Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009639.1 Hibiscus syriacus cultivar Beakdansim tig00117048_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15077257
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 62 of 62
Found at i:14901844 original size:25 final size:25
Alignment explanation
Indices: 14901781--14901855 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
14901771 TATTACTAAA
* *
14901781 TATATATG-ATGTGTGTGAATATATG
1 TATAT-TGTATGTATGTAAATATATG
**
14901806 TATATTGTGCGTATGTAAATATATG
1 TATATTGTATGTATGTAAATATATG
*
14901831 TATATTGTATGTATGTGATATATAT
1 TATATTGTATGTATGT-AAATATAT
14901856 TAACATATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
24 2 0.05
25 32 0.78
26 7 0.17
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (25 bp):
TATATTGTATGTATGTAAATATATG
Found at i:14905204 original size:20 final size:20
Alignment explanation
Indices: 14905181--14905230 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
14905171 TTTGAGTTAA
14905181 TTAAAATATGTTTAAAG-TGT
1 TTAAAATATGTTTAAAGCT-T
*
14905201 TTAAAATGTGTTTAAAGCTT
1 TTAAAATATGTTTAAAGCTT
*
14905221 TTTAAATATG
1 TTAAAATATG
14905231 AAAAACAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (20 bp):
TTAAAATATGTTTAAAGCTT
Found at i:14907281 original size:20 final size:19
Alignment explanation
Indices: 14907240--14907281 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
14907230 TAATTATATT
*
14907240 TATATTTGTTTTCAAACCA
1 TATATTTGTTTTCAAACAA
14907259 TATATTATGTTTTCTAAA-AA
1 TATATT-TGTTTTC-AAACAA
14907279 TAT
1 TAT
14907282 TATATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 11 0.55
21 3 0.15
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.50
Consensus pattern (19 bp):
TATATTTGTTTTCAAACAA
Found at i:14907371 original size:15 final size:16
Alignment explanation
Indices: 14907343--14907376 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
14907333 ATATATAACC
14907343 AAAATAAAACAAAACA
1 AAAATAAAACAAAACA
*
14907359 AAAAT-AAATAAAACA
1 AAAATAAAACAAAACA
14907374 AAA
1 AAA
14907377 GGAAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (16 bp):
AAAATAAAACAAAACA
Found at i:14907955 original size:88 final size:87
Alignment explanation
Indices: 14907837--14908133 Score: 418
Period size: 88 Copynumber: 3.4 Consensus size: 87
14907827 CAAATCGGAG
* *
14907837 AGAAT-TTGCTCCGCTACTCTTTAAGGGAGATTAGATTCGAGATTGATTTGCTTCGCTGCTCTTC
1 AGAATATT-CTCCGCTACTCTTT-AGGGAGATCAGACTCGAGATTGATTTGCTTCGCTGCTCTTC
*
14907901 AGGAAGACCAAATATGAAATAAGA
64 AGGAAGACCAAATCTGAAATAAGA
* * * * *
14907925 AGAATATTCTCCACTACTCTTTTGGAGAGATCAGACTCGAAATTAATTTGCTTCCCTGCTCTTCA
1 AGAATATTCTCCGCTACTCTTTAGG-GAGATCAGACTCGAGATTGATTTGCTTCGCTGCTCTTCA
14907990 GGAAGACCAAATCTGAAATAAGA
65 GGAAGACCAAATCTGAAATAAGA
* *
14908013 AGAATATGCTCCGCTACTCTTTAGGGGATATCAGACTCGAGATTGATTTGCTTCGCTGCTCTTCA
1 AGAATATTCTCCGCTACTCTTTA-GGGAGATCAGACTCGAGATTGATTTGCTTCGCTGCTCTTCA
14908078 GGAAGACCAAATCTGAAATAAGA
65 GGAAGACCAAATCTGAAATAAGA
* * *
14908101 AGAATCTACT-CGCTAGTCTTTAGGGGAGATCAG
1 AGAATATTCTCCGCTACTCTTTA-GGGAGATCAG
14908134 TCTCAAGAAA
Statistics
Matches: 187, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
87 23 0.12
88 160 0.86
89 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (87 bp):
AGAATATTCTCCGCTACTCTTTAGGGAGATCAGACTCGAGATTGATTTGCTTCGCTGCTCTTCAG
GAAGACCAAATCTGAAATAAGA
Found at i:14915658 original size:22 final size:22
Alignment explanation
Indices: 14915627--14915671 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14915617 AGTCGAGGGT
* *
14915627 TCTATGTGGTCCTTCGGGACAA
1 TCTATATGGTCATTCGGGACAA
14915649 TCTATATGGTCATTCGGGACAA
1 TCTATATGGTCATTCGGGACAA
14915671 T
1 T
14915672 TATGTGGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (22 bp):
TCTATATGGTCATTCGGGACAA
Found at i:14915706 original size:23 final size:23
Alignment explanation
Indices: 14915672--14915770 Score: 128
Period size: 23 Copynumber: 4.3 Consensus size: 23
14915662 TCGGGACAAT
*
14915672 TATGTGGAACTTCGATGCAAACC
1 TATGTGGCACTTCGATGCAAACC
*
14915695 TATATGGCACTTC-AGTGCAAACC
1 TATGTGGCACTTCGA-TGCAAACC
*
14915718 TATGTGGCACTTCGGTGCAAACC
1 TATGTGGCACTTCGATGCAAACC
* * *
14915741 TATGTGGCACTTCGGTACAAAAC
1 TATGTGGCACTTCGATGCAAACC
14915764 TATGTGG
1 TATGTGG
14915771 TCCTTCGGGA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
22 1 0.01
23 67 0.99
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (23 bp):
TATGTGGCACTTCGATGCAAACC
Found at i:14915777 original size:46 final size:45
Alignment explanation
Indices: 14915672--14915805 Score: 148
Period size: 46 Copynumber: 3.0 Consensus size: 45
14915662 TCGGGACAAT
* * * * *
14915672 TATGTGGAACTTCGATGCAAACCTATATGGCACTTCAGTGCAAACC
1 TATGTGG-CCTTCGGTGCAAACCTATGTGGCACTTCGGTGCAAAAC
*
14915718 TATGTGGCACTTCGGTGCAAACCTATGTGGCACTTCGGTACAAAAC
1 TATGTGGC-CTTCGGTGCAAACCTATGTGGCACTTCGGTGCAAAAC
*
14915764 TATGTGGTCCTTCGG-G-ATAA-TTATGTGGCACTTCGGTGCAAA
1 TATGTGG-CCTTCGGTGCA-AACCTATGTGGCACTTCGGTGCAAA
14915806 TTACTAGCTG
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
44 21 0.27
45 3 0.04
46 52 0.68
47 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (45 bp):
TATGTGGCCTTCGGTGCAAACCTATGTGGCACTTCGGTGCAAAAC
Found at i:14929554 original size:25 final size:24
Alignment explanation
Indices: 14929526--14929572 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14929516 TGGAGGAGGT
*
14929526 ATTGTAACATACTTTGTTAAAAACA
1 ATTG-AACATACTTGGTTAAAAACA
**
14929551 ATTGATTATACTTGGTTAAAAA
1 ATTGAACATACTTGGTTAAAAA
14929573 TTTTGGTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (24 bp):
ATTGAACATACTTGGTTAAAAACA
Found at i:14929733 original size:25 final size:24
Alignment explanation
Indices: 14929705--14929751 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
14929695 TGGAGGAGGT
*
14929705 ATTGTAACATACTTTGTTAAAAACA
1 ATTG-AACATACTTGGTTAAAAACA
**
14929730 ATTGATTATACTTGGTTAAAAA
1 ATTGAACATACTTGGTTAAAAA
14929752 TTTTGGTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (24 bp):
ATTGAACATACTTGGTTAAAAACA
Found at i:14929780 original size:179 final size:183
Alignment explanation
Indices: 14929459--14929801 Score: 658
Period size: 179 Copynumber: 1.9 Consensus size: 183
14929449 TCAGCATTTT
14929459 CATATAGATGCATGTAGTTTATTTTTTATGCATTGAGGACAATGTATCCCTCAAGTTTGGAGGAG
1 CATATAGATGCATGTAGTTTATTTTTTATGCATTGAGGACAATGTATCCCTCAAGTTTGGAGGAG
14929524 GTATTGTAACATACTTTGTTAAAAACAATTGATTATACTTGGTTAAAAATTTTGGTTGTCATAAT
66 GTATTGTAACATACTTTGTTAAAAACAATTGATTATACTTGGTTAAAAATTTTGGTTGTCATAAT
14929589 ATAAGCATGTTAAGTTTATTG-TTTGAATGGATTGCAGGATGTGTCCTTCAGA
131 ATAAGCATGTTAAGTTTATTGTTTTGAATGGATTGCAGGATGTGTCCTTCAGA
14929641 CATATAGATGCA-GT-GTTT-TTTTTTATGCATTGAGGACAATGTATCCCTCAAGTTTGGAGGAG
1 CATATAGATGCATGTAGTTTATTTTTTATGCATTGAGGACAATGTATCCCTCAAGTTTGGAGGAG
14929703 GTATTGTAACATACTTTGTTAAAAACAATTGATTATACTTGGTTAAAAATTTTGGTTGTCATAAT
66 GTATTGTAACATACTTTGTTAAAAACAATTGATTATACTTGGTTAAAAATTTTGGTTGTCATAAT
14929768 ATAAGCATGTTAAGTTTATTGTTTTGAATGGATT
131 ATAAGCATGTTAAGTTTATTGTTTTGAATGGATT
14929802 AGAGATGCCC
Statistics
Matches: 160, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
179 130 0.81
180 16 0.10
181 2 0.01
182 12 0.08
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (183 bp):
CATATAGATGCATGTAGTTTATTTTTTATGCATTGAGGACAATGTATCCCTCAAGTTTGGAGGAG
GTATTGTAACATACTTTGTTAAAAACAATTGATTATACTTGGTTAAAAATTTTGGTTGTCATAAT
ATAAGCATGTTAAGTTTATTGTTTTGAATGGATTGCAGGATGTGTCCTTCAGA
Found at i:14936297 original size:2 final size:2
Alignment explanation
Indices: 14936290--14936318 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14936280 TTTAAAAACG
14936290 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14936319 TTCATAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14941465 original size:18 final size:18
Alignment explanation
Indices: 14941442--14941482 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14941432 TGTTTGATTA
*
14941442 AAAGTAGAGAACTTTATT
1 AAAGTAAAGAACTTTATT
* *
14941460 AAAGTAAAGTATTTTATT
1 AAAGTAAAGAACTTTATT
14941478 AAAGT
1 AAAGT
14941483 CAATTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.02, G:0.15, T:0.37
Consensus pattern (18 bp):
AAAGTAAAGAACTTTATT
Found at i:14941492 original size:18 final size:18
Alignment explanation
Indices: 14941454--14941501 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
14941444 AGTAGAGAAC
14941454 TTTATTAAAGTAAAGTAT
1 TTTATTAAAGTAAAGTAT
* * *
14941472 TTTATTAAAGTCAATTTT
1 TTTATTAAAGTAAAGTAT
14941490 TTTA-TAAAGTAA
1 TTTATTAAAGTAA
14941502 CTTTTACTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (18 bp):
TTTATTAAAGTAAAGTAT
Found at i:14944237 original size:19 final size:19
Alignment explanation
Indices: 14944197--14944233 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
14944187 TTTATGAATT
14944197 TAAATTTAATAAAAATACA
1 TAAATTTAATAAAAATACA
14944216 TAAA-TTAA-AAATAATACA
1 TAAATTTAATAAA-AATACA
14944234 ATAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 10 0.59
19 4 0.24
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAATTTAATAAAAATACA
Found at i:14945041 original size:18 final size:18
Alignment explanation
Indices: 14945018--14945058 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
14945008 GGAATGTAAA
*
14945018 ATTACCGGCGGGAATAGG
1 ATTACCGGCGGGAATAAG
*
14945036 ATTACCGGTGGGAATAAG
1 ATTACCGGCGGGAATAAG
14945054 ATTAC
1 ATTAC
14945059 TGAGAATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.22
Consensus pattern (18 bp):
ATTACCGGCGGGAATAAG
Found at i:14948433 original size:21 final size:20
Alignment explanation
Indices: 14948399--14948437 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14948389 TACAACTTAC
*
14948399 ATTTTAAAAATTTCATATTA
1 ATTTAAAAAATTTCATATTA
14948419 ATTTAAAATAATTTCATAT
1 ATTTAAAA-AATTTCATAT
14948438 ATTTATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTTAAAAAATTTCATATTA
Found at i:14950131 original size:33 final size:33
Alignment explanation
Indices: 14950094--14950219 Score: 92
Period size: 33 Copynumber: 3.5 Consensus size: 33
14950084 AAAATATAAT
14950094 TAACTCAAAAATTGAGGGGAAACTTAATTTAAC
1 TAACTCAAAAATTGAGGGGAAACTTAATTTAAC
* * * * * *
14950127 TAACTTAAAAAATGAGGGCTTAATGGGGATCTAAAATATAAT
1 TAACTCAAAAATTGAGGG--GAA-----A-CT-TAATTTAAC
14950169 TAACTCAAAAATTGAGGGGAAACTTAATTTAAC
1 TAACTCAAAAATTGAGGGGAAACTTAATTTAAC
*
14950202 TAACTTAGAAAA-TGAGGG
1 TAACTCA-AAAATTGAGGG
14950220 CTTAAAATTA
Statistics
Matches: 70, Mismatches: 13, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
33 34 0.49
34 6 0.09
35 3 0.04
40 3 0.04
41 2 0.03
42 22 0.31
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (33 bp):
TAACTCAAAAATTGAGGGGAAACTTAATTTAAC
Found at i:14950158 original size:75 final size:75
Alignment explanation
Indices: 14950069--14950224 Score: 303
Period size: 75 Copynumber: 2.1 Consensus size: 75
14950059 GGGAGGCAAT
14950069 GCTTAATGGGGATCTAAAATATAATTAACTCAAAAATTGAGGGGAAACTTAATTTAACTAACTTA
1 GCTTAATGGGGATCTAAAATATAATTAACTCAAAAATTGAGGGGAAACTTAATTTAACTAACTTA
14950134 AAAAATGAGG
66 AAAAATGAGG
14950144 GCTTAATGGGGATCTAAAATATAATTAACTCAAAAATTGAGGGGAAACTTAATTTAACTAACTTA
1 GCTTAATGGGGATCTAAAATATAATTAACTCAAAAATTGAGGGGAAACTTAATTTAACTAACTTA
*
14950209 GAAAATGAGG
66 AAAAATGAGG
14950219 GCTTAA
1 GCTTAA
14950225 AATTAAATTA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 80 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (75 bp):
GCTTAATGGGGATCTAAAATATAATTAACTCAAAAATTGAGGGGAAACTTAATTTAACTAACTTA
AAAAATGAGG
Found at i:14952850 original size:40 final size:40
Alignment explanation
Indices: 14952795--14952875 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
14952785 TGATACTTCA
*
14952795 AAGAAACTTTCATCCCGCAAGCAGATCAAACCCCCTGCAG
1 AAGAAACTTTCATCCCACAAGCAGATCAAACCCCCTGCAG
*
14952835 AAGAAACTTTCATCCCACAATCAGATCAAACCCCCTGCAG
1 AAGAAACTTTCATCCCACAAGCAGATCAAACCCCCTGCAG
14952875 A
1 A
14952876 CTAGCTGGCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.37, C:0.35, G:0.12, T:0.16
Consensus pattern (40 bp):
AAGAAACTTTCATCCCACAAGCAGATCAAACCCCCTGCAG
Found at i:14953719 original size:18 final size:18
Alignment explanation
Indices: 14953696--14953738 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
14953686 TGTTCAGCAG
14953696 AGAAAATCGAT-CAAAACT
1 AGAAAAT-GATGCAAAACT
*
14953714 AGAAAATGATGCAACACT
1 AGAAAATGATGCAAAACT
14953732 AGGAAAA
1 A-GAAAA
14953739 CAAAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 3 0.14
18 14 0.64
19 5 0.23
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.14
Consensus pattern (18 bp):
AGAAAATGATGCAAAACT
Found at i:14955074 original size:29 final size:29
Alignment explanation
Indices: 14955032--14955096 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
14955022 TTGAGTGTTT
14955032 GGGATTTTAGGATTAGAAACTTAAATTTA
1 GGGATTTTAGGATTAGAAACTTAAATTTA
14955061 GGGATTTTAGGATTAGAAACTTAAATTTA
1 GGGATTTTAGGATTAGAAACTTAAATTTA
*
14955090 AGGATTT
1 GGGATTT
14955097 GAGAATTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.22, T:0.38
Consensus pattern (29 bp):
GGGATTTTAGGATTAGAAACTTAAATTTA
Found at i:14956543 original size:17 final size:17
Alignment explanation
Indices: 14956523--14956582 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
14956513 AATAAGTTAG
14956523 TTCATTAATTAAACTAA
1 TTCATTAATTAAACTAA
* *
14956540 TTCATTCATCAAAC-AA
1 TTCATTAATTAAACTAA
*
14956556 GTTCATTTATTAAACTAA
1 -TTCATTAATTAAACTAA
*
14956574 CTC-TTAATT
1 TTCATTAATT
14956583 GTTTCATGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 7 0.20
17 26 0.74
18 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.42
Consensus pattern (17 bp):
TTCATTAATTAAACTAA
Found at i:14959689 original size:75 final size:75
Alignment explanation
Indices: 14959602--14959935 Score: 443
Period size: 75 Copynumber: 4.4 Consensus size: 75
14959592 CTTAACTGGT
* * *
14959602 TAAAATAAAATAGGCGCTACTTATTATGTTAAACTACCTACCAGTTTGTTTGAAGGTTACTAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTTACTAATA
* *
14959667 GTGTAAACGG
66 ATGTAAACAG
* * * * *
14959677 TAAAATAAAATAGGCGTTATCTATTACGTTAAAATGCCTACCGGTTTGTTTAAAGGTTACTAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTTACTAATA
**
14959742 ATGTAAATGG
66 ATGTAAACAG
* * *
14959752 TAAAATAAAATAGGCACTACCTATTACGTTAAACTACCTACCAGTTTGTTTTGAAGGTTACTAAC
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACCAGTTTG-TTTAAAGGTTACTAAT
14959817 AATGTAAACAG
65 AATGTAAACAG
* * ** *
14959828 TAAAATAAAATAGGCGCTACCTATCACGTTAAACTAGCTACTGGTTTGTTTAAAGGTTAATAATA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTTACTAATA
14959893 ATGTAAACAG
66 ATGTAAACAG
* * * *
14959903 TAAACTAAAATAGACGTTACCTATTATGTTAAA
1 TAAAATAAAATAGGCGCTACCTATTACGTTAAA
14959936 TAGGCGCTAC
Statistics
Matches: 225, Mismatches: 33, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
75 159 0.71
76 66 0.29
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (75 bp):
TAAAATAAAATAGGCGCTACCTATTACGTTAAACTACCTACCAGTTTGTTTAAAGGTTACTAATA
ATGTAAACAG
Found at i:14959875 original size:151 final size:150
Alignment explanation
Indices: 14959602--14959935 Score: 490
Period size: 151 Copynumber: 2.2 Consensus size: 150
14959592 CTTAACTGGT
* *
14959602 TAAAATAAAATAGGCGCTACTTATTATGTTAAACTACCTACCAGTTTGTTTGAAGGTTACTAATA
1 TAAAATAAAATAGGCGCTACCTATTATGTTAAACTACCTACCAGTTTGTTTGAAGGTTACTAACA
* * * * *
14959667 GTGTAAACGGTAAAATAAAATAGGCGTTATCTATTACGTTAAAATGCCTACCGGTTTGTTTAAAG
66 ATGTAAACAGTAAAATAAAATAGGCGCTACCTATCACGTTAAAATGCCTACCGGTTTGTTTAAAG
* **
14959732 GTTACTAATAATGTAAATGG
131 GTTAATAATAATGTAAACAG
* *
14959752 TAAAATAAAATAGGCACTACCTATTACGTTAAACTACCTACCAGTTTGTTTTGAAGGTTACTAAC
1 TAAAATAAAATAGGCGCTACCTATTATGTTAAACTACCTACCAGTTTG-TTTGAAGGTTACTAAC
* *
14959817 AATGTAAACAGTAAAATAAAATAGGCGCTACCTATCACGTTAAACTAG-CTACTGGTTTGTTTAA
65 AATGTAAACAGTAAAATAAAATAGGCGCTACCTATCACGTTAAAAT-GCCTACCGGTTTGTTTAA
14959881 AGGTTAATAATAATGTAAACAG
129 AGGTTAATAATAATGTAAACAG
* * *
14959903 TAAACTAAAATAGACGTTACCTATTATGTTAAA
1 TAAAATAAAATAGGCGCTACCTATTATGTTAAA
14959936 TAGGCGCTAC
Statistics
Matches: 163, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
150 45 0.28
151 117 0.72
152 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (150 bp):
TAAAATAAAATAGGCGCTACCTATTATGTTAAACTACCTACCAGTTTGTTTGAAGGTTACTAACA
ATGTAAACAGTAAAATAAAATAGGCGCTACCTATCACGTTAAAATGCCTACCGGTTTGTTTAAAG
GTTAATAATAATGTAAACAG
Found at i:14959936 original size:23 final size:23
Alignment explanation
Indices: 14959910--14959981 Score: 85
Period size: 23 Copynumber: 3.1 Consensus size: 23
14959900 CAGTAAACTA
* *
14959910 AAATAGACGTTACCTATTATGTT
1 AAATAGACGCTACCTATTACGTT
*
14959933 AAATAGGCGCTACCTATTACGTT
1 AAATAGACGCTACCTATTACGTT
14959956 AAATA-AGCGCTA-CTCATTACGTT
1 AAATAGA-CGCTACCT-ATTACGTT
14959979 AAA
1 AAA
14959982 CTAGCTACTG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.05
23 41 0.95
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (23 bp):
AAATAGACGCTACCTATTACGTT
Found at i:14960117 original size:120 final size:120
Alignment explanation
Indices: 14959835--14960199 Score: 418
Period size: 121 Copynumber: 3.0 Consensus size: 120
14959825 CAGTAAAATA
* *
14959835 AAATAGGCGCTACCTATCACGTTAAACTAGCTACTGGTTTGTTTAAAGGTTAATAATAATGTAAA
1 AAATAAGCGCTACCTATTACGTTAAACTAGCTACTGGTTTGTTTAAAGGTTAATAATAATGTAAA
** * * * * *
14959900 CAGTAAACTAAAATAGACGTTACCTATTATGTTAAATAGGCGCTACCTATTACGTT
66 CACAAAAATAAAATAGACGCTACCTATTATGTT-AATAGACACTACATATTACGTT
*
14959956 AAATAAGCGCTA-CTCATTACGTTAAACTAGCTACTGATTTGTTTGAAA-GTTAATAATAATGTA
1 AAATAAGCGCTACCT-ATTACGTTAAACTAGCTACTGGTTTGTTT-AAAGGTTAATAATAATGTA
* ** *
14960019 AATGACAAAATATAAAATAGGTGCTACTTATTATG-T-ATAGACACTACATATTACGTT
64 AA-CACAAAA-ATAAAATAGACGCTACCTATTATGTTAATAGACACTACATATTACGTT
* * *
14960076 AAATAAGTGCTACCTATTACATTAAACTAACTACTGGTTTGTTTAAAGGTTAATAATAATGTAAA
1 AAATAAGCGCTACCTATTACGTTAAACTAGCTACTGGTTTGTTTAAAGGTTAATAATAATGTAAA
*** * *
14960141 CGTTAAAACAAAATA-AGCGCTACCTATTATGTTAAATA-AGCGCTACATATTACGTT
66 CACAAAAATAAAATAGA-CGCTACCTATTATGTT-AATAGA-CACTACATATTACGTT
14960197 AAA
1 AAA
14960200 CTAGCTATCA
Statistics
Matches: 206, Mismatches: 27, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
118 19 0.09
119 7 0.03
120 75 0.36
121 78 0.38
122 8 0.04
123 19 0.09
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (120 bp):
AAATAAGCGCTACCTATTACGTTAAACTAGCTACTGGTTTGTTTAAAGGTTAATAATAATGTAAA
CACAAAAATAAAATAGACGCTACCTATTATGTTAATAGACACTACATATTACGTT
Found at i:14960178 original size:23 final size:23
Alignment explanation
Indices: 14960151--14960199 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
14960141 CGTTAAAACA
* *
14960151 AAATAAGCGCTACCTATTATGTT
1 AAATAAGCGCTACATATTACGTT
14960174 AAATAAGCGCTACATATTACGTT
1 AAATAAGCGCTACATATTACGTT
14960197 AAA
1 AAA
14960200 CTAGCTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (23 bp):
AAATAAGCGCTACATATTACGTT
Found at i:14960236 original size:98 final size:98
Alignment explanation
Indices: 14960062--14960238 Score: 275
Period size: 98 Copynumber: 1.8 Consensus size: 98
14960052 TGTATAGACA
* * *
14960062 CTACATATTACGTTAAATAAGTGCTACCTATTACATTAAACTAACTACTGGTTTGTTTAAAGGTT
1 CTACATATTACGTTAAATAAGCGCTACATATTACATTAAACTAACTACTAGTTTGTTTAAAGGTT
14960127 AATAATAATGTAAACGTTAAAACAAAATAAGCG
66 AATAATAATGTAAACGTTAAAACAAAATAAGCG
* * * *
14960160 CTACCTATTATGTTAAATAAGCGCTACATATTACGTTAAACTAGCTA-TCAGTTTGTTTAAAGGT
1 CTACATATTACGTTAAATAAGCGCTACATATTACATTAAACTAACTACT-AGTTTGTTTAAAGGT
14960224 TAATAATAATGTAAA
65 TAATAATAATGTAAA
14960239 TGGTAAAATA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
97 1 0.01
98 70 0.99
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (98 bp):
CTACATATTACGTTAAATAAGCGCTACATATTACATTAAACTAACTACTAGTTTGTTTAAAGGTT
AATAATAATGTAAACGTTAAAACAAAATAAGCG
Found at i:14967116 original size:21 final size:21
Alignment explanation
Indices: 14967091--14967130 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14967081 AAGACTCTAT
14967091 TTTCAAAATACAAAAATGATA
1 TTTCAAAATACAAAAATGATA
**
14967112 TTTCAAAATTGAAAAATGA
1 TTTCAAAATACAAAAATGA
14967131 AAATACTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (21 bp):
TTTCAAAATACAAAAATGATA
Found at i:14970863 original size:22 final size:23
Alignment explanation
Indices: 14970833--14970877 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
14970823 GAATTATAGG
*
14970833 GCAGAGGGAATCGATACCCTCTT
1 GCAGAGGGAACCGATACCCTCTT
*
14970856 GCAG-GGGAACCGATTCCCTCTT
1 GCAGAGGGAACCGATACCCTCTT
14970878 TGAAGGAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (23 bp):
GCAGAGGGAACCGATACCCTCTT
Found at i:14973530 original size:143 final size:142
Alignment explanation
Indices: 14973253--14973537 Score: 387
Period size: 143 Copynumber: 2.0 Consensus size: 142
14973243 AGGGGGAGAT
* * *
14973253 TGTTGAAAATATTTTGATGTTTCGATATAACAAATTAAATTAAAAGAATTTTAATTTTGAAAATA
1 TGTTGAAAACATTTTGATATTTCGATATAACAAATTAAATTAAAAGAATTTTAATTTTCAAAATA
* * *
14973318 ATTTTTCTAAGCATATTCGATATATTAAATCGAATATCAAAATATTACTCAAAGTATTTCAAAGT
66 ATTTTTCTAAGCATATTCGATAAATTAAATCGAATATCAAAACATTACTCAAAGTATTTCAAAGA
14973383 TCATTTTAAATC
131 TCATTTTAAATC
* * *
14973395 TGTTGAAAACATTTTGATATTTCGATATAACAAATTAAGTTAAATGAATTTTAAGATTTTCCAAA
1 TGTTGAAAACATTTTGATATTTCGATATAACAAATTAAATTAAAAGAATTTT-A-ATTTTCAAAA
* * * *
14973460 TGA-TTTTCTAAGTATATTCGATAGAATT-ATTCGAATATCAAAACATTACTCCAAA-TCTTTCA
64 TAATTTTTCTAAGCATATTCGATA-AATTAAATCGAATATCAAAACATTACT-CAAAGTATTTCA
*
14973522 AAGATCATTTTTAATC
127 AAGATCATTTTAAATC
14973538 CTTACTCAAA
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
142 48 0.38
143 60 0.48
144 17 0.14
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (142 bp):
TGTTGAAAACATTTTGATATTTCGATATAACAAATTAAATTAAAAGAATTTTAATTTTCAAAATA
ATTTTTCTAAGCATATTCGATAAATTAAATCGAATATCAAAACATTACTCAAAGTATTTCAAAGA
TCATTTTAAATC
Found at i:14988430 original size:2 final size:2
Alignment explanation
Indices: 14988419--14988452 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
14988409 AAATATTAAC
14988419 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14988453 ACAAAATAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14988660 original size:105 final size:106
Alignment explanation
Indices: 14988450--14988708 Score: 378
Period size: 105 Copynumber: 2.4 Consensus size: 106
14988440 ATATATATAT
* * * ** *
14988450 ATAACAAAATAAGAAATTAATCTATTTTGTTGTCGTGGGATTTCGAAGGCCACACCAGCTTAAAC
1 ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAGGCCACA-CAGCTTAAAC
*
14988515 TTGGTAACATTTTAGGCGCTACCTAATATGGTGATAATATTA
65 TTGGTAACATTTTAGGCGATACCTAATATGGTGATAATATTA
*
14988557 ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAGGCCATCA-A-CTTAAAT
1 ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAGGCCA-CACAGCTTAAAC
* * * *
14988620 TTGGTAATATTTTAGGCGATGCCTAATATGTTGATAATATTG
65 TTGGTAACATTTTAGGCGATACCTAATATGGTGATAATATTA
14988662 ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAA
1 ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAA
14988709 AGCCCCATTA
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
105 90 0.65
106 1 0.01
107 46 0.33
108 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (106 bp):
ATAACAAAATAAGTAATTAACCTATTTTGTTATCGTCAGATTTCTAAGGCCACACAGCTTAAACT
TGGTAACATTTTAGGCGATACCTAATATGGTGATAATATTA
Found at i:14991211 original size:2 final size:2
Alignment explanation
Indices: 14991206--14991255 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
14991196 ATTTTTTGTC
14991206 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14991248 AT AT AT AT
1 AT AT AT AT
14991256 GTGTGTGTGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14994311 original size:35 final size:35
Alignment explanation
Indices: 14994265--14994331 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
14994255 CCTTAGGTCC
* *
14994265 ATAAGGAATTACCAGCTTGATCGGTGCTGAACTGT
1 ATAAGGAATTACCAGATTGATCGGAGCTGAACTGT
*
14994300 ATAAGGAATTACCATATTGATCGGAGCTGAAC
1 ATAAGGAATTACCAGATTGATCGGAGCTGAAC
14994332 CTACAGAGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (35 bp):
ATAAGGAATTACCAGATTGATCGGAGCTGAACTGT
Found at i:14995115 original size:181 final size:181
Alignment explanation
Indices: 14994810--14995176 Score: 661
Period size: 181 Copynumber: 2.0 Consensus size: 181
14994800 ATCATTTTTG
14994810 TATTCTGTTATCAATGGTATCGATACTTCCTCACAATATCGATACCCCTTTTCGGTATCGATACT
1 TATTCTGTTATCAATGGTATCGATACTTCCTCACAATATCGA-ACCCCTTTTCGGTATCGATACT
14994875 TCTTGCATCATTATCGATACTGTTCTATCAGTACCGATACCCGTGCCCGAAATTTCCAGTTTTTA
65 TCTTGCATCATTATCGATACTGTTCTATCAGTACCGATACCCGTGCCCGAAATTTCCAGTTTTTA
14994940 ACCCGA-TATTACCC-AATGGGGTCAAATTTCGTTATG-TTACACCCTACAATAC
130 ACCCGATTATTACCCAAATGGGGTCAAATTTCGTT-TGTTTACA--CTACAATAC
14994992 TATTCTGTTATCAATGGTATCGATACATTCCTCACAATATCG-ACCCCTTTTCGGTATCGATACT
1 TATTCTGTTATCAATGGTATCGATAC-TTCCTCACAATATCGAACCCCTTTTCGGTATCGATACT
14995056 TCTTGCATCATTATCGATACTGTTCTATCAGTACCGATACCCGTGCCCGAAATTTCCAGTTTTTA
65 TCTTGCATCATTATCGATACTGTTCTATCAGTACCGATACCCGTGCCCGAAATTTCCAGTTTTTA
14995121 ACCCGATTATTACCCAAATGGGGTCAAATTTCGTTTGTTTACACTACAATAC
130 ACCCGATTATTACCCAAATGGGGTCAAATTTCGTTTGTTTACACTACAATAC
14995173 TATT
1 TATT
14995177 AAACTCTTCT
Statistics
Matches: 181, Mismatches: 0, Indels: 9
0.95 0.00 0.05
Matches are distributed among these distances:
181 106 0.59
182 36 0.20
183 39 0.22
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (181 bp):
TATTCTGTTATCAATGGTATCGATACTTCCTCACAATATCGAACCCCTTTTCGGTATCGATACTT
CTTGCATCATTATCGATACTGTTCTATCAGTACCGATACCCGTGCCCGAAATTTCCAGTTTTTAA
CCCGATTATTACCCAAATGGGGTCAAATTTCGTTTGTTTACACTACAATAC
Found at i:14996983 original size:28 final size:29
Alignment explanation
Indices: 14996918--14997060 Score: 215
Period size: 28 Copynumber: 5.1 Consensus size: 29
14996908 AGTCCATTAT
*
14996918 TCTTTTACTCAACAATGTTTAACCGTTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
* *
14996947 TCTTTTACTCAATAGTGTTT-ACCTTTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
14996975 TCTTTTACTCAACAGTGTTTAACCGTTC-
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
*
14997003 -C-TTTACTCAACAGTGTTTGACC-TTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
14997029 TCTTTTACTCAACAGTGTTTAACCGTTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
14997058 TCT
1 TCT
14997061 AACTGGCATA
Statistics
Matches: 102, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
25 3 0.03
26 20 0.20
27 2 0.02
28 46 0.45
29 31 0.30
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.43
Consensus pattern (29 bp):
TCTTTTACTCAACAGTGTTTAACCGTTCA
Found at i:14997032 original size:54 final size:56
Alignment explanation
Indices: 14996918--14997057 Score: 223
Period size: 54 Copynumber: 2.5 Consensus size: 56
14996908 AGTCCATTAT
* *
14996918 TCTTTTACTCAACAATGTTTAACCGTTCATCTTTTACTCAATAGTGTTTACCTTTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA-CTTTTACTCAACAGTGTTTACCTTTCA
14996975 TCTTTTACTCAACAGTGTTTAACCGTTC-C-TTTACTCAACAGTGTTTGACC-TTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCACTTTTACTCAACAGTGTTT-ACCTTTCA
14997029 TCTTTTACTCAACAGTGTTTAACCGTTCA
1 TCTTTTACTCAACAGTGTTTAACCGTTCA
14997058 TCTAACTGGC
Statistics
Matches: 79, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
54 48 0.61
55 4 0.05
57 27 0.34
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.43
Consensus pattern (56 bp):
TCTTTTACTCAACAGTGTTTAACCGTTCACTTTTACTCAACAGTGTTTACCTTTCA
Found at i:14997136 original size:81 final size:77
Alignment explanation
Indices: 14997030--14997179 Score: 219
Period size: 81 Copynumber: 1.9 Consensus size: 77
14997020 TGACCTTCAT
* *
14997030 CTTTTACTCAACAGTGTTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCATTCGCA
1 CTTTTACTCAACAGTATTTAACCGTTCA--TAACTAGCATAATTGACACCTTT-TGCCATT-GCA
14997095 CAATTAGGTCATTATC
62 CAATTAGGTCATTATC
* * *
14997111 CTTTTACTCAACGGTATTTAACCGTTCATAACTAGCATAATTGACACCTTTTTCCATTGCACAGT
1 CTTTTACTCAACAGTATTTAACCGTTCATAACTAGCATAATTGACACCTTTTGCCATTGCACAAT
14997176 TAGG
66 TAGG
14997180 CCTCAAAGGC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
77 10 0.16
78 6 0.09
79 22 0.34
81 26 0.41
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.36
Consensus pattern (77 bp):
CTTTTACTCAACAGTATTTAACCGTTCATAACTAGCATAATTGACACCTTTTGCCATTGCACAAT
TAGGTCATTATC
Found at i:14997257 original size:68 final size:66
Alignment explanation
Indices: 14997139--14997709 Score: 619
Period size: 68 Copynumber: 8.6 Consensus size: 66
14997129 TAACCGTTCA
* * *
14997139 TAACTAGCATAATTGACACCTTTTTCCATTGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCAT
1 TAACTGGCATAATTGACACCTTTTTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCAT
14997204 C
66 C
14997205 TAACTGGCATAATTGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
1 TAACTGGCATAATTGACACCTTT-T-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
14997270 ATC
64 ATC
* * *
14997273 TAACTGGC---A-T-A-A-----TTCAAATGCACAGTTAGGCTTAAAAGGCACTTAGCATTTCAT
1 TAACTGGCATAATTGACACCTTTTTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCAT
14997327 C
66 C
* * * *
14997328 TAACTGGTATAATTGACACCTTTCTGTCAAATGCATAGTTAGGCCTCAAAGGCACCTAGCATTTC
1 TAACTGGCATAATTGACACCTTT-T-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
14997393 ATC
64 ATC
* * * * * *
14997396 TAAATGACATAATTGAAAACTTTCTGTCAAATGCAGAGTTAGGCCTTAAA-GCACTTAGCCTTTC
1 TAACTGGCATAATTGACACCTTT-T-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
14997460 ATC
64 ATC
* * * * *
14997463 TAAATGGAATAATTGAAAACTTTTTGTCAAATGCACATTTAGGCCTCAAAGGCACTTA-CCATTT
1 TAACTGGCATAATTG-ACACCTTTT-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCC-TTT
14997527 CATC
63 CATC
* * * *
14997531 TAACTGACATAATTGCCACCTTTATGTCAAATGGACAATTAGGCCTCAAAGGCACTTAGCCTTTC
1 TAACTGGCATAATTGACACCTTT-T-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
*
14997596 ATA
64 ATC
* * * *
14997599 TAAATGGCATAATTGGCACCTTTCTGTCAAATGCATAGTTAGGCCTCAAAGACACTTAGCCTTTC
1 TAACTGGCATAATTGACACCTTT-T-TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTC
14997664 ATC
64 ATC
* * **
14997667 TAACTGGCATAATTGACACATTCTGTCAAATAAACAGTTAGGC
1 TAACTGGCATAATTGACACCTT-TTTCAAATGCACAGTTAGGC
14997710 TATTAATCTT
Statistics
Matches: 432, Mismatches: 52, Indels: 41
0.82 0.10 0.08
Matches are distributed among these distances:
55 46 0.11
56 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 1 0.00
62 1 0.00
63 1 0.00
64 1 0.00
65 1 0.00
66 22 0.05
67 75 0.17
68 277 0.64
69 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (66 bp):
TAACTGGCATAATTGACACCTTTTTCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCAT
C
Found at i:14997315 original size:55 final size:55
Alignment explanation
Indices: 14997231--14997341 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
14997221 CACCTTTCTA
* *
14997231 TCAAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAT
1 TCAAATGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAAT
* *
14997286 TCAAATGCACAGTTAGGCTTAAAAGGCACTTAGCATTTCATCTAACTGGTATAAT
1 TCAAATGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAAT
14997341 T
1 T
14997342 GACACCTTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (55 bp):
TCAAATGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAAT
Found at i:14997393 original size:123 final size:123
Alignment explanation
Indices: 14997168--14997409 Score: 394
Period size: 123 Copynumber: 2.0 Consensus size: 123
14997158 CTTTTTCCAT
* *
14997168 TGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTATC
1 TGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAATTGACACCTTTCTATC
* * * *
14997233 AAATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAATTCAAA
66 AAATGCACAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATTCAAA
* * *
14997291 TGCACAGTTAGGCTTAAAAGGCACTTAGCATTTCATCTAACTGGTATAATTGACACCTTTCTGTC
1 TGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAATTGACACCTTTCTATC
*
14997356 AAATGCATAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATT
66 AAATGCACAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATT
14997410 GAAAACTTTC
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
123 109 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (123 bp):
TGCACAGTTAGGCCTAAAAGGCACTTAGCATTTCATCTAACTGGCATAATTGACACCTTTCTATC
AAATGCACAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATTCAAA
Found at i:14997559 original size:135 final size:136
Alignment explanation
Indices: 14997286--14997709 Score: 541
Period size: 135 Copynumber: 3.1 Consensus size: 136
14997276 CTGGCATAAT
* * *
14997286 TCAAATGCACAGTTAGG-CTTAAAAGGCACTTAGCATTTCATCTAACTGGTATAATTGACACCTT
1 TCAAATGCACAGTTAGGCCTT-AAAGGCACTTAGCCTTTCATCTAAATGGAATAATTGACACCTT
* * *
14997350 TCTGTCAAATGCATAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATTGAAAA
65 TCTGTCAAATGCATAGTTAGGCCTCAAAGGCACTTACCATTTCATCTAACTGACATAATTGAAAA
*
14997415 CTTTCTG
130 CTTTATG
* * *
14997422 TCAAATGCAGAGTTAGGCCTTAAA-GCACTTAGCCTTTCATCTAAATGGAATAATTGAAAACTTT
1 TCAAATGCACAGTTAGGCCTTAAAGGCACTTAGCCTTTCATCTAAATGGAATAATTGACACCTTT
* * * ** *
14997486 TTGTCAAATGCACATTTAGGCCTCAAAGGCACTTACCATTTCATCTAACTGACATAATTGCCACC
66 CTGTCAAATGCATAGTTAGGCCTCAAAGGCACTTACCATTTCATCTAACTGACATAATTGAAAAC
14997551 TTTATG
131 TTTATG
* * * * * *
14997557 TCAAATGGACAATTAGGCCTCAAAGGCACTTAGCCTTTCATATAAATGGCATAATTGGCACCTTT
1 TCAAATGCACAGTTAGGCCTTAAAGGCACTTAGCCTTTCATCTAAATGGAATAATTGACACCTTT
* * *
14997622 CTGTCAAATGCATAGTTAGGCCTCAAAGACACTTAGCC-TTTCATCTAACTGGCATAATTG-ACA
66 CTGTCAAATGCATAGTTAGGCCTCAAAGGCACTTA-CCATTTCATCTAACTGACATAATTGAAAA
* *
14997685 CATTCTG
130 CTTTATG
**
14997692 TCAAATAAACAGTTAGGC
1 TCAAATGCACAGTTAGGC
14997710 TATTAATCTT
Statistics
Matches: 247, Mismatches: 38, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
135 136 0.55
136 106 0.43
137 5 0.02
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (136 bp):
TCAAATGCACAGTTAGGCCTTAAAGGCACTTAGCCTTTCATCTAAATGGAATAATTGACACCTTT
CTGTCAAATGCATAGTTAGGCCTCAAAGGCACTTACCATTTCATCTAACTGACATAATTGAAAAC
TTTATG
Found at i:14997641 original size:203 final size:204
Alignment explanation
Indices: 14997286--14997709 Score: 591
Period size: 203 Copynumber: 2.1 Consensus size: 204
14997276 CTGGCATAAT
* * **
14997286 TCAAATGCACAGTTAGGCTTAAAAGGCACTTAGCATTTCATCTAACTGGTATAATTGACACCTTT
1 TCAAATGCACAGTTAGGCCTAAAAGGCACTTACCATTTCATCTAACTGACATAATTGACACCTTT
* * * *
14997351 CTGTCAAATGCATAGTTAGGCCTCAAAGGCACCTAGCATTTCATCTAAATGACATAATTGAAAAC
66 ATGTCAAATGCACAATTAGGCCTCAAAGGCACCTAGCATTTCATATAAATGACATAATTGAAAAC
*
14997416 TTTCTGTCAAATGCAGAGTTAGGCCTTAAAG-CACTTAGCCTTTCATCTAAATGGAATAATTGAA
131 TTTCTGTCAAATGCAGAGTTAGGCCTCAAAGACACTTAGCCTTTCATCTAAATGGAATAATTGAA
14997480 AACTTTTTG
196 AACTTTTTG
* * *
14997489 TCAAATGCACATTTAGGCCTCAAAGGCACTTACCATTTCATCTAACTGACATAATTGCCACCTTT
1 TCAAATGCACAGTTAGGCCTAAAAGGCACTTACCATTTCATCTAACTGACATAATTGACACCTTT
* * * * ** *
14997554 ATGTCAAATGGACAATTAGGCCTCAAAGGCACTTAGCCTTTCATATAAATGGCATAATTGGCACC
66 ATGTCAAATGCACAATTAGGCCTCAAAGGCACCTAGCATTTCATATAAATGACATAATTGAAAAC
* * *
14997619 TTTCTGTCAAATGCATAGTTAGGCCTCAAAGACACTTAGCCTTTCATCTAACTGGCATAATTG-A
131 TTTCTGTCAAATGCAGAGTTAGGCCTCAAAGACACTTAGCCTTTCATCTAAATGGAATAATTGAA
* * *
14997683 CACATTCTG
196 AACTTTTTG
**
14997692 TCAAATAAACAGTTAGGC
1 TCAAATGCACAGTTAGGC
14997710 TATTAATCTT
Statistics
Matches: 192, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
203 163 0.85
204 29 0.15
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (204 bp):
TCAAATGCACAGTTAGGCCTAAAAGGCACTTACCATTTCATCTAACTGACATAATTGACACCTTT
ATGTCAAATGCACAATTAGGCCTCAAAGGCACCTAGCATTTCATATAAATGACATAATTGAAAAC
TTTCTGTCAAATGCAGAGTTAGGCCTCAAAGACACTTAGCCTTTCATCTAAATGGAATAATTGAA
AACTTTTTG
Found at i:14997969 original size:17 final size:17
Alignment explanation
Indices: 14997947--14997980 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14997937 CACTTAGTAT
14997947 GAATTTCTTAGTTCGCA
1 GAATTTCTTAGTTCGCA
14997964 GAATTTCTTAGTTCGCA
1 GAATTTCTTAGTTCGCA
14997981 CACATAGTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.41
Consensus pattern (17 bp):
GAATTTCTTAGTTCGCA
Found at i:15001495 original size:20 final size:20
Alignment explanation
Indices: 15001470--15001518 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
15001460 TCTAAATCCT
* * *
15001470 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAAATCCATTTTAG
15001490 TTTTCAAAAATCCATTTTAG
1 TTTTCAAAAATCCATTTTAG
*
15001510 CTTTCAAAA
1 TTTTCAAAA
15001519 GAAAAACATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (20 bp):
TTTTCAAAAATCCATTTTAG
Found at i:15002696 original size:10 final size:10
Alignment explanation
Indices: 15002681--15002718 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
15002671 TAATTGGATG
15002681 AAAAAAAAGA
1 AAAAAAAAGA
15002691 AAAAAAAAGA
1 AAAAAAAAGA
15002701 AAAAAAAATGA
1 AAAAAAAA-GA
*
15002712 AATAAAA
1 AAAAAAA
15002719 TAAATGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.05
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:15002697 original size:11 final size:11
Alignment explanation
Indices: 15002681--15002718 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15002671 TAATTGGATG
15002681 AAAAAAAAG-A
1 AAAAAAAAGAA
15002691 AAAAAAAAGAA
1 AAAAAAAAGAA
*
15002702 AAAAAAATGAA
1 AAAAAAAAGAA
15002713 ATAAAA
1 A-AAAA
15002719 TAAATGAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 9 0.36
11 12 0.48
12 4 0.16
ACGTcount: A:0.87, C:0.00, G:0.08, T:0.05
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:15002734 original size:15 final size:15
Alignment explanation
Indices: 15002697--15002735 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
15002687 AAGAAAAAAA
*
15002697 AAGA-AAAAAAAATG
1 AAGATAAAATAAATG
15002711 AA-ATAAAATAAATG
1 AAGATAAAATAAATG
15002725 AAGATAAAATA
1 AAGATAAAATA
15002736 TATACAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 13 0.59
15 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.15
Consensus pattern (15 bp):
AAGATAAAATAAATG
Found at i:15002849 original size:9 final size:10
Alignment explanation
Indices: 15002802--15002890 Score: 54
Period size: 11 Copynumber: 8.5 Consensus size: 10
15002792 GCAAAGAAAC
15002802 TAAAAATATAA
1 TAAAAATAT-A
* *
15002813 TGAAAATAAA
1 TAAAAATATA
*
15002823 TAAATAGTATA
1 TAAA-AATATA
*
15002834 AATAAAATA-A
1 TA-AAAATATA
15002844 TAAAAATATA
1 TAAAAATATA
*
15002854 TATAAAAAATA
1 TA-AAAATATA
*
15002865 TAAAAATGTA
1 TAAAAATATA
* *
15002875 TGTATAATATA
1 T-AAAAATATA
15002886 TAAAA
1 TAAAA
15002891 TACTAAATAG
Statistics
Matches: 57, Mismatches: 16, Indels: 11
0.68 0.19 0.13
Matches are distributed among these distances:
9 6 0.11
10 18 0.32
11 31 0.54
12 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:15002886 original size:21 final size:21
Alignment explanation
Indices: 15002802--15002890 Score: 83
Period size: 21 Copynumber: 4.2 Consensus size: 21
15002792 GCAAAGAAAC
*
15002802 TAAAAATATA-ATGAAAATAAA
1 TAAAAATATATAT-AAAATATA
* *
15002823 TAAATAGTATAAATAAAATA-A
1 TAAA-AATATATATAAAATATA
*
15002844 TAAAAATATATATAAAAAATA
1 TAAAAATATATATAAAATATA
* * *
15002865 TAAAAATGTATGTATAATATA
1 TAAAAATATATATAAAATATA
15002886 TAAAA
1 TAAAA
15002891 TACTAAATAG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
20 12 0.21
21 32 0.56
22 11 0.19
23 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.29
Consensus pattern (21 bp):
TAAAAATATATATAAAATATA
Found at i:15003073 original size:25 final size:25
Alignment explanation
Indices: 15003045--15003093 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
15003035 ACATAGATAA
* *
15003045 AATAATAATAATATAATATATATAT
1 AATAATAAGAAAATAATATATATAT
*
15003070 AATAATAGGAAAATAATATATATA
1 AATAATAAGAAAATAATATATATA
15003094 ACGCAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
AATAATAAGAAAATAATATATATAT
Found at i:15003583 original size:36 final size:36
Alignment explanation
Indices: 15003494--15003592 Score: 128
Period size: 37 Copynumber: 2.8 Consensus size: 36
15003484 ATGCTTGTGG
* ** * *
15003494 ATCCTA-TTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTAGGAGTTTGAATCCTAGCAAAACTCT
*
15003529 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTA-TTTTAGGAGTTTGAATCCTAGCAAAACTCT
15003566 ATCCTATTTTAGGAGTTTGAATCCTAG
1 ATCCTATTTTAGGAGTTTGAATCCTAG
15003593 TAGGACAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
35 6 0.11
36 21 0.38
37 29 0.52
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCCTAGCAAAACTCT
Found at i:15004682 original size:105 final size:106
Alignment explanation
Indices: 15004336--15005595 Score: 1771
Period size: 104 Copynumber: 12.0 Consensus size: 106
15004326 GCATTGTTCC
* * * * * * *
15004336 GAGTCCAATATCCTCCATCGTGAAGTTAAAAATTGGCTCTGGAATCGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGTTGTGAAGTT-GAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACA
* * * * * *
15004401 ACTAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTCGTCTC
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
15004443 CAGTCCAATATCCTTTGGTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
15004508 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTATCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15004549 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
15004614 CCAGCGGT-CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15004654 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTATGAAATTGAGAAG-TGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
15004718 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * * *
15004759 GAGT-TAATATCCTTCGATGTGAAGTTGAAATTGACTCAGAAATTAGGAAATTG-TTGTTGACAG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
15004822 CCAGCGGTCCCTTCGTCGTGAAGTTGAAC-TGCG-TGTTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
15004861 GAGTCCAATATCTTTCGATGTGAAGTT-AAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * *
15004925 -CAGCAGTCCCTTCGTCGCGAAGTTGAACTTGCGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
15004965 GAGTCCAATATCCTTCGTTGTGAAGTTGAAA-TGGCTCTGAAATTGGGAAGTTG-TTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
15005028 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15005069 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
15005134 CCAACGGTCCCTTCGTCGTGAAGTTAAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
15005175 GAGTCTAATATCCTTCGTTGTAAAGTTGAAATTAGCTCTAAAATTGGGAAGTT-TTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
15005239 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
15005280 GAGTCCAATATCCTTCGCTGTGAAGTTGAAGTTGGATTTGAAATTGGGAAATTGTTT-ATGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
*
15005344 -CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
15005384 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAG-T-TTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
15005447 -CAGCGGTCTCTTCGTCGTGAAGTTGAACTTGTGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
15005487 GAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTG-AATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* * * * * *
15005551 TCAGCCGTCCCTTTGTTGTGAAGTTGAACTTGTGTTGTCTC
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
15005592 GAGT
1 GAGT
15005596 GGCACGATAT
Statistics
Matches: 1037, Mismatches: 101, Indels: 32
0.89 0.09 0.03
Matches are distributed among these distances:
102 70 0.07
103 131 0.13
104 306 0.30
105 274 0.26
106 235 0.23
107 21 0.02
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:15006132 original size:18 final size:19
Alignment explanation
Indices: 15006103--15006139 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
15006093 TGTTGAATCC
*
15006103 CCAAATAATGCCTCAATAT
1 CCAAATAATGCCACAATAT
15006122 CCAAA-AATGCCACAATAT
1 CCAAATAATGCCACAATAT
15006140 TTGATGTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.46, C:0.27, G:0.05, T:0.22
Consensus pattern (19 bp):
CCAAATAATGCCACAATAT
Found at i:15006572 original size:22 final size:22
Alignment explanation
Indices: 15006546--15006601 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
15006536 TTGTGTTTGG
*
15006546 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
15006568 TCAAAGGTTTGACATTTGATGC
1 TCAAAGGTTTGACATTTGATGC
15006590 TCAAAGGTTTGA
1 TCAAAGGTTTGA
15006602 TGGGGTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGACATTTGATGC
Found at i:15007220 original size:17 final size:16
Alignment explanation
Indices: 15007198--15007261 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 16
15007188 TTTTGTCCCT
15007198 TTTTCTTTTTTTATTT-
1 TTTTCTTTTTTT-TTTG
15007214 TTGTTCTTTCTTTTTTTG
1 TT-TTCTTT-TTTTTTTG
* *
15007232 TTTTCTTCTTTTTGCTTC
1 TTTTCTT-TTTTT-TTTG
15007250 TTTTCTTTTTTT
1 TTTTCTTTTTTT
15007262 GCCCTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
16 2 0.05
17 23 0.56
18 16 0.39
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.81
Consensus pattern (16 bp):
TTTTCTTTTTTTTTTG
Found at i:15007227 original size:20 final size:21
Alignment explanation
Indices: 15007199--15007242 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
15007189 TTTGTCCCTT
*
15007199 TTTCTTTTTTTAT-TTTTGTTC
1 TTTCTTTTTTT-TGTTTTCTTC
15007220 TTTC-TTTTTTTGTTTTCTTC
1 TTTCTTTTTTTTGTTTTCTTC
15007240 TTT
1 TTT
15007243 TTGCTTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 16 0.76
21 4 0.19
ACGTcount: A:0.02, C:0.11, G:0.05, T:0.82
Consensus pattern (21 bp):
TTTCTTTTTTTTGTTTTCTTC
Found at i:15007227 original size:26 final size:26
Alignment explanation
Indices: 15007198--15007261 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
15007188 TTTTGTCCCT
15007198 TTTTCTTTTTTTATT-TTTGTT-CTTTC
1 TTTTCTTTTTTTATTCTTT-TTGC-TTC
*
15007224 TTTT-TTTGTTTTCTTCTTTTTGCTTC
1 TTTTCTTT-TTTTATTCTTTTTGCTTC
15007250 TTTTCTTTTTTT
1 TTTTCTTTTTTT
15007262 GCCCTTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
25 3 0.09
26 23 0.70
27 7 0.21
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.81
Consensus pattern (26 bp):
TTTTCTTTTTTTATTCTTTTTGCTTC
Found at i:15007240 original size:16 final size:15
Alignment explanation
Indices: 15007211--15007262 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 15
15007201 TCTTTTTTTA
15007211 TTTTTGTTCTTTCTT
1 TTTTTGTTCTTTCTT
15007226 TTTTTG-T-TTTCTT
1 TTTTTGTTCTTTCTT
15007239 CTTTTTGCTTCTTTTCTT
1 -TTTTTG-TTC-TTTCTT
15007257 TTTTTG
1 TTTTTG
15007263 CCCTTTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 6 0.19
14 7 0.22
15 6 0.19
16 1 0.03
17 6 0.19
18 6 0.19
ACGTcount: A:0.00, C:0.13, G:0.08, T:0.79
Consensus pattern (15 bp):
TTTTTGTTCTTTCTT
Found at i:15007259 original size:30 final size:29
Alignment explanation
Indices: 15007197--15007261 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
15007187 TTTTTGTCCC
*
15007197 TTTTTCTTTTTTTATTTTTGTTCTTTCTT
1 TTTTTCTTTTCTTATTTTTGTTCTTTCTT
* *
15007226 TTTTTGTTTTCTTCTTTTTGCTTCTTTTCTT
1 TTTTTCTTTTCTTATTTTTG-TTC-TTTCTT
15007257 TTTTT
1 TTTTT
15007262 GCCCTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 17 0.55
30 3 0.10
31 11 0.35
ACGTcount: A:0.02, C:0.12, G:0.05, T:0.82
Consensus pattern (29 bp):
TTTTTCTTTTCTTATTTTTGTTCTTTCTT
Found at i:15007270 original size:17 final size:18
Alignment explanation
Indices: 15007232--15007269 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
15007222 TCTTTTTTTG
*
15007232 TTTTCTTCTTTTTGCTTC
1 TTTTCTTCTTTTTGCCTC
15007250 TTTTCTT-TTTTTGCC-C
1 TTTTCTTCTTTTTGCCTC
15007266 TTTT
1 TTTT
15007270 TATTCTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 7 0.37
18 7 0.37
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTTCTTCTTTTTGCCTC
Found at i:15011548 original size:19 final size:19
Alignment explanation
Indices: 15011489--15011552 Score: 55
Period size: 19 Copynumber: 3.4 Consensus size: 19
15011479 ACCAATAATA
*
15011489 ATAAACATAAATAATTG--G
1 ATAAA-ATAAATAAATGAAG
*
15011507 ATGAAAA-AAATGAAAT-AAA
1 AT-AAAATAAAT-AAATGAAG
15011526 ATAAAATAAATAAATGAAG
1 ATAAAATAAATAAATGAAG
15011545 ATAAAATA
1 ATAAAATA
15011553 TATATACAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 11
0.73 0.06 0.22
Matches are distributed among these distances:
17 4 0.11
18 14 0.38
19 19 0.51
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (19 bp):
ATAAAATAAATAAATGAAG
Found at i:15011851 original size:29 final size:29
Alignment explanation
Indices: 15011819--15011889 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
15011809 AAGAATATAT
* *
15011819 ATATATAACATTAGGAAATATAG-TAAAAA
1 ATATATAA-ATAAGGAAACATAGATAAAAA
*
15011848 ATATAGTAAATAAGTAAACATAGATAAAAA
1 ATATA-TAAATAAGGAAACATAGATAAAAA
15011878 ATA-ATAATATAA
1 ATATATAA-ATAA
15011890 TATATATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 3 0.08
29 21 0.58
30 12 0.33
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (29 bp):
ATATATAAATAAGGAAACATAGATAAAAA
Found at i:15011919 original size:21 final size:21
Alignment explanation
Indices: 15011878--15011926 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
15011868 TAGATAAAAA
* *
15011878 ATAATAATATAATATATATAT
1 ATAATAATAGAAAATATATAT
15011899 ATAATAATAGGAAAATAATATAAT
1 ATAATAATA-GAAAAT-ATAT-AT
15011923 ATAA
1 ATAA
15011927 CGCAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 9 0.39
22 4 0.17
23 4 0.17
24 6 0.26
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
ATAATAATAGAAAATATATAT
Found at i:15012427 original size:37 final size:37
Alignment explanation
Indices: 15012377--15012469 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
15012367 AGGCTTGTGG
* *
15012377 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAAA-TCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCA-AAATTCT
* **
15012414 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAATTCT
* *
15012451 ATCCTAATTTTAGTAGTTT
1 ATCCTATTTTTAGGAGTTT
15012470 GAATCCTAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 3 0.06
37 45 0.94
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATAATAGCAAAATTCT
Found at i:15016174 original size:79 final size:79
Alignment explanation
Indices: 15016042--15016200 Score: 255
Period size: 79 Copynumber: 2.0 Consensus size: 79
15016032 ACTCTGTCCC
* *
15016042 ATTTCCAATGAGGAATCTGAATGGGCTAAAGTAATCCTGAGGGAACCTGGTGTTCTGCTTTAACC
1 ATTTCCAACGAGGAATCTGAATGGGCTAAAGTAATCCTGAGGGAACCTAGTGTTCTGCTTTAACC
*
15016107 TACTGGCACATTAG
66 TACTGGCACACTAG
* * *
15016121 ATTTCCAACGAGGAATCTGAATGGGCTAAAGTAGTCCTGAGGGAACCTAGTGTTTTTCTTTAACC
1 ATTTCCAACGAGGAATCTGAATGGGCTAAAGTAATCCTGAGGGAACCTAGTGTTCTGCTTTAACC
*
15016186 TGCTGGCACACTAG
66 TACTGGCACACTAG
15016200 A
1 A
15016201 CACCTAGCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (79 bp):
ATTTCCAACGAGGAATCTGAATGGGCTAAAGTAATCCTGAGGGAACCTAGTGTTCTGCTTTAACC
TACTGGCACACTAG
Found at i:15023020 original size:31 final size:31
Alignment explanation
Indices: 15022982--15023043 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
15022972 AATGTTAGTT
15022982 TAATTTAGTTTAATAATAACATTTCTCTTGG
1 TAATTTAGTTTAATAATAACATTTCTCTTGG
**
15023013 TAATTTAGTTTAATAATAATGTTTCTCTTGG
1 TAATTTAGTTTAATAATAACATTTCTCTTGG
15023044 CCCTTTTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.50
Consensus pattern (31 bp):
TAATTTAGTTTAATAATAACATTTCTCTTGG
Found at i:15038532 original size:29 final size:30
Alignment explanation
Indices: 15038499--15038557 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
15038489 AAATTTTTTG
15038499 TTAGTGACTAAAATGA-AAGTTTT-AAAAGT
1 TTAGTGACTAAAAT-ATAAGTTTTGAAAAGT
*
15038528 TTAGTGGCTAAAATATAAGTTTTGAAAAGT
1 TTAGTGACTAAAATATAAGTTTTGAAAAGT
15038558 GTAAGGACCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 20 0.74
30 6 0.22
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (30 bp):
TTAGTGACTAAAATATAAGTTTTGAAAAGT
Found at i:15043674 original size:2 final size:2
Alignment explanation
Indices: 15043667--15043700 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
15043657 ATTTGTTTCA
15043667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15043701 TCTATTAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15044501 original size:21 final size:20
Alignment explanation
Indices: 15044476--15044519 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
15044466 ATAAATTTTG
15044476 TTTCAAAAATAAAACAAAATA
1 TTTC-AAAATAAAACAAAATA
* *
15044497 TTTCAATATAAAATAAAATA
1 TTTCAAAATAAAACAAAATA
15044517 TTT
1 TTT
15044520 GTTTAACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (20 bp):
TTTCAAAATAAAACAAAATA
Found at i:15052194 original size:112 final size:111
Alignment explanation
Indices: 15051997--15052226 Score: 300
Period size: 112 Copynumber: 2.1 Consensus size: 111
15051987 ACCGAAGTAC
* * *
15051997 CGAAATGGTAATTCACCTCATTATAAATACCATGGGTGGAACCTTTTATGCCGAAAATGCACCAT
1 CGAAATGGTAATTCACCTCATTATAAATACCATGGGTGGAACCTTTTATGCCAAAAATACACCAC
* **
15052062 TACGCATTAAGAAAAATTGATCGATAACTTTCATACATGAAGTATGT
66 TACGCATTAAGAAAAATTGATCGAT-ACTATCATACACAAAGTATGT
* * * * * *
15052109 CGAAATGGTAATTCATCTCATTATGAATAGCATGGGTGGCACCTTTTATGCCAAAAATATACCGC
1 CGAAATGGTAATTCACCTCATTATAAATACCATGGGTGGAACCTTTTATGCCAAAAATACACCAC
**
15052174 TATTCATTAA-ACAAAATTGATCGATACTATCATACACAAAGTATGT
66 TACGCATTAAGA-AAAATTGATCGATACTATCATACACAAAGTATGT
*
15052220 CAAAATG
1 CGAAATG
15052227 CACCTATAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
111 25 0.25
112 77 0.75
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (111 bp):
CGAAATGGTAATTCACCTCATTATAAATACCATGGGTGGAACCTTTTATGCCAAAAATACACCAC
TACGCATTAAGAAAAATTGATCGATACTATCATACACAAAGTATGT
Found at i:15062846 original size:23 final size:24
Alignment explanation
Indices: 15062819--15062865 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
15062809 TAATATAATT
*
15062819 AAATTTTAAATTCA-ATTAATGAG
1 AAATTTCAAATTCACATTAATGAG
*
15062842 AAATTTCAATTTCACCATTAATGA
1 AAATTTCAAATTCA-CATTAATGA
15062866 ATAATGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATTTCAAATTCACATTAATGAG
Found at i:15062904 original size:15 final size:15
Alignment explanation
Indices: 15062884--15062912 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15062874 AATTACCAAA
15062884 TTCCATTAAAATATC
1 TTCCATTAAAATATC
15062899 TTCCATTAAAATAT
1 TTCCATTAAAATAT
15062913 TTCATGGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (15 bp):
TTCCATTAAAATATC
Found at i:15070553 original size:16 final size:16
Alignment explanation
Indices: 15070532--15070563 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15070522 TTCAATCAAG
15070532 CTTTTCATGACATTTA
1 CTTTTCATGACATTTA
*
15070548 CTTTTCATGGCATTTA
1 CTTTTCATGACATTTA
15070564 TACAGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.19, G:0.09, T:0.50
Consensus pattern (16 bp):
CTTTTCATGACATTTA
Found at i:15071425 original size:10 final size:10
Alignment explanation
Indices: 15071410--15071439 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
15071400 GGTAAAAGTA
15071410 AGGGAATTTG
1 AGGGAATTTG
15071420 AGGGAATTTG
1 AGGGAATTTG
*
15071430 AGGAAATTTG
1 AGGGAATTTG
15071440 GGTAAAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.30
Consensus pattern (10 bp):
AGGGAATTTG
Found at i:15076973 original size:20 final size:21
Alignment explanation
Indices: 15076938--15076978 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
15076928 AAATATCATG
15076938 TTAGTGACTTTATTGAAAAGAT
1 TTAGTGAC-TTATTGAAAAGAT
15076960 TTAGTGAC-TATTGAAAAGA
1 TTAGTGACTTATTGAAAAGA
15076979 CTCAAGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
22 8 0.42
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.37
Consensus pattern (21 bp):
TTAGTGACTTATTGAAAAGAT
Done.