genome.fa.s9641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009641.1 Hibiscus syriacus cultivar Beakdansim tig00117051_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93586

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--719	105	7.0	106	92	4	1116	23	18	26	32	1.97
1--725	314	2.3	310	90	5	1128	23	18	26	32	1.97
796--2400	103	15.5	106	91	4	2465	23	17	25	32	1.97
796--2400	209	7.7	212	90	4	2474	23	17	25	32	1.97
6173--6222	16	3.1	16	97	0	91	54	6	10	30	1.58
8658--8733	39	1.9	39	100	0	152	35	21	25	18	1.95
17820--17873	3	18.0	3	81	11	58	29	1	0	68	1.00
17819--17866	13	3.7	13	81	15	55	27	2	0	70	0.98
19352--19395	20	2.2	20	83	0	52	34	4	0	61	1.16
20197--20238	17	2.5	17	96	0	75	19	16	19	45	1.86
22369--22423	20	2.8	19	80	2	56	20	7	9	63	1.47
22415--22461	12	4.1	12	86	8	71	23	19	6	51	1.70
24153--24314	65	2.5	65	86	6	213	29	24	17	27	1.98
30030--30088	31	1.9	31	92	0	100	40	6	10	42	1.65
30113--30155	22	2.0	22	100	0	86	51	13	0	34	1.42
30115--30163	22	2.2	22	88	3	71	55	14	0	30	1.40
30103--30519	54	7.8	54	83	9	525	52	12	0	35	1.39
30135--30484	32	12.4	32	72	25	317	52	13	0	34	1.41
30279--30321	22	2.0	22	95	0	77	48	16	0	34	1.46
30281--30329	22	2.2	22	85	3	62	53	16	0	30	1.43
30333--30375	22	2.0	22	100	0	86	51	13	0	34	1.42
30335--30383	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30387--30429	22	2.0	22	100	0	86	51	13	0	34	1.42
30389--30437	22	2.2	22	88	3	71	55	14	0	30	1.40
30464--30566	15	6.5	15	79	15	109	52	2	0	44	1.16
32702--32745	21	2.1	21	82	0	52	9	43	15	31	1.79
33803--34014	65	3.3	65	80	10	238	28	24	19	27	1.98
33984--34032	19	2.6	19	84	9	57	24	28	20	26	1.99
36767--37170	123	3.3	123	88	3	609	39	16	18	25	1.91
37067--37254	84	2.2	84	90	0	286	39	17	14	28	1.89
37217--37579	136	2.6	138	81	5	448	39	16	19	25	1.91
37832--37885	3	17.0	3	81	7	54	31	1	0	66	1.02
39354--39383	2	15.0	2	100	0	60	50	0	0	50	1.00
40835--40893	2	30.0	2	96	3	111	50	0	0	49	1.00
43947--44054	43	2.5	43	98	0	207	30	12	24	32	1.93
45223--45301	39	2.0	39	97	0	149	16	26	21	35	1.94
46237--46291	23	2.4	24	82	11	62	12	16	14	56	1.68
46746--46790	25	1.9	25	86	13	69	24	6	11	57	1.57
52281--52510	42	5.4	43	90	2	340	18	26	23	31	1.98
52281--52510	88	2.7	85	88	4	347	18	26	23	31	1.98
56756--56795	20	2.0	20	100	0	80	25	20	20	35	1.96
58812--58863	19	2.7	19	96	0	95	34	15	11	38	1.83
69137--69180	20	2.1	21	91	4	72	27	29	27	15	1.96
69170--69217	17	2.9	17	93	6	82	10	22	47	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69137--69180	7	6.4	7	92	5	72	27	29	27	15	1.96
78237--78352	57	2.0	57	96	0	214	35	28	14	21	1.93
93181--93311	46	2.8	46	84	6	167	27	12	22	37	1.91

Tables:   1

The End!