Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 26 of 41
Found at i:5368081 original size:22 final size:22
Alignment explanation
Indices: 5368050--5368096 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
5368040 CGTGATTTCT
* *
5368050 GTGCTTTCTCCTTGCAGAACTC
1 GTGCTCTCTCCTTGCAGAACCC
5368072 GTGCTCTCTCCTTGCAGAACCC
1 GTGCTCTCTCCTTGCAGAACCC
5368094 GTG
1 GTG
5368097 ATTTCTCACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.34, G:0.21, T:0.32
Consensus pattern (22 bp):
GTGCTCTCTCCTTGCAGAACCC
Found at i:5368103 original size:22 final size:22
Alignment explanation
Indices: 5368054--5368103 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
5368044 ATTTCTGTGC
* *
5368054 TTTCTCCTTGCAGAACTCGTGC
1 TTTCTCCTTGCAGAACCCGTGA
*
5368076 TCTCTCCTTGCAGAACCCGTGA
1 TTTCTCCTTGCAGAACCCGTGA
5368098 TTTCTC
1 TTTCTC
5368104 ACGTCCAGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.14, C:0.34, G:0.16, T:0.36
Consensus pattern (22 bp):
TTTCTCCTTGCAGAACCCGTGA
Found at i:5368168 original size:34 final size:34
Alignment explanation
Indices: 5368125--5368209 Score: 143
Period size: 34 Copynumber: 2.5 Consensus size: 34
5368115 CATGCACAGC
*
5368125 ACTGAAGACGCCGAGATTTCCTACGAAGAATCCA
1 ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
*
5368159 ACTGAAGACGCCGAGAGTTCCTATGAAGAATCCA
1 ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
*
5368193 ACTGAAGACGCCAAGAG
1 ACTGAAGACGCCGAGAG
5368210 ATCAATCATA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (34 bp):
ACTGAAGACGCCGAGAGTTCCTACGAAGAATCCA
Found at i:5391007 original size:23 final size:21
Alignment explanation
Indices: 5390955--5391016 Score: 81
Period size: 23 Copynumber: 2.9 Consensus size: 21
5390945 TTTTAGTGCA
*
5390955 GAGGGAATCGA-TCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
5390975 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
5390996 GAAGGGGAACCGATTCCCCCC
1 G-A-GGGAACCGATTCCCCCC
5391017 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 1 0.03
23 16 0.44
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:5411794 original size:20 final size:21
Alignment explanation
Indices: 5411763--5411801 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
5411753 GTAATATAAC
5411763 AATTTGGAGAGAAGAACAAGT
1 AATTTGGAGAGAAGAACAAGT
*
5411784 AATTT-GAGAGAATAACAA
1 AATTTGGAGAGAAGAACAA
5411802 AGGCTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (21 bp):
AATTTGGAGAGAAGAACAAGT
Found at i:5424617 original size:18 final size:20
Alignment explanation
Indices: 5424594--5424630 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5424584 ATTGATATTT
5424594 TAAAA-TTAT-AAAAATATC
1 TAAAATTTATGAAAAATATC
5424612 TAAAATTTATGAAAAATAT
1 TAAAATTTATGAAAAATAT
5424631 ATTTAGAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
TAAAATTTATGAAAAATATC
Found at i:5429947 original size:9 final size:9
Alignment explanation
Indices: 5429933--5429971 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
5429923 AGGGTCGGAT
5429933 GGTGTAACC
1 GGTGTAACC
5429942 GGTGTAACC
1 GGTGTAACC
5429951 GGTGTAACC
1 GGTGTAACC
5429960 GGTGTAACC
1 GGTGTAACC
5429969 GGT
1 GGT
5429972 TTCGGTTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.36, T:0.23
Consensus pattern (9 bp):
GGTGTAACC
Found at i:5430080 original size:24 final size:26
Alignment explanation
Indices: 5430022--5430083 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
5430012 TTTTTCGGAT
**
5430022 AAAAAACCGGTTTTTTGTCCGGTTTGA
1 AAAAAACCGGTTTTTAATCCGG-TTGA
5430049 AAAAAACCGGTTTTTAATCCGG-T-A
1 AAAAAACCGGTTTTTAATCCGGTTGA
5430073 AAAAAACCGGT
1 AAAAAACCGGT
5430084 CGTTCAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 12 0.36
25 1 0.03
27 20 0.61
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (26 bp):
AAAAAACCGGTTTTTAATCCGGTTGA
Found at i:5434060 original size:13 final size:13
Alignment explanation
Indices: 5434042--5434068 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
5434032 TTGATTGAAC
5434042 TTCTAAAAATTAT
1 TTCTAAAAATTAT
5434055 TTCTAAAAATTAT
1 TTCTAAAAATTAT
5434068 T
1 T
5434069 AAATGATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TTCTAAAAATTAT
Found at i:5434104 original size:31 final size:31
Alignment explanation
Indices: 5434063--5434154 Score: 103
Period size: 32 Copynumber: 2.9 Consensus size: 31
5434053 ATTTCTAAAA
*
5434063 ATTATTAAATGATTGTTAAATTTATCAAACT
1 ATTATAAAATGATTGTTAAATTTATCAAACT
* *** * *
5434094 GTTATAAAATGATAACTAAATTTTATTAAATT
1 ATTATAAAATGATTGTTAAA-TTTATCAAACT
*
5434126 ATTATAAAATCATTGTTAAATTTATCAAA
1 ATTATAAAATGATTGTTAAATTTATCAAA
5434155 TAATGATATT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
31 23 0.49
32 24 0.51
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (31 bp):
ATTATAAAATGATTGTTAAATTTATCAAACT
Found at i:5441863 original size:27 final size:27
Alignment explanation
Indices: 5441825--5441879 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
5441815 TAGTTTACAT
5441825 TAGTTTGCAACTGATTTTGACGATTGC
1 TAGTTTGCAACTGATTTTGACGATTGC
*
5441852 TAGTTTGCAACTGATTTTGATGATTGC
1 TAGTTTGCAACTGATTTTGACGATTGC
5441879 T
1 T
5441880 TTGGCTTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.44
Consensus pattern (27 bp):
TAGTTTGCAACTGATTTTGACGATTGC
Found at i:5447229 original size:18 final size:19
Alignment explanation
Indices: 5447194--5447231 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
5447184 CACGGAATGT
5447194 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
5447214 AAGATTACCA-GGGAATAA
1 AAGATTACCAGGGGAATAA
5447232 GATTATTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:5459053 original size:18 final size:18
Alignment explanation
Indices: 5459032--5459088 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
5459022 TTTCCTATAC
*
5459032 TTTATTTATTTCATTTTT
1 TTTATTTATTTCATTTTA
*
5459050 TTTATTT-TCCTCATTTTA
1 TTTATTTAT-TTCATTTTA
5459068 TTTATTTATTTTC-TTTTA
1 TTTATTTA-TTTCATTTTA
5459086 TTT
1 TTT
5459089 TCGATTTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 29 0.88
19 2 0.06
20 1 0.03
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTATTTATTTCATTTTA
Found at i:5459073 original size:32 final size:32
Alignment explanation
Indices: 5459006--5459090 Score: 111
Period size: 32 Copynumber: 2.6 Consensus size: 32
5458996 TATGTATATA
5459006 TTATTTTCATTATTATTTTCCTATACTTTATTTAT
1 TTATTTTC-TT-TTATTTTCCTATA-TTTATTTAT
5459041 TTCATTTT-TTTTATTTTCCTCAT-TTTATTTAT
1 TT-ATTTTCTTTTATTTTCCT-ATATTTATTTAT
5459073 TTATTTTCTTTTATTTTC
1 TTATTTTCTTTTATTTTC
5459091 GATTTCTTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
31 5 0.11
32 21 0.45
33 10 0.21
34 4 0.09
35 2 0.04
36 5 0.11
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (32 bp):
TTATTTTCTTTTATTTTCCTATATTTATTTAT
Found at i:5470747 original size:64 final size:65
Alignment explanation
Indices: 5470646--5470899 Score: 411
Period size: 65 Copynumber: 3.9 Consensus size: 65
5470636 GTGCCACTTA
*
5470646 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAAC-AAAATTTCCCAGTGTC
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTATC
*
5470710 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCGACAAAAATTTCCCAGTATC
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTATC
* * *
5470775 AAACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTTTA
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTATC
* * *
5470840 AGACAGCGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACAACTTTCC
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAA-AA-TTTCC
5470900 AATTTCAGAG
Statistics
Matches: 177, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
64 47 0.27
65 123 0.69
66 2 0.01
67 5 0.03
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.20
Consensus pattern (65 bp):
AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTATC
Found at i:5470970 original size:106 final size:106
Alignment explanation
Indices: 5470840--5471058 Score: 368
Period size: 106 Copynumber: 2.1 Consensus size: 106
5470830 TCCCAGTTTA
*
5470840 AGACAGCGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACAACTTTCCAA-TT
1 AGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAAC-ACTTTCCAAGTT
*
5470904 TCAGAGCCAATTTCCACTTCACAGCGAAGGATATTGGACTCG
65 TCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
*
5470946 AGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAACACTTTCCAAGTTT
1 AGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACACTTTCCAAGTTT
* *
5471011 CAGAGTCAATTTCAACTTCACAGCGAAGGATATTGGCCTCG
66 CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
*
5471052 AAACAAC
1 AGACAAC
5471059 ACAACTTGCA
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
105 9 0.08
106 97 0.92
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (106 bp):
AGACAACGCAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACACTTTCCAAGTTT
CAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCG
Found at i:5473051 original size:18 final size:18
Alignment explanation
Indices: 5473030--5473086 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
5473020 TTTCCTATAC
*
5473030 TTTATTTATTTCATTTTT
1 TTTATTTATTTCATTTTA
*
5473048 TTTATTT-TCCTCATTTTA
1 TTTATTTAT-TTCATTTTA
5473066 TTTATTTATTTTC-TTTTA
1 TTTATTTA-TTTCATTTTA
5473084 TTT
1 TTT
5473087 TCGGTTTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 29 0.88
19 2 0.06
20 1 0.03
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTATTTATTTCATTTTA
Found at i:5473071 original size:32 final size:32
Alignment explanation
Indices: 5473004--5473088 Score: 111
Period size: 32 Copynumber: 2.6 Consensus size: 32
5472994 TATGTATATA
5473004 TTATTTTCATTATTATTTTCCTATACTTTATTTAT
1 TTATTTTC-TT-TTATTTTCCTATA-TTTATTTAT
5473039 TTCATTTT-TTTTATTTTCCTCAT-TTTATTTAT
1 TT-ATTTTCTTTTATTTTCCT-ATATTTATTTAT
5473071 TTATTTTCTTTTATTTTC
1 TTATTTTCTTTTATTTTC
5473089 GGTTTCTTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
31 5 0.11
32 21 0.45
33 10 0.21
34 4 0.09
35 2 0.04
36 5 0.11
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (32 bp):
TTATTTTCTTTTATTTTCCTATATTTATTTAT
Found at i:5473892 original size:21 final size:21
Alignment explanation
Indices: 5473868--5473908 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
5473858 TTAGTAAAAA
*
5473868 ATTATAAACATATACTATTTT
1 ATTATAAACACATACTATTTT
* *
5473889 ATTATCATCACATACTATTT
1 ATTATAAACACATACTATTT
5473909 AAAAATAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATAAACACATACTATTTT
Found at i:5474338 original size:18 final size:18
Alignment explanation
Indices: 5474317--5474353 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
5474307 TTACATATTT
5474317 AGTCCTCATTACTTACTC
1 AGTCCTCATTACTTACTC
5474335 AGTCCTCATTACTTACTC
1 AGTCCTCATTACTTACTC
5474353 A
1 A
5474354 TTCTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.38
Consensus pattern (18 bp):
AGTCCTCATTACTTACTC
Found at i:5475893 original size:16 final size:16
Alignment explanation
Indices: 5475874--5475904 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5475864 TTATACGTAC
*
5475874 AATATTTTATAAATTT
1 AATATTTTACAAATTT
5475890 AATATTTTACAAATT
1 AATATTTTACAAATT
5475905 AATTTAATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (16 bp):
AATATTTTACAAATTT
Found at i:5477551 original size:72 final size:72
Alignment explanation
Indices: 5477414--5477551 Score: 176
Period size: 72 Copynumber: 1.9 Consensus size: 72
5477404 AAAGGAAAAT
* * *
5477414 GAAGTTTAGAGGGCTTGTAACTTTGTTTATTAGACAAAACATGCCTTGAACGATTATGTGGGTGT
1 GAAGTTTAAAGGGCTTGTAACTTTGTTTATCAGACAAAACATGCCTTGAACGATTATGTGCGTGT
5477479 GTGTAAA
66 GTGTAAA
*
5477486 GAAGTTTAAAGGGCTTGTAACTTT-TGTTATCAG-CTAAAACATGCTTTGAA-GA-TATGCATGC
1 GAAGTTTAAAGGGCTTGTAACTTTGT-TTATCAGAC-AAAACATGCCTTGAACGATTATG--TGC
5477547 GTGTG
62 GTGTG
5477552 AGTGAATTCC
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
70 4 0.07
71 4 0.07
72 50 0.86
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (72 bp):
GAAGTTTAAAGGGCTTGTAACTTTGTTTATCAGACAAAACATGCCTTGAACGATTATGTGCGTGT
GTGTAAA
Found at i:5479794 original size:85 final size:85
Alignment explanation
Indices: 5479645--5479808 Score: 260
Period size: 85 Copynumber: 1.9 Consensus size: 85
5479635 AGATTCATGC
*
5479645 CATTTCATATTTAAAAAGAAAAAGAGAAGTATTGGATAGGATAAAAAAATCTGAAGAAAAAAAAA
1 CATTTCATATTTAAAAAGAAAAAGAGAAGCATTGGATAGGATAAAAAAATCTGAAGAAAAAAAAA
*
5479710 CCCAAGCAAAGCTTGATGGT
66 CCCAACCAAAGCTTGATGGT
*
5479730 CATTTCATATTTAAAAAGAAAAAGAG-A-CATTGGATAGGATAATAAAATCTGGAAGAAAATAAA
1 CATTTCATATTTAAAAAGAAAAAGAGAAGCATTGGATAGGATAAAAAAATCT-GAAGAAAA-AAA
*
5479793 AACCCAACCAACGCTT
64 AACCCAACCAAAGCTT
5479809 TCTTGTTTAG
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
83 21 0.29
84 9 0.12
85 43 0.59
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (85 bp):
CATTTCATATTTAAAAAGAAAAAGAGAAGCATTGGATAGGATAAAAAAATCTGAAGAAAAAAAAA
CCCAACCAAAGCTTGATGGT
Found at i:5480058 original size:2 final size:2
Alignment explanation
Indices: 5480046--5480079 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
5480036 TTGAATTTGA
5480046 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5480080 AAAGAATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:5487436 original size:44 final size:44
Alignment explanation
Indices: 5487326--5487818 Score: 790
Period size: 44 Copynumber: 11.0 Consensus size: 44
5487316 TCATTTAATC
* * *
5487326 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAATC
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTA-TAATTT
* * * *
5487371 CCTAAGCTCGTAAGTTTATTTTACCAATATACTTA-TCATTATTC
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACT-ATAATTT
* *
5487415 CATAAGCTCGTAAGCTTATTTTACCAGTATACTTATTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487459 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTTCATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTAC-------T-ATAATTT
5487511 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
*
5487555 CATAAGCTCGTAAGCTTATTTTACCAATATACATACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487599 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487643 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
*
5487687 CATAAGATCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487731 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487775 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5487819 GCATCACTGA
Statistics
Matches: 422, Mismatches: 16, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
44 342 0.81
45 36 0.09
51 1 0.00
52 43 0.10
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (44 bp):
CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
Found at i:5488020 original size:59 final size:59
Alignment explanation
Indices: 5487955--5488513 Score: 482
Period size: 59 Copynumber: 9.4 Consensus size: 59
5487945 ATATACTTAA
* * * *
5487955 TATGATTTCCTTCTCATTTTAGCACACGAAGTGCCCTAT-TCGAGAATCCATAC-CATTAG
1 TATGATTTCCTTATCATTTTAGCACACTAAGTGCCCTATATGGA-AATCCATACAC-TCAG
* * ** *
5488014 TATGA-TTCCTTTACCATTTTTAGCACA-TGAAGTTCCCTAT-TCAAGAATCCATAC-CATTAG
1 TATGATTTCC-TTATCA-TTTTAGCACACT-AAGTGCCCTATATGGA-AATCCATACAC-TCAG
* * * * * *** *
5488074 TACGATCTCTTTACCATTTTTAGCACA-TGAAGTGCCCTATATGAAAATCCATATTGTTAG
1 TATGATTTCCTTATCA-TTTTAGCACACT-AAGTGCCCTATATGGAAATCCATACACTCAG
* * * * ** * * *
5488134 TATGATTTCCTTATCCTTGTAGCACCCTTAGTGCTTTTTCTGGAAATCCATACACTCAA
1 TATGATTTCCTTATCATTTTAGCACACTAAGTGCCCTATATGGAAATCCATACACTCAG
* * * * * *
5488193 TATGA-TTCTCTTACCATTTTAGCACA-TATAATGCCCTATCTGGAAATCCATATAGTCAA
1 TATGATTTC-CTTATCATTTTAGCACACTA-AGTGCCCTATATGGAAATCCATACACTCAG
* *
5488252 TATGATTTCCTTATCATTTTAGCACACTCAGTACTCC-ATATGGAAATCCATACACTCAG
1 TATGATTTCCTTATCATTTTAGCACACTAAGTGC-CCTATATGGAAATCCATACACTCAG
* * *
5488311 TATGATTTCCTTATCATTTTAGCACA-TATTGTGCTCC-ATATGGAAATCCATACACGCAA
1 TATGATTTCCTTATCATTTTAGCACACTA-AGTGC-CCTATATGGAAATCCATACACTCAG
*
5488370 TATGATTTCCTTATCATTTTAGCACA-TATAGTGCTCC-ATATGGAAATCCATACACTCAA
1 TATGATTTCCTTATCATTTTAGCACACTA-AGTGC-CCTATATGGAAATCCATACACTCAG
* * *
5488429 TATGATTTCCTTATCATTTTAGCACACTCAGTGCTCC-ATATGGAAATTCATACATTCAG
1 TATGATTTCCTTATCATTTTAGCACACTAAGTGC-CCTATATGGAAATCCATACACTCAG
5488488 TATGATTTCCTTATCATTTTAGCACA
1 TATGATTTCCTTATCATTTTAGCACA
5488514 TATAGTGTCA
Statistics
Matches: 426, Mismatches: 60, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
58 9 0.02
59 309 0.73
60 103 0.24
61 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (59 bp):
TATGATTTCCTTATCATTTTAGCACACTAAGTGCCCTATATGGAAATCCATACACTCAG
Found at i:5488052 original size:60 final size:60
Alignment explanation
Indices: 5487971--5488145 Score: 237
Period size: 60 Copynumber: 2.9 Consensus size: 60
5487961 TTCCTTCTCA
*
5487971 TTTTAGCACACGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGATTCCTTTACCAT
1 TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGATTCCTTTACCAT
* * *
5488031 TTTTAGCACATGAAGTTCCCTATTCAAGAATCCATACCATTAGTACGA-TCTCTTTACCAT
1 TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGATTC-CTTTACCAT
* ***
5488091 TTTTAGCACATGAAGTGCCCTATAT-GAAAATCCATATTGTTAGTATGATTTCCTT
1 TTTTAGCACATGAAGTGCCCTAT-TCGAGAATCCATACCATTAGTATGA-TTCCTT
5488146 ATCCTTGTAG
Statistics
Matches: 100, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
59 2 0.02
60 92 0.92
61 4 0.04
62 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (60 bp):
TTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATTAGTATGATTCCTTTACCAT
Found at i:5488324 original size:177 final size:178
Alignment explanation
Indices: 5488132--5488520 Score: 572
Period size: 177 Copynumber: 2.2 Consensus size: 178
5488122 CCATATTGTT
* * * *** * *
5488132 AGTATGATTTCCTTATCCTTGTAGCACCCT-TAGTGCTTTTTCTGGAAATCCATACACTCAATAT
1 AGTATGATTTCCTTATCATTTTAGCACCATATAGTGCTCCATATGGAAATCCATACACGCAATAT
* * *
5488196 GA-TTCTCTTACCATTTTAGCACATATAATGC-CCTATCTGGAAATCCATATAGTCAATATGATT
66 GATTTC-CTTACCATTTTAGCACATATAATGCTCC-ATATGGAAATCCATACACTCAATATGATT
5488259 TCCTTATCATTTTAGCACACTCAGTACTCCATATGGAAATCCATACACTC
129 TCCTTATCATTTTAGCACACTCAGTACTCCATATGGAAATCCATACACTC
*
5488309 AGTATGATTTCCTTATCATTTTAGCA-CATATTGTGCTCCATATGGAAATCCATACACGCAATAT
1 AGTATGATTTCCTTATCATTTTAGCACCATATAGTGCTCCATATGGAAATCCATACACGCAATAT
* *
5488373 GATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAATCCATACACTCAATATGATTTC
66 GATTTCCTTACCATTTTAGCACATATAATGCTCCATATGGAAATCCATACACTCAATATGATTTC
* * *
5488438 CTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATTCATACATTC
131 CTTATCATTTTAGCACACTCAGTACTCCATATGGAAATCCATACACTC
5488486 AGTATGATTTCCTTATCATTTTAGCA-CATATAGTG
1 AGTATGATTTCCTTATCATTTTAGCACCATATAGTG
5488521 TCATTTGGTA
Statistics
Matches: 191, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
176 2 0.01
177 184 0.96
178 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (178 bp):
AGTATGATTTCCTTATCATTTTAGCACCATATAGTGCTCCATATGGAAATCCATACACGCAATAT
GATTTCCTTACCATTTTAGCACATATAATGCTCCATATGGAAATCCATACACTCAATATGATTTC
CTTATCATTTTAGCACACTCAGTACTCCATATGGAAATCCATACACTC
Found at i:5493649 original size:22 final size:23
Alignment explanation
Indices: 5493621--5493663 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
5493611 TACTATATGT
5493621 ATGAACAATAT-CGTGAACAAAG
1 ATGAACAATATCCGTGAACAAAG
* *
5493643 ATGAACAGTGTCCGTGAACAA
1 ATGAACAATATCCGTGAACAA
5493664 TGTACCGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (23 bp):
ATGAACAATATCCGTGAACAAAG
Found at i:5494286 original size:44 final size:44
Alignment explanation
Indices: 5494164--5494428 Score: 449
Period size: 44 Copynumber: 6.0 Consensus size: 44
5494154 CCATTTAATC
* *
5494164 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATTAAATC
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTA-TAATTT
* * * *
5494209 CCTAAGCTCATAAACTTATTTTACCAATATACTTATTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
*
5494253 CATAATCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5494297 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
*
5494341 CATAAGTTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5494385 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
1 CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
5494429 GCATCAGTGA
Statistics
Matches: 206, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
44 172 0.83
45 34 0.17
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.42
Consensus pattern (44 bp):
CATAAGCTCGTAAGCTTATTTTACCAATATACTTACTATAATTT
Found at i:5494662 original size:60 final size:60
Alignment explanation
Indices: 5494565--5494723 Score: 223
Period size: 60 Copynumber: 2.7 Consensus size: 60
5494555 ATATACTTAA
* ** *
5494565 TATGATTTCCTT-CTCA-TTTTAGCACACAAAGTACCCTATTCAAGAATCCATACCATTAG
1 TATGATTTCTTTAC-CATTTTTAGCACATGAAGTGCCCTATTCAAGAATCCATACCATTAG
* *
5494624 TATGATTTCTTTACCATTTTTAGCACATGAAGTGCCCTATTCGAGAATCCATATCATTAG
1 TATGATTTCTTTACCATTTTTAGCACATGAAGTGCCCTATTCAAGAATCCATACCATTAG
**
5494684 TATGATCCCTTTACCATTTTTAGCACATGAAGTGCCCTAT
1 TATGATTTCTTTACCATTTTTAGCACATGAAGTGCCCTAT
5494724 ATGAAAATAT
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
59 13 0.14
60 77 0.86
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (60 bp):
TATGATTTCTTTACCATTTTTAGCACATGAAGTGCCCTATTCAAGAATCCATACCATTAG
Found at i:5494967 original size:177 final size:177
Alignment explanation
Indices: 5494784--5495130 Score: 581
Period size: 177 Copynumber: 2.0 Consensus size: 177
5494774 GTGCTTTTTC
* *
5494784 TGGAAATCCATACACTTAGTATGATTCCCTTACCATTTTAGCACATATAATGC-CCTATTTGGAA
1 TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACATATAATGCTCC-ATATGGAA
*
5494848 ATCCA-ACTATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCA
65 ATCCATAC-ACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCA
5494912 TACAATCAGTATGATTTCCTTATCATTTTAGCACATATAGTGCTCAATA
129 TACAATCAGTATGATTTCCTTATCATTTTAGCACATATAGTGCTCAATA
* * *
5494961 TGGAAATCCATACACTCAGTATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAA
1 TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACATATAATGCTCCATATGGAAA
* *
5495026 TCCATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATTCATA
66 TCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATA
*
5495091 CATTCAGTATGATTTCCTTATCATTTTAGCACATATAGTG
131 CAATCAGTATGATTTCCTTATCATTTTAGCACATATAGTG
5495131 TCATTTGGTA
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
177 155 0.97
178 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.36
Consensus pattern (177 bp):
TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACATATAATGCTCCATATGGAAA
TCCATACACTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATA
CAATCAGTATGATTTCCTTATCATTTTAGCACATATAGTGCTCAATA
Found at i:5495152 original size:59 final size:59
Alignment explanation
Indices: 5494565--5495130 Score: 520
Period size: 59 Copynumber: 9.6 Consensus size: 59
5494555 ATATACTTAA
* * * * **
5494565 TATGATTTCCTTCTCATTTTAGCACACAAAGTAC-CC-TATTCAAGAATCCATACCATT-AG
1 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATA-TGGA-AATCCATA-CATTCAG
* * *
5494624 TATGATTTCTTTACCATTTTTAGCACATGA-AGTGC-CC-TATTCGAGAATCCATATCATT-AG
1 TATGATTTCCTTATCA-TTTTAGCACAT-ATAGTGCTCCATA-TGGA-AATCCATA-CATTCAG
* * * * *
5494684 TATGA-TCCCTTTACCATTTTTAGCACATGA-AGTGC-CCTATATGAAAAT--ATATATTGTTAG
1 TATGATTTCC-TTATCA-TTTTAGCACAT-ATAGTGCTCC-ATATGGAAATCCATACA-T-TCAG
* * * * *** *
5494744 TACGATTTCCTTATCCTTGTAGCACCCT-TAGTGCTTTTTCTGGAAATCCATACACTT-AG
1 TATGATTTCCTTATCATTTTAGCA-CATATAGTGCTCCATATGGAAATCCATACA-TTCAG
* * * * *
5494803 TATGATTCCCTTACCATTTTAGCACATATAATGC-CCTATTTGGAAATCCA-ACTATTCAA
1 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCC-ATATGGAAATCCATAC-ATTCAG
* *
5494862 TATGATTTCCTTATCATTTTAGCACACT-CAGTGCTCCATATGGAAATCCATACAATCAG
1 TATGATTTCCTTATCATTTTAGCACA-TATAGTGCTCCATATGGAAATCCATACATTCAG
* *
5494921 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCAATATGGAAATCCATACACTCAG
1 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAATCCATACATTCAG
*
5494980 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAATCCATACACTCAG
1 TATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAATCCATACATTCAG
* *
5495039 TATGATTTCCTTATCATTTTAGCACACT-CAGTGCTCCATATGGAAATTCATACATTCAG
1 TATGATTTCCTTATCATTTTAGCACA-TATAGTGCTCCATATGGAAATCCATACATTCAG
5495098 TATGATTTCCTTATCATTTTAGCACATATAGTG
1 TATGATTTCCTTATCATTTTAGCACATATAGTG
5495131 TCATTTGGTA
Statistics
Matches: 431, Mismatches: 52, Indels: 48
0.81 0.10 0.09
Matches are distributed among these distances:
57 1 0.00
58 12 0.03
59 314 0.73
60 91 0.21
61 11 0.03
62 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.37
Consensus pattern (59 bp):
TATGATTTCCTTATCATTTTAGCACATATAGTGCTCCATATGGAAATCCATACATTCAG
Found at i:5497089 original size:28 final size:28
Alignment explanation
Indices: 5497049--5497109 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
5497039 TAATTTTTAG
*
5497049 TTTTTATATAA-TTAAAAATATTTATATA
1 TTTTTATATAATTTAAAAATATATAT-TA
*
5497077 TTTTTA-ATAAATTTAATAATATATATTA
1 TTTTTATAT-AATTTAAAAATATATATTA
5497105 TTTTT
1 TTTTT
5497110 TGGGTGAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 2 0.07
28 15 0.52
29 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTTTATATAATTTAAAAATATATATTA
Found at i:5515830 original size:30 final size:32
Alignment explanation
Indices: 5515770--5515836 Score: 102
Period size: 30 Copynumber: 2.2 Consensus size: 32
5515760 AATCAATTCT
5515770 TTTATAATAATACTTTGATATTAAATAATTTA
1 TTTATAATAATACTTTGATATTAAATAATTTA
* *
5515802 TTTATAATAATA-TTTTA-ATTAGATAATTTA
1 TTTATAATAATACTTTGATATTAAATAATTTA
5515832 TTTAT
1 TTTAT
5515837 TATCAAACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 17 0.52
31 4 0.12
32 12 0.36
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (32 bp):
TTTATAATAATACTTTGATATTAAATAATTTA
Found at i:5515838 original size:16 final size:15
Alignment explanation
Indices: 5515788--5515838 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
5515778 AATACTTTGA
5515788 TATTAAATAATTTATT
1 TATT-AATAATTTATT
5515804 TA-TAATAATATT-TT
1 TATTAATAAT-TTATT
*
5515818 AATTAGATAATTTATT
1 TATTA-ATAATTTATT
5515834 TATTA
1 TATTA
5515839 TCAAACTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
14 9 0.31
15 7 0.24
16 13 0.45
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TATTAATAATTTATT
Found at i:5531811 original size:2 final size:2
Alignment explanation
Indices: 5531804--5531863 Score: 72
Period size: 2 Copynumber: 31.5 Consensus size: 2
5531794 CGATTTTAAT
* *
5531804 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TT TT TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
5531844 TA AA TA T- TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
5531864 TTACTTAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
1 3 0.06
2 48 0.94
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:5537333 original size:24 final size:24
Alignment explanation
Indices: 5537306--5537357 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
5537296 CGTTCATTTA
* *
5537306 CGTTCGTGAACGTTCGGTTATGTT
1 CGTTCATGAACGTTCGATTATGTT
* **
5537330 CGTTTATGTTCGTTCGATTATGTT
1 CGTTCATGAACGTTCGATTATGTT
5537354 CGTT
1 CGTT
5537358 TATATTCATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.15, G:0.25, T:0.48
Consensus pattern (24 bp):
CGTTCATGAACGTTCGATTATGTT
Found at i:5537342 original size:10 final size:10
Alignment explanation
Indices: 5537317--5537373 Score: 51
Period size: 10 Copynumber: 5.3 Consensus size: 10
5537307 GTTCGTGAAC
*
5537317 GTTCGGTTAT
1 GTTCGTTTAT
5537327 GTTCGTTTAT
1 GTTCGTTTAT
5537337 GTTCGTTCGATTAT
1 GTTCG-T---TTAT
5537351 GTTCGTTTAT
1 GTTCGTTTAT
* *
5537361 ATTCATTTAT
1 GTTCGTTTAT
5537371 GTT
1 GTT
5537374 TAACCCAATC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 28 0.72
11 1 0.03
13 1 0.03
14 9 0.23
ACGTcount: A:0.14, C:0.11, G:0.19, T:0.56
Consensus pattern (10 bp):
GTTCGTTTAT
Found at i:5537344 original size:14 final size:14
Alignment explanation
Indices: 5537327--5537357 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
5537317 GTTCGGTTAT
*
5537327 GTTCGTTTATGTTC
1 GTTCGATTATGTTC
5537341 GTTCGATTATGTTC
1 GTTCGATTATGTTC
5537355 GTT
1 GTT
5537358 TATATTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.13, G:0.23, T:0.55
Consensus pattern (14 bp):
GTTCGATTATGTTC
Found at i:5538116 original size:10 final size:10
Alignment explanation
Indices: 5538101--5538175 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
5538091 GGGTCTCCAA
5538101 CGTTTATGTT
1 CGTTTATGTT
5538111 CGTTTATGTT
1 CGTTTATGTT
5538121 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
5538132 ATGTTCGTGTT
1 -CGTTTATGTT
5538143 CGTTTATGTT
1 CGTTTATGTT
5538153 CG----TGTT
1 CGTTTATGTT
5538159 CGTTTATGTT
1 CGTTTATGTT
5538169 CGTTTAT
1 CGTTTAT
5538176 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:5538132 original size:16 final size:16
Alignment explanation
Indices: 5538107--5538171 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
5538097 CCAACGTTTA
5538107 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
5538123 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
5538139 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
5538155 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
5538171 T
1 T
5538172 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:5538262 original size:16 final size:16
Alignment explanation
Indices: 5538241--5538273 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
5538231 AAAAAAATTT
5538241 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
5538257 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
5538273 T
1 T
5538274 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:5540724 original size:18 final size:19
Alignment explanation
Indices: 5540701--5540737 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
5540691 CCAGCAATCA
5540701 TATTCCC-TGGTAATCTTT
1 TATTCCCATGGTAATCTTT
5540719 TATTCCCATTGGTAATCTT
1 TATTCCCA-TGGTAATCTT
5540738 ACATTCCGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.19, C:0.22, G:0.11, T:0.49
Consensus pattern (19 bp):
TATTCCCATGGTAATCTTT
Found at i:5543046 original size:19 final size:20
Alignment explanation
Indices: 5543009--5543052 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
5542999 GTACTAAAAA
* *
5543009 TAATAATATTTTAAATA-TT
1 TAATAATAATATAAATATTT
*
5543028 TAATAATAATATAATTATTT
1 TAATAATAATATAAATATTT
5543048 TAATA
1 TAATA
5543053 TCATTTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATAATAATATAAATATTT
Found at i:5543090 original size:23 final size:24
Alignment explanation
Indices: 5543064--5543123 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
5543054 CATTTTTATA
*
5543064 AAAATGTAATGATTAAAATA-TTT
1 AAAATGTAATGAATAAAATATTTT
* * *
5543087 AAAATATAATTAATAATATATTTT
1 AAAATGTAATGAATAAAATATTTT
*
5543111 AATAATGTTATGA
1 AA-AATGTAATGA
5543124 GTTTGAATAG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
23 16 0.57
24 5 0.18
25 7 0.25
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.42
Consensus pattern (24 bp):
AAAATGTAATGAATAAAATATTTT
Found at i:5553893 original size:25 final size:25
Alignment explanation
Indices: 5553862--5553909 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
5553852 AAAAGAAACG
5553862 AACTTAT-AAATTTTAAAGAAATAAT
1 AACTTATAAAATTTTAAA-AAATAAT
5553887 AACTTATAAAATTTTAAAAAATA
1 AACTTATAAAATTTTAAAAAATA
5553910 TAAATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (25 bp):
AACTTATAAAATTTTAAAAAATAAT
Found at i:5553929 original size:24 final size:24
Alignment explanation
Indices: 5553902--5553948 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
5553892 ATAAAATTTT
*
5553902 AAAAAATATAAATATAAATATAAC
1 AAAAAATATAAAAATAAATATAAC
*
5553926 AAAAAATATAAAAATATATATAA
1 AAAAAATATAAAAATAAATATAA
5553949 AATTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAAAATATAAAAATAAATATAAC
Found at i:5557956 original size:21 final size:21
Alignment explanation
Indices: 5557857--5557998 Score: 139
Period size: 21 Copynumber: 6.8 Consensus size: 21
5557847 CGTTGCGATT
*
5557857 TTGGACTATCGCAACACGAAC
1 TTGGACTATCGCAACGCGAAC
* * *
5557878 TTCGACTATTGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
*
5557897 TTGGAATAAATCGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
*
5557920 TTCGACTATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
*
5557941 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
* *
5557960 TTGGAATAAATCACAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
5557983 TTGGACTATCGCAACG
1 TTGGACTATCGCAACG
5557999 AATTTGGAAA
Statistics
Matches: 97, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
19 19 0.20
21 59 0.61
23 19 0.20
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.22
Consensus pattern (21 bp):
TTGGACTATCGCAACGCGAAC
Found at i:5557959 original size:63 final size:63
Alignment explanation
Indices: 5557860--5557998 Score: 233
Period size: 63 Copynumber: 2.2 Consensus size: 63
5557850 TGCGATTTTG
* * *
5557860 GACTATCGCAACACGAACTTCGACTATTGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
1 GACTATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTC
* *
5557923 GACTATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTG
1 GACTATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTC
5557986 GACTATCGCAACG
1 GACTATCGCAACG
5557999 AATTTGGAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (63 bp):
GACTATCGCAACGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCACAACGCGAACTTC
Found at i:5558044 original size:21 final size:21
Alignment explanation
Indices: 5558020--5558060 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
5558010 TCGCATTGTA
5558020 ATAGTCGAAGATCGCGTTGCG
1 ATAGTCGAAGATCGCGTTGCG
* *
5558041 ATAGTCGATGTTCGCGTTGC
1 ATAGTCGAAGATCGCGTTGC
5558061 AAATATGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.29
Consensus pattern (21 bp):
ATAGTCGAAGATCGCGTTGCG
Found at i:5563701 original size:19 final size:19
Alignment explanation
Indices: 5563674--5563716 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
5563664 ACTGATCATT
*
5563674 TTCAATATCCCAAAGTATC
1 TTCATTATCCCAAAGTATC
5563693 TTCATTATCCCAAAGTATC
1 TTCATTATCCCAAAGTATC
5563712 TTCAT
1 TTCAT
5563717 CATCAAGGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (19 bp):
TTCATTATCCCAAAGTATC
Found at i:5569162 original size:31 final size:31
Alignment explanation
Indices: 5569111--5569169 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
5569101 ACTTAAAAGC
* *
5569111 GTTTTGCAATACTGAGATTTAAATAATTTTA
1 GTTTTACAATACTGAAATTTAAATAATTTTA
*
5569142 GTTTTACAATGCTGAAATTTAAATAATT
1 GTTTTACAATACTGAAATTTAAATAATT
5569170 CATACAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (31 bp):
GTTTTACAATACTGAAATTTAAATAATTTTA
Found at i:5569221 original size:22 final size:22
Alignment explanation
Indices: 5569193--5569279 Score: 84
Period size: 22 Copynumber: 3.8 Consensus size: 22
5569183 TAATAATTTA
5569193 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
* *
5569215 TTTAAAATAAATCAATTCATACAAC
1 TTTAAAATAAATCAATCCAT---AT
** * *
5569240 TACAATAATAAATTAATTCATAT
1 TTTAA-AATAAATCAATCCATAT
5569263 TTTAAAATAAATCAATC
1 TTTAAAATAAATCAATC
5569280 TATACAAATA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
22 29 0.57
23 4 0.08
25 4 0.08
26 14 0.27
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5569302 original size:32 final size:32
Alignment explanation
Indices: 5569263--5569822 Score: 380
Period size: 32 Copynumber: 19.4 Consensus size: 32
5569253 TAATTCATAT
* *
5569263 TTTAAAATAAATCAATCTATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569295 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569327 TTTAAAATAAATC-A---AT-CT-AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569349 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569381 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569403 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569435 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569457 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
5569489 TTTAAAATAAATCAATCGATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
5569519 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569537 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569569 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569601 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
5569623 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* * * * *
5569655 GTTAAAATATATCAATCGATATTTTAAAATAAATCAA
1 TTTAAAATAAATCAATCCATA--CT--AATAAAT-TA
* ** **
5569692 TCTATACAACTACAAT-AATAAAT-C-AATTCA-TA
1 T-T-TA-AAATA-AATCAATCCATACTAATAAATTA
*
5569724 TTTTAAAATAACTCAATCCATACTAATAAATTA
1 -TTTAAAATAAATCAATCCATACTAATAAATTA
5569757 TTTAAAATAAATCAATCCATAC----------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569779 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
5569811 TTTAAAATAAAT
1 TTTAAAATAAAT
5569823 TATTTTAAAA
Statistics
Matches: 421, Mismatches: 27, Indels: 160
0.69 0.04 0.26
Matches are distributed among these distances:
20 1 0.00
22 97 0.23
23 8 0.02
24 6 0.01
25 1 0.00
26 27 0.06
27 4 0.01
28 14 0.03
29 2 0.00
30 14 0.03
31 13 0.03
32 204 0.48
33 3 0.01
34 5 0.01
36 7 0.02
37 1 0.00
38 1 0.00
39 2 0.00
40 9 0.02
41 2 0.00
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.35
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:5569353 original size:54 final size:54
Alignment explanation
Indices: 5569295--5569822 Score: 698
Period size: 54 Copynumber: 9.8 Consensus size: 54
5569285 AAATAAATTA
*
5569295 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCTATAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
5569349 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
5569403 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
* *
5569457 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCGATACAAC
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCAT---AT
** ** * ** * ** **
5569514 TACAATAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATACTAATAAAT-T
1 TTTAA-AATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C-AATCCATAT
5569568 ATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
1 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
* * * *
5569623 TTTAAAATAAATCAATCTATACTAATAAATTAGTTAAAATATATCAATCGATAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
* * *
5569677 TTTAAAATAAATCAATCTATAC-AACTACA--A--T--AATAAATCAATTCATAT
1 TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATAT
* *
5569725 TTTAAAATAACTCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
5569779 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
5569823 TATTTTAAAA
Statistics
Matches: 414, Mismatches: 42, Indels: 36
0.84 0.09 0.07
Matches are distributed among these distances:
48 37 0.09
49 2 0.00
50 2 0.00
52 2 0.00
53 2 0.00
54 312 0.75
55 13 0.03
56 10 0.02
57 13 0.03
58 21 0.05
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.35
Consensus pattern (54 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAT
Found at i:5569358 original size:86 final size:84
Alignment explanation
Indices: 5569215--5569698 Score: 299
Period size: 86 Copynumber: 5.9 Consensus size: 84
5569205 CAATCCATAT
* * *
5569215 TTTAAAATAAATCAATTCATAC-AACTACA--AT--AATAAATTAAT-TCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAA-TAAATTATAAAATAAATCAATCT-ATATTTTAAAATAAA
*
5569274 TCAATCTATACAAATAAATTA
64 TCAATCTATACTAATAAATTA
5569295 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTA--TAAAATAAATCAATCTATATTTTAAAATAAA
*
5569360 TCAATCCATACTAATAAATTA
64 TCAATCTATACTAATAAATTA
** * *
5569381 TTTAAAATAAATCAATCCATA-TTTTAAA--AT-AAATCAATCCATACTAATAAATTATTTAAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATAAAATAAATCAAT-CT-AT--A-T-TTTAAAA
5569442 TAAATCAATC----C--AT--A-T-
60 TAAATCAATCTATACTAATAAATTA
* *** *
5569457 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCGATACAACTACAAT-A
1 TTTAAAATAAATCAATCCATACTAATAAATTA--TAAAATAAATCAATCTATA-TTTTAAAATAA
* * *
5569521 ATAAATCAAT-C-CAT--A-T-
63 ATCAATCTATACTAATAAATTA
* * * *
5569537 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-CTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA--TAAAATAAATCAATCTATATTTTA-AAATAA
* * ** * **
5569601 TTTAAAATA-AATCAATCCA-TA
63 ATCAATCTATACT-AATAAATTA
* * *
5569622 TTTTAAAATAAATCAATCTATACTAATAAATTAGTTAAAATATATCAATCGATATTTTAAAATAA
1 -TTTAAAATAAATCAATCCATACTAATAAATTA--TAAAATAAATCAATCTATATTTTAAAATAA
5569687 ATCAATCTATAC
63 ATCAATCTATAC
5569699 AACTACAATA
Statistics
Matches: 325, Mismatches: 44, Indels: 63
0.75 0.10 0.15
Matches are distributed among these distances:
76 28 0.09
77 11 0.03
78 3 0.01
79 5 0.02
80 99 0.30
81 7 0.02
82 16 0.05
83 1 0.00
84 4 0.01
85 6 0.02
86 141 0.43
87 4 0.01
ACGTcount: A:0.52, C:0.12, G:0.01, T:0.35
Consensus pattern (84 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATAAAATAAATCAATCTATATTTTAAAATAAATC
AATCTATACTAATAAATTA
Found at i:5569378 original size:22 final size:22
Alignment explanation
Indices: 5569329--5569377 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5569319 ATAAATTATT
* **
5569329 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCCATATAA
5569351 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5569374 TAAA
1 TAAA
5569378 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5569407 original size:22 final size:22
Alignment explanation
Indices: 5569381--5569423 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5569371 TAATAAATTA
5569381 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5569403 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5569424 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5569432 original size:22 final size:22
Alignment explanation
Indices: 5569383--5569431 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5569373 ATAAATTATT
**
5569383 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5569405 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5569428 TAAA
1 TAAA
5569432 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5569461 original size:22 final size:22
Alignment explanation
Indices: 5569435--5569477 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
5569425 TAATAAATTA
5569435 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
5569457 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
5569478 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:5569486 original size:22 final size:22
Alignment explanation
Indices: 5569437--5569485 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
5569427 ATAAATTATT
**
5569437 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
5569459 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5569482 TAAA
1 TAAA
5569486 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5569531 original size:188 final size:185
Alignment explanation
Indices: 5569183--5569822 Score: 726
Period size: 188 Copynumber: 3.4 Consensus size: 185
5569173 ACAACTACAA
* * *
5569183 TAATAATTTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACAACTACA-A--
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAA-TAAATATT
* * *
5569245 T--AATAAATTAATTCATATTTTAAAATAAATCAATCTATACAAATAAATTATTTAAAATAAATC
65 TAAAATAAATCAATCCATATTTTAAAATAAATCAATC-ATACTAATAAATTATTTAAAATAAATC
*
5569308 AATCCATACTAA-TAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
129 AATCCATAC-AACTACA--A--T--AATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
5569371 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC-AATAAA-TAT
5569436 TTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
64 TTAAAATAAATCAATCCATATTTTAAAATAAATCAAT-CATACTAATAAATTATTTAAAATAAAT
* *
5569501 CAATCGATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
128 CAATCCATACAACTACAATAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
** * ** * ** **
5569559 TAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-CAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATACAATAAATA-
* ** * ** * **
5569623 TTTAAAATAAATCAATCTATACTAATAAATTAGTTAAAAT-ATA-TCAATCGA-TATTTTAAAAT
63 TTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCATACT-AATAAATTA-TTTAAAAT
* *
5569685 AAATCAATCTATACAACTACAATAATAAATCAAT-TCATATTTTAAAATAACTCAATCCATAC
124 AAATCAATCCATACAACTACAATAATAAATCAATCT-ATATTTTAAAATAAATCAATCCATAC
*
5569747 TAATAAATTATTTAAAATAAATCAATCCATACTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC-AATAAA-TAT
5569812 TTAAAATAAAT
64 TTAAAATAAAT
5569823 TATTTTAAAA
Statistics
Matches: 390, Mismatches: 42, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
186 5 0.01
187 13 0.03
188 268 0.69
189 21 0.05
190 10 0.03
192 2 0.01
193 2 0.01
194 68 0.17
195 1 0.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.35
Consensus pattern (185 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAATAAATATTT
AAAATAAATCAATCCATATTTTAAAATAAATCAATCATACTAATAAATTATTTAAAATAAATCAA
TCCATACAACTACAATAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
Found at i:5569566 original size:22 final size:22
Alignment explanation
Indices: 5569491--5569565 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
5569481 ATAAATTATT
* *
5569491 TAAAATAAATCAATCGATACAA
1 TAAAATAAATCAATCCATATAA
**
5569513 CTACAATAATAAATCAATCCATATTT
1 -T--AA-AATAAATCAATCCATATAA
5569539 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
5569562 TAAA
1 TAAA
5569566 TTATTTAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 16 0.38
23 8 0.19
25 3 0.07
26 15 0.36
ACGTcount: A:0.55, C:0.16, G:0.01, T:0.28
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5569652 original size:22 final size:22
Alignment explanation
Indices: 5569603--5569651 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
5569593 ATAAATTATT
**
5569603 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
5569625 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
5569648 TAAA
1 TAAA
5569652 TTAGTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:5569785 original size:22 final size:22
Alignment explanation
Indices: 5569757--5569801 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
5569747 TAATAAATTA
5569757 TTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATCCATAC
5569779 TTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATCCATAC
5569801 T
1 T
5569802 AATAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAC
Found at i:5569808 original size:22 final size:22
Alignment explanation
Indices: 5569759--5569807 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
5569749 ATAAATTATT
*
5569759 TAAAATAAATCAATCCATACTT
1 TAAAATAAATCAATCCATACTA
5569781 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACT-A
5569804 TAAA
1 TAAA
5569808 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.55, C:0.16, G:0.00, T:0.29
Consensus pattern (22 bp):
TAAAATAAATCAATCCATACTA
Found at i:5569831 original size:15 final size:15
Alignment explanation
Indices: 5569802--5569948 Score: 154
Period size: 15 Copynumber: 9.5 Consensus size: 15
5569792 AATCCATACT
5569802 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
5569816 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
5569831 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
5569853 AATAATTTATTTTAA
1 AATAAATTATTTTAA
*
5569868 AATAAATTATTTTAT
1 AATAAATTATTTTAA
* *
5569883 AATAAATTGTTTCAA
1 AATAAATTATTTTAA
* *
5569898 AATAAATTGTTTTAT
1 AATAAATTATTTTAA
5569913 AATAAATTATTTTAA
1 AATAAATTATTTTAA
5569928 AATAAATTATTTT-A
1 AATAAATTATTTTAA
5569942 AATAAAT
1 AATAAAT
5569949 AACCTTATTA
Statistics
Matches: 113, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
14 17 0.15
15 79 0.70
17 1 0.01
18 2 0.02
19 3 0.03
20 1 0.01
22 10 0.09
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:5569861 original size:47 final size:50
Alignment explanation
Indices: 5569560--5569934 Score: 200
Period size: 54 Copynumber: 7.4 Consensus size: 50
5569550 AATCCATACT
5569560 AATAAATTA-TTTAAAATAAATCAATCCATACTAATAAAT--TA-TTTAA
1 AATAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
* * *
5569606 AATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAAT--TAGTTAAA
1 AAT--A--AAT---TATTTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
* ** *
5569661 ATATATCAATCGATATTTTAAAATAAATCAATCTATAC-AACTACAATAATA-AAT-C
1 A-ATA--AAT---TATTTTAAAATAAATCAATCCATACTAA-TA-AATAATATTTTAA
** *
5569716 AATTCA-TATTTTAAAATAACTCAATCCATACTAATAAAT--TA-TTTAA
1 AATAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
5569762 AATAAATCAATCCATACTTTAAAATAAATCAATCCATACTAATAAAT--TA-TTTAA
1 AATAAAT---T--AT--TTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
**
5569816 AATAAATTATTTTAAAATAAATCAATCCATA-TTTTATAATAATTTATTTTAA
1 AATAAATTATTTTAAAATAAATCAATCCATACTAATA-AATAA--TATTTTAA
* *** * * *
5569868 AATAAATTATTTTATAATAAATTGTTTCA-A--AATAAAT--TGTTTTAT
1 AATAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
5569913 AATAAATTATTTTAAAATAAAT
1 AATAAATTATTTTAAAATAAAT
5569935 TATTTTAAAT
Statistics
Matches: 270, Mismatches: 29, Indels: 61
0.75 0.08 0.17
Matches are distributed among these distances:
45 30 0.11
46 10 0.04
47 27 0.10
48 26 0.10
49 7 0.03
50 6 0.02
51 4 0.01
52 32 0.12
53 4 0.01
54 111 0.41
55 9 0.03
56 2 0.01
57 2 0.01
ACGTcount: A:0.51, C:0.10, G:0.01, T:0.39
Consensus pattern (50 bp):
AATAAATTATTTTAAAATAAATCAATCCATACTAATAAATAATATTTTAA
Found at i:5579878 original size:5 final size:5
Alignment explanation
Indices: 5579868--5579892 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
5579858 CCTAAAAAGT
5579868 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
5579893 GATTGGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:5581351 original size:16 final size:14
Alignment explanation
Indices: 5581319--5581360 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 14
5581309 TATTTTAAAT
5581319 AATATATTAT-ATA
1 AATATATTATAATA
5581332 AATATATTATAATA
1 AATATATTATAATA
*
5581346 CGAATATATAATAAT
1 --AATATATTATAAT
5581361 CTCATTCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 10 0.40
14 3 0.12
16 12 0.48
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (14 bp):
AATATATTATAATA
Found at i:5583128 original size:3 final size:3
Alignment explanation
Indices: 5583120--5583187 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
5583110 ATGGGCCATT
5583120 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
5583168 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
5583188 GAGGGTGGGG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:5594017 original size:2 final size:2
Alignment explanation
Indices: 5594010--5594042 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5594000 TGATGAATAA
5594010 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5594043 AGAGTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5596205 original size:20 final size:20
Alignment explanation
Indices: 5596180--5596229 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
5596170 GACCAACAAA
5596180 TTCGCAACGCAAACTCCAAT
1 TTCGCAACGCAAACTCCAAT
* ***
5596200 TTCGCAACCCAGTTTCCAAT
1 TTCGCAACGCAAACTCCAAT
5596220 TTCGCAACGC
1 TTCGCAACGC
5596230 GAATATGTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.24
Consensus pattern (20 bp):
TTCGCAACGCAAACTCCAAT
Found at i:5596265 original size:21 final size:21
Alignment explanation
Indices: 5596241--5596287 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
5596231 AATATGTAAA
5596241 TCGCATTGCAATTTTCCAAAT
1 TCGCATTGCAATTTTCCAAAT
* *
5596262 TCGCATTGCGATTTTCCAATT
1 TCGCATTGCAATTTTCCAAAT
5596283 TCGCA
1 TCGCA
5596288 ACGCGAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (21 bp):
TCGCATTGCAATTTTCCAAAT
Found at i:5596293 original size:21 final size:21
Alignment explanation
Indices: 5596194--5596293 Score: 69
Period size: 21 Copynumber: 4.9 Consensus size: 21
5596184 CAACGCAAAC
* *
5596194 TCCAATTTCGCAAC-CCAGTT
1 TCCAATTTCGCAACGCGATTT
* *
5596214 TCCAATTTCGCAACGCGAATA
1 TCCAATTTCGCAACGCGATTT
** * ** *
5596235 TGTAA-ATCGCATTGCAATTT
1 TCCAATTTCGCAACGCGATTT
* **
5596255 TCCAAATTCGCATTGCGATTT
1 TCCAATTTCGCAACGCGATTT
5596276 TCCAATTTCGCAACGCGA
1 TCCAATTTCGCAACGCGA
5596294 ATCTGTAAAT
Statistics
Matches: 60, Mismatches: 18, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 26 0.43
21 34 0.57
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (21 bp):
TCCAATTTCGCAACGCGATTT
Found at i:5596326 original size:20 final size:20
Alignment explanation
Indices: 5596303--5596432 Score: 115
Period size: 20 Copynumber: 6.5 Consensus size: 20
5596293 AATCTGTAAA
*
5596303 TCGCAATACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
**
5596323 TCGCAAC-GTGATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
*
5596343 TCGCAACGC-GATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
*
5596363 TCGCAACACAAAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
* *
5596383 TCGCAACGCAGAATTTCAAAT
1 TCGCAACACAGAA-GTCAAAT
* *
5596404 TCGC-A-ACTGAATTTCAAAT
1 TCGCAACACAGAA-GTCAAAT
5596423 TCGCAACACA
1 TCGCAACACA
5596433 AATTTAGTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
19 18 0.20
20 61 0.66
21 13 0.14
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.22
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:5596347 original size:40 final size:38
Alignment explanation
Indices: 5596311--5596429 Score: 132
Period size: 40 Copynumber: 3.0 Consensus size: 38
5596301 AATCGCAATA
5596311 CAGAAGTCAAATTCGCAACGTGATAGTCAAATTCGCAACG
1 CAGAAGTCAAATTCGCAAC-TGA-AGTCAAATTCGCAACG
**
5596351 C-GATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACG
1 CAGA-AGTCAAATTCGC-A-ACTGAAGTCAAATTCGCAACG
* *
5596391 CAGAATTTCAAATTCGCAACTGAATTTCAAATTCGCAAC
1 CAGAA-GTCAAATTCGCAACTGAA-GTCAAATTCGCAAC
5596430 ACAAATTTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
39 6 0.09
40 45 0.67
41 14 0.21
42 2 0.03
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (38 bp):
CAGAAGTCAAATTCGCAACTGAAGTCAAATTCGCAACG
Found at i:5596417 original size:19 final size:19
Alignment explanation
Indices: 5596357--5596430 Score: 85
Period size: 19 Copynumber: 3.7 Consensus size: 19
5596347 AACGCGATAG
* **
5596357 TCAAATTCGCAACACAAAAG
1 TCAAATTCGCAACA-GAATT
5596377 TCAAATTCGCAACGCAGAATT
1 TCAAATTCGCAA--CAGAATT
*
5596398 TCAAATTCGCAACTGAATT
1 TCAAATTCGCAACAGAATT
5596417 TCAAATTCGCAACA
1 TCAAATTCGCAACA
5596431 CAAATTTAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 19 0.40
20 12 0.26
21 14 0.30
22 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.23
Consensus pattern (19 bp):
TCAAATTCGCAACAGAATT
Found at i:5596421 original size:60 final size:60
Alignment explanation
Indices: 5596282--5596434 Score: 163
Period size: 60 Copynumber: 2.5 Consensus size: 60
5596272 ATTTTCCAAT
* * * *
5596282 TTCGCAACGCGAATCTGT-AAA-TCGCAATACAGAAGTCAAATTCGCAACGTGATAGTCAAA
1 TTCGCAACGC-AAT-AGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGAGATAGTCAAA
* *
5596342 TTCGCAACGCGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCAGA-ATTTCAAA
1 TTCGCAACGCAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACG-AGATA-GTCAAA
*
5596403 TTCGCAACTG-AAT-TTCAAATTCGCAACACAAA
1 TTCGCAAC-GCAATAGTCAAATTCGCAACACAAA
5596435 TTTAGTTTCA
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
58 2 0.03
59 5 0.06
60 55 0.69
61 17 0.21
62 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.22
Consensus pattern (60 bp):
TTCGCAACGCAATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGAGATAGTCAAA
Found at i:5596606 original size:14 final size:16
Alignment explanation
Indices: 5596587--5596623 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
5596577 TCCCCATCTC
5596587 TAATTTT-TTT-TACA
1 TAATTTTATTTCTACA
*
5596601 TAATTTTATTTCTATA
1 TAATTTTATTTCTACA
5596617 TAATTTT
1 TAATTTT
5596624 CAATGATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 3 0.15
16 10 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
TAATTTTATTTCTACA
Found at i:5597374 original size:24 final size:24
Alignment explanation
Indices: 5597323--5597376 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
5597313 GTATTCAAAA
*
5597323 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
5597347 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
5597371 TTTGAT
1 TTTGAT
5597377 GATGTGATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:5600143 original size:25 final size:25
Alignment explanation
Indices: 5600115--5600172 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
5600105 AAATTAATTA
*
5600115 AACATTGTTGTGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
5600140 AACATTGTTATGGGTACATTATTTG
1 AACATTGTTATGGGTACATTATTTG
5600165 AACATTGT
1 AACATTGT
5600173 ATGTATAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (25 bp):
AACATTGTTATGGGTACATTATTTG
Found at i:5600438 original size:39 final size:39
Alignment explanation
Indices: 5600381--5600467 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
5600371 TCCGATGCTC
5600381 ATCAAAATCCAAAGCTCATATGGTGACAAGCAAAAAGAA
1 ATCAAAATCCAAAGCTCATATGGTGACAAGCAAAAAGAA
* * *
5600420 ATCAAAATCCAAATCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGACAAGCAAAAAGAA
5600459 ATCAAAATC
1 ATCAAAATC
5600468 TACAACTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.17
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGGTGACAAGCAAAAAGAA
Found at i:5602393 original size:21 final size:21
Alignment explanation
Indices: 5602317--5602409 Score: 64
Period size: 21 Copynumber: 4.4 Consensus size: 21
5602307 GCGGGCGAGA
* *
5602317 CCTCTTGAAAGATGACG-GGGG
1 CCTCTTGAACGAT-AAGAGGGG
* ** *
5602338 CCTCTTGAACGGTGGGATGGG
1 CCTCTTGAACGATAAGAGGGG
* *
5602359 CTTCTTCG-ATGATAAGAGGGG
1 CCTCTT-GAACGATAAGAGGGG
* *
5602380 CCTCTTGAACGATATGAGGCG
1 CCTCTTGAACGATAAGAGGGG
5602401 CCTCTTGAA
1 CCTCTTGAA
5602410 TGATGATAGG
Statistics
Matches: 54, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
20 2 0.04
21 51 0.94
22 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (21 bp):
CCTCTTGAACGATAAGAGGGG
Found at i:5605311 original size:22 final size:22
Alignment explanation
Indices: 5605283--5605330 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
5605273 GATGGAGATA
5605283 GACGAATTTCGTCGGAAATGGG
1 GACGAATTTCGTCGGAAATGGG
*
5605305 GACGAATTTCGTCGGAGATGGG
1 GACGAATTTCGTCGGAAATGGG
5605327 GACG
1 GACG
5605331 GATGTCACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.40, T:0.21
Consensus pattern (22 bp):
GACGAATTTCGTCGGAAATGGG
Found at i:5605486 original size:20 final size:20
Alignment explanation
Indices: 5605461--5605506 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
5605451 ACGTAAAAAC
* *
5605461 ATTTGACTTTCGCTTTGCGA
1 ATTTGACTATCGCGTTGCGA
5605481 ATTTGACTATCGCGTTGCGA
1 ATTTGACTATCGCGTTGCGA
5605501 ATTTGA
1 ATTTGA
5605507 AAAATCGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (20 bp):
ATTTGACTATCGCGTTGCGA
Found at i:5605872 original size:20 final size:20
Alignment explanation
Indices: 5605847--5605884 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
5605837 TTTGGTTCAC
5605847 GGAATGCAAGATTACCAGTG
1 GGAATGCAAGATTACCAGTG
*
5605867 GGAATGTAAGATTACCAG
1 GGAATGCAAGATTACCAG
5605885 AGAATAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (20 bp):
GGAATGCAAGATTACCAGTG
Found at i:5613281 original size:2 final size:2
Alignment explanation
Indices: 5613270--5613303 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
5613260 ATAACTATTT
5613270 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5613304 TATCAATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5613984 original size:21 final size:21
Alignment explanation
Indices: 5613960--5614020 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
5613950 AACTTTGAAA
5613960 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
5613981 AAAT-G-TTT---A-TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
5613995 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
5614016 AAATG
1 AAATG
5614021 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:5614051 original size:37 final size:36
Alignment explanation
Indices: 5613952--5614060 Score: 175
Period size: 35 Copynumber: 3.0 Consensus size: 36
5613942 TGGCAACCAA
5613952 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
5613989 ATTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
5614024 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
5614061 GTTGAAATAT
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
35 34 0.51
36 7 0.10
37 26 0.39
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:5618663 original size:37 final size:36
Alignment explanation
Indices: 5618564--5618672 Score: 193
Period size: 35 Copynumber: 3.0 Consensus size: 36
5618554 TGGCAACTAA
5618564 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
5618601 CTTTG-AAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
5618636 CTTTGAAAAATGGTTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
5618673 GTTGAAATAT
Statistics
Matches: 70, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
35 35 0.50
36 7 0.10
37 28 0.40
ACGTcount: A:0.30, C:0.06, G:0.19, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:5620153 original size:20 final size:20
Alignment explanation
Indices: 5620130--5620172 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
5620120 TCATGATGAG
5620130 TTAT-GGAATATAAAGATGGT
1 TTATAGGAATAT-AAGATGGT
* *
5620150 TTATATGAATATAAGTTGGT
1 TTATAGGAATATAAGATGGT
5620170 TTA
1 TTA
5620173 AGTAATGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.37, C:0.00, G:0.21, T:0.42
Consensus pattern (20 bp):
TTATAGGAATATAAGATGGT
Found at i:5620467 original size:20 final size:22
Alignment explanation
Indices: 5620423--5620479 Score: 73
Period size: 20 Copynumber: 2.6 Consensus size: 22
5620413 GCATGGATAG
5620423 TGCATCGATGCACATGTTAAGAA
1 TGCATCGATGCAC-TGTTAAGAA
*
5620446 TGCATCTATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
*
5620466 TGTATCGATGCACT
1 TGCATCGATGCACT
5620480 TCAAAGGGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.52
21 1 0.03
22 2 0.06
23 12 0.39
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:5623041 original size:20 final size:20
Alignment explanation
Indices: 5623013--5623050 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5623003 ATATATATAT
*
5623013 AATTTTTAATGAAATTAAAA
1 AATTGTTAATGAAATTAAAA
*
5623033 AATTGTTAATTAAATTAA
1 AATTGTTAATGAAATTAA
5623051 TATTTGATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
AATTGTTAATGAAATTAAAA
Found at i:5627099 original size:21 final size:18
Alignment explanation
Indices: 5627069--5627108 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 18
5627059 TAATCTTCAA
5627069 TTTAAATTAATCATCAATTT
1 TTTAAATTAATC-T-AATTT
5627089 TTTAATATTAATCTAATTT
1 TTTAA-ATTAATCTAATTT
5627108 T
1 T
5627109 ATCTTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 6 0.32
21 7 0.37
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTAAATTAATCTAATTT
Found at i:5630843 original size:70 final size:70
Alignment explanation
Indices: 5630730--5630862 Score: 221
Period size: 70 Copynumber: 1.9 Consensus size: 70
5630720 TAGAAGTCAG
* * *
5630730 TTGGGATGTTCTTCTATGTTTCTTAGCCATGTGGGATTGTTTTGTTCTCCTATTTTTACTCTTTA
1 TTGGGATGCTCATCTATGTTTCTTAGCCATGTGAGATTGTTTTGTTCTCCTATTTTTACTCTTTA
5630795 GACTT
66 GACTT
* *
5630800 TTGGGATGCTCATCTATGTTTCTTAGCCATGTGAGATTGTTTTGTTCTCTTATTTTTGCTCTT
1 TTGGGATGCTCATCTATGTTTCTTAGCCATGTGAGATTGTTTTGTTCTCCTATTTTTACTCTT
5630863 CTATGCTCTT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.13, C:0.16, G:0.19, T:0.53
Consensus pattern (70 bp):
TTGGGATGCTCATCTATGTTTCTTAGCCATGTGAGATTGTTTTGTTCTCCTATTTTTACTCTTTA
GACTT
Found at i:5638275 original size:16 final size:15
Alignment explanation
Indices: 5638250--5638290 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
5638240 ACTTATTATA
5638250 AAAT-AATATAAGAT
1 AAATAAATATAAGAT
*
5638264 AACATAAATATAATAT
1 AA-ATAAATATAAGAT
5638280 AAATAAA-ATAA
1 AAATAAATATAA
5638291 TATTGCATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 6 0.25
15 7 0.29
16 11 0.46
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (15 bp):
AAATAAATATAAGAT
Found at i:5639515 original size:154 final size:154
Alignment explanation
Indices: 5639336--5639642 Score: 438
Period size: 154 Copynumber: 2.0 Consensus size: 154
5639326 ACAAGATAAT
* * *
5639336 TCTATTCACAAATAACTCTCAACCATTTGACATAGAACGCTCGTACCTCCGGCATTGCTAGTGCT
1 TCTATTAAAAAATAACTCTCAACCATTTGACAGAGAACGCTCGTACCTCCGGCATTGCTAGTGCT
* * *
5639401 CGAACCCGGAACCTAAAAAAATAACAACAA-TTCTTTTACCATCAAAATCACT-AGGGTTCGTGC
66 CAAACCCGGAACCTAAAAAAATAACAACAATTTC-TTTACCATCAAAATCACTGA-GATTCGTAC
5639464 AACTTTATTGTAGTTTAATGATCATA
129 AACTTTATTGTAGTTTAATGATCATA
* * * **
5639490 TCTATTAAAAAATAACTCTCTACCATTTGACAGAGAATGCTTGTACCTCTTGCATTGCTAGTGCT
1 TCTATTAAAAAATAACTCTCAACCATTTGACAGAGAACGCTCGTACCTCCGGCATTGCTAGTGCT
* * * * *
5639555 CAAACTCGGAACCTCAATAAATACCAACAATTTCTTTACCATCGAAATCACTGAGATTCGTACAA
66 CAAACCCGGAACCTAAAAAAATAACAACAATTTCTTTACCATCAAAATCACTGAGATTCGTACAA
5639620 CTTTATTGTAGTTTAATGATCAT
131 CTTTATTGTAGTTTAATGATCAT
5639643 TTATAATTTT
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
154 131 0.97
155 4 0.03
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (154 bp):
TCTATTAAAAAATAACTCTCAACCATTTGACAGAGAACGCTCGTACCTCCGGCATTGCTAGTGCT
CAAACCCGGAACCTAAAAAAATAACAACAATTTCTTTACCATCAAAATCACTGAGATTCGTACAA
CTTTATTGTAGTTTAATGATCATA
Found at i:5640939 original size:16 final size:17
Alignment explanation
Indices: 5640903--5640939 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
5640893 TTCATAAGAT
5640903 TTTAATTGATATTTAAA
1 TTTAATTGATATTTAAA
5640920 TTTAATT-AT-TTTATAA
1 TTTAATTGATATTTA-AA
5640936 TTTA
1 TTTA
5640940 GATATAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.21
16 8 0.42
17 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTAATTGATATTTAAA
Found at i:5641951 original size:2 final size:2
Alignment explanation
Indices: 5641944--5641970 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5641934 GTGTATGTAC
5641944 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
5641971 GTCAGAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5646897 original size:31 final size:31
Alignment explanation
Indices: 5646861--5646920 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
5646851 AACTTAAAAG
* *
5646861 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
5646892 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
5646921 CATACAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:5647505 original size:17 final size:18
Alignment explanation
Indices: 5647472--5647514 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
5647462 TTAGAAAATT
5647472 AATATTAATATTAAAATCA
1 AATA-TAATATTAAAATCA
*
5647491 AATATAATA-TAAAATTA
1 AATATAATATTAAAATCA
5647508 AATATAA
1 AATATAA
5647515 AACCTCTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 14 0.61
18 5 0.22
19 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AATATAATATTAAAATCA
Found at i:5647805 original size:16 final size:15
Alignment explanation
Indices: 5647752--5647805 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
5647742 TAGTATATAT
*
5647752 ATATATTTTTTATTA
1 ATATATATTTTATTA
*
5647767 ATTTATATTTCTATT-
1 ATATATATTT-TATTA
5647782 ATATTATATTTTATTGA
1 ATA-TATATTTTATT-A
5647799 ATATATA
1 ATATATA
5647806 CAAGTTTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 14 0.44
16 15 0.47
17 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (15 bp):
ATATATATTTTATTA
Found at i:5648285 original size:24 final size:24
Alignment explanation
Indices: 5648248--5648363 Score: 106
Period size: 24 Copynumber: 4.8 Consensus size: 24
5648238 AAAATATATT
* * *
5648248 TTCATTTATATTCGTTTATGTTTA
1 TTCATTTGTGTTCGTTTATGTTCA
* *
5648272 TTTATTTGTGTTCGTTTATGTTCG
1 TTCATTTGTGTTCGTTTATGTTCA
**
5648296 TTCATTTGTGTTCGTTTATGTTTG
1 TTCATTTGTGTTCGTTTATGTTCA
* ** ** *
5648320 TTTACATCCGTTCGCTTTATATTCA
1 TTCATTTGTGTTCG-TTTATGTTCA
5648345 TTCATTTGTGTTCGTTTAT
1 TTCATTTGTGTTCGTTTAT
5648364 CATTTAAATG
Statistics
Matches: 71, Mismatches: 20, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
24 55 0.77
25 16 0.23
ACGTcount: A:0.14, C:0.12, G:0.15, T:0.59
Consensus pattern (24 bp):
TTCATTTGTGTTCGTTTATGTTCA
Found at i:5654508 original size:4 final size:4
Alignment explanation
Indices: 5654499--5654531 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
5654489 TGCACTTCTG
*
5654499 TACA TACA TACA TACA TA-A TAGA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TA
5654532 GAAATATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:5655329 original size:8 final size:8
Alignment explanation
Indices: 5655318--5655346 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
5655308 ATTAAAGTAT
5655318 TTTTAAAA
1 TTTTAAAA
5655326 TTTTAAAA
1 TTTTAAAA
5655334 TTTTAAAA
1 TTTTAAAA
5655342 TTTTA
1 TTTTA
5655347 TATAAATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTTTAAAA
Found at i:5657059 original size:17 final size:17
Alignment explanation
Indices: 5657037--5657072 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
5657027 TTATTAGTTT
5657037 GTTAGTTTAGGGTTAGG
1 GTTAGTTTAGGGTTAGG
5657054 GTTAGTTTAGGGTTAGG
1 GTTAGTTTAGGGTTAGG
5657071 GT
1 GT
5657073 AAAAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.42, T:0.42
Consensus pattern (17 bp):
GTTAGTTTAGGGTTAGG
Found at i:5657097 original size:4 final size:4
Alignment explanation
Indices: 5657088--5657121 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
5657078 ATTTACTTAA
*
5657088 TTAG TTAG TTTG TTAG TTAG TTAG -TAG TTAG TTA
1 TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTAG TTA
5657122 TATATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (4 bp):
TTAG
Found at i:5657271 original size:30 final size:30
Alignment explanation
Indices: 5657228--5657319 Score: 141
Period size: 30 Copynumber: 3.1 Consensus size: 30
5657218 TTTTTGGCAG
* *
5657228 TGAA-TTATAATTAAAAAATATTTTATTAGT
1 TGAAGTTAT-ATTAAAGAATAGTTTATTAGT
*
5657258 TTAAGTTATATTAAAGAATAGTTTATTAGT
1 TGAAGTTATATTAAAGAATAGTTTATTAGT
5657288 TGAAGTTATATTAAAGAATAGTTTATTAGT
1 TGAAGTTATATTAAAGAATAGTTTATTAGT
5657318 TG
1 TG
5657320 TTTAAAGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
30 53 0.93
31 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (30 bp):
TGAAGTTATATTAAAGAATAGTTTATTAGT
Found at i:5657314 original size:15 final size:16
Alignment explanation
Indices: 5657261--5657315 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
5657251 TATTAGTTTA
5657261 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
**
5657277 AGTT-TATTAGTTG-A-
1 AGTTATATTA-AAGAAT
5657291 AGTTATATTAAAGAAT
1 AGTTATATTAAAGAAT
5657307 AGTT-TATTA
1 AGTTATATTA
5657316 GTTGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
14 5 0.16
15 17 0.55
16 9 0.29
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
AGTTATATTAAAGAAT
Found at i:5657391 original size:16 final size:15
Alignment explanation
Indices: 5657372--5657405 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
5657362 GTTTGTTACT
*
5657372 TTATAAGTTTATTATA
1 TTATAAG-TTAATATA
5657388 TTATAAGTTAATATA
1 TTATAAGTTAATATA
5657403 TTA
1 TTA
5657406 AATTTTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (15 bp):
TTATAAGTTAATATA
Found at i:5658640 original size:23 final size:24
Alignment explanation
Indices: 5658600--5658645 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
5658590 TTTAATTATT
*
5658600 ATTTAAATTAACTATATT-TTTTG
1 ATTTAAATAAACTATATTGTTTTG
* *
5658623 ATTTAAATAAATTTTATTGTTTT
1 ATTTAAATAAACTATATTGTTTT
5658646 TGTAATTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
ATTTAAATAAACTATATTGTTTTG
Found at i:5659561 original size:14 final size:14
Alignment explanation
Indices: 5659542--5659589 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
5659532 TATTTATAAT
5659542 AAATCATTACTATC
1 AAATCATTACTATC
5659556 AAATCATTAC--T-
1 AAATCATTACTATC
5659567 AAATCATTACTATC
1 AAATCATTACTATC
5659581 AAATCATTA
1 AAATCATTA
5659590 AATATTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 10 0.32
12 1 0.03
13 1 0.03
14 19 0.61
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATCATTACTATC
Found at i:5659575 original size:25 final size:25
Alignment explanation
Indices: 5659541--5659589 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
5659531 ATATTTATAA
5659541 TAAATCATTACTATCAAATCATTAC
1 TAAATCATTACTATCAAATCATTAC
5659566 TAAATCATTACTATCAAATCATTA
1 TAAATCATTACTATCAAATCATTA
5659590 AATATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (25 bp):
TAAATCATTACTATCAAATCATTAC
Found at i:5659595 original size:60 final size:60
Alignment explanation
Indices: 5659531--5659806 Score: 448
Period size: 60 Copynumber: 4.6 Consensus size: 60
5659521 CAAATTCGAC
* * * *
5659531 ATATTTATAATAA-ATCATTACTATCAAATCATTACTAAATCATTACTATCAAATCATTAA
1 ATATTAATAATAATTTCATTATTA-CTAATCATTACTAAATCATTACTATCAAATCATTAA
* *
5659591 ATATTAATAACAATTTCATTATTATTAATCATTACTAAATCATTACTATCAAATCATTAA
1 ATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
*
5659651 ATATTAATAACAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
1 ATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
*
5659711 ATATTAATAATAATTTCATTATTACTAATTATTACT-AATCATTACTATCAAATCATTAA
1 ATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
*
5659770 ATAATAATAATAATTTCATTATTACTAATCATTACTA
1 ATATTAATAATAATTTCATTATTACTAATCATTACTA
5659807 TCAAATCATT
Statistics
Matches: 203, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
59 57 0.28
60 138 0.68
61 8 0.04
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.41
Consensus pattern (60 bp):
ATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATCAAATCATTAA
Found at i:5659627 original size:49 final size:56
Alignment explanation
Indices: 5659618--5660537 Score: 918
Period size: 60 Copynumber: 16.0 Consensus size: 56
5659608 ATTATTATTA
5659618 ATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
*
5659677 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* * *
5659737 AATTATTACT-AATCATTACTATCAAATCATTAAATAATAATAATAATTTC-ATTA-T
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCTATTACT
* * *
5659792 -T-A--CT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTC-ATTA-T
1 ATCATTATAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCTATTACT
* * * *
5659841 -T-A--CT-AATCATTACTATCAAATCATTAAAAATTAATAATAATTTAATTATTACT
1 ATCATTATAAATCATTACTATCAAATCATTAAATATTAATAACAATTT--CTATTACT
5659894 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
5659954 AATCATTACTAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* *
5660014 AATCATTATTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* * *
5660074 AATCATTACTAAATCATTACTATCAAATCATTAAAAATTAATAATAATTTTATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAA-TTT-CTATTACT
* *
5660134 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAAATAATAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATT-AATAACAATTTC--TATTACT
** *
5660195 AATCATTACTCTATCATTACTATAAAATCATTAAATATTAATAACAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* *
5660255 AATCACTACTAAATCATTACTATCAAATCATTAAATATTAATAAAAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* *
5660315 AATCATTACTAAATTATTACTATCAAATCATTAAATATTAATAATAATTTCATTATTACT
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
*
5660375 AATCATTACT-AATCATTACTATCAAATCATTAGAA-ATTAATAATAATTTC-ATTA-T
1 -ATCATTA-TAAATCATTACTATCAAATCATTA-AATATTAATAACAATTTCTATTACT
* * * *
5660430 -T-A--CT-AATCATTACTATCAAATCTTTAAAAATTAATAATAATTTCATTATTACT
1 ATCATTATAAATCATTACTATCAAATCATTAAATATTAATAACAATTTC--TATTACT
* *
5660483 AATCATTACTAAATCATTAATATCAAATCATTAAATATTAATAATAATTTC-ATTA
1 -ATCATTA-TAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCTATTA
5660538 AATATTAATA
Statistics
Matches: 790, Mismatches: 39, Indels: 65
0.88 0.04 0.07
Matches are distributed among these distances:
48 2 0.00
49 124 0.16
52 10 0.01
53 4 0.01
55 4 0.01
56 10 0.01
57 4 0.01
59 77 0.10
60 502 0.64
61 53 0.07
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (56 bp):
ATCATTATAAATCATTACTATCAAATCATTAAATATTAATAACAATTTCTATTACT
Found at i:5659695 original size:120 final size:120
Alignment explanation
Indices: 5659576--5660537 Score: 1438
Period size: 120 Copynumber: 8.3 Consensus size: 120
5659566 TAAATCATTA
* *
5659576 CTATCAAATCATTAAATATTAATAACAATTTCATTATTATTAATCATTACTAAATCATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
*
5659641 AAATCATTAAATATTAATAACAATTTCATTATTACTAATCATTACTAAATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
*
5659696 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATTATTACT-AATCATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
*
5659760 AAATCATTAAATAATAATAATAATTTC------A-T--T-ATTACT-AATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
*
5659804 CTATCAAATCATTAAAAATTAATAATAATTTCA-------T--T-ATTACT-AATCATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
* *
5659858 AAATCATTAAAAATTAATAATAATTTAATTATTACTAATCATTACTAAATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
*
5659913 CTATCAAATCATTAAATATTAATAACAATTTCATTATTACTAATCATTACTAAATCATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
* *
5659978 AAATCATTAAATATTAATAACAATTTCATTATTACTAATCATTATTAAATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
*
5660033 CTATCAAATCATTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
* *
5660098 AAATCATTAAAAATTAATAATAATTTTATTATTACTAATCATTACTAAATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
* **
5660153 ATATCAAATCATTAAATATTAAATAATAATTTCATTATTACTAATCATTACTCTATCATTACTAT
1 CTATCAAATCATTAAATATT-AATAATAATTTCATTATTACTAATCATTACTAAATCATTACTAT
* * *
5660218 AAAATCATTAAATATTAATAACAATTTCATTATTACTAATCACTACTAAATCATTA
65 CAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
* *
5660274 CTATCAAATCATTAAATATTAATAAAAATTTCATTATTACTAATCATTACTAAATTATTACTATC
1 CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
5660339 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACT-AATCATTA
66 AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
5660393 CTATCAAATCATTAGAA-ATTAATAATAATTTCATTATTACTAATCATTACT--ATCA--A--AT
1 CTATCAAATCATTA-AATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTAT
*
5660451 C---T--TTAAAAATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
65 CAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
*
5660502 ATATCAAATCATTAAATATTAATAATAATTTCATTA
1 CTATCAAATCATTAAATATTAATAATAATTTCATTA
5660538 AATATTAATA
Statistics
Matches: 774, Mismatches: 42, Indels: 63
0.88 0.05 0.07
Matches are distributed among these distances:
98 43 0.06
99 1 0.00
101 1 0.00
104 1 0.00
105 1 0.00
107 1 0.00
108 87 0.11
109 85 0.11
110 2 0.00
112 1 0.00
113 4 0.01
115 1 0.00
116 1 0.00
117 3 0.00
118 1 0.00
119 99 0.13
120 330 0.43
121 112 0.14
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (120 bp):
CTATCAAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTACTATC
AAATCATTAAATATTAATAATAATTTCATTATTACTAATCATTACTAAATCATTA
Found at i:5659716 original size:21 final size:20
Alignment explanation
Indices: 5659541--5659716 Score: 78
Period size: 21 Copynumber: 8.4 Consensus size: 20
5659531 ATATTTATAA
5659541 TAAATCATTACTATCAAATCATT
1 TAAAT-ATTACTATC-AATCA-T
5659564 ACTAAATCATTACTATCAAATCAT
1 --TAAAT-ATTACTATC-AATCAT
* *
5659588 TAAATATTAATAACAATTTCAT
1 TAAATATTACTATCAA--TCAT
* * *
5659610 T-ATTATTA--ATC-ATTAC
1 TAAATATTACTATCAATCAT
5659626 TAAATCATTACTATCAAATCAT
1 TAAAT-ATTACTATC-AATCAT
* *
5659648 TAAATATTAATAACAAT--T
1 TAAATATTACTATCAATCAT
* * * *
5659666 TCATTATTACTAATC-ATTAC
1 TAAATATTACT-ATCAATCAT
5659686 TAAATCATTACTATCAAATCAT
1 TAAAT-ATTACTATC-AATCAT
5659708 TAAATATTA
1 TAAATATTA
5659717 ATAATAATTT
Statistics
Matches: 117, Mismatches: 20, Indels: 32
0.69 0.12 0.19
Matches are distributed among these distances:
16 3 0.03
17 2 0.02
18 16 0.14
19 4 0.03
20 14 0.12
21 30 0.26
22 26 0.22
24 1 0.01
25 21 0.18
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAATATTACTATCAATCAT
Found at i:5659912 original size:21 final size:22
Alignment explanation
Indices: 5659888--5660639 Score: 120
Period size: 21 Copynumber: 37.0 Consensus size: 22
5659878 TAATTTAATT
*
5659888 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
*
5659909 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* * *
5659930 ATTAATAA-CAA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
*
5659948 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
*
5659969 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* * *
5659990 ATTAATAA-CAA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
5660008 ATTACTAATC-ATTATTAAATC
1 ATTACTAATCAATTATTAAATC
* *
5660029 ATTACT-ATCAAATCATTAAA-A
1 ATTACTAATC-AATTATTAAATC
* * *
5660050 ATTAATAAT-AA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
*
5660068 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
* *
5660089 ATTACT-ATCAAATCATTAAA-A
1 ATTACTAATC-AATTATTAAATC
* *
5660110 ATTAATAAT-AATT-TT--ATT
1 ATTACTAATCAATTATTAAATC
*
5660128 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
* *
5660149 ATTAAT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* ** *
5660170 ATTA--AAT-AATAATTTCATT
1 ATTACTAATCAATTATTAAATC
* **
5660189 ATTACTAATC-ATTACTCTATC
1 ATTACTAATCAATTATTAAATC
* *
5660210 ATTACT-ATAAAATCATTAAAT-
1 ATTACTAAT-CAATTATTAAATC
* * *
5660231 ATTAATAA-CAA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
* *
5660249 ATTACTAATC-ACTACTAAATC
1 ATTACTAATCAATTATTAAATC
*
5660270 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* ** *
5660291 ATTAATAA--AA--ATTTCATT
1 ATTACTAATCAATTATTAAATC
* *
5660309 ATTACTAATC-ATTACTAAATT
1 ATTACTAATCAATTATTAAATC
*
5660330 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* * *
5660351 ATTAATAAT-AA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
*
5660369 ATTACTAATC-ATTACT-AATC
1 ATTACTAATCAATTATTAAATC
*
5660389 ATTACT-ATCAAATCATTAGAA--
1 ATTACTAATC-AATTATTA-AATC
* * *
5660410 ATTAATAAT-AA-T-TT-CATT
1 ATTACTAATCAATTATTAAATC
5660428 ATTACTAATC-ATTACTATCAAATC
1 ATTACTAATCAATTA-T-T-AAATC
* ** * ** *
5660452 TTTAAAAATTAATAATAATTTCATT
1 ATTACTAATCAAT--T-ATTAAATC
*
5660477 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
* *
5660498 ATTAAT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
*
5660519 ATTAATAAT-AATTTCATTAAAT-
1 ATTACTAATCAA-TT-ATTAAATC
* *
5660541 ATTAATAAT-AATT-TT--ATT
1 ATTACTAATCAATTATTAAATC
*
5660559 ATTACTAATC-ATTACTAAATC
1 ATTACTAATCAATTATTAAATC
*
5660580 ATTACT-ATCAAATCATTAAAT-
1 ATTACTAATC-AATTATTAAATC
* *
5660601 ATTAATAAT-AA-T-TTCAA-C
1 ATTACTAATCAATTATTAAATC
5660619 ATTACTAATC-ATTATTAAATC
1 ATTACTAATCAATTATTAAATC
5660640 TTATAAATAC
Statistics
Matches: 517, Mismatches: 116, Indels: 196
0.62 0.14 0.24
Matches are distributed among these distances:
16 1 0.00
17 17 0.03
18 113 0.22
19 26 0.05
20 68 0.13
21 154 0.30
22 112 0.22
23 2 0.00
24 10 0.02
25 10 0.02
26 1 0.00
27 2 0.00
28 1 0.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTACTAATCAATTATTAAATC
Done.