
Alignment explanation
Indices: 9360545--9360597 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
9360535 ATTACGTATT
9360545 TATT-TTATGTA
1 TATTATTATGTA
9360556 TATTATTATGTA
1 TATTATTATGTA
*
9360568 T-TTATTTTACGTA
1 TATTA--TTATGTA
*
9360581 TATTATTATATA
1 TATTATTATGTA
9360593 TATTA
1 TATTA
9360598 CTTTATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
11 7 0.20
12 18 0.51
13 7 0.20
14 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (12 bp):
TATTATTATGTA
Found at i:9360589 original size:25 final size:25
Alignment explanation
Indices: 9360533--9360589 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
9360523 TATGTTTTAT
* *
9360533 TTATTACGTATTTATTTTATGTATA
1 TTATTATGTATTTATTTTACGTATA
9360558 TTATTATGTATTTATTTTACGTATA
1 TTATTATGTATTTATTTTACGTATA
9360583 TTATTAT
1 TTATTAT
9360590 ATATATTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (25 bp):
TTATTATGTATTTATTTTACGTATA
Found at i:9360607 original size:25 final size:25
Alignment explanation
Indices: 9360548--9360624 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 25
9360538 ACGTATTTAT
* *
9360548 TTTATGTATATTATTATGTAT-TTAT
1 TTTAT-TATATTATTATATATATTAC
*
9360573 TTTACGTATATTATTATATATATTAC
1 TTTA-TTATATTATTATATATATTAC
*
9360599 TTTATTATATATATT-TATATAATAC
1 TTTATTATAT-TATTATATATATTAC
9360624 T
1 T
9360625 ACATATATTG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
25 33 0.75
26 11 0.25
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (25 bp):
TTTATTATATTATTATATATATTAC
Found at i:9360609 original size:27 final size:26
Alignment explanation
Indices: 9360554--9360633 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 26
9360544 TTATTTTATG
* * *
9360554 TATATTATTATGTAT-TTATTTTACG
1 TATATTATTATATATATTACTTTACA
*
9360579 TATATTATTATATATATTACTTTA-T
1 TATATTATTATATATATTACTTTACA
*
9360604 TATATATATT-TATATAATAC--TACA
1 TATAT-TATTATATATATTACTTTACA
9360628 TATATT
1 TATATT
9360634 GTATTGTGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
23 3 0.06
24 5 0.11
25 28 0.60
26 11 0.23
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (26 bp):
TATATTATTATATATATTACTTTACA
Found at i:9361887 original size:139 final size:139
Alignment explanation
Indices: 9361607--9362252 Score: 1003
Period size: 139 Copynumber: 4.7 Consensus size: 139
9361597 GGGAAAACCA
* *
9361607 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAGGGAGAAGAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTCAT
*
9361672 AATGAG-AGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCATCAACACCTC
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
*
9361736 ACTCGAGAG
131 ACTCGAGGG
* *
9361745 ATCAACATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGACGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTCAT
*
9361810 AATGAGAAGAACTTGTTCCACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
9361875 ACTCGAGGG
131 ACTCGAGGG
*
9361884 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATGAAGGAGAAGAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTCAT
* * * *
9361949 AATTAGAAGAACTTGTTCAACCTTAGCTCGATTCGTCACATATGGAGTTGAATCAGCAACGCCTC
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
9362014 ACTCGAGGG
131 ACTCGAGGG
* * * * * *
9362023 ATCAACCTTTCTAGTGGAGAGTTCACAATGAGAAGAACTTATCTGATAAAGGAGAAGAAGTTCAT
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTCAT
* * * **
9362088 AATGAGAAGAACTTGTTCAATCTTAGCTCAATTCATCACATATGGAATTGAATCAACAA-TGC-C
66 AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
9362151 ACTCGAGGG
131 ACTCGAGGG
* * * * *
9362160 ATCAACCTTTCTAGTTGAGAGTTCATAATGAGAAGAACTTATCTGAT-AAGGGAGAAGAAGTTCA
1 ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAA-GGAGAAGAAGTTCA
9362224 TAATGAGAAGAACTTGTTCAACCTTAGCT
65 TAATGAGAAGAACTTGTTCAACCTTAGCT
9362253 TGTTTCCATC
Statistics
Matches: 473, Mismatches: 33, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
136 2 0.00
137 97 0.21
138 68 0.14
139 306 0.65
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (139 bp):
ATCAACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATGAAGGAGAAGAAGTTCAT
AATGAGAAGAACTTGTTCAACCTTAGCTCGATTCATCACATATGGAGTTGAATCAACAACACCTC
ACTCGAGGG
Found at i:9363946 original size:12 final size:12
Alignment explanation
Indices: 9363925--9363977 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
9363915 ATTACGTATT
9363925 TATT-TTATGTA
1 TATTATTATGTA
9363936 TATTATTATGTA
1 TATTATTATGTA
*
9363948 T-TTATTTTACGTA
1 TATTA--TTATGTA
*
9363961 TATTATTATATA
1 TATTATTATGTA
9363973 TATTA
1 TATTA
9363978 CTTTATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
11 7 0.20
12 18 0.51
13 7 0.20
14 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (12 bp):
TATTATTATGTA
Found at i:9363969 original size:25 final size:25
Alignment explanation
Indices: 9363914--9363969 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
9363904 ATGTTTTATG
* *
9363914 TATTACGTATTTATTTTATGTATAT
1 TATTATGTATTTATTTTACGTATAT
9363939 TATTATGTATTTATTTTACGTATAT
1 TATTATGTATTTATTTTACGTATAT
9363964 TATTAT
1 TATTAT
9363970 ATATATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.29, C:0.04, G:0.07, T:0.61
Consensus pattern (25 bp):
TATTATGTATTTATTTTACGTATAT
Found at i:9363987 original size:25 final size:25
Alignment explanation
Indices: 9363928--9363999 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 25
9363918 ACGTATTTAT
* *
9363928 TTTATGTATATTATTATGTAT-TTAT
1 TTTAT-TATATTATTATATATATTAC
*
9363953 TTTACGTATATTATTATATATATTAC
1 TTTA-TTATATTATTATATATATTAC
9363979 TTTATTATATATATT-TATATA
1 TTTATTATAT-TATTATATATA
9364000 AAACTACATG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 29 0.73
26 11 0.28
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (25 bp):
TTTATTATATTATTATATATATTAC
Found at i:9373338 original size:41 final size:41
Alignment explanation
Indices: 9373293--9373399 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 41
9373283 TACTCCCTAG
* *
9373293 TCTATAGCGGCGTTTATATAAAAAC-GTAGCAAAATATTATA
1 TCTATTGCGGCGTTTATATAAAAACGGCA-CAAAATATTATA
* * *
9373334 TCTATTGCGGCATTTGTTATAAAAAACGGCACAAAATATTATC
1 TCTATTGCGGCGTTT-ATAT-AAAAACGGCACAAAATATTATA
*
9373377 TCTATTGCGGCGTTTGTATAAAA
1 TCTATTGCGGCGTTTATATAAAA
9373400 CGCCACTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 17 0.30
42 6 0.11
43 31 0.55
44 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (41 bp):
TCTATTGCGGCGTTTATATAAAAACGGCACAAAATATTATA
Found at i:9374708 original size:22 final size:22
Alignment explanation
Indices: 9374682--9374723 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
9374672 TTTCAAAAGG
9374682 TATTA-TTTTCCTATTCGAAAAC
1 TATTACTTTT-CTATTCGAAAAC
9374704 TATTACTTTTCTATTCGAAA
1 TATTACTTTTCTATTCGAAA
9374724 GCATAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.48
Consensus pattern (22 bp):
TATTACTTTTCTATTCGAAAAC
Found at i:9385319 original size:17 final size:17
Alignment explanation
Indices: 9385286--9385335 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
9385276 TAAGAGTTAA
* *
9385286 TTTAATAAATAAACTAG
1 TTTAATGAATGAACTAG
*
9385303 TTTGATGAATGAACTAG
1 TTTAATGAATGAACTAG
*
9385320 TTTAATTAATGAACTA
1 TTTAATGAATGAACTA
9385336 CTTCCCTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (17 bp):
TTTAATGAATGAACTAG
Found at i:9387955 original size:54 final size:55
Alignment explanation
Indices: 9387829--9387967 Score: 212
Period size: 55 Copynumber: 2.5 Consensus size: 55
9387819 GTGTAAAATA
* * *
9387829 TAAGAAATTCATACTAAAG-GTATGAATTTCTGTATGGGCACTTTGTGTGTAGAAC
1 TAAGAAATTCATACT-AAGTGTATGAATTTCTGTAGGGGCACTTTGGGTGCAGAAC
9387884 TAAGAAATTCATACTAAGTGTATGAATTTCTGTAGGGGCA-TTATGGGTGCA-AAC
1 TAAGAAATTCATACTAAGTGTATGAATTTCTGTAGGGGCACTT-TGGGTGCAGAAC
9387938 TAAGAAATTCATACTAAGTGTATGAATTTC
1 TAAGAAATTCATACTAAGTGTATGAATTTC
9387968 CATATGGGAA
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
54 38 0.48
55 41 0.52
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.34
Consensus pattern (55 bp):
TAAGAAATTCATACTAAGTGTATGAATTTCTGTAGGGGCACTTTGGGTGCAGAAC
Found at i:9388271 original size:81 final size:81
Alignment explanation
Indices: 9388174--9389049 Score: 1299
Period size: 81 Copynumber: 10.8 Consensus size: 81
9388164 TGTTCTAAAA
* * * * *
9388174 TAAAAGAATAATGGCCTAACTGTGCAATTAGTAGAAAAGTGTCAATTAGGCCTGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
9388239 GTTAAGTACCGTTGAG
66 GTTAAGTACCATTGAG
* *
9388255 TAAAAGAATAACGGCCTAATTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
9388320 GTTAAGTACCATTGAG
66 GTTAAGTACCATTGAG
* * * * *
9388336 TAAAAAAATAATGGCCTAATTGTGCAATTGGCAAAAAGGTGTCAATTATGCCAGTTAGATGAACA
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
9388401 GTTAAGTACCATTGAG
66 GTTAAGTACCATTGAG
* * *
9388417 TAAAATAATAATGGCCTAACTGTGTAATTGGTAGAAATGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
9388482 GTTAAGTACCGTTGAG
66 GTTAAGTACCATTGAG
* *
9388498 TAAAAGAATAACGGCCTAATTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
9388563 GTTAAGTACCATTGAG
66 GTTAAGTACCATTGAG
* *
9388579 TAAAA-AACTAATGGCCTAATTGTGCAATTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAC
1 TAAAAGAA-TAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAAC
*
9388643 AGTTAAGTACCATTGAG
65 GGTTAAGTACCATTGAG
* * *
9388660 TAAAAGAATAATGGCCTAACTGTGTAATTGGTAGAAATGTGTAAATTATGCCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
9388725 GTTAAGTA-CAGTTGAG
66 GTTAAGTACCA-TTGAG
** * *
9388741 TAAAAGAATAATGGCCTAACTGTGCAATTGATAGAAAGGTGTCAATTATGCCAGTTAGATGAACA
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
9388806 GTTAAGTACCGTTGAG
66 GTTAAGTACCATTGAG
* * * *
9388822 TAAAAGAATAATGGCCTAACTGTTCAATTGGCAGAAAGGTTTCAATTATG-CAATTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
*
9388886 GTTAAGTACCGTTGAG
66 GTTAAGTACCATTGAG
* * * *
9388902 TAAAATAATAATGGACTAACTATGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACA
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
* *
9388967 ATTAAGTACAATTGAG
66 GTTAAGTACCATTGAG
* * * * *
9388983 TAAAAAAATAAGGGCCTAACTGTGTAATTGGCAGAAAGGTGTCAATTATGTCAGTTAGATGAACG
1 TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
9389048 GT
66 GT
9389050 AAATATCGTT
Statistics
Matches: 722, Mismatches: 68, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
80 76 0.11
81 643 0.89
82 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (81 bp):
TAAAAGAATAATGGCCTAACTGTGCAATTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG
GTTAAGTACCATTGAG
Found at i:9389186 original size:45 final size:45
Alignment explanation
Indices: 9389135--9389253 Score: 141
Period size: 45 Copynumber: 2.6 Consensus size: 45
9389125 ACAGAACATA
* *
9389135 AAAGGCATGAAAAGATGCCATAAATGAAATATAT-AATCGTGTATC
1 AAAGGCATGAAAGGATGCCATAAATGAAATATATAAAT-ATGTATC
* * * * * *
9389180 ATAGGCAAGAAAGGATGCCAGAAGTAAAATGTATAAATATGTATC
1 AAAGGCATGAAAGGATGCCATAAATGAAATATATAAATATGTATC
*
9389225 AAAGGTATGAAAGGATGCCATAAATGAAA
1 AAAGGCATGAAAGGATGCCATAAATGAAA
9389254 GGATGACATA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
45 56 0.95
46 3 0.05
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.22
Consensus pattern (45 bp):
AAAGGCATGAAAGGATGCCATAAATGAAATATATAAATATGTATC
Found at i:9389253 original size:17 final size:17
Alignment explanation
Indices: 9389231--9389270 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
9389221 TATCAAAGGT
*
9389231 ATGAAAGGATGCCATAA
1 ATGAAAGGATGACATAA
9389248 ATGAAAGGATGACATAA
1 ATGAAAGGATGACATAA
*
9389265 TTGAAA
1 ATGAAA
9389271 TGCATATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (17 bp):
ATGAAAGGATGACATAA
Found at i:9390148 original size:20 final size:20
Alignment explanation
Indices: 9390084--9390152 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
9390074 CAGTAGTCCA
* *
9390084 AAAGTTTCGATACTTTCA-T
1 AAAGTTTCAAAACTTTCATT
* * * *
9390103 ATAGTTTCGAAACTATC-TC
1 AAAGTTTCAAAACTTTCATT
9390122 AAGAGTTTCAAAACTTTCATT
1 AA-AGTTTCAAAACTTTCATT
9390143 AAAGTTTCAA
1 AAAGTTTCAA
9390153 TACTCTGGGT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
19 15 0.38
20 21 0.54
21 3 0.08
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (20 bp):
AAAGTTTCAAAACTTTCATT
Found at i:9404678 original size:81 final size:81
Alignment explanation
Indices: 9404586--9405064 Score: 651
Period size: 81 Copynumber: 5.9 Consensus size: 81
9404576 TCTTTCCTCT
* * *
9404586 AAAGGCATTTAGCCTTTCATCCAACATGCATGATTGACACCTTTCTGCCAAATGGACAGTTAGGC
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
9404651 ATTTAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * *
9404667 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCTTTCTATCAAATGCACAGTTAGAC
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
9404732 ATTTAATCTTTTACTC
66 ATTTAATCTTTTACTC
* * * * *
9404748 AAAGGCATTTAGCCTTTAATCTAACTTGCATGATTGACACATTTCTACCAAATGCATAGTTAGAC
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
*
9404813 ATTT-A-CTCTTACTC
66 ATTTAATCTTTTACTC
* * * *
9404827 AAAGGCATTTAGCCTTTCATCTAACTTTCATGATTGGA-AACTTTC-AGCCAAATGCACACTTAG
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATT-GACACCTTTCTA-CCAAATGCACAGTTAG
9404890 GCATTTAATCTTTTACTC
64 GCATTTAATCTTTTACTC
* * * ** * *
9404908 AAAGGCATTTAGCCTTTCATCCAAGTTTCATGATTGGCATGTTTCTATCAAATGCACAATTAGGC
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
*
9404973 ATTTAATATTTTACTC
66 ATTTAATCTTTTACTC
* * * *
9404989 ACAGACATTTAGCCTTTCATCCAACTTGCATGATTGATACCTTTCTTCCAAATGCACAGTTAGGC
1 AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
*
9405054 ATTTAGTCTTT
66 ATTTAATCTTT
9405065 CATTTTAAAA
Statistics
Matches: 350, Mismatches: 42, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.00
79 65 0.19
80 5 0.01
81 278 0.79
82 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (81 bp):
AAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGACACCTTTCTACCAAATGCACAGTTAGGC
ATTTAATCTTTTACTC
Found at i:9405017 original size:241 final size:241
Alignment explanation
Indices: 9404586--9405063 Score: 724
Period size: 241 Copynumber: 2.0 Consensus size: 241
9404576 TCTTTCCTCT
* * * *
9404586 AAAGGCATTTAGCCTTTCATCCAACATGCATGATTGACACCTTTCTGCCAAATGGACAGTTAGGC
1 AAAGGCATTTAGCCTTTCATCCAACATGCATGATTGACAACTTTCAGCCAAATGCACACTTAGGC
9404651 ATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCTTTCTATC
66 ATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCTTTCTATC
* * * *
9404716 AAATGCACAGTTAGACATTTAATCTTTTACTCAAAGGCATTTAGCCTTTAATCTAACTTGCATGA
131 AAATGCACAATTAGACATTTAATATTTTACTCAAAGACATTTAGCCTTTAATCCAACTTGCATGA
*
9404781 TTGACACATTTCTACCAAATGCATAGTTAGACATTTACTCTTACTC
196 TTGACACATTTCTACCAAATGCACAGTTAGACATTTACTCTTACTC
* * *
9404827 AAAGGCATTTAGCCTTTCATCTAACTTTCATGATTGGA-AACTTTCAGCCAAATGCACACTTAGG
1 AAAGGCATTTAGCCTTTCATCCAACATGCATGATT-GACAACTTTCAGCCAAATGCACACTTAGG
* * **
9404891 CATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAAGTTTCATGATTGGCATGTTTCTAT
65 CATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCTTTCTAT
* * *
9404956 CAAATGCACAATTAGGCATTTAATATTTTACTCACAGACATTTAGCCTTTCATCCAACTTGCATG
130 CAAATGCACAATTAGACATTTAATATTTTACTCAAAGACATTTAGCCTTTAATCCAACTTGCATG
* * * * *
9405021 ATTGATACCTTTCTTCCAAATGCACAGTTAGGCATTTAGTCTT
195 ATTGACACATTTCTACCAAATGCACAGTTAGACATTTACTCTT
9405064 TCATTTTAAA
Statistics
Matches: 212, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
241 210 0.99
242 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (241 bp):
AAAGGCATTTAGCCTTTCATCCAACATGCATGATTGACAACTTTCAGCCAAATGCACACTTAGGC
ATTTAATCTTTTACTCAAAGGCATTTAGCCTTTCATCCAACTTGCATGATTGGCACCTTTCTATC
AAATGCACAATTAGACATTTAATATTTTACTCAAAGACATTTAGCCTTTAATCCAACTTGCATGA
TTGACACATTTCTACCAAATGCACAGTTAGACATTTACTCTTACTC
Found at i:9407030 original size:81 final size:81
Alignment explanation
Indices: 9406929--9408312 Score: 1737
Period size: 81 Copynumber: 17.1 Consensus size: 81
9406919 ATTCCTTTAG
* * * * * * *
9406929 TCTTTTACCCAAAGGCATTTAGCCTTTCATCTAACTTGCATGATTGACACCTTTATGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9406994 TCAACTAGGCTATTAA
66 ACAACTAGGCCATTAA
* * * * * * * *
9407010 TCTATTACTCAAAGATATTTAACCTTTAATCTATCTAGCATAATTTAAACCTTTCTTTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* * * *
9407075 ACAGCAAGACCATTAG
66 ACAACTAGGCCATTAA
* * * * * *
9407091 TCTTTTACTCAAAGGTATTTAACCTTTTATCTAATTGGAATAATTGACAACTTTCTGCCAAATGA
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* ** *
9407156 ACAACTTGGATATTAT
66 ACAACTAGGCCATTAA
* *
9407172 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACATTTCTGTCATATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* * * *
9407237 ATAGCTAGGCTATTAG
66 ACAACTAGGCCATTAA
* *
9407253 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACTTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9407318 ACAACTAGGCTATT--
66 ACAACTAGGCCATTAA
* * * * * * *
9407332 TCTTTTACTCAAAGTTATTTAACCTTTTATCTAACTCGCATAATTGACACATTTTTGCCAAATGA
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9407397 AAAACTAGGCTATTAA
66 ACAACTAGGCCATTAA
* ** * * *
9407413 TATTTTACTCAAAGGTATTTAATTTTTCATCTAACTAGAATAATTGACACCTTTATGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9407478 ACAGCTAGGCCATTAG
66 ACAACTAGGCCATTAA
* * *
9407494 TCTTTTACTCGAAGATATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9407559 ACAACTAGGCTATTAA
66 ACAACTAGGCCATTAA
* * *
9407575 TATTTTACTCAAAGGTATTTAACCTTTAATCTAACTGGCATAATTGACACCTTTCTGCCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
**
9407640 ACAACTAGGATATTAA
66 ACAACTAGGCCATTAA
* *
9407656 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGTCATAATTGAAACCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9407721 ATAGCTAGGCCATTAA
66 ACAACTAGGCCATTAA
* * * *
9407737 TATTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTAACACATTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9407802 ACAACTAAGCCATTAA
66 ACAACTAGGCCATTAA
* ** * *
9407818 TCTTTTACTCAGAGGTATTTAACCTTTCATCTAACTGGCATAATTGACAAATTCCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* * * *
9407883 ATAGCCAGGGCATTAA
66 ACAACTAGGCCATTAA
* * *
9407899 TCTTTTACTCAAAGATATTTAACCTTTCATCTAACTAGCATAATTGAAACCTTTCTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
9407964 ACAACTAGGCCGTTAA
66 ACAACTAGGCCATTAA
* *
9407980 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACATCTTTCTATCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
**
9408045 ATGACTAGGCCATTAA
66 ACAACTAGGCCATTAA
** * *
9408061 AATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTAACACCTTTCTGTCAAATAC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
**
9408126 ACCGCTAGGCCATTAA
66 ACAACTAGGCCATTAA
* * * *
9408142 TCTTTTACTCAAAGGTATTTAACCTTTCATATAACTGGCATAATTGACGCATTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* * * **
9408207 ATAGCTTGGCCATTTG
66 ACAACTAGGCCATTAA
* * **
9408223 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATAATTGACACATTTCTACCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
* *
9408288 ACATCTAGGCTATTAA
66 ACAACTAGGCCATTAA
9408304 TCTTTTACT
1 TCTTTTACT
9408313 TTGGAATAGT
Statistics
Matches: 1119, Mismatches: 182, Indels: 4
0.86 0.14 0.00
Matches are distributed among these distances:
79 72 0.06
81 1047 0.94
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
ACAACTAGGCCATTAA
Found at i:9408701 original size:54 final size:55
Alignment explanation
Indices: 9408643--9408762 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 55
9408633 TCACCAACAC
* * * *
9408643 ATGATGAATTTTGTGG-GTTGCACACATTGTGCCTGTACGATTATTCATCAACTA
1 ATGATGAATTCTGTGGTGTTGCACACATCGTGCATGTAAGATTATTCATCAACTA
* * * **
9408697 ATGATGAATTCTGTGGTTTTGTACACATCGTGCATGTAAGGTTATTCATCATTTA
1 ATGATGAATTCTGTGGTGTTGCACACATCGTGCATGTAAGATTATTCATCAACTA
9408752 ATGATGAATTC
1 ATGATGAATTC
9408763 CGTAGATTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
54 15 0.27
55 41 0.73
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (55 bp):
ATGATGAATTCTGTGGTGTTGCACACATCGTGCATGTAAGATTATTCATCAACTA
Found at i:9408778 original size:55 final size:55
Alignment explanation
Indices: 9408663--9408779 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 55
9408653 TTGTGGGTTG
* * * * * * *
9408663 CACACATTGTGCCTGTACGATTATTCATCAACTAATGATGAATTCTGTGGTTTTG
1 CACACATCGTGCATGTAAGATTATTCATCAACTAATGATGAATTCCGTAGATTTA
* * **
9408718 TACACATCGTGCATGTAAGGTTATTCATCATTTAATGATGAATTCCGTAGATTTA
1 CACACATCGTGCATGTAAGATTATTCATCAACTAATGATGAATTCCGTAGATTTA
9408773 CACACAT
1 CACACAT
9408780 AGTGTATGCA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (55 bp):
CACACATCGTGCATGTAAGATTATTCATCAACTAATGATGAATTCCGTAGATTTA
Found at i:9421256 original size:31 final size:30
Alignment explanation
Indices: 9421192--9421274 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 30
9421182 CGTATTACAC
* *
9421192 AACTTTTTATAA-TTATATTTTTGACCATA
1 AACTTTTTAAAATTTATATTTTGGACCATA
*
9421221 AACTTTTTAAAAGTTTATATTTTGG-CCACA
1 AACTTTTTAAAA-TTTATATTTTGGACCATA
* *
9421251 TAAC-TTTAAAAATTTATAATTTGG
1 -AACTTTTTAAAATTTATATTTTGG
9421275 TAACTAACCA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
29 22 0.48
30 11 0.24
31 13 0.28
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (30 bp):
AACTTTTTAAAATTTATATTTTGGACCATA
Found at i:9424725 original size:20 final size:20
Alignment explanation
Indices: 9424697--9424734 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9424687 TTTCAAAGGG
*
9424697 ATGCGTCGATGCACCAATCC
1 ATGCATCGATGCACCAATCC
9424717 ATGCATCGATGCACCAAT
1 ATGCATCGATGCACCAAT
9424735 GAATTAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (20 bp):
ATGCATCGATGCACCAATCC
Found at i:9424787 original size:45 final size:45
Alignment explanation
Indices: 9424716--9424818 Score: 111
Period size: 46 Copynumber: 2.3 Consensus size: 45
9424706 TGCACCAATC
* *
9424716 CATGCATCGATGCACCAATGAATTAATTG-AACATCGAATGTAGTT
1 CATGCATCGATGCACCAATGAATTAA-TGAAACATCAAATGCAGTT
** *
9424761 CATGCATCGATGCACTC-ATGTTTTAATGAAAACATCAAATGCATTT
1 CATGCATCGATGCAC-CAATGAATTAATG-AAACATCAAATGCAGTT
*
9424807 GATGCATCGATG
1 CATGCATCGATG
9424819 TACATACCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.04
45 22 0.45
46 25 0.51
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (45 bp):
CATGCATCGATGCACCAATGAATTAATGAAACATCAAATGCAGTT
Found at i:9424866 original size:64 final size:65
Alignment explanation
Indices: 9424761--9424882 Score: 192
Period size: 64 Copynumber: 1.9 Consensus size: 65
9424751 GAATGTAGTT
* * *
9424761 CATGCATCGATGCACTCATGTTTTAATGAAAACATCAAATGCATTTGATGCATCGATGTACATAC
1 CATGCATCGATGCACTCAGGCTTTAATCAAAACATCAAATGCATTTGATGCATCGATGTACATAC
* *
9424826 CATGCATCGATGCACTCAGGCTTT-CTCAAAACATCGAATGCATTTGATGCATCGATG
1 CATGCATCGATGCACTCAGGCTTTAATCAAAACATCAAATGCATTTGATGCATCGATG
9424883 CACACTTAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
64 30 0.58
65 22 0.42
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (65 bp):
CATGCATCGATGCACTCAGGCTTTAATCAAAACATCAAATGCATTTGATGCATCGATGTACATAC
Found at i:9429374 original size:47 final size:45
Alignment explanation
Indices: 9429280--9429405 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
9429270 GTAACCATGC
* * *
9429280 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
* * *
9429324 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
*
9429371 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
9429406 AGATTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 22 0.31
45 11 0.15
46 1 0.01
47 38 0.53
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:9431137 original size:6 final size:6
Alignment explanation
Indices: 9431126--9431170 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
9431116 AAGACCCATA
9431126 GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGT
1 GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGT
9431171 TATGATACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.16, C:0.16, G:0.36, T:0.33
Consensus pattern (6 bp):
GGTCAT
Found at i:9432281 original size:18 final size:17
Alignment explanation
Indices: 9432260--9432343 Score: 69
Period size: 18 Copynumber: 4.5 Consensus size: 17
9432250 GATATATTAT
9432260 AAAAAAATAGAAAAAGAA
1 AAAAAAAT-GAAAAAGAA
9432278 AAAAAAATGAAAATGAGAAA
1 AAAAAAATGAAAA--AG-AA
* * *
9432298 GAAAAGAAAAGAAATAGAG
1 -AAAA-AAATGAAAAAGAA
*
9432317 AAAAAAATGAGAAATGAA
1 AAAAAAATGA-AAAAGAA
9432335 AAAAAAATG
1 AAAAAAATG
9432344 CGAGACTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
17 10 0.19
18 25 0.47
19 3 0.06
20 4 0.08
21 4 0.08
22 7 0.13
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (17 bp):
AAAAAAATGAAAAAGAA
Found at i:9432320 original size:13 final size:12
Alignment explanation
Indices: 9432288--9432335 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
9432278 AAAAAAATGA
9432288 AAATGAG-AAAG
1 AAATGAGAAAAG
9432299 AAA--AGAAAAG
1 AAATGAGAAAAG
9432309 AAATAGAGAAAA-
1 AAAT-GAGAAAAG
*
9432321 AAATGAGAAATG
1 AAATGAGAAAAG
9432333 AAA
1 AAA
9432336 AAAAAATGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
9 2 0.06
10 7 0.23
11 9 0.29
12 7 0.23
13 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (12 bp):
AAATGAGAAAAG
Found at i:9432322 original size:39 final size:39
Alignment explanation
Indices: 9432260--9432341 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
9432250 GATATATTAT
9432260 AAAAAAATAGAAAAAGAAAAAAAAATGA-AAATGAGAAAGA
1 AAAAAAATAGAAAAAGAAAAAAAAATGAGAAATGA-AAA-A
* * *
9432300 AAAGAAA-AGAAATAGAGAAAAAAATGAGAAATGAAAAA
1 AAAAAAATAGAAAAAGAAAAAAAAATGAGAAATGAAAAA
9432338 AAAA
1 AAAA
9432342 TGCGAGACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 4 0.11
39 21 0.57
40 12 0.32
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (39 bp):
AAAAAAATAGAAAAAGAAAAAAAAATGAGAAATGAAAAA
Found at i:9437174 original size:24 final size:24
Alignment explanation
Indices: 9437142--9437200 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
9437132 TTAAAGCTTC
9437142 TTTTGATAATGTTGGAACAAAACG
1 TTTTGATAATGTTGGAACAAAACG
9437166 TTTTGATAATGTTGGAACAAAACG
1 TTTTGATAATGTTGGAACAAAACG
*
9437190 TTTTGAAAATG
1 TTTTGATAATG
9437201 GAGAAAATTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (24 bp):
TTTTGATAATGTTGGAACAAAACG
Found at i:9437890 original size:18 final size:18
Alignment explanation
Indices: 9437867--9437906 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
9437857 CTAAGGATGA
9437867 GCATGATAGTTGGTTATG
1 GCATGATAGTTGGTTATG
9437885 GCATGATAGTTGGTTATG
1 GCATGATAGTTGGTTATG
9437903 GCAT
1 GCAT
9437907 AGGAGACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.23, C:0.07, G:0.33, T:0.38
Consensus pattern (18 bp):
GCATGATAGTTGGTTATG
Found at i:9443294 original size:45 final size:48
Alignment explanation
Indices: 9443251--9443373 Score: 168
Period size: 45 Copynumber: 2.7 Consensus size: 48
9443241 TGAATTAATT
* * * *
9443251 AAACATCGAATGTC-GTTCATGCATCGATGCACTC-GGGTTTTAATGA
1 AAACATCGAATGTCATTTGATGCATCGATGCACTCAGGCTTTTAATCA
9443297 AAACATCGAATG-CATTTGATGCATCGATGCACTCAGGCTTTT--TCA
1 AAACATCGAATGTCATTTGATGCATCGATGCACTCAGGCTTTTAATCA
9443342 AAACATCGAAT-TCATTTGATGCATCGATGCAC
1 AAACATCGAATGTCATTTGATGCATCGATGCAC
9443374 ACTTAGTGCA
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
45 34 0.49
46 30 0.43
47 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (48 bp):
AAACATCGAATGTCATTTGATGCATCGATGCACTCAGGCTTTTAATCA
Found at i:9443457 original size:21 final size:21
Alignment explanation
Indices: 9443433--9443487 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
9443423 TTTACAGTTG
9443433 ATGCATTGATGCACCTTATGT
1 ATGCATTGATGCACCTTATGT
** *
9443454 ATGCATCAATGCACCTTGTGT
1 ATGCATTGATGCACCTTATGT
9443475 ATGCATTGATGCA
1 ATGCATTGATGCA
9443488 TACACGCTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (21 bp):
ATGCATTGATGCACCTTATGT
Found at i:9451045 original size:56 final size:57
Alignment explanation
Indices: 9450913--9451046 Score: 137
Period size: 59 Copynumber: 2.3 Consensus size: 57
9450903 ATATGCACAG
* * * * *
9450913 TAGTGCTAA-CCCAAGTATGACACATAAGGTCGTGCCCGCCATCTATACTAGGTATACTT
1 TAGTGC-AATCCCAAATATGACACATAAGGTCCTGCCCACCATATACACTA-G-ATACTT
* * * * *
9450972 AAGTACAGTCCCAAATATGACACATAAGGTCCTTCCCACCATATGCACTA-ATACTT
1 TAGTGCAATCCCAAATATGACACATAAGGTCCTGCCCACCATATACACTAGATACTT
9451028 TAGTGCAATCCCAAATATG
1 TAGTGCAATCCCAAATATG
9451047 CAACCTGTTG
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
56 22 0.36
58 1 0.02
59 38 0.62
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (57 bp):
TAGTGCAATCCCAAATATGACACATAAGGTCCTGCCCACCATATACACTAGATACTT
Found at i:9457871 original size:663 final size:667
Alignment explanation
Indices: 9456565--9457873 Score: 1694
Period size: 663 Copynumber: 2.0 Consensus size: 667
9456555 TTTGAAGTTA
* * * *
9456565 TTTGATCCAATCTAATAGTTCAGGCCTCAACCTTAATTATGCAACAAGTGCACCATCATTCTTTA
1 TTTGATCCAATCTAATAGTGCAAGCCTCAACCTAAATTATGCAACAAATGCACCATCATTCTTTA
* * ***
9456630 TTGTTAATCGAGCATCTAAAGCTCTAAGAATATAAAAGGTCTTTTCGTTAAGTTTATCAGCTACC
66 TTGATAATCGAGCATCTAAAGCTCTAAGAATATAAAAGGTCTTTTCGCTAAGCACATCAGCTACC
* * ** *
9456695 ATATTAGTCTTCCCATGATGGTAATCAATAATCACATCATAGTCTTTTAGAAACTCAATCCATCT
131 ACATTAGCCTTCCCATGATGGTAAAAAATAATCAAATCATAGTCTTTTAGAAACTCAATCCATCT
** * * *
9456760 TTTTTTCCTTAGATTTAATTTCTTCTAAGTTAGCAGACACTTCAAACTTTCATGATTTGTATAAA
196 CCTTTACCTTAGATTTAATTCCTTCTAAGTTAGCAGACACTTCAAACTTTCATGATCTGTATAAA
* * *
9456825 TATACCATTGCTCACCATATAGATAGTGGCACTAAATCTTCAAAGCAAATACCACAGCTGCTAAC
261 TATAACAATGCTCACCATATAGATAGTGGCACTAAATCTTCAAAGCAAATACCACAACTGCTAAC
9456890 TCGAAATCATGGGTCAAATAATTTTCTTCGTATGTCTTTAACTGTCTTGAAGCATATGCTACCAC
326 TCGAAATCATGGGTCAAATAATTTTCTTCGTATGTCTTTAACTGTCTT--AG-A-A---TACCAC
* * *
9456955 TTTGCCTTCATGCATTAACACACACTCCAAACCGTTATGAGATGCATCACTATAAATCACATAAA
384 TTTGCCTTCATACATTAACACACACCCCAAACCATTATGAGATGCATCACTATAAATCACATAAA
* * * *
9457020 TTTTACCTGATTCTAGTTACACTAAAACCTTCACTTCTTCCAGAGTCTTCTTAAGTATATGGAAG
449 TTTTACCTGATTCTAGTAACACTAAAACCTGCAATTCTTCCAGAATCTTCTTAAGTATATGGAAG
** **
9457085 CTTTCTCGGCACTTTTCTATCCAAACAAATGGTACATCTTTCCTGAGAAGCTTAGATAGTGGAAA
514 CTTTCTCGGCACTTTTCTATCCAAACAAATGACACATCTTTCCTGAGAAGCTTAGATAGTACAAA
*
9457150 AGCAATCATTGATAAATTCTTCACGAATCTTCAATAATAGCCAACTAATCCCAAGAAACTTCAAA
579 AGCAATCATTGATAAATTCTTCACGAATCTTCAATAATAGACAACTAATCCCAAGAAACTTCAAA
9457215 CTTCAGAAACATTCTTCAAATTTC
644 CTTCAGAAACATTCTTCAAATTTC
* * * * *
9457239 TTTGATTCAATCTAATAGTGCAAGCCTCAACCTAAATTCTGCAATAAATGTACCATTATTCTTTA
1 TTTGATCCAATCTAATAGTGCAAGCCTCAACCTAAATTATGCAACAAATGCACCATCATTCTTTA
* * *
9457304 TTGATAATCGAGCATCTAAAGTTCTAAGAGT-TGAGAAGGTC-TTTCGGCTAAGCACATCAGCTA
66 TTGATAATCGAGCATCTAAAGCTCTAAGAATAT-AAAAGGTCTTTTC-GCTAAGCACATCAGCTA
*
9457367 CCACATTAGCCTT-CCA-GTATGGTAAAAAATAATCAAATCATAGTCTTTTAGAAGCTCAATCCA
129 CCACATTAGCCTTCCCATG-ATGGTAAAAAATAATCAAATCATAGTCTTTTAGAAACTCAATCCA
* * * * *
9457430 TCTCCTTTACCTTATATTTCATTCCTTCTTAGTTAGCAGATACTTCAAACTTTTATGATCTGTAT
193 TCTCCTTTACCTTAGATTTAATTCCTTCTAAGTTAGCAGACACTTCAAACTTTCATGATCTGTAT
* * *
9457495 TAGTATAACAATGCTCACCATATAGATAGTGGTGAC-AAATCTTCAAAGCAAATACCACAACTGC
258 AAATATAACAATGCTCACCATATAGATAGTGG-CACTAAATCTTCAAAGCAAATACCACAACTGC
* * * * * * *
9457559 TAACTCTAAATCATGGGTTAGATAATTTTGTTTGTGTGTCTTTAATTGTCTT-G-A-ACCACTTT
322 TAACTCGAAATCATGGGTCAAATAATTTTCTTCGTATGTCTTTAACTGTCTTAGAATACCACTTT
* * *
9457621 GCCTTCCTACATTAACACATACCCCAAACTATTATGAGATGCATCACTATAAATCACAT-AATCT
387 GCCTTCATACATTAACACACACCCCAAACCATTATGAGATGCATCACTATAAATCACATAAAT-T
* * * * *
9457685 TTACCTGATT-TCGGTAACATTAAAA-CTGGATATTCTGT-TAGAATCTTCTTAAGTATATTGAA
451 TTACCTGATTCT-AGTAACACTAAAACCTGCA-ATTCT-TCCAGAATCTTCTTAAGTATATGGAA
* *
9457747 GTTTTCTTGGCACTTTTCTATCCAAACAAATGACACATCTTTCCTGAGCAA-CTTAG-TAAGTAC
513 GCTTTCTCGGCACTTTTCTATCCAAACAAATGACACATCTTTCCTGAG-AAGCTTAGAT-AGTAC
* * * * *
9457810 AGAAGCAGTCATTGATAAATTCTTTACGAGTCTT-ATATAATAGACAACTAATCCTAAGAAACTT
576 AAAAGCAATCATTGATAAATTCTTCACGAATCTTCA-ATAATAGACAACTAATCCCAAGAAACTT
9457874 TGAAGTTCAT
Statistics
Matches: 551, Mismatches: 73, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
662 9 0.02
663 215 0.39
664 3 0.01
667 1 0.00
670 1 0.00
672 1 0.00
673 204 0.37
674 117 0.21
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (667 bp):
TTTGATCCAATCTAATAGTGCAAGCCTCAACCTAAATTATGCAACAAATGCACCATCATTCTTTA
TTGATAATCGAGCATCTAAAGCTCTAAGAATATAAAAGGTCTTTTCGCTAAGCACATCAGCTACC
ACATTAGCCTTCCCATGATGGTAAAAAATAATCAAATCATAGTCTTTTAGAAACTCAATCCATCT
CCTTTACCTTAGATTTAATTCCTTCTAAGTTAGCAGACACTTCAAACTTTCATGATCTGTATAAA
TATAACAATGCTCACCATATAGATAGTGGCACTAAATCTTCAAAGCAAATACCACAACTGCTAAC
TCGAAATCATGGGTCAAATAATTTTCTTCGTATGTCTTTAACTGTCTTAGAATACCACTTTGCCT
TCATACATTAACACACACCCCAAACCATTATGAGATGCATCACTATAAATCACATAAATTTTACC
TGATTCTAGTAACACTAAAACCTGCAATTCTTCCAGAATCTTCTTAAGTATATGGAAGCTTTCTC
GGCACTTTTCTATCCAAACAAATGACACATCTTTCCTGAGAAGCTTAGATAGTACAAAAGCAATC
ATTGATAAATTCTTCACGAATCTTCAATAATAGACAACTAATCCCAAGAAACTTCAAACTTCAGA
AACATTCTTCAAATTTC
Found at i:9462024 original size:65 final size:66
Alignment explanation
Indices: 9461930--9462064 Score: 227
Period size: 65 Copynumber: 2.1 Consensus size: 66
9461920 AAAGCTAAAC
* * *
9461930 TTAGGATGAATTTTAAAAGAATTCGAAAATAATAGTACTTTTGAGTATTATTATTTTGTATAATT
1 TTAGGATGAATTTTAAAAGAATTAGAAAATAATAATACTTTTGAGTATTATTATTTTATATAATT
9461995 G
66 G
*
9461996 TTAGGATGAA-TTTAAAAGAATTATAAAATAATAATACTTTTGAGTATTATTATTTTATATAATT
1 TTAGGATGAATTTTAAAAGAATTAGAAAATAATAATACTTTTGAGTATTATTATTTTATATAATT
9462060 G
66 G
9462061 TTAG
1 TTAG
9462065 TAAGTATAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
65 55 0.85
66 10 0.15
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.44
Consensus pattern (66 bp):
TTAGGATGAATTTTAAAAGAATTAGAAAATAATAATACTTTTGAGTATTATTATTTTATATAATT
G
Found at i:9465205 original size:16 final size:16
Alignment explanation
Indices: 9465184--9465216 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9465174 TAAATTCATA
9465184 ATGATC-CTTCACCATT
1 ATGATCACTTCA-CATT
9465200 ATGATCACTTCACATT
1 ATGATCACTTCACATT
9465216 A
1 A
9465217 ATTATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (16 bp):
ATGATCACTTCACATT
Found at i:9471567 original size:18 final size:18
Alignment explanation
Indices: 9471544--9471594 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
9471534 ACCGGTCACA
9471544 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
9471562 ACCCGACCCGTTGACCCG
1 ACCCGACCCGTTGACCCG
*
9471580 ACCCGA-TCGTTGACC
1 ACCCGACCCGTTGACC
9471595 GTTGACCGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 8 0.25
18 24 0.75
ACGTcount: A:0.18, C:0.47, G:0.22, T:0.14
Consensus pattern (18 bp):
ACCCGACCCGTTGACCCG
Found at i:9471693 original size:29 final size:29
Alignment explanation
Indices: 9471631--9471699 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
9471621 ATCCAGTTTT
* * * *
9471631 GGTGCTATTCTGGTAATTATTTCGAAATG
1 GGTGCTATTTTGATAATTATTTCAAAAAG
* *
9471660 TGTGCTATTTTGATAATTATTTTAAAAAG
1 GGTGCTATTTTGATAATTATTTCAAAAAG
9471689 GGTGCTATTTT
1 GGTGCTATTTT
9471700 TGTAAAATGT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.46
Consensus pattern (29 bp):
GGTGCTATTTTGATAATTATTTCAAAAAG
Found at i:9475073 original size:39 final size:39
Alignment explanation
Indices: 9475019--9475099 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
9475009 ATAATTTGAT
*
9475019 ATGTTAGTATCTAACAAT-ACTTTTGAAAAGGAATGGTAA
1 ATGTTAGTATCTAACAATAAC-TCTGAAAAGGAATGGTAA
9475058 ATGTTAGTATCTAACAATAACTCTGAAAAGGAATGGTAA
1 ATGTTAGTATCTAACAATAACTCTGAAAAGGAATGGTAA
9475097 ATG
1 ATG
9475100 ATTTGATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 38 0.95
40 2 0.05
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.31
Consensus pattern (39 bp):
ATGTTAGTATCTAACAATAACTCTGAAAAGGAATGGTAA
Found at i:9475191 original size:24 final size:24
Alignment explanation
Indices: 9475164--9475226 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
9475154 ACCATTGGGT
* * *
9475164 ACTCTTGTATCAGTTCAATTATGG
1 ACTCTTGTATCAGTGCAAATATGC
* *
9475188 ACTCCTATATCAGTGCAAATATGC
1 ACTCTTGTATCAGTGCAAATATGC
*
9475212 ACTCTTGTATTAGTG
1 ACTCTTGTATCAGTG
9475227 TATTCGTGCA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (24 bp):
ACTCTTGTATCAGTGCAAATATGC
Found at i:9475261 original size:25 final size:24
Alignment explanation
Indices: 9475199--9475264 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
9475189 CTCCTATATC
*
9475199 AGTGCAAAT-ATGCACTCTTGTATT
1 AGTGC-AATCATGCACTCATGTATT
* * * *
9475223 AGTGTATTCGTGCATTCATGTAATT
1 AGTGCAATCATGCACTCATGT-ATT
9475248 AGTGCAATCATGCACTC
1 AGTGCAATCATGCACTC
9475265 CAATATTAGT
Statistics
Matches: 31, Mismatches: 9, Indels: 3
0.72 0.21 0.07
Matches are distributed among these distances:
23 2 0.06
24 13 0.42
25 16 0.52
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (24 bp):
AGTGCAATCATGCACTCATGTATT
Found at i:9475312 original size:24 final size:24
Alignment explanation
Indices: 9475245--9475337 Score: 91
Period size: 24 Copynumber: 3.9 Consensus size: 24
9475235 CATTCATGTA
**
9475245 ATTAGTGCAATCATGCACTCCAAT
1 ATTAGTGCAATTTTGCACTCCAAT
* * * *
9475269 ATTAGTACTAA-TGTGTACTCCTAT
1 ATTAGTGC-AATTTTGCACTCCAAT
*
9475293 ATTAGTGCAATTTTGCACTCCCGA-
1 ATTAGTGCAATTTTGCACT-CCAAT
9475317 ATTAGTGCAATTTTGCACTCC
1 ATTAGTGCAATTTTGCACTCC
9475338 CGAATTAGTG
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
23 4 0.07
24 48 0.84
25 5 0.09
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (24 bp):
ATTAGTGCAATTTTGCACTCCAAT
Found at i:9475338 original size:24 final size:24
Alignment explanation
Indices: 9475293--9475366 Score: 116
Period size: 24 Copynumber: 3.1 Consensus size: 24
9475283 GTACTCCTAT
9475293 ATTAGTGCAATTTTGCACTCCCGA
1 ATTAGTGCAATTTTGCACTCCCGA
9475317 ATTAGTGCAATTTTGCACTCCCGA
1 ATTAGTGCAATTTTGCACTCCCGA
*
9475341 ATTAGTGC-ATTCGTGCACTCCC-A
1 ATTAGTGCAATT-TTGCACTCCCGA
9475364 ATT
1 ATT
9475367 CTAGTACTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
23 7 0.15
24 41 0.85
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (24 bp):
ATTAGTGCAATTTTGCACTCCCGA
Found at i:9475395 original size:24 final size:25
Alignment explanation
Indices: 9475330--9475406 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 25
9475320 AGTGCAATTT
*
9475330 TGCACTCCCGAA-T-TAGTGCATTCG
1 TGCACTCCC-AATTCTAGTACATTCG
*
9475354 TGCACTCCCAATTCTAGTACTTTCG
1 TGCACTCCCAATTCTAGTACATTCG
* * *
9475379 TGTACT-CCAATTTTAGTGCATTCG
1 TGCACTCCCAATTCTAGTACATTCG
9475403 TGCA
1 TGCA
9475407 ATCCTATATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
23 2 0.05
24 28 0.64
25 14 0.32
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (25 bp):
TGCACTCCCAATTCTAGTACATTCG
Found at i:9477486 original size:19 final size:19
Alignment explanation
Indices: 9477462--9477502 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
9477452 TACTTTCACA
*
9477462 TTTCAGATTTATAACTCAT
1 TTTCAGATTCATAACTCAT
9477481 TTTCAGATTCATAACTCAT
1 TTTCAGATTCATAACTCAT
9477500 TTT
1 TTT
9477503 TACATTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTCAGATTCATAACTCAT
Found at i:9477509 original size:19 final size:19
Alignment explanation
Indices: 9477462--9477511 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
9477452 TACTTTCACA
* *
9477462 TTTCAGATTTATAACTCAT
1 TTTCACATTCATAACTCAT
*
9477481 TTTCAGATTCATAACTCAT
1 TTTCACATTCATAACTCAT
*
9477500 TTTTACATTCAT
1 TTTCACATTCAT
9477512 TGCCCAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.30, C:0.18, G:0.04, T:0.48
Consensus pattern (19 bp):
TTTCACATTCATAACTCAT
Found at i:9479440 original size:30 final size:30
Alignment explanation
Indices: 9479404--9479474 Score: 126
Period size: 30 Copynumber: 2.4 Consensus size: 30
9479394 TTTGGAAAGT
9479404 TGGAAAAAGTTGAGGATTAAATCAAAAATA
1 TGGAAAAAGTTGAGGATTAAATCAAAAATA
*
9479434 TGGAAAAAGTTGAGGATTAAATCAATAATA
1 TGGAAAAAGTTGAGGATTAAATCAAAAATA
9479464 TGG-AAAAGTTG
1 TGGAAAAAGTTG
9479475 GGAACTTAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 8 0.20
30 32 0.80
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.25
Consensus pattern (30 bp):
TGGAAAAAGTTGAGGATTAAATCAAAAATA
Found at i:9480103 original size:21 final size:22
Alignment explanation
Indices: 9480065--9480107 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
9480055 ATTAAAAAAT
*
9480065 ATTAAAGGAAGTATCGATACTC
1 ATTAAAGGAAGTACCGATACTC
9480087 ATTAAAGG-AGTACCGATACTC
1 ATTAAAGGAAGTACCGATACTC
9480108 CCTGTCCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (22 bp):
ATTAAAGGAAGTACCGATACTC
Found at i:9483551 original size:46 final size:46
Alignment explanation
Indices: 9483478--9483604 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 46
9483468 ACCACTATGT
* * * * *
9483478 ATTTTCATTTGTGGTATCATTTCATGCCAATTATGCACTGTTATAC
1 ATTTTCATTTATGGCATCCTTTTATGCCAATTATGCACAGTTATAC
*
9483524 ATTTTCATTTATGGCATCCTTTTATGCCAATTATACACAGTTATAC
1 ATTTTCATTTATGGCATCCTTTTATGCCAATTATGCACAGTTATAC
*
9483570 ATTTTCATTTATGGCAT-CTTTTCATGCTAATTATG
1 ATTTTCATTTATGGCATCCTTTT-ATGCCAATTATG
9483605 TAATGTTCTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 5 0.07
46 67 0.93
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.46
Consensus pattern (46 bp):
ATTTTCATTTATGGCATCCTTTTATGCCAATTATGCACAGTTATAC
Found at i:9484024 original size:56 final size:56
Alignment explanation
Indices: 9483908--9484451 Score: 647
Period size: 56 Copynumber: 9.9 Consensus size: 56
9483898 ACCAATACGA
* * *
9483908 AAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACACATAGTGCCCATACA-A
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATA-ATG
* *
9483963 AAATTCATAAACTCATTATGAAGTTCTTAGCTTTTGCACACGAAGTGCCCATAATG
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
**
9484019 AAATTCATAAACTC-------A--TCTTAGCTTTTGCACACAAAGTGCCCATACGG
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
* * *
9484066 AAATTCATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACTT
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
* * * **
9484122 AAATTCATAAACTCATTATGAATTGCTTAGCTTTTACACATAAAGTGCCCATACGG
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
*
9484178 AAATTCATAAACTCATTATGAATTTCTTAG-TTTTGTCACACAAAGTTCCCATACA-G
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTG-CACACAAAGTGCCCATA-ATG
* * * *
9484234 ATATTCATAAACTCGTTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCCT-ACG
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
* * *
9484289 AAAATTCATAAACTCATTATGAATTTCTTATCTTTTGCACACAAAGTTG-TCAT-ACG
1 -AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAG-TGCCCATAATG
* *
9484345 AAAATTCATAAAATCATTATGAATTTCTTA-ATTTTGCACACAAAGTGCCCAT-ATGG
1 -AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAAT-G
*
9484401 AAATTCATAAACTCATTATGAATTTTTTAGCTTTTGCACACAGATAGTGCC
1 AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACA-A-AGTGCC
9484452 ATTCGATAAT
Statistics
Matches: 429, Mismatches: 38, Indels: 41
0.84 0.07 0.08
Matches are distributed among these distances:
47 43 0.10
49 1 0.00
54 4 0.01
55 79 0.18
56 288 0.67
57 8 0.02
58 6 0.01
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (56 bp):
AAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATAATG
Found at i:9484041 original size:47 final size:47
Alignment explanation
Indices: 9483987--9484081 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
9483977 ATTATGAAGT
* *
9483987 TCTTAGCTTTTGCACACGAAGTGCCCATAATGAAATTCATAAACTCA
1 TCTTAGCTTTTGCACACAAAGTGCCCATAAGGAAATTCATAAACTCA
*
9484034 TCTTAGCTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACTCA
1 TCTTAGCTTTTGCACACAAAGTGCCCATAAGGAAATTCATAAACTCA
9484081 T
1 T
9484082 TATGAATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (47 bp):
TCTTAGCTTTTGCACACAAAGTGCCCATAAGGAAATTCATAAACTCA
Found at i:9484280 original size:168 final size:166
Alignment explanation
Indices: 9483902--9484451 Score: 735
Period size: 168 Copynumber: 3.3 Consensus size: 166
9483892 CCCACTACCA
* * *
9483902 ATACGAAAATTCATAAACTTATTATGAATTTCTTAG-TTTTGCACACATAGTGCCCATACAAAAA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACAAAAA
* **
9483966 TTCATAAACTCATTATGAAGTTCTTAGCTTTTGCACACGAAGTGCCCATAATGAAATTCATAAAC
66 TTCATAAACTCATTATGAA-TTCTTAGCTTTTGCACACAAAGTGCCCATACGGAAATTCATAAAC
9484031 TC-------A--TCTTAGCTTTTGCACACAAAGTGCCC
130 TCATTATGAATTTCTTAG-TTTTGCACACAAAGTGCCC
* **
9484060 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACTTAAA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACAAAAA
* *
9484125 TTCATAAACTCATTATGAATTGCTTAGCTTTTACACATAAAGTGCCCATACGGAAATTCATAAAC
66 TTCATAAACTCATTATGAATT-CTTAGCTTTTGCACACAAAGTGCCCATACGGAAATTCATAAAC
*
9484190 TCATTATGAATTTCTTAGTTTTGTCACACAAAGTTCCC
130 TCATTATGAATTTCTTAGTTTTG-CACACAAAGTGCCC
* * * * *
9484228 ATACAGATATTCATAAACTCGTTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCCTACGAAAA
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACAAAAA
* * *
9484293 TTCATAAACTCATTATGAATTTCTTATCTTTTGCACACAAAGTTG-TCATACGAAAATTCATAAA
66 TTCATAAACTCATTATGAA-TTCTTAGCTTTTGCACACAAAG-TGCCCATACGGAAATTCATAAA
* *
9484357 ATCATTATGAATTTCTTAATTTTGCACACAAAGTGCCC
129 CTCATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
9484395 ATATGGAAATTCATAAACTCATTATGAATTTTTTAGCTTTTGCACACAGATAGTGCC
1 ATACGGAAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACA-A-AGTGCC
9484452 ATTCGATAAT
Statistics
Matches: 345, Mismatches: 31, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
158 36 0.10
159 84 0.24
166 1 0.00
167 61 0.18
168 153 0.44
169 10 0.03
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (166 bp):
ATACGGAAATTCATAAACTCATTATGAATTTCTTAGCTTTTGCACACAAAGTGCCCATACAAAAA
TTCATAAACTCATTATGAATTCTTAGCTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACT
CATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:9484824 original size:42 final size:42
Alignment explanation
Indices: 9484777--9484866 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
9484767 TTCATAGTAT
* * *
9484777 CGATACCTCTAC-CATGGTATCGATACTTCTATACTATGGTAC
1 CGATACC-CTACTCATAGTATCGATACTACTACACTATGGTAC
* *
9484819 CGATACCCTTCTCTTAGTATCGATACTACTACACTATGGTAC
1 CGATACCCTACTCATAGTATCGATACTACTACACTATGGTAC
*
9484861 TGATAC
1 CGATAC
9484867 TCCCTTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.07
42 38 0.93
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (42 bp):
CGATACCCTACTCATAGTATCGATACTACTACACTATGGTAC
Found at i:9485788 original size:81 final size:81
Alignment explanation
Indices: 9485625--9485853 Score: 205
Period size: 81 Copynumber: 2.8 Consensus size: 81
9485615 TTAAATAAAT
* * * * * *
9485625 GTCGTAATAGAGTGGTAATGTT-GCGG-TGTTTATAGCTCAAACGCCGGAATAGAGTTGATTATA
1 GTCGTAATAGAGTAGTAAT-TTAGCGGCTTTTTATA---CAAATGCCGCAATAGGGTTGTTTATA
* * *
9485688 ATGGCATTTTTTCAACAAAC
62 GTGGCATTTGTCCAACAAAC
9485708 GTCGTAATAGAGTAGTAATTTAGCGGCTTTTTATACAAATGCCGCAATAGGGTTGTTTATAGTGG
1 GTCGTAATAGAGTAGTAATTTAGCGGCTTTTTATACAAATGCCGCAATAGGGTTGTTTATAGTGG
**
9485773 TGTTTGTCCAACAAAC
66 CATTTGTCCAACAAAC
* * * * * *
9485789 GAT-GCT-ATAGAGAAGTAATTTAGTGGCATTTATCAAACAAATGTCGTAATAGGGTTGTTTATA
1 G-TCG-TAATAGAGTAGTAATTTAGCGGC-TTT-TTATACAAATGCCGCAATAGGGTTGTTTATA
9485852 GT
62 GT
9485854 CACGTTTGTG
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
81 58 0.47
82 7 0.06
83 51 0.41
84 7 0.06
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (81 bp):
GTCGTAATAGAGTAGTAATTTAGCGGCTTTTTATACAAATGCCGCAATAGGGTTGTTTATAGTGG
CATTTGTCCAACAAAC
Found at i:9485882 original size:83 final size:82
Alignment explanation
Indices: 9485704--9485902 Score: 206
Period size: 83 Copynumber: 2.4 Consensus size: 82
9485694 TTTTTTCAAC
* * * * *
9485704 AAACGTCGTAATAGAGTAGTAATTTAGCGGC-TTTTTATACAAATGCCGCAATAGGGTTGTTTAT
1 AAACGTCGCAATAGAGAAGTAATTTAGAGGCATTTTCAAACAAATGCCGCAATAGGGTTGTTTAT
*** *
9485768 AGTGGTGTTTGTCCAAC
66 AGTCACGTTTGTCCAAA
* * * *
9485785 AAACGAT-GCTATAGAGAAGTAATTTAGTGGCATTTATCAAACAAATGTCGTAATAGGGTTGTTT
1 AAACG-TCGCAATAGAGAAGTAATTTAGAGGCATTT-TCAAACAAATGCCGCAATAGGGTTGTTT
*
9485849 ATAGTCACGTTTGTGCAAA
64 ATAGTCACGTTTGTCCAAA
* *
9485868 AAATGTCGCAATAGAGCAAG-AATTTAAAGGCATTT
1 AAACGTCGCAATAGAG-AAGTAATTTAGAGGCATTT
9485903 GTCCTAGAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
81 25 0.26
82 5 0.05
83 63 0.66
84 3 0.03
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (82 bp):
AAACGTCGCAATAGAGAAGTAATTTAGAGGCATTTTCAAACAAATGCCGCAATAGGGTTGTTTAT
AGTCACGTTTGTCCAAA
Found at i:9487265 original size:22 final size:22
Alignment explanation
Indices: 9487237--9487280 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9487227 ACTTTTATGC
9487237 ATAACTTATGTTTTAATTAAAA
1 ATAACTTATGTTTTAATTAAAA
9487259 ATAACTTATGTTTTAATTAAAA
1 ATAACTTATGTTTTAATTAAAA
9487281 TGTATGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (22 bp):
ATAACTTATGTTTTAATTAAAA
Found at i:9496558 original size:43 final size:45
Alignment explanation
Indices: 9496457--9496571 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 45
9496447 TTTTTGTGTT
*
9496457 ATTTAGCGGCGTTTGTA-ACAAAAAATG-CTATAATATACCATAC
1 ATTTAGCGGCGTTTGTATACAAAAAATGCCGATAATATACCATAC
* ** * * *
9496500 ATTTTGCGGTATTTGTATTCTAAAAATGCCGCT-ATATACCA-AC
1 ATTTAGCGGCGTTTGTATACAAAAAATGCCGATAATATACCATAC
* *
9496543 CTTTAGCGGCGTTTGTATCCAAAAAATGC
1 ATTTAGCGGCGTTTGTATACAAAAAATGC
9496572 TGTGAAATAT
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
43 39 0.68
44 16 0.28
45 2 0.04
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (45 bp):
ATTTAGCGGCGTTTGTATACAAAAAATGCCGATAATATACCATAC
Found at i:9496716 original size:43 final size:43
Alignment explanation
Indices: 9496654--9496920 Score: 133
Period size: 43 Copynumber: 6.2 Consensus size: 43
9496644 GGGAAATACG
* * * *
9496654 CCGCTAAATATTAACACCTATTGCGACATTTTTCTCAAAAACG
1 CCGCTAAATCTCAACACCTATTGCGACATTTGTCTCAAAAACA
* * * * * * *
9496697 TCGCTAAATCTCAACACCTATTACGGCGTTTGTGTGAAAAATA
1 CCGCTAAATCTCAACACCTATTGCGACATTTGTCTCAAAAACA
* ** *** *
9496740 CCGCTAAATCTCAAGACCTATTGC-AGTGTTTGTGAGAAAAACG
1 CCGCTAAATCTCAACACCTATTGCGA-CATTTGTCTCAAAAACA
* * * * * **** *
9496783 CCACTAAATCTCAAAACTTATTGCGTCGTTTGTAAGGAAAACG
1 CCGCTAAATCTCAACACCTATTGCGACATTTGTCTCAAAAACA
* * * ***
9496826 CCGTTAAAACTCAACACCTATTGC-AGCGTTTGTGGGAAAAACA
1 CCGCTAAATCTCAACACCTATTGCGA-CATTTGTCTCAAAAACA
* * * * * * *
9496869 CCGCTAAACCTCAACACCTGTTGCGATATTTATATGAAAAACG
1 CCGCTAAATCTCAACACCTATTGCGACATTTGTCTCAAAAACA
9496912 CCGCTAAAT
1 CCGCTAAAT
9496921 ATTGTTACCT
Statistics
Matches: 174, Mismatches: 46, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
43 173 0.99
44 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (43 bp):
CCGCTAAATCTCAACACCTATTGCGACATTTGTCTCAAAAACA
Found at i:9496780 original size:86 final size:86
Alignment explanation
Indices: 9496690--9496887 Score: 234
Period size: 86 Copynumber: 2.3 Consensus size: 86
9496680 CATTTTTCTC
* ** * * *
9496690 AAAAACGTCGCTAAATCTCAACACCTATTACGGCGTTTGTGTGAAAAATACCGCTAAATCTCAAG
1 AAAAACGCCGCTAAATCTCAACACCTATTACGGCGTTTGTAAGAAAAACACCGCTAAAACTCAAC
*
9496755 ACCTATTGCAGTGTTTGTGAG
66 ACCTATTGCAGCGTTTGTGAG
* * * * * * * *
9496776 AAAAACGCCACTAAATCTCAAAACTTATTGCGTCGTTTGTAAGGAAAACGCCGTTAAAACTCAAC
1 AAAAACGCCGCTAAATCTCAACACCTATTACGGCGTTTGTAAGAAAAACACCGCTAAAACTCAAC
*
9496841 ACCTATTGCAGCGTTTGTGGG
66 ACCTATTGCAGCGTTTGTGAG
* *
9496862 AAAAACACCGCTAAACCTCAACACCT
1 AAAAACGCCGCTAAATCTCAACACCT
9496888 GTTGCGATAT
Statistics
Matches: 91, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (86 bp):
AAAAACGCCGCTAAATCTCAACACCTATTACGGCGTTTGTAAGAAAAACACCGCTAAAACTCAAC
ACCTATTGCAGCGTTTGTGAG
Found at i:9496910 original size:86 final size:86
Alignment explanation
Indices: 9496740--9496919 Score: 209
Period size: 86 Copynumber: 2.1 Consensus size: 86
9496730 GTGAAAAATA
* * * * * *
9496740 CCGCTAAATCTCAAGACCTATTGCAGTGTTTGTGAGAAAAACGCCACTAAATCTCAAAACTTATT
1 CCGCTAAAACTCAACACCTATTGCAGCGTTTGTGAGAAAAACACCACTAAACCTCAAAACCTATT
* * *
9496805 GCGTCGTTTGTAAGGAAAACG
66 GCGTCATTTATAAGAAAAACG
* * * * *
9496826 CCGTTAAAACTCAACACCTATTGCAGCGTTTGTGGGAAAAACACCGCTAAACCTCAACACCTGTT
1 CCGCTAAAACTCAACACCTATTGCAGCGTTTGTGAGAAAAACACCACTAAACCTCAAAACCTATT
*
9496891 GCGAT-ATTTATATGAAAAACG
66 GCG-TCATTTATAAGAAAAACG
9496912 CCGCTAAA
1 CCGCTAAA
9496920 TATTGTTACC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
86 76 0.99
87 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (86 bp):
CCGCTAAAACTCAACACCTATTGCAGCGTTTGTGAGAAAAACACCACTAAACCTCAAAACCTATT
GCGTCATTTATAAGAAAAACG
Found at i:9496944 original size:129 final size:129
Alignment explanation
Indices: 9496646--9496922 Score: 288
Period size: 129 Copynumber: 2.1 Consensus size: 129
9496636 GCGTTTGTGG
* * * * * * **** * *
9496646 GAAATACGCCGCTAAATATTAACACCTATTGCGACATTTTTCTCAAAAACGTCGCTAAATCTCAA
1 GAAAAACGCCACTAAATATCAAAACCTATTGCGTCATTTGTAAGGAAAACGCCGCTAAAACTCAA
* * * * * * *
9496711 CACCTATTACGGCGTTTGTGTGAAAAATACCGCTAAATCTCAAGACCTATTGCAGTGTTTGTGA
66 CACCTATTACAGCGTTTGTGGGAAAAACACCGCTAAACCTCAACACCTATTGCAGTATTTATGA
* * * *
9496775 GAAAAACGCCACTAAATCTCAAAACTTATTGCGTCGTTTGTAAGGAAAACGCCGTTAAAACTCAA
1 GAAAAACGCCACTAAATATCAAAACCTATTGCGTCATTTGTAAGGAAAACGCCGCTAAAACTCAA
* *
9496840 CACCTATTGCAGCGTTTGTGGGAAAAACACCGCTAAACCTCAACACCTGTTGC-GATATTTAT-A
66 CACCTATTACAGCGTTTGTGGGAAAAACACCGCTAAACCTCAACACCTATTGCAG-TATTTATGA
*
9496903 TGAAAAACGCCGCTAAATAT
1 -GAAAAACGCCACTAAATAT
9496923 TGTTACCTAT
Statistics
Matches: 119, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
128 2 0.02
129 117 0.98
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (129 bp):
GAAAAACGCCACTAAATATCAAAACCTATTGCGTCATTTGTAAGGAAAACGCCGCTAAAACTCAA
CACCTATTACAGCGTTTGTGGGAAAAACACCGCTAAACCTCAACACCTATTGCAGTATTTATGA
Found at i:9500179 original size:39 final size:39
Alignment explanation
Indices: 9500136--9500238 Score: 143
Period size: 39 Copynumber: 2.6 Consensus size: 39
9500126 TCACAGGCAT
9500136 GACCTTATGTGTAAGCACTTCAGTGCATATGGTGGGAAC
1 GACCTTATGTGTAAGCACTTCAGTGCATATGGTGGGAAC
* ** *
9500175 GACCTTATGTGTAAGCAATTTGGTGCATATGGTGGGTAC
1 GACCTTATGTGTAAGCACTTCAGTGCATATGGTGGGAAC
* * *
9500214 AACCTTATTTATAAGCACTTCAGTG
1 GACCTTATGTGTAAGCACTTCAGTG
9500239 TGACTCGCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (39 bp):
GACCTTATGTGTAAGCACTTCAGTGCATATGGTGGGAAC
Found at i:9504946 original size:19 final size:20
Alignment explanation
Indices: 9504911--9504948 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9504901 TGTAAATTAT
*
9504911 TGTTAGAGTGTTGAAATTGA
1 TGTTAGAATGTTGAAATTGA
9504931 TGTTAGAATG-TGAAATTG
1 TGTTAGAATGTTGAAATTG
9504949 TGCAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (20 bp):
TGTTAGAATGTTGAAATTGA
Found at i:9506979 original size:44 final size:44
Alignment explanation
Indices: 9506915--9507003 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
9506905 CTGGTGCCAA
* * *
9506915 AATGAATAATCACAAGACCATTAGGCCAAGGAAGATGTTTATCC
1 AATGAATAATCACAAAACCATTAGACCAAGGAAGATGTTCATCC
* * * * *
9506959 AATGAATCATCATAAAACCATTCGATCAAGGGAGATGTTCATCC
1 AATGAATAATCACAAAACCATTAGACCAAGGAAGATGTTCATCC
9507003 A
1 A
9507004 TTCTAGCCGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (44 bp):
AATGAATAATCACAAAACCATTAGACCAAGGAAGATGTTCATCC
Found at i:9507899 original size:39 final size:39
Alignment explanation
Indices: 9507844--9507933 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
9507834 ATATCGGTTT
* * *
9507844 GCACTTCGGTGCATATGGTGGGTA-ATACCTTATGTGTAA
1 GCACTTTGGTGTATATGGTGGGCACA-ACCTTATGTGTAA
*
9507883 GCACTTTGGTGTATATGGTGGGCACAATCTTATGTGTAA
1 GCACTTTGGTGTATATGGTGGGCACAACCTTATGTGTAA
*
9507922 GCACTTTTGTGT
1 GCACTTTGGTGT
9507934 GACTCGCATA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
39 44 0.98
40 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.28, T:0.37
Consensus pattern (39 bp):
GCACTTTGGTGTATATGGTGGGCACAACCTTATGTGTAA
Found at i:9516084 original size:23 final size:23
Alignment explanation
Indices: 9516052--9516101 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
9516042 GGAATCGATA
9516052 CCCC-TTGAAGGGAAACTGATTC
1 CCCCTTTGAAGGGAAACTGATTC
*
9516074 CCCCTTTGAAGGGGAACTGATTC
1 CCCCTTTGAAGGGAAACTGATTC
9516097 CCCCT
1 CCCCT
9516102 AGGGGAACCG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (23 bp):
CCCCTTTGAAGGGAAACTGATTC
Found at i:9516107 original size:19 final size:19
Alignment explanation
Indices: 9516060--9516124 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
9516050 TACCCCTTGA
*
9516060 AGGGAAACTGATTCCCCCTTT
1 AGGGGAACTGATTCCCCC--T
9516081 GAAGGGGAACTGATTCCCCCT
1 --AGGGGAACTGATTCCCCCT
*
9516102 AGGGGAACCGATTCCCCCT
1 AGGGGAACTGATTCCCCCT
9516121 AGGG
1 AGGG
9516125 TTATGGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 22 0.55
21 1 0.03
23 17 0.43
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (19 bp):
AGGGGAACTGATTCCCCCT
Found at i:9517757 original size:18 final size:18
Alignment explanation
Indices: 9517700--9517747 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
9517690 GAACATCACA
9517700 AGGAACAAGCACGAGAAG
1 AGGAACAAGCACGAGAAG
*
9517718 AGGAACAAGAACGAGAAG
1 AGGAACAAGCACGAGAAG
9517736 AGGAACAAGCAC
1 AGGAACAAGCAC
9517748 AACCAGAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.52, C:0.17, G:0.31, T:0.00
Consensus pattern (18 bp):
AGGAACAAGCACGAGAAG
Found at i:9521575 original size:22 final size:21
Alignment explanation
Indices: 9521535--9521597 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
9521525 AAACCCATAA
* *
9521535 AATTTATTTCATTTTAAAATTT
1 AATTTA-TTCATGTAAAAATTT
9521557 CAATTTATTCATGTAAAAAAATTT
1 -AATTTATTCATGT--AAAAATTT
9521581 AA-TTATTCATGTAAAAA
1 AATTTATTCATGTAAAAA
9521598 CATAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
20 5 0.14
22 16 0.44
23 8 0.22
24 7 0.19
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.46
Consensus pattern (21 bp):
AATTTATTCATGTAAAAATTT
Found at i:9521576 original size:23 final size:22
Alignment explanation
Indices: 9521550--9521597 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 22
9521540 ATTTCATTTT
9521550 AAAATTTCAATTTATTCATGTAAA
1 AAAATTT-AA-TTATTCATGTAAA
9521574 AAAATTTAATTATTCATGTAAA
1 AAAATTTAATTATTCATGTAAA
9521596 AA
1 AA
9521598 CATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 15 0.62
23 2 0.08
24 7 0.29
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (22 bp):
AAAATTTAATTATTCATGTAAA
Found at i:9523095 original size:978 final size:980
Alignment explanation
Indices: 9519663--9523368 Score: 5286
Period size: 978 Copynumber: 3.8 Consensus size: 980
9519653 CTTCCAAATT
*
9519663 AATAGCTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
1 AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
* * * * * * ** *
9519728 TTTGAATTTTCCAAATGATTAAATAATTTCATCAGATTCACTAAGAACTTAACTCTATCTAAACT
66 TCTGAATTCTCCGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
* * *
9519793 TTTAGCTGGCAATTTATATACCACTTACCCTTGCTCTCTAGTATTAAGGGTTTAGCCTTTAC-CT
131 TTTAGCGGGCAATTTATATACAACTTACCCTTGCTCTCTAGTATTGAGGGTTTAGCCTTTACTC-
* *
9519857 TGTCACTCAAAATTAGCTCAAATCAAACATCTCTTTAAT---C--AAC--TT---A-ATA-A--T
195 TGTCACTCAAAATTAGCTCAAATAAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTT
* * * * *
9519908 -T----AA---GAACATA-CTATAGAAACACTGGAGTAATAAGTAAATTCAACGGTCTCAAGGTC
260 ATCAAAAATTTGAACA-ACCTGTAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTC
* ** * *
9519964 ATCTTCAGTCTTAAATTTTCTTGCATATCCTCTAAACATAAGAATAAATTGCTCTAAATCATTAA
324 CTCTTCAGTCTTAAATTTTCTTGCATATCCTCTAAACATATCAGTAGATTGCTCTAAATCATTAA
*
9520029 CTTCAATTTTTAAACGATCAATCTGTTG-CCACATCTTAGCTTCTTTCTCATTAAGAGGTTGGGC
389 CTTCAATTTTTAAACGATCAATCTG-TGACCACATCTTAGCTTCTTTCTCATTAAGAGGTGGGGC
*
9520093 ATTCCTCCCACCTACTATAGGATAATCTCCTACAACTCCAACTTTTATAGAGCAAAATACTAAAA
453 ATTCCTCCCACCTACTATAGGATAATCTCCTACAACTCCAACTTTTCTAGAGCAAAATACTAAAA
* * * * * *
9520158 TTTTCTTTACTTTGTTTTGGTAAAGTTCAATTTCAATATTCTTTTTAGCATTATTAGTCCGTACC
518 TTCTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACC
* * *
9520223 CTTACTTTTAACTTCATCTTGAAACTTAAAATCCGTTGTTCAATATGATCTTATACTCTC-ACCA
583 CTTACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGATGATCTTATACTCTCGA-CA
* * * *
9520287 TCGAACACAACCACATTTCAAATTTACGTTAGTATGGAGCATCATTAACAATTAAATCACCTAAC
647 TCTAACACAACCACATTTCAAATTTACGTTAGTAAGGAGCATCGTTAACAATTAAATCACATAAC
* ** * *
9520352 CATACCAAATTGGTAATATTGACATCCTAGTCGAATGTACACATTTTTAACATAAAACAGAATCG
712 CATACCAGATCAGTAATATTGACAT-CTAGTGGCATGTACACATTTTTAACATAAAACAGAATCG
** * * * * *
9520417 GTTTAAGTTGAGAATTAACTAAACATGTAGCTATGATATAAATAAATTTAACACACTTAACTCAT
776 GTTTAAGTTGAGAATCGACTAAACCTGTAGCTATGATACAAATAAATGTAACACCCTTAACTCGT
* * * * * * *
9520482 ATATGTATTTTAATACAAGTTAAAGATCTCAAATTGACTTTTATGACATTACATACTCGAAAACC
841 ATATGTATTTAAATACAAGTTAAAGATGTCACACTGACTTTTATAACTTTATATACTCGAAAACC
*
9520547 CATAAAATTTTGTTTCATTTTAAAATTTCAATTTATCCATTTAAACAAATTTAATTATTCATGTA
906 CATAAAATTTTGTTTCATTTTAAAATTTCAATTTATCCATATAAACAAATTTAATTATTCATGTA
*
9520612 CAAACATAAA
971 AAAACATAAA
* *
9520622 AATAACTTTATTTAATAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCTAACTTAT
1 AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
* **
9520687 TATGAATTCTTTGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
66 TCTGAATTCTCCGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
* * * * *
9520752 ATTAGCGGGCAATTTGTATACCACTTACCCTTGTTCTCTAGTATTGAGGGTTTAGCCTTTACTTT
131 TTTAGCGGGCAATTTATATACAACTTACCCTTGCTCTCTAGTATTGAGGGTTTAGCCTTTACTCT
* *
9520817 GTCACTAAAAATTAGCTCAAATCAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTTA
196 GTCACTCAAAATTAGCTCAAATAAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTTA
* * *
9520882 TCAAAAATTTGAACATCCTGCAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTCCC
261 TCAAAAATTTGAACAACCTGTAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTCCT
* * *
9520947 CTTCAGTCTTAACTTTTTTTTGCATATCCTCTAGACATATCAGTAGATTGCTCTAAATCATTAAC
326 CTTCAGTCTTAA-ATTTTCTTGCATATCCTCTAAACATATCAGTAGATTGCTCTAAATCATTAAC
* ***** *
9521012 TTCAATTTTTAAACGCTCAATCTGTGACCACATCTTAGCTTCTTTCTCATTAAGAGACAATGTAT
390 TTCAATTTTTAAACGATCAATCTGTGACCACATCTTAGCTTCTTTCTCATTAAGAGGTGGGGCAT
* * * *
9521077 TCCTCCCACATACTATAGGACAATCTCCTATAACTCCAACTTTTTCTAGAGAAAAATACTAAAAT
455 TCCTCCCACCTACTATAGGATAATCTCCTACAACTCCAAC-TTTTCTAGAGCAAAATACTAAAAT
*
9521142 TCTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGAATTATTAGTTCTTACCC
519 TCTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACCC
*
9521207 TTACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGGTGATCTTATACTCTCGACATC
584 TTACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGATGATCTTATACTCTCGACATC
* * *
9521272 TAACACAACCATATTTGAAATTTACATTAGTAAGGAGCATCGTTAACAATTAAATCACCA-AACC
649 TAACACAACCACATTTCAAATTTACGTTAGTAAGGAGCATCGTTAACAATTAAATCA-CATAACC
**
9521336 ATACCAGATCAGTAATATTGACATCTTAGTGGCATGTACACATTTTTAACATAAAACAGGCTCGG
713 ATACCAGATCAGTAATATTGACATC-TAGTGGCATGTACACATTTTTAACATAAAACAGAATCGG
* * * * *
9521401 TTTAAGTTGAGAATCGACTAAATCTGTAGCTATAATACGAGTAAATGTAACACCCTTAACTAGTA
777 TTTAAGTTGAGAATCGACTAAACCTGTAGCTATGATACAAATAAATGTAACACCCTTAACTCGTA
*
9521466 TATGTATTTAAATACATGTTAAAGATGTCACACTGACTTTTATAACTTTACT-TACTCGAAAACC
842 TATGTATTTAAATACAAGTTAAAGATGTCACACTGACTTTTATAACTTTA-TATACTCGAAAACC
* * * *
9521530 CATAAAA-TTTATTTCATTTTAAAATTTCAATTTATTCATGTAAAAAAATTTAATTATTCATGTA
906 CATAAAATTTTGTTTCATTTTAAAATTTCAATTTATCCATATAAACAAATTTAATTATTCATGTA
9521594 AAAACATAAA
971 AAAACATAAA
*
9521604 AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAATTTAT
1 AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
* * * * *
9521669 TCTGAATTCTCTGAATGATGAAATAATTTCATCATATTCAGTAAGAATTTAACTCGCTTTGAACT
66 TCTGAATTCTCCGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
* * *
9521734 TTTAGCAGGAAATTTATATACAACTTACCCTTGCTCTCT-GTTATTGAGGGTTTAGACTTTACTC
131 TTTAGCGGGCAATTTATATACAACTTACCCTTGCTCTCTAG-TATTGAGGGTTTAGCCTTTACTC
* * * * *
9521798 TATCACTCAAAATTAGCTCAAATAAAAAATATCTTTAATCAACTTAACAATTAACTTATGTGTTT
195 TGTCACTCAAAATTAGCTCAAATAAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTT
* * * * * *
9521863 ATAAAAAATTTGAGCATCATGTAGAAACCCTGGAGTCATCGGTAAATTCAATGATCTCAAGGTCC
260 ATCAAAAATTTGAACAACCTGTAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTCC
* * * * *
9521928 TCTTCAGTCTTAAATTTTCATGCATATCTTCTAAACATATCAGTATATTTCTCCAAATCATTAAC
325 TCTTCAGTCTTAAATTTTCTTGCATATCCTCTAAACATATCAGTAGATTGCTCTAAATCATTAAC
* * * * *
9521993 TTCAAATTTTAAACGATCAATCTGTGACCACATCTTAGCTTCGTTCTCATTAAGAGGTGGCGTAG
390 TTCAATTTTTAAACGATCAATCTGTGACCACATCTTAGCTTCTTTCTCATTAAGAGGTGGGGCAT
* *
9522058 TCCTCCCACCTACTATAGGATAATCTCCTGCAACTCTAACTTTTCTAGAGCAAAATACTAAAATT
455 TCCTCCCACCTACTATAGGATAATCTCCTACAACTCCAACTTTTCTAGAGCAAAATACTAAAATT
* * * *
9522123 CTCTTTAGTTTGGTTTGGTAAATTTCAATTTCAATTTTCTTTTTAGCATTATTAGTTCATACCCT
520 CTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACCCT
* * * * *
9522188 TACTTTCAGCTTCATCTTGAAAATTAAAATCTATTTTTCAAGATGATCTTATACCCTCGACATCT
585 TACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGATGATCTTATACTCTCGACATCT
* * *
9522253 AACACAACCACATTTCAAATTTATGTTAGTAAAGAGCATCGTTAACAATTAAATCACATAGCCAT
650 AACACAACCACATTTCAAATTTACGTTAGTAAGGAGCATCGTTAACAATTAAATCACATAACCAT
* * *
9522318 ACCAGATCAGTAATATTGACATTCTAGTGGCATG-AGCACA-TTTTAACACAAAACATACTCGGT
715 ACCAGATCAGTAATATTGACA-TCTAGTGGCATGTA-CACATTTTTAACATAAAACAGAATCGGT
* * * *
9522381 CTAAGTTGAGAATCGACTAAACCTGTAGCTCTGATACCAATAAATGTAACACCCTTAACTCGCAT
778 TTAAGTTGAGAATCGACTAAACCTGTAGCTATGATACAAATAAATGTAACACCCTTAACTCGTAT
**
9522446 ATGTATTTAAATACAAGTTAAAGATGTCACACTGACTTTTATAACTTTATATACTCGAAAAATCA
843 ATGTATTTAAATACAAGTTAAAGATGTCACACTGACTTTTATAACTTTATATACTCGAAAACCCA
* *
9522511 TAAAATTTTGTTTCATTTT-AAATTTCAATTTATCCATATAAACAAATTTAATTTTTCACGTAAA
908 TAAAATTTTGTTTCATTTTAAAATTTCAATTTATCCATATAAACAAATTTAATTATTCATGTAAA
9522575 AACATAAA
973 AACATAAA
* *
9522583 AATAACTTTATTTAACAGACTAATATTACCTGATAAGTAAATAATTGCTCTGCATTCAAACTTAT
1 AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
* * * *
9522648 TCTGAATTATCCGAAGGATGAAATAATTTCATCATATTCATTAAGAATTT-ACTCGCTTTGAACT
66 TCTGAATTCTCCGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
* * *
9522712 TTTAGCGGGCAATTTATATACAACTTATCCTTGCACTCTGGTATTGAGGGTTTAGCCTTTACTCT
131 TTTAGCGGGCAATTTATATACAACTTACCCTTGCTCTCTAGTATTGAGGGTTTAGCCTTTACTCT
*
9522777 GTCACT-AATAATTAGCTCAAATAAAAAATCTATTTAATCAACTTAACAATTAACATATATATTT
196 GTCACTCAA-AATTAGCTCAAATAAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTT
* *
9522841 ATCAAAATTTTGAACAACCTGTAGAAACCCTGGAGTCATCAGTATATTCAACGATCTCAAGGTCC
260 ATCAAAAATTTGAACAACCTGTAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTCC
* * * * *
9522906 TCTTCATTCTTAAATTTTCTTGCACATCCTGTAAACATATCAGTAGATTGATCTAAATAATTAAC
325 TCTTCAGTCTTAAATTTTCTTGCATATCCTCTAAACATATCAGTAGATTGCTCTAAATCATTAAC
* * *
9522971 TTCAATTTTTAAACGATCAATCTGTGACCGCATCTTAACTTCTTTATCATTAAGAGGTGGGGCAT
390 TTCAATTTTTAAACGATCAATCTGTGACCACATCTTAGCTTCTTTCTCATTAAGAGGTGGGGCAT
* * *
9523036 TCCTCCCACCCACTATATGATAATCTCCTACAAATCCAACTTTTCTAGAGCAAAATACTAAAATT
455 TCCTCCCACCTACTATAGGATAATCTCCTACAACTCCAACTTTTCTAGAGCAAAATACTAAAATT
9523101 CTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACCCT
520 CTCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACCCT
*
9523166 TACTTTTAGCTTCATCTTGAAACTAAAAATCCATTGTTCAAGATGATCTTATACTCTCGACATCT
585 TACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGATGATCTTATACTCTCGACATCT
* * * * * * *
9523231 AATACATCCACATTTCAAATTTATGTTAGTAAGGAGCATTGTTAACTACTAAATCACCTAACCAT
650 AACACAACCACATTTCAAATTTACGTTAGTAAGGAGCATCGTTAACAATTAAATCACATAACCAT
*
9523296 ACCAGATCAGTAATATTGACATCTAAGTGGCATATACACATTTTTAACATAAAACAGAATCGGTT
715 ACCAGATCAGTAATATTGACATCT-AGTGGCATGTACACATTTTTAACATAAAACAGAATCGGTT
9523361 TAAGTTGA
779 TAAGTTGA
9523369 TGATGCAAGC
Statistics
Matches: 2442, Mismatches: 263, Indels: 64
0.88 0.09 0.02
Matches are distributed among these distances:
959 210 0.09
962 1 0.00
964 3 0.00
966 2 0.00
969 1 0.00
970 3 0.00
971 1 0.00
973 1 0.00
974 1 0.00
977 5 0.00
978 569 0.23
979 331 0.14
980 246 0.10
981 197 0.08
982 504 0.21
983 365 0.15
984 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (980 bp):
AATAACTTTATTTAACAGTCTAATATTACCTGATAAGTAAATAACTGCTCTGCATTCAAACTTAT
TCTGAATTCTCCGAAGGATGAAATAATTTCATCAGATTCACTAAGAATTTAACTCGCTTTAAACT
TTTAGCGGGCAATTTATATACAACTTACCCTTGCTCTCTAGTATTGAGGGTTTAGCCTTTACTCT
GTCACTCAAAATTAGCTCAAATAAAAAATCTCTTTAATCAACTTAACAATTAACATATATATTTA
TCAAAAATTTGAACAACCTGTAGAAACCCTGGAGTCATCAGTAAATTCAACGATCTCAAGGTCCT
CTTCAGTCTTAAATTTTCTTGCATATCCTCTAAACATATCAGTAGATTGCTCTAAATCATTAACT
TCAATTTTTAAACGATCAATCTGTGACCACATCTTAGCTTCTTTCTCATTAAGAGGTGGGGCATT
CCTCCCACCTACTATAGGATAATCTCCTACAACTCCAACTTTTCTAGAGCAAAATACTAAAATTC
TCTCTAGTTTGTTTTGGTAAATTTCAATTTCAATATTCTTTTTAGCATTATTAGTTCTTACCCTT
ACTTTTAGCTTCATCTTGAAACTTAAAATCCATTGTTCAAGATGATCTTATACTCTCGACATCTA
ACACAACCACATTTCAAATTTACGTTAGTAAGGAGCATCGTTAACAATTAAATCACATAACCATA
CCAGATCAGTAATATTGACATCTAGTGGCATGTACACATTTTTAACATAAAACAGAATCGGTTTA
AGTTGAGAATCGACTAAACCTGTAGCTATGATACAAATAAATGTAACACCCTTAACTCGTATATG
TATTTAAATACAAGTTAAAGATGTCACACTGACTTTTATAACTTTATATACTCGAAAACCCATAA
AATTTTGTTTCATTTTAAAATTTCAATTTATCCATATAAACAAATTTAATTATTCATGTAAAAAC
ATAAA
Found at i:9529102 original size:22 final size:24
Alignment explanation
Indices: 9529059--9529103 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
9529049 TTTCATTTTA
*
9529059 AAATTTCAATTTATCCATGTAAAC
1 AAATTTCAATTTATCCACGTAAAC
*
9529083 AAATTT-AA-TTATTCACGTAAA
1 AAATTTCAATTTATCCACGTAAA
9529104 AACATAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 2 0.11
24 6 0.32
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATTTCAATTTATCCACGTAAAC
Found at i:9537823 original size:22 final size:24
Alignment explanation
Indices: 9537780--9537823 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
9537770 TTCATTTTAA
*
9537780 AATTTAAATTTATCCATGTAAACC
1 AATTTAAATTTATCCATATAAACC
*
9537804 AATTT-AA-TTATTCATATAAA
1 AATTTAAATTTATCCATATAAA
9537824 AACATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
23 2 0.11
24 5 0.28
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.41
Consensus pattern (24 bp):
AATTTAAATTTATCCATATAAACC
Found at i:9543414 original size:22 final size:22
Alignment explanation
Indices: 9543372--9543414 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9543362 GCTACTTATT
*
9543372 ATATATGATGTTTATTATGAAC
1 ATATATGATGTTTAATATGAAC
*
9543394 ATATATGATGTTTAATGTGAA
1 ATATATGATGTTTAATATGAA
9543415 TGTTATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.44
Consensus pattern (22 bp):
ATATATGATGTTTAATATGAAC
Found at i:9555390 original size:167 final size:167
Alignment explanation
Indices: 9555114--9555447 Score: 598
Period size: 167 Copynumber: 2.0 Consensus size: 167
9555104 CTTTGAAGGT
9555114 AGTGCAAACTTCCTGAATATGAAATACTGATAAAAATTGGGATCGAACCAAATCAAAAGGAAAGG
1 AGTGCAAACTTCCTGAATATGAAATACTGATAAAAATTGGGATCGAACCAAATCAAAAGGAAAGG
* *
9555179 ATTAAGTTAAAGCTTAGTGAGGCTTATATTTTGACTTGTATATGATGTCAAAGTGAGTGA-AATT
66 ATTAAGTTAAAGCTTAGTGAGGCTTATATTTTGACTTGTATATGACGTCAAAGTGAGT-ACAATC
9555243 CATGTATAATATTATACATGGATGTTTCATACATCATG
130 CATGTATAATATTATACATGGATGTTTCATACATCATG
* * *
9555281 AGTGCAAACTTCCTGAATATGAACTATTGATAAAAATTGGGATCGAACCAGATCAAAAGGAAAGG
1 AGTGCAAACTTCCTGAATATGAAATACTGATAAAAATTGGGATCGAACCAAATCAAAAGGAAAGG
*
9555346 ATTAAGTTCAAGCTTAGTGAGGCTTATATTTTGACTTGTATATGACGTCAAAGTGAGTACAATCC
66 ATTAAGTTAAAGCTTAGTGAGGCTTATATTTTGACTTGTATATGACGTCAAAGTGAGTACAATCC
9555411 ATGTATAATATTATACATGGATGTTTCATACATCATG
131 ATGTATAATATTATACATGGATGTTTCATACATCATG
9555448 GGGTATGACT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
166 1 0.01
167 159 0.99
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (167 bp):
AGTGCAAACTTCCTGAATATGAAATACTGATAAAAATTGGGATCGAACCAAATCAAAAGGAAAGG
ATTAAGTTAAAGCTTAGTGAGGCTTATATTTTGACTTGTATATGACGTCAAAGTGAGTACAATCC
ATGTATAATATTATACATGGATGTTTCATACATCATG
Found at i:9563099 original size:39 final size:39
Alignment explanation
Indices: 9563044--9563251 Score: 175
Period size: 39 Copynumber: 5.3 Consensus size: 39
9563034 GCATATTAAA
* * *
9563044 TAAGCACTTTAGTGCAAATGGTGGACACAACCTTATGCG
1 TAAGCACTTTGGTGCAAATGGTGAACGCAACCTTATGCG
* * * * * *
9563083 GAAGCACTTTGGTGCAAATCGTGGATGCAAGCTTGTGCG
1 TAAGCACTTTGGTGCAAATGGTGAACGCAACCTTATGCG
* * * * *
9563122 CAAGCACTTCGGTCCAAATGGTGAATGCAACCTTACGCG
1 TAAGCACTTTGGTGCAAATGGTGAACGCAACCTTATGCG
* ** * * *
9563161 TAAACA-TTTCTATGCAAATGGTGAACTCAACGTTATACG
1 TAAGCACTTT-GGTGCAAATGGTGAACGCAACCTTATGCG
* ** * *
9563200 TAAGAACTTCAGTGCAAATGGTGTACGCAACCTTGTGCG
1 TAAGCACTTTGGTGCAAATGGTGAACGCAACCTTATGCG
9563239 TAAGCACTTTGGT
1 TAAGCACTTTGGT
9563252 CTGACACGCA
Statistics
Matches: 128, Mismatches: 39, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
38 2 0.02
39 124 0.97
40 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (39 bp):
TAAGCACTTTGGTGCAAATGGTGAACGCAACCTTATGCG
Found at i:9574492 original size:17 final size:16
Alignment explanation
Indices: 9574454--9574494 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
9574444 TAATACCTCA
9574454 ATAGATTA-ATAAACC
1 ATAGATTACATAAACC
*
9574469 A-AGATTACATAAGACT
1 ATAGATTACATAA-ACC
9574485 ATAGATTACA
1 ATAGATTACA
9574495 AATAAACACC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 6 0.27
15 5 0.23
16 3 0.14
17 8 0.36
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (16 bp):
ATAGATTACATAAACC
Found at i:9584253 original size:59 final size:59
Alignment explanation
Indices: 9584119--9584254 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 59
9584109 TATACACTGA
* * * *
9584119 AGTGCTAAATCGAATATGACACATAAGGTTATGCCCACCATATGCAGTAGGTATCCTTT
1 AGTGCTAAACCGAATATGACACATAAAGTTATGCCCACCATATACACTAGGTATCCTTT
* * * *
9584178 AGTGCTAACCCAAATATGACACATAAAGTCT-TGCCCACCATCTACCCTAGGTATCCTTT
1 AGTGCTAAACCGAATATGACACATAAAGT-TATGCCCACCATATACACTAGGTATCCTTT
*
9584237 AGTGC-AATACTGAATATG
1 AGTGCTAA-ACCGAATATG
9584255 CAGCATGCTA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
58 2 0.03
59 61 0.95
60 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (59 bp):
AGTGCTAAACCGAATATGACACATAAAGTTATGCCCACCATATACACTAGGTATCCTTT
Found at i:9588087 original size:244 final size:245
Alignment explanation
Indices: 9587658--9588149 Score: 977
Period size: 244 Copynumber: 2.0 Consensus size: 245
9587648 GATGGGATCA
9587658 CCTTTCCAATATGCCCAATCAAAAGAAGACGAGCCAAGCTACTCAAAGATTAACTCCATATTACA
1 CCTTTCCAATATGCCCAATCAAAAGAAGACGAGCCAAGCTACTCAAAGATTAACTCCATATTACA
9587723 GTCTGGGCCTTCGTCAGTAGAGGCCTACATGCCCGTATGAAGCTTGAAGAATTCAAGGTAGAAAA
66 GTCTGGGCCTTCGTCAGTAGAGGCCTACATGCCCGTATGAAGCTTGAAGAATTCAAGGTAGAAAA
9587788 ATACCTCATCATTCCTCCTAATTCAACTTGGATCACAACAAACCAAGTTACTTCTAGGCCCAATT
131 ATACCTCATCATTCCTCCTAATTCAACTTGGATCACAACAAACCAAGTTACTTCTAGGCCCAATT
9587853 GCAAGACCCAAGAATATATGCCCAAAAATGAGTTTAAACCCC-TTAAGTC
196 GCAAGACCCAAGAATATATGCCCAAAAATGAGTTTAAACCCCTTTAAGTC
9587902 CCTTTCCAATATGCCCAATCAAAAGAAGACGAGCCAAGCTACTCAAAGATTAACTCCATATTACA
1 CCTTTCCAATATGCCCAATCAAAAGAAGACGAGCCAAGCTACTCAAAGATTAACTCCATATTACA
9587967 GTCTGGGCCTTCGTCAGTAGAGGCCTACATGCCCGTATGAAGCTTGAAGAATTCAAGGTAGAAAA
66 GTCTGGGCCTTCGTCAGTAGAGGCCTACATGCCCGTATGAAGCTTGAAGAATTCAAGGTAGAAAA
9588032 ATACCTCATCATTCCTCCTAATTCAACTTGGATCACAACAAACCAAGTTACTTCTAGGCCCAATT
131 ATACCTCATCATTCCTCCTAATTCAACTTGGATCACAACAAACCAAGTTACTTCTAGGCCCAATT
9588097 GCAAGACCCAAGAATATATGCCCAAAAATGAGTTTAAACCCCTTTAAGTC
196 GCAAGACCCAAGAATATATGCCCAAAAATGAGTTTAAACCCCTTTAAGTC
9588147 CCT
1 CCT
9588150 AAACTTGTAT
Statistics
Matches: 247, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
244 237 0.96
245 10 0.04
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (245 bp):
CCTTTCCAATATGCCCAATCAAAAGAAGACGAGCCAAGCTACTCAAAGATTAACTCCATATTACA
GTCTGGGCCTTCGTCAGTAGAGGCCTACATGCCCGTATGAAGCTTGAAGAATTCAAGGTAGAAAA
ATACCTCATCATTCCTCCTAATTCAACTTGGATCACAACAAACCAAGTTACTTCTAGGCCCAATT
GCAAGACCCAAGAATATATGCCCAAAAATGAGTTTAAACCCCTTTAAGTC
Found at i:9589345 original size:17 final size:17
Alignment explanation
Indices: 9589323--9589361 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
9589313 GAATGATCCA
9589323 ATCGATACTTTTTAAGC
1 ATCGATACTTTTTAAGC
9589340 ATCGATACTTTTTAAGC
1 ATCGATACTTTTTAAGC
9589357 ATCGA
1 ATCGA
9589362 CACATGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (17 bp):
ATCGATACTTTTTAAGC
Found at i:9591337 original size:17 final size:17
Alignment explanation
Indices: 9591315--9591353 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
9591305 GAATGATCCA
9591315 ATCGATACTTTTTAAGC
1 ATCGATACTTTTTAAGC
9591332 ATCGATACTTTTTAAGC
1 ATCGATACTTTTTAAGC
9591349 ATCGA
1 ATCGA
9591354 CACATGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (17 bp):
ATCGATACTTTTTAAGC
Found at i:9595107 original size:44 final size:44
Alignment explanation
Indices: 9594978--9595240 Score: 400
Period size: 44 Copynumber: 5.9 Consensus size: 44
9594968 ATTTCTTATT
* * *
9594978 AATATACATACCATTTAATCCATAAGCTCGTAAGTTTATTTTACC
1 AATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTACC
* * *
9595023 AATATAGTTACCATTAAATCTATAAGCTCGTAAGCTTATTTTACC
1 AATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTACC
9595068 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
1 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
9595112 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
1 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
9595156 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
1 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
** * * * *
9595200 AATATACTTATTATAATTTCATAGGCTTGTAAGCTTATTTT
1 AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTT
9595241 CGATCTATCT
Statistics
Matches: 204, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
44 152 0.75
45 52 0.25
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (44 bp):
AATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTACC
Found at i:9600331 original size:22 final size:22
Alignment explanation
Indices: 9600306--9600350 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
9600296 TAAGGTATCA
*
9600306 AGTCAAGTTCGAATTCGAGTAG
1 AGTCAAGCTCGAATTCGAGTAG
9600328 AGTCAAGCTCGAATTCGAGTAG
1 AGTCAAGCTCGAATTCGAGTAG
9600350 A
1 A
9600351 ACCATCCCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (22 bp):
AGTCAAGCTCGAATTCGAGTAG
Found at i:9600747 original size:24 final size:24
Alignment explanation
Indices: 9600720--9600774 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
9600710 CGTTCATTTA
*
9600720 CGTTCGTGAACGTTCGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
* **
9600744 CGTTTATGTTCGTTCGGTTATGTT
1 CGTTCATGAACGTTCGGTTATGTT
9600768 CGTTCAT
1 CGTTCAT
9600775 TTATGTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.11, C:0.16, G:0.25, T:0.47
Consensus pattern (24 bp):
CGTTCATGAACGTTCGGTTATGTT
Found at i:9600758 original size:14 final size:14
Alignment explanation
Indices: 9600741--9600781 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
9600731 GTTCGGTTAT
9600741 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
*
9600755 GTTCGGTTATGTTC
1 GTTCGTTTATGTTC
*
9600769 GTTCATTTATGTT
1 GTTCGTTTATGTT
9600782 TAACCCAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.10, C:0.12, G:0.22, T:0.56
Consensus pattern (14 bp):
GTTCGTTTATGTTC
Found at i:9601888 original size:16 final size:16
Alignment explanation
Indices: 9601863--9601923 Score: 95
Period size: 16 Copynumber: 3.8 Consensus size: 16
9601853 AACGTTTATC
9601863 TTCGTTTATGTTCGTG
1 TTCGTTTATGTTCGTG
**
9601879 TTTATTTATGTTCGTG
1 TTCGTTTATGTTCGTG
*
9601895 TTCGTTTATGTTCATG
1 TTCGTTTATGTTCGTG
9601911 TTCGTTTATGTTC
1 TTCGTTTATGTTC
9601924 ATTTATTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.10, C:0.11, G:0.20, T:0.59
Consensus pattern (16 bp):
TTCGTTTATGTTCGTG
Found at i:9602015 original size:16 final size:16
Alignment explanation
Indices: 9601994--9602026 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9601984 AAAAAAAATT
9601994 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
9602010 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
9602026 T
1 T
9602027 TTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:9602656 original size:2 final size:2
Alignment explanation
Indices: 9602649--9602686 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
9602639 TTATACATAC
9602649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9602687 TAATTTATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9611622 original size:31 final size:31
Alignment explanation
Indices: 9611584--9611642 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
9611574 AAAATGTAAA
*
9611584 CAATTATACAAAAGGTCTATAAGATACAACT
1 CAATTATACAAAAGATCTATAAGATACAACT
* * *
9611615 CAATTATACCAAAGATTTATCAGATACA
1 CAATTATACAAAAGATCTATAAGATACA
9611643 TTCCCTCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.27
Consensus pattern (31 bp):
CAATTATACAAAAGATCTATAAGATACAACT
Found at i:9625990 original size:20 final size:20
Alignment explanation
Indices: 9625965--9626010 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
9625955 CATCGGTACT
9625965 GATACT-AACCCTTCAGTATC
1 GATACTGAACCCTT-AGTATC
9625985 GATACTGAACCCTTAGTATC
1 GATACTGAACCCTTAGTATC
9626005 GATACT
1 GATACT
9626011 CACCTACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (20 bp):
GATACTGAACCCTTAGTATC
Found at i:9628801 original size:22 final size:22
Alignment explanation
Indices: 9628757--9628797 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
9628747 TATTTTCCAG
*
9628757 AAAAAAGGATTAATCTCTTTGA
1 AAAAAAGGATCAATCTCTTTGA
*
9628779 AAAAAAGG-TCAATTTCTTT
1 AAAAAAGGATCAATCTCTTT
9628798 TGAAGATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (22 bp):
AAAAAAGGATCAATCTCTTTGA
Found at i:9628820 original size:21 final size:20
Alignment explanation
Indices: 9628794--9628864 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
9628784 AGGTCAATTT
*
9628794 CTTTTGAAGATGGATCGATCC
1 CTTTTGAA-ATGGATCAATCC
*
9628815 CTTTTGAAAAAGGATCAAT-C
1 CTTTTG-AAATGGATCAATCC
* * *
9628835 CATTAGAAATGAGATCCATCC
1 CTTTTGAAATG-GATCAATCC
9628856 CTTTTGAAA
1 CTTTTGAAA
9628865 CTTTTCATAC
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 4 0.10
20 11 0.28
21 22 0.56
22 2 0.05
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (20 bp):
CTTTTGAAATGGATCAATCC
Found at i:9631540 original size:20 final size:20
Alignment explanation
Indices: 9631515--9631556 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
9631505 TTACATACTC
9631515 GTGAAACCATCAAGCGCTAG
1 GTGAAACCATCAAGCGCTAG
9631535 GTGAAACCATCAAGCGCTAG
1 GTGAAACCATCAAGCGCTAG
9631555 GT
1 GT
9631557 ATACACTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (20 bp):
GTGAAACCATCAAGCGCTAG
Found at i:9632336 original size:24 final size:24
Alignment explanation
Indices: 9632305--9632354 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
9632295 ATTCACACCC
9632305 AAAATCATT-CGTAAACCATTTCAA
1 AAAATCATTACGTAAA-CATTTCAA
* *
9632329 AAAATCATTATGTAAATATTTCAA
1 AAAATCATTACGTAAACATTTCAA
9632353 AA
1 AA
9632355 TATGATTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.50, C:0.14, G:0.04, T:0.32
Consensus pattern (24 bp):
AAAATCATTACGTAAACATTTCAA
Found at i:9634800 original size:29 final size:29
Alignment explanation
Indices: 9634768--9634856 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 29
9634758 AAATTTTTTG
9634768 TTAGTGACCAAAATGTAAATTTTGAAAGT
1 TTAGTGACCAAAATGTAAATTTTGAAAGT
* * * *
9634797 TTAGTGA-CAAAGTATAAACTTGGAAAAGT
1 TTAGTGACCAAAATGTAAATTTTG-AAAGT
* *
9634826 TTAG-GAACCAAAAATGTAATTTTTAAAAGT
1 TTAGTG-ACC-AAAATGTAAATTTTGAAAGT
9634856 T
1 T
9634857 ATGTATTTTG
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
28 13 0.28
29 17 0.37
30 7 0.15
31 9 0.20
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.33
Consensus pattern (29 bp):
TTAGTGACCAAAATGTAAATTTTGAAAGT
Found at i:9638744 original size:20 final size:18
Alignment explanation
Indices: 9638719--9638769 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
9638709 TATTATGATG
*
9638719 GAAATTAATATTAGAATGTT
1 GAAATT-ATATTAAAATG-T
*
9638739 GAAATTGATGTTAAAATGT
1 GAAATT-ATATTAAAATGT
9638758 GAAATTATATTA
1 GAAATTATATTA
9638770 CTTTGGAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 5 0.19
19 7 0.26
20 15 0.56
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (18 bp):
GAAATTATATTAAAATGT
Found at i:9639951 original size:17 final size:17
Alignment explanation
Indices: 9639874--9639955 Score: 51
Period size: 17 Copynumber: 4.8 Consensus size: 17
9639864 CATTTAAATC
*
9639874 ATCTAGTTCATTTAGGGA
1 ATCTAGTTCATTTA-TGA
* *
9639892 A-GTAGTTCATTTATGC
1 ATCTAGTTCATTTATGA
* * **
9639908 ATTTAGATGTTTTA-GTA
1 ATCTAGTTCATTTATG-A
* *
9639925 AGCTACTTCATTTATGA
1 ATCTAGTTCATTTATGA
9639942 ATCTAGTTCATTTA
1 ATCTAGTTCATTTA
9639956 ATAAAGTTAT
Statistics
Matches: 45, Mismatches: 16, Indels: 7
0.66 0.24 0.10
Matches are distributed among these distances:
16 3 0.07
17 40 0.89
18 2 0.04
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (17 bp):
ATCTAGTTCATTTATGA
Found at i:9639997 original size:17 final size:17
Alignment explanation
Indices: 9639977--9640016 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
9639967 TCATTAATTT
*
9639977 AACTAGTTCATTCATCA
1 AACTAATTCATTCATCA
* *
9639994 AACTAATTCATTTATTA
1 AACTAATTCATTCATCA
9640011 AACTAA
1 AACTAA
9640017 CTTTTAATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (17 bp):
AACTAATTCATTCATCA
Found at i:9641416 original size:2 final size:2
Alignment explanation
Indices: 9641409--9641440 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9641399 GAGTTTTAAT
9641409 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9641441 CTTAGAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9643204 original size:12 final size:12
Alignment explanation
Indices: 9643187--9643228 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
9643177 ATGATATTAG
9643187 TAATAATTATAA
1 TAATAATTATAA
*
9643199 TAATAATTATAC
1 TAATAATTATAA
*
9643211 T-ATAGTATATAA
1 TAATAAT-TATAA
9643223 TAATAA
1 TAATAA
9643229 ATATTATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 4 0.17
12 17 0.71
13 3 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (12 bp):
TAATAATTATAA
Found at i:9645718 original size:17 final size:17
Alignment explanation
Indices: 9645696--9645767 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
9645686 AATTAAGAGT
9645696 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* *
9645713 TAGTTTTATGAATGAAC
1 TAGTTTAATAAATGAAC
*
9645730 TAGTTTAATTAAT-AAGC
1 TAGTTTAATAAATGAA-C
* *
9645747 TAACTTTATTAAATGAAC
1 T-AGTTTAATAAATGAAC
9645765 TAG
1 TAG
9645768 ATGCATAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
16 2 0.05
17 29 0.66
18 11 0.25
19 2 0.05
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Found at i:9645776 original size:17 final size:17
Alignment explanation
Indices: 9645756--9645817 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
9645746 CTAACTTTAT
9645756 TAAATGAACTAGATGCA
1 TAAATGAACTAGATGCA
* * *
9645773 TAAATGAAGTAGCT-TA
1 TAAATGAACTAGATGCA
*
9645789 CTAAAT-AATCTAAATGCA
1 -TAAATGAA-CTAGATGCA
9645807 TAAATGAACTA
1 TAAATGAACTA
9645818 CTTTCCTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
16 3 0.09
17 28 0.82
18 3 0.09
ACGTcount: A:0.48, C:0.11, G:0.13, T:0.27
Consensus pattern (17 bp):
TAAATGAACTAGATGCA
Found at i:9645796 original size:52 final size:52
Alignment explanation
Indices: 9645699--9645801 Score: 116
Period size: 52 Copynumber: 2.0 Consensus size: 52
9645689 TAAGAGTTAG
* ** * * *
9645699 TTTAATAAATGAACTAGTTTTATGAATGAACTAGTTTAATTAATAAGCTAAC
1 TTTAATAAATGAACTAGATGCATAAATGAACTAGCTTAATAAATAAGCTAAC
* * * *
9645751 TTTATTAAATGAACTAGATGCATAAATGAAGTAGCTTACTAAATAATCTAA
1 TTTAATAAATGAACTAGATGCATAAATGAACTAGCTTAATAAATAAGCTAA
9645802 ATGCATAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.36
Consensus pattern (52 bp):
TTTAATAAATGAACTAGATGCATAAATGAACTAGCTTAATAAATAAGCTAAC
Found at i:9646037 original size:18 final size:18
Alignment explanation
Indices: 9646014--9646055 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9646004 ATTAATGCTT
9646014 GGAACTTATTATCAAAAA
1 GGAACTTATTATCAAAAA
* *
9646032 GGAACTTCTTATCACAAA
1 GGAACTTATTATCAAAAA
*
9646050 GTAACT
1 GGAACT
9646056 CATAAACAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (18 bp):
GGAACTTATTATCAAAAA
Found at i:9648277 original size:19 final size:20
Alignment explanation
Indices: 9648224--9648278 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
9648214 CTTGGGTTAG
*
9648224 TGAAAAAAATAAAAAAAAAA
1 TGAAAAAAATAAAGAAAAAA
9648244 TTGAAAAAAGA-AAAGAAAAAA
1 -TGAAAAAA-ATAAAGAAAAAA
*
9648265 -GAAAAAATTAAAGA
1 TGAAAAAAATAAAGA
9648279 GGGAATGAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 12 0.40
21 17 0.57
22 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (20 bp):
TGAAAAAAATAAAGAAAAAA
Found at i:9650742 original size:17 final size:17
Alignment explanation
Indices: 9650702--9650773 Score: 83
Period size: 17 Copynumber: 4.2 Consensus size: 17
9650692 ATTCATGCAT
9650702 CTAGTTCATTTAA-TAAA
1 CTAGTTCA-TTAATTAAA
*
9650719 GTAAGTTCATTAATTAAA
1 CT-AGTTCATTAATTAAA
* *
9650737 CTAGTTCATTCATCAAA
1 CTAGTTCATTAATTAAA
*
9650754 CTAGTTCATTTATTAAA
1 CTAGTTCATTAATTAAA
9650771 CTA
1 CTA
9650774 ACTCTTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
17 36 0.77
18 11 0.23
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (17 bp):
CTAGTTCATTAATTAAA
Found at i:9653980 original size:729 final size:729
Alignment explanation
Indices: 9652581--9655216 Score: 3523
Period size: 730 Copynumber: 3.6 Consensus size: 729
9652571 TGATTTTTGT
* ** * * * * * *
9652581 AACCAATCACATCTGTATCGTATCCAGAATTGGATGACATTCTGACTGATATACATGCATCTAAT
1 AACCAAGCACATCTGTATCACATCCAGAATTGGAAGACATTCTGATTGATATTCTTGCATATGAT
* * * * * * *
9652646 GAAACCGTTCAACTTCTCTCACGCACCTAGACACAAAGGTGAACATTATTCAATATCTTAATTAA
66 GAAACTGTTCAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
* *
9652711 AAACATGCATGAAACAATTAAGGGTTAG-TT--T-AAT-AA--A------TGAAT--A--AGTTT
131 AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGGTGAATGAATTAGTTT
* * * ** * *
9652759 AATTAATGAGCTAACTTTATTAACTGAACTAGA-GACACAAATGAAGTAGTTTACTAAATATTCT
196 AATTAATGAGCTAACTTTATTAAATGAACTAGATG-CATAAATAAAGTAACTTACTAAAAAATCT
* *
9652823 AAATGCATAAATTAACTACTTCCATAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATG
260 AAATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATG
* * * * *
9652888 AACATCACACTTATTAAATGCTATTAATGTTATGAAAACTTCAAATTCTCATGTAAATTCATGCA
325 AACAACACACTTATTAAATGCAATTAATGTTATGAAAACATCAAATTCTCATGCAAATTCTTGCA
* * *
9652953 TAAACAACGTAAAGAGTTCCTCCCTTATTATTACC-CATTCCTCACATCCCAAGCTTGATGTAAA
390 TAAGCAACGTAAAGAGTTCCTCCCTTATTATT-CCTCATTCCTCACATCCCAAACTTAATGTAAA
* * * *
9653017 CATACTTTCCAT-GACTGCTTGGAACTTCTTATCACAAAGGAACAT-ATAAACAAGTAAAAATAA
454 CATACTTTCCATGGA-TGCTTGGAACTCCTTATAACAAAGGAAC-TCATAAAAAAGTAAAAACAA
*
9653080 GATGAAGTAAGGTAGAACTCCTTTAGAGTTAGCCTTAATGATCTTCCATGGTGTGATCAAACAAT
517 GATGAAGTAAGGTAGAACTCCCTTAGAGTTAGCCTTAATGATCTTCCATGGTGTGATCAAACAAT
* *
9653145 GGAGAAAATGGATGCTGAT-AAGGATCATATCATCCCCTCCCTCTTTAAAGCGATTTGTCCCCAA
582 GGAGAAAATGGATGTTGATCAAGGATCATATCATCCCCTCCCTCTTTAAAGTGATTTGTCCCCAA
* * * **
9653209 ATCAACACTTGCAACAAACAAGAAAAATTTTGATTTCCTTTGGATGGCGAACTAATTCACTTTTG
647 ATCAACACTTGCAACAAACGAGAACAATTTTGATTTCCTTTGG-CGG-GAACTGCTTCACTTTTG
*
9653274 ATATACACAAAACCCATTCC
710 ATATACACAAAACCCATTCA
* * * *
9653294 AACCAAGCACATCTGTATCGCATCCATAAATGGAAGATATTCTGATTGATATTCTTGCATATGAT
1 AACCAAGCACATCTGTATCACATCCAGAATTGGAAGACATTCTGATTGATATTCTTGCATATGAT
* *
9653359 GAAACTATTCAACTTCCCTCGTGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
66 GAAACTGTTCAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
* * * * *
9653424 AAACATGCACGAAACAATTAAGAGATAGTTTAAAAAATGAACTTGTTTGGTGAATGAATTAGTTT
131 AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGGTGAATGAATTAGTTT
* ** * *
9653489 AATTAATGAGCTAACTTTATTAAATGAAC-AAATGCATAAATGGAGTAACATACTAAAAAATTTA
196 AATTAATGAGCTAACTTTATTAAATGAACTAGATGCATAAATAAAGTAACTTACTAAAAAATCTA
* * *
9653553 AATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCTTTCTTAAAAGA
261 AATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATGA
* * *
9653618 ACAACACACTTATTAATTGGAATTAATGTTATGAAAACATCAGATTCTCATGCAAATTCTTGCAT
326 ACAACACACTTATTAAATGCAATTAATGTTATGAAAACATCAAATTCTCATGCAAATTCTTGCAT
* **
9653683 AAGCAACGTAAAGTGTTCCTCCCTTATTATTCCTCATTCCTCATGTCCCAAACTTAATGTAAACA
391 AAGCAACGTAAAGAGTTCCTCCCTTATTATTCCTCATTCCTCACATCCCAAACTTAATGTAAACA
* * * *
9653748 TACTTTCCATGGATGGTTGGAACTCCTTATAAAAAATGAACTCATAAAAAAGTAAAAACAAGAAG
456 TACTTTCCATGGATGCTTGGAACTCCTTATAACAAAGGAACTCATAAAAAAGTAAAAACAAGATG
* * *
9653813 AAGTAAGGTAGAACTCCCTTAGAGATAGCCTTAATGATCTTCCATGGTCTGATC-AACAATAGAG
521 AAGTAAGGTAGAACTCCCTTAGAGTTAGCCTTAATGATCTTCCATGGTGTGATCAAACAATGGAG
* * * *
9653877 AAAATGGATGTTGATCAAGG-TAATATCATCCGCTCCCTCATTAAAGTGATTTATCCCCAAATCA
586 AAAATGGATGTTGATCAAGGATCATATCATCCCCTCCCTCTTTAAAGTGATTTGTCCCCAAATCA
* * * * *
9653941 AGACTTACTACAAACGAGAACAATTTTGATTTCCCTTTGGCGGGAAATGCTTCACTCTTGATATA
651 ACACTTGCAACAAACGAGAACAATTTTGATTT-CCTTTGGCGGGAACTGCTTCACTTTTGATATA
9654006 CACAAAACCCATTCA
715 CACAAAACCCATTCA
* * * * *
9654021 AACCAAGAACATCTGTATCACATCGAGAATTGAAAGACATTCTGACTGATATTCTTGCATCTGAT
1 AACCAAGCACATCTGTATCACATCCAGAATTGGAAGACATTCTGATTGATATTCTTGCATATGAT
* * * *
9654086 GAAACCGTTCAACTTCTCTCATACACCTAGACACAAAGATGAACTTTATTCAATCTTTTAATTGA
66 GAAACTGTTCAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
* * * *
9654151 AAACATGCATTAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGATGATTGAA-CATGTT
131 AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGGTGAATGAATTA-GTT
** * * *
9654215 TAATTAATGAGCTAACTTTATTAAATGAACTAGATGTGTAAATAAAGCAGCTTACTAAATAATCT
195 TAATTAATGAGCTAACTTTATTAAATGAACTAGATGCATAAATAAAGTAACTTACTAAAAAATCT
* * * *
9654280 AAATGCATAAATGGACTACTTCCCTAAATGAACCATAAGATTTAAATGCAATGCATGCTTAAATG
260 AAATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATG
*
9654345 AACAACACACTTATTAAATGCAATTAATGTTATGAAAACAACAAATTCTCATGCAAATTCTTGCA
325 AACAACACACTTATTAAATGCAATTAATGTTATGAAAACATCAAATTCTCATGCAAATTCTTGCA
* * * * *
9654410 TAAGCAACGTAAAGTGTTCCTCCCTTATTATTCCTCATTCTTCACATCCCAAGCTTAAAGTAAAG
390 TAAGCAACGTAAAGAGTTCCTCCCTTATTATTCCTCATTCCTCACATCCCAAACTTAATGTAAAC
* * *
9654475 ATACTTTCCATGGTTGCTTGGAACTCCTTATAACAAAGGAACTCTTAAAGAAGTAAAAACAAGAT
455 ATACTTTCCATGGATGCTTGGAACTCCTTATAACAAAGGAACTCATAAAAAAGTAAAAACAAGAT
* * *
9654540 GAAGTAAGGTATAACTCCCTAAGAGTTAGCCTTAATGATCTTTCATGGTGTGATCAAACAATGGA
520 GAAGTAAGGTAGAACTCCCTTAGAGTTAGCCTTAATGATCTTCCATGGTGTGATCAAACAATGGA
* *
9654605 GAAAATGGAT-TCTGATC-AGGATCACATCATCCCCTCCCTCTTTCAAGTGATTTGTCCCCAAAT
585 GAAAATGGATGT-TGATCAAGGATCATATCATCCCCTCCCTCTTTAAAGTGATTTGTCCCCAAAT
* * * *
9654668 CGATACTTGCAACGAACGAGAACAATTTTGATTTGCTTTGGGCGGGGAACTGCTTCACTTTTGAT
649 CAACACTTGCAACAAACGAGAACAATTTTGATTTCCTTT-GGC-GGGAACTGCTTCACTTTTGAT
*
9654733 ATACACAAAACCCATTCG
712 ATACACAAAACCCATTCA
* * * *
9654751 AACCAAACACATCTGTATCACATCCAGAATTGGAAGACGTTTTGATTGATATTCTCGCATATGAT
1 AACCAAGCACATCTGTATCACATCCAGAATTGGAAGACATTCTGATTGATATTCTTGCATATGAT
*
9654816 GAAACTGTTTAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
66 GAAACTGTTCAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
* * *
9654881 AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGATCTAGTTTGGGGAATGAACTAGTTT
131 AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGGTGAATGAATTAGTTT
* * * * *
9654946 AATTAATGAACAAACTTTATTAAATGAACTAGATACATAAATAAATTAACTTACTAAATAATCTA
196 AATTAATGAGCTAACTTTATTAAATGAACTAGATGCATAAATAAAGTAACTTACTAAAAAATCTA
* * *
9655011 AATGCATAAATGAACTACTTCCCTAAATGAGCTAGATGATTTAAATGCAATTCATGATTAAATGA
261 AATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATGA
* * * * *
9655076 ACAACACACTTATTAAATGCAATAAATGTTAT-AAAATCTTAAAATTCACATGCAAATTATTGCA
326 ACAACACACTTATTAAATGCAATTAATGTTATGAAAA-CATCAAATTCTCATGCAAATTCTTGCA
* * * * * * * *
9655140 TAAGAAATGTATAGAGTTCCTCCCTTATTATTTCTTATTCCTAACATCCAAAACTTAATATAAAC
390 TAAGCAACGTAAAGAGTTCCTCCCTTATTATTCCTCATTCCTCACATCCCAAACTTAATGTAAAC
9655205 ATAC-TTCCATGG
455 ATACTTTCCATGG
9655217 CCTGATCAAA
Statistics
Matches: 1675, Mismatches: 216, Indels: 48
0.86 0.11 0.02
Matches are distributed among these distances:
713 135 0.08
714 2 0.00
717 3 0.00
718 2 0.00
726 6 0.00
727 230 0.14
728 413 0.25
729 414 0.25
730 469 0.28
731 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (729 bp):
AACCAAGCACATCTGTATCACATCCAGAATTGGAAGACATTCTGATTGATATTCTTGCATATGAT
GAAACTGTTCAACTTCCCTCATGCACCTAGACACAAAGGTGAACTTTATTCAATCTTTTAATTGA
AAACATGCATGAGACAATTAAGAGTTAGTTTAATAAATGAACTAGTTTGGTGAATGAATTAGTTT
AATTAATGAGCTAACTTTATTAAATGAACTAGATGCATAAATAAAGTAACTTACTAAAAAATCTA
AATGCATAAATGAACTACTTCCCTAAATGAACTAGATGATTTAAATGCAATGCATGCTTAAATGA
ACAACACACTTATTAAATGCAATTAATGTTATGAAAACATCAAATTCTCATGCAAATTCTTGCAT
AAGCAACGTAAAGAGTTCCTCCCTTATTATTCCTCATTCCTCACATCCCAAACTTAATGTAAACA
TACTTTCCATGGATGCTTGGAACTCCTTATAACAAAGGAACTCATAAAAAAGTAAAAACAAGATG
AAGTAAGGTAGAACTCCCTTAGAGTTAGCCTTAATGATCTTCCATGGTGTGATCAAACAATGGAG
AAAATGGATGTTGATCAAGGATCATATCATCCCCTCCCTCTTTAAAGTGATTTGTCCCCAAATCA
ACACTTGCAACAAACGAGAACAATTTTGATTTCCTTTGGCGGGAACTGCTTCACTTTTGATATAC
ACAAAACCCATTCA
Found at i:9654198 original size:17 final size:17
Alignment explanation
Indices: 9654176--9654247 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 17
9654166 AATTAAGAGT
9654176 TAGTTTAATAAATGAAC
1 TAGTTTAATAAATGAAC
* * *
9654193 TAGTTTGATGATTGAAC
1 TAGTTTAATAAATGAAC
* *
9654210 -ATGTTTAATTAATGAGC
1 TA-GTTTAATAAATGAAC
* *
9654227 TAACTTTATTAAATGAAC
1 T-AGTTTAATAAATGAAC
9654245 TAG
1 TAG
9654248 ATGTGTAAAT
Statistics
Matches: 40, Mismatches: 12, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
16 1 0.03
17 26 0.65
18 12 0.30
19 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (17 bp):
TAGTTTAATAAATGAAC
Done.