Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 28 of 41
Found at i:5888508 original size:23 final size:23
Alignment explanation
Indices: 5888481--5888553 Score: 137
Period size: 23 Copynumber: 3.2 Consensus size: 23
5888471 ATACTTTATA
5888481 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
5888504 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
5888527 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
5888550 ATAT
1 ATAT
5888554 TTTTACCTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5888597 original size:22 final size:22
Alignment explanation
Indices: 5888572--5888616 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
5888562 GATATATTGT
* *
5888572 AAAGTATCGATCCTTTTTATAA
1 AAAGGATCGATACTTTTTATAA
*
5888594 AAAGGATCGATACTTTTTTTAA
1 AAAGGATCGATACTTTTTATAA
5888616 A
1 A
5888617 GTTATGTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (22 bp):
AAAGGATCGATACTTTTTATAA
Found at i:5889007 original size:23 final size:23
Alignment explanation
Indices: 5888972--5889044 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
5888962 ATACTTTACA
*
5888972 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
5888995 ATATAAACGCTACCTATTATATT
1 ATATAAGCGCTACCTATTACATT
* *
5889018 ATATAAGTGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
5889041 ATAT
1 ATAT
5889045 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5889487 original size:21 final size:21
Alignment explanation
Indices: 5889457--5889529 Score: 56
Period size: 23 Copynumber: 3.3 Consensus size: 21
5889447 GATAGATACT
* * *
5889457 TTACAATATAAGCACTATCTA
1 TTACATTATAAACACTACCTA
*
5889478 TTACATTATATAAACGCTACCTA
1 TTACA-T-TATAAACACTACCTA
**
5889501 TTACATTATATAAGTGCTACCTA
1 TTACATTATA-AA-CACTACCTA
5889524 TTACAT
1 TTACAT
5889530 CATATTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 9 0.21
22 3 0.07
23 31 0.72
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (21 bp):
TTACATTATAAACACTACCTA
Found at i:5889501 original size:23 final size:23
Alignment explanation
Indices: 5889475--5889534 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
5889465 TAAGCACTAT
5889475 CTATTACATTATATAAACGCTAC
1 CTATTACATTATATAAACGCTAC
**
5889498 CTATTACATTATATAAGTGCTAC
1 CTATTACATTATATAAACGCTAC
*
5889521 CTATTACATCATAT
1 CTATTACATTATAT
5889535 TTTTACCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.38
Consensus pattern (23 bp):
CTATTACATTATATAAACGCTAC
Found at i:5889861 original size:489 final size:490
Alignment explanation
Indices: 5888076--5892913 Score: 8830
Period size: 490 Copynumber: 9.9 Consensus size: 490
5888066 TATATTATAA
*
5888076 TATATTGAAAGTGACCATACTTTTTTATAAAAA-GATCGATACTTTTTTTAAAGTTATGTAATTT
1 TATATTGAAAGTGTCCATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTT
5888140 ATGTTTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
65 ATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
*
5888203 TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGATTTTAAATTTAAC
130 TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAAC
*
5888268 AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAA
195 AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAA
* * * ** * * *
5888333 TATATACCGTAACATAAAATATAAATCATTAGATACATATAATTACTAAAATGATATCTTAAAAC
260 TATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
* * * *
5888398 TCACTCAAAAGATAACCTTAAATTAATGTTTTCTACAGTGAAATAAGTATTGACACTTCTATAAA
325 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
* * *
5888463 AAGGATAGATACTTTATAATATAAGCGCTACCTATTACATTATATAAGCGCTACCTATTACATTA
390 AAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTA
*
5888528 TATAAGCGCTACCTATTACATCATATTTTTACCTGA-
455 TATAAGTGCTACCTATTACATCATATTTTTACCT-AT
* * * *
5888564 TATATTGTAAAGTATCGATCCTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTT
1 TATATTG-AAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTT
* *
5888629 ATGTTTCAAATTTTTTTAATAGTGTTTCACGTTTTCCACCTACAATATTAATTTAATAATTTCAT
65 ATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
* * *
5888694 TTACACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAAAATTTAAATTTAAC
130 TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAAC
*
5888759 AATATTAACCAAAGATAATAATAAACATGTAATATATATGTTTATTGTTTTTAATTTAATAATAA
195 AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAA
* * *
5888824 TATATACCGTAACGTAAAAAATAAATCATTAGACACCTATAATTACTAAATTAATATATTAAAAC
260 TATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
* * * *
5888889 TCACTCAAATGATAACCTTAAATTAACGTTTTCTACAGTGAAAAAATTATGGACACTTTTATAAA
325 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
* *
5888954 AATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTATATTA
390 AAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTA
5889019 TATAAGTGCTACCTATTACATCATATTTTTACCTAT
455 TATAAGTGCTACCTATTACATCATATTTTTACCTAT
5889055 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5889120 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
*
5889185 TGTACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5889250 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
*
5889315 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5889380 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5889445 AGGATAGATACTTTACAATATAAGCACTATCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5889510 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
5889545 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
*
5889610 TGTTTCAA-TTTTTTTAATAATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
*
5889674 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5889739 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
5889804 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
** *
5889869 CACTCAAAAGATAACCTTAAATTAACATTTTCTACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
5889934 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5889999 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
*
5890034 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATATA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5890099 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
5890164 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
* *
5890229 ATATTAACCAAATATAATAATAAATATGTAATATATATATTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
* * *
5890294 ATATATCGTAAAGTAAAAAATAAATCATTAGACGTCTGTAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5890359 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5890424 ATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5890489 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
5890524 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATAC-TTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5890588 TGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
*
5890652 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5890717 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
*
5890782 ATATATCGTAACGTAAAAAATAAATCATTAGATGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
**
5890847 CACTCAAAAGATAACCTTAAATTAACATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
* *
5890912 AGGATAGATAATTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTATATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
*
5890977 ATAAGTGCTACATATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
*
5891012 TATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
*
5891077 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATG
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
** *
5891142 TATACAAAAAAATATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5891207 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
*
5891272 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5891337 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5891402 AGGATAGATACTTTACAATATAAGCACTATCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5891467 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
5891502 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
*
5891567 TGTTTCAATTTTTTTTAATAATGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
*
5891632 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5891697 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
5891762 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
**
5891827 CACTCAAAAGATAACCTTAAATTAACATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
5891892 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
*
5891957 ATAAGTGTTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
5891992 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5892057 TGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
5892121 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5892186 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
* *
5892251 ATATATCGTAACGTAAAAAATAAATCATTAGACGTCTGTAATTACTAAATTAATATCTTAAAACT
261 ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5892316 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
* *
5892381 ATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
**
5892446 ATAAACGCTACCTATTACATCATATTTTTACCTAT
456 ATAAGTGCTACCTATTACATCATATTTTTACCTAT
5892481 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5892546 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
* * *
5892611 TACATAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5892676 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
*
5892741 ATATAAT-GTAAAGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
261 ATAT-ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAAC
5892805 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
325 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
*
5892870 AAGGATAGATATTTTACAATATAAGCACTACCTATTACATTATA
390 AAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATA
5892914 ATTATTAGTT
Statistics
Matches: 4209, Mismatches: 131, Indels: 18
0.97 0.03 0.00
Matches are distributed among these distances:
488 463 0.11
489 1066 0.25
490 2284 0.54
491 396 0.09
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (490 bp):
TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
ATATATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
ATAAGTGCTACCTATTACATCATATTTTTACCTAT
Found at i:5889973 original size:979 final size:979
Alignment explanation
Indices: 5888076--5892913 Score: 8900
Period size: 979 Copynumber: 4.9 Consensus size: 979
5888066 TATATTATAA
*
5888076 TATATTGAAAGTGACCATACTTTTTTATAAAAA-GATCGATACTTTTTTTAAAGTTATGTAATTT
1 TATATTGAAAGTGTCCATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTT
5888140 ATGTTTCAA--TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
65 ATGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
*
5888203 TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGATTTTAAATTTAAC
130 TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAAC
*
5888268 AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATGATAA
195 AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAA
* * ** * * *
5888333 TATATA-CCGTAACATAAAATATAAATCATTAGATACATATAATTACTAAAATGATATCTTAAAA
260 TATATATCC-TAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
* * * *
5888397 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCTACAGTGAAATAAGTATTGACACTTCTATAA
324 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAA
* * *
5888462 AAAGGATAGATACTTTATAATATAAGCGCTACCTATTACATTATATAAGCGCTACCTATTACATT
389 AAAGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATT
* * * *
5888527 ATATAAGCGCTACCTATTACATCATATTTTTACCTGA-TATATTGTAAAGTATCGATCCTTTTTA
454 ATATAAGTGCTACCTATTACATCATATTTTTACCT-ATTATATTG-AAAGTGTCCATACTTTTTA
*
5888591 TAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAAATTTTTTTAATAGTGTTT
517 TAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTC-AATTTTTTTAATAGTGTTT
* *
5888656 CACGTTTTCCACCTACAATATTAATTTAATAATTTCATTTACACAAAAAATTATTTGATTGTTTT
581 CATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTT
* *
5888721 GATATTTTATAAAATATTATTTAAAATTTAAATTTAACAATATTAACCAAAGATAATAATAAACA
646 GATATTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATA
*
5888786 TGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATC
711 TGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATC
* * *
5888851 ATTAGACACCTATAATTACTAAATTAATATATTAAAACTCACTCAAATGATAACCTTAAATTAAC
776 ATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAAC
* * * *
5888916 GTTTTCTACAGTGAAAAAATTATGGACACTTTTATAAAAATGATAGATACTTTACAATATAAGCA
841 ATTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCA
*
5888981 CTACCTATTACATTATATAAACGCTACCTATTATATTATATAAGTGCTACCTATTACATCATATT
906 CTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATT
5889046 TTTACCTAT
971 TTTACCTAT
5889055 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5889120 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
*
5889185 TGTACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5889250 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
5889315 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5889380 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5889445 AGGATAGATACTTTACAATATAAGCACTATCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5889510 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
456 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
*
5889575 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAATGTTTCATGT
521 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGT
5889640 TTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATAT
586 TTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATAT
5889705 TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAA
651 TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAA
5889770 TATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
716 TATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
5889835 ACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTTT
781 ACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTTT
*
5889900 CTACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
846 CCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
5889965 TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTAC
911 TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTAC
5890030 CTAT
976 CTAT
*
5890034 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATATA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5890099 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
5890164 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
* *
5890229 ATATTAACCAAATATAATAATAAATATGTAATATATATATTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
* * * *
5890294 ATATATCGTAAAGTAAAAAATAAATCATTAGACGTCTGTAATTACTAAATTAATATCTTAAAACT
261 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5890359 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5890424 ATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5890489 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
456 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
5890554 AATGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGT
521 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGT
5890618 TTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATAT
586 TTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATAT
5890683 TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAA
651 TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAA
5890748 TATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
716 TATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
*
5890813 ATGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTTT
781 ACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTTT
*
5890878 CCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATAATTTACAATATAAGCACTACC
846 CCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
* *
5890943 TATTACATTATATAAACGCTACCTATTATATTATATAAGTGCTACATATTACATCATATTTTTAC
911 TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTAC
5891008 CTAT
976 CTAT
*
5891012 TATATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
*
5891077 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATG
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
** *
5891142 TATACAAAAAAATATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5891207 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
5891272 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
261 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5891337 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
*
5891402 AGGATAGATACTTTACAATATAAGCACTATCTATTACATTATATAAACGCTACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
5891467 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
456 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
*
5891532 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAATGTTTCATG
521 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATG
5891597 TTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATA
585 TTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATA
5891662 TTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTA
650 TTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTA
5891727 ATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTA
715 ATATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTA
5891792 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTT
780 GACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTT
5891857 TCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTAC
845 TCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTAC
*
5891922 CTATTACATTATATAAACGCTACCTATTACATTATATAAGTGTTACCTATTACATCATATTTTTA
910 CTATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTA
5891987 CCTAT
975 CCTAT
5891992 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
1 TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
5892057 TGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
66 TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
5892121 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
131 TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
5892186 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
196 ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
* * *
5892251 ATATATCGTAACGTAAAAAATAAATCATTAGACGTCTGTAATTACTAAATTAATATCTTAAAACT
261 ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
5892316 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
326 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
* *
5892381 ATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATACCTATTACATTAT
391 AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
**
5892446 ATAAACGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
456 ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
5892511 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTTAATAGTGTTTCATG
521 AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAA-TTTTTTTAATAGTGTTTCATG
* *
5892576 TTTTCCACCTACAATATTAATTTAATAATTTCATTTACATAAAAAATTATTTGATTGTTTTGATA
585 TTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATA
5892641 TTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTA
650 TTTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTA
*
5892706 ATATATATGTTTATTGTTTTTAATTTAATAATAATATATAAT-GTAAAGTAAAAAATAAATCATT
715 ATATATATGTTTATTGTTTTTAATTTAATAATAATATAT-ATCGTAACGTAAAAAATAAATCATT
**
5892770 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTT
779 AGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATT
*
5892835 TTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATATTTTACAATATAAGCACTA
844 TTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTA
5892900 CCTATTACATTATA
909 CCTATTACATTATA
5892914 ATTATTAGTT
Statistics
Matches: 3758, Mismatches: 93, Indels: 16
0.97 0.02 0.00
Matches are distributed among these distances:
978 970 0.26
979 1843 0.49
980 545 0.15
981 398 0.11
982 2 0.00
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (979 bp):
TATATTGAAAGTGTCCATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTA
TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATT
TGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACA
ATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAAT
ATATATCCTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACT
CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
AGGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTAT
ATAAGTGCTACCTATTACATCATATTTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
AATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGT
TTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATAT
TTTATAAAATATTATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAA
TATATATGTTTATTGTTTTTAATTTAATAATAATATATATCGTAACGTAAAAAATAAATCATTAG
ACGCCTATAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAACATTTT
CCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAAGCACTACC
TATTACATTATATAAACGCTACCTATTACATTATATAAGTGCTACCTATTACATCATATTTTTAC
CTAT
Found at i:5889986 original size:23 final size:23
Alignment explanation
Indices: 5889951--5890023 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
5889941 ATACTTTACA
*
5889951 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
5889974 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
5889997 ATATAAGTGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
5890020 ATAT
1 ATAT
5890024 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5890476 original size:23 final size:23
Alignment explanation
Indices: 5890441--5890513 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
5890431 ATACTTTACA
*
5890441 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
5890464 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
5890487 ATATAAGTGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
5890510 ATAT
1 ATAT
5890514 TTTTACCTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5890964 original size:23 final size:23
Alignment explanation
Indices: 5890929--5891001 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
5890919 ATAATTTACA
*
5890929 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
5890952 ATATAAACGCTACCTATTATATT
1 ATATAAGCGCTACCTATTACATT
* * *
5890975 ATATAAGTGCTACATATTACATC
1 ATATAAGCGCTACCTATTACATT
5890998 ATAT
1 ATAT
5891002 TTTTACCTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5891444 original size:21 final size:21
Alignment explanation
Indices: 5891414--5891486 Score: 56
Period size: 23 Copynumber: 3.3 Consensus size: 21
5891404 GATAGATACT
* * *
5891414 TTACAATATAAGCACTATCTA
1 TTACATTATAAACACTACCTA
*
5891435 TTACATTATATAAACGCTACCTA
1 TTACA-T-TATAAACACTACCTA
**
5891458 TTACATTATATAAGTGCTACCTA
1 TTACATTATA-AA-CACTACCTA
5891481 TTACAT
1 TTACAT
5891487 CATATTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 9 0.21
22 3 0.07
23 31 0.72
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (21 bp):
TTACATTATAAACACTACCTA
Found at i:5891458 original size:23 final size:23
Alignment explanation
Indices: 5891432--5891491 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
5891422 TAAGCACTAT
5891432 CTATTACATTATATAAACGCTAC
1 CTATTACATTATATAAACGCTAC
**
5891455 CTATTACATTATATAAGTGCTAC
1 CTATTACATTATATAAACGCTAC
*
5891478 CTATTACATCATAT
1 CTATTACATTATAT
5891492 TTTTACCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.38
Consensus pattern (23 bp):
CTATTACATTATATAAACGCTAC
Found at i:5891944 original size:23 final size:23
Alignment explanation
Indices: 5891909--5891981 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
5891899 ATACTTTACA
*
5891909 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
5891932 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* * *
5891955 ATATAAGTGTTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
5891978 ATAT
1 ATAT
5891982 TTTTACCTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.37
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:5892434 original size:23 final size:23
Alignment explanation
Indices: 5892408--5892470 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
5892398 ATATAAGCAC
5892408 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
*
5892431 TACCTATTACATTATATAAACGC
1 TACCTATTACATTATATAAACGA
*
5892454 TACCTATTACATCATAT
1 TACCTATTACATTATAT
5892471 TTTTACCTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.40, C:0.21, G:0.03, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:5895174 original size:200 final size:200
Alignment explanation
Indices: 5894584--5895703 Score: 1929
Period size: 200 Copynumber: 5.6 Consensus size: 200
5894574 CATTAAACAA
* * *
5894584 TGTCGATACA-TATTATATACCAATTCT-TCCATAAAACCGGTATACTTATACCGGTTAGATTGA
1 TGTCGATACATTATT-TAGACCTATTCTCT-CATAAAACCGGTATACTTGTACCGGTTAGATTGA
* *
5894647 AAAATTACCTAATACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
64 AAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
* *
5894712 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAGACT
129 GATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
5894777 ACAAAAG
194 ACAAAAG
* *
5894784 TGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG-AA
*
5894849 AAATTACCTATTATATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
65 AAATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGG
5894914 ATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTA
130 ATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTA
5894979 CAAAAG
195 CAAAAG
*
5894985 TATCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
* * *
5895050 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATCGGATCAACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
*
5895115 TCGACACTTTATTGTTGAACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
5895180 AAAAG
196 AAAAG
*
5895185 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
* *
5895250 AATTACCTATTACATTATACTTTTGGGTTTTGATGTTTATGGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
* *
5895315 TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
5895380 AAAAG
196 AAAAG
* *
5895385 TGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
*
5895450 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
*
5895515 TCGACACTTTATTGTTGCACTCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
*
5895580 AGAAG
196 AAAAG
* *
5895585 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGATTGACA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
* * *
5895650 AATTACCTATTACATTATACTTTTAGGTTTCGATGTTTATCGGATCGACACTTT
66 AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTT
5895704 ATTGTTGCAC
Statistics
Matches: 871, Mismatches: 46, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
200 674 0.77
201 197 0.23
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (200 bp):
TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
AATTACCTATTACATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATGGA
TCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
AAAAG
Found at i:5895452 original size:400 final size:400
Alignment explanation
Indices: 5894584--5895913 Score: 2094
Period size: 400 Copynumber: 3.4 Consensus size: 400
5894574 CATTAAACAA
* * * *
5894584 TGTCGATACA-TATTATATACCAATTCT-TCCATAAAACCGGTATACTTATACCGGTTAGATTGA
1 TGTCGATACATTATT-TAGACCTATTCTCT-CATAAAACCGGTATACTTGTACCAGTTAGATTGA
* * *
5894647 AAAATTACCTAATACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATATATG
64 AAAATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATG
*
5894712 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAGACT
129 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
*
5894777 ACAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACC-AGTTA
194 ACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGA-TTA
* *
5894841 GATTGAAAAAATTACCTATTATATTATACTTATGGGTTTCGATGTTTATGGGATCGACACTTTTT
258 GATTG-AAAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTT
5894906 ATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGAC
322 ATATATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGAC
5894971 ACAAACTACAAAAG
387 ACAAACTACAAAAG
* *
5894985 TATCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
* *
5895050 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATCGGATCAACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
* *
5895115 TCGACACTTTATTGTTGAACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
5895180 AAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGAT
196 AAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGAT
*
5895245 TGAAAAATTACCTATTACATTATACTTTTGGGTTTTGATGTTTATGGGATCGACACTTTTTATAT
261 TGAAAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATAT
* *
5895310 ATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTATGGACCAAAAATATCGACACAA
326 ATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAA
5895375 ACTACAAAAG
391 ACTACAAAAG
*
5895385 TGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
5895450 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
* *
5895515 TCGACACTTTATTGTTGCACTCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
131 TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
*
5895580 AGAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGAT
196 AAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGAT
* *
5895645 TGACAAATTACCTATTACATTATACTTTTAGGTTTCGATG-TT-T---AT-----C---------
261 TGAAAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATAT
5895691 --GGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACC-AAAA-AT------AA
326 ATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAA
*
5895746 ACTACAAAAT
391 ACTACAAAAG
*
5895756 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAATTAGATTGAAA
1 TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
* * * * * *
5895821 AATTGCCTATTACATTATACTTTTGAGTTTCGATGTTTATGAGATCGATACTTTTTATATATGGA
66 AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
5895886 TCGACACTTTATGGTTGCACCCTGTTTG
131 TCGACACTTTATGGTTGCACCCTGTTTG
5895914 TCATATTGTA
Statistics
Matches: 884, Mismatches: 42, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
371 159 0.18
377 2 0.00
378 4 0.00
379 45 0.05
390 1 0.00
395 2 0.00
398 1 0.00
399 2 0.00
400 422 0.48
401 240 0.27
402 6 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (400 bp):
TGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAGTTAGATTGAAA
AATTACCTATTACATTATACTTATGGGTTTCGATATTTATGGGATCGACACTTTTTATATATGGA
TCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACTAC
AAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGATTAGAT
TGAAAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTATGGGATCGACACTTTTTATAT
ATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAA
ACTACAAAAG
Found at i:5895805 original size:171 final size:173
Alignment explanation
Indices: 5895509--5895874 Score: 569
Period size: 171 Copynumber: 2.1 Consensus size: 173
5895499 ACTTTTTATA
*
5895509 TATGGATCGACACTTTATTGTTGCACTCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACA
1 TATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATAT-----CA
* *
5895574 AACTACAGAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGA
61 AACTACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAA
*
5895639 TTAGATTGACAAATTACCTATTACATTATACTTTT-AGGTTTCGATGTT
126 TTAGATTGAAAAATTACCTATTACATTATACTTTTGA-GTTTCGATGTT
5895687 TATCGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACC-AAAA-AT-AAACT
1 TAT-GGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCAAACT
*
5895749 ACAAAATTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAATTAG
65 ACAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAATTAG
*
5895814 ATTGAAAAATTGCCTATTACATTATACTTTTGAGTTTCGATGTT
130 ATTGAAAAATTACCTATTACATTATACTTTTGAGTTTCGATGTT
*
5895858 TATGAGATCGATACTTT
1 TATG-GATCGACACTTT
5895875 TTATATATGG
Statistics
Matches: 178, Mismatches: 7, Indels: 13
0.90 0.04 0.07
Matches are distributed among these distances:
170 1 0.01
171 121 0.68
172 1 0.01
177 2 0.01
178 7 0.04
179 46 0.26
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (173 bp):
TATGGATCGACACTTTATTGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCAAACTA
CAAAAGTGTCGATACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCAATTAGA
TTGAAAAATTACCTATTACATTATACTTTTGAGTTTCGATGTT
Found at i:5896162 original size:18 final size:18
Alignment explanation
Indices: 5896139--5896199 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
5896129 TCTCATTCAT
*
5896139 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
5896157 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
5896176 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
5896195 AATTA
1 AATTA
5896200 ACCCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:5896175 original size:19 final size:19
Alignment explanation
Indices: 5896151--5896199 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
5896141 TTATATTCAC
5896151 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
5896170 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
5896189 ATACAAAATTA
1 ATACAAAATTA
5896200 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:5898028 original size:33 final size:33
Alignment explanation
Indices: 5897991--5898056 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
5897981 CATCTTAATA
*
5897991 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
5898024 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
5898057 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:5898114 original size:21 final size:21
Alignment explanation
Indices: 5898089--5898154 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
5898079 CCCCCTTGTG
* *
5898089 TCTCTCAAGTGTATCTTCGAC
1 TCTCTCAAGTTTCTCTTCGAC
5898110 TCTCTCAAGTTTCTCTTCGAC
1 TCTCTCAAGTTTCTCTTCGAC
* *
5898131 TCTATCAAGTTTCTCTTTGAC
1 TCTCTCAAGTTTCTCTTCGAC
5898152 TCT
1 TCT
5898155 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.29, G:0.11, T:0.44
Consensus pattern (21 bp):
TCTCTCAAGTTTCTCTTCGAC
Found at i:5899574 original size:42 final size:42
Alignment explanation
Indices: 5899468--5899953 Score: 288
Period size: 42 Copynumber: 11.9 Consensus size: 42
5899458 GGAAAATAAT
* * **
5899468 GTACTTTAGTGGCATTTTTA-TACAAACGCCGCTAA--AGGTC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTA-CAC
*
5899508 GTACTTTAGTGGCGTTTTAAGCACAAACGCCGCTAATTACAC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * * *
5899550 GTATTTTAGTGGTATTTTACGCACAAACGCTGCTAATTACAC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * * * * * * * * * * *
5899592 GCACTATAATGGCGTTTTTA-TATAAACACTGATAAATAC-T
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * **
5899632 GTACTTTAGTGGTGATTTT-A-TACAAACGCCGCTAA--AGGTC
1 GTACTTTAGTGG-CATTTTAAGCACAAACGCCGCTAATTA-CAC
* * * *
5899672 GTACTTTAGTGCCGTTTTAAGCAAAAACGCCGCTAATTACAT
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * *
5899714 GTTCTTTAGTGGCGTTTTATA-CACAAACGCCACTAATTACAC
1 GTACTTTAGTGGCATTTTA-AGCACAAACGCCGCTAATTACAC
* * * * * * * ** *
5899756 ATACTCTAGTTGCATTTTTA-TATAAATGCCGAGAAATACTA-
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTAC-AC
* * * * ***
5899797 -TACTTTAGTGGCGTTTTTA-TAAAAACGCCGCTAA-TGGTC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * * *
5899836 GCACTTTAGTGGCGTTTTAAGCACAAATGCCACTAATTACAC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
* * *
5899878 GTAATTTTGTGGCATTTTATGCACAAACGCCGCTAATTACAC
1 GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
5899920 GTACTTTAGTGGCATTTTTAA--A-AAACGCCGCTAA
1 GTACTTTAGTGGCA-TTTTAAGCACAAACGCCGCTAA
5899954 AGGTCGTCTT
Statistics
Matches: 339, Mismatches: 90, Indels: 34
0.73 0.19 0.07
Matches are distributed among these distances:
38 1 0.00
39 5 0.01
40 107 0.32
41 70 0.21
42 148 0.44
43 8 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (42 bp):
GTACTTTAGTGGCATTTTAAGCACAAACGCCGCTAATTACAC
Found at i:5899741 original size:164 final size:162
Alignment explanation
Indices: 5899461--5899939 Score: 627
Period size: 164 Copynumber: 2.9 Consensus size: 162
5899451 AAACGCCGGA
* *
5899461 AAATAATGTACTTTAGTGGCATTTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGGCGTTTT
1 AAATACTGTACTTTAGTGGGA-TTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGGCGTTTT
* * *
5899526 AAGCACAAACGCCGCTAATTACACGTATTTTAGTGGTATTTTACGCACAAACGCTGCTAATTACA
65 AAGCACAAACGCCGCTAATTACACGT-TTTTAGTGGCATTTTATGCACAAACGCCGCTAATTACA
* * * * *
5899591 CGCACTATAATGGCGTTTTTATATAAACACTGAT
129 CGTACTATAGTGGCATTTTTATATAAACACCGAG
*
5899625 AAATACTGTACTTTAGTGGTGATTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGCCGTTTT
1 AAATACTGTACTTTAGTGG-GATTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGGCGTTTT
* * * * *
5899690 AAGCAAAAACGCCGCTAATTACATGTTCTTTAGTGGCGTTTTATACACAAACGCCACTAATTACA
65 AAGCACAAACGCCGCTAATTACACGTT-TTTAGTGGCATTTTATGCACAAACGCCGCTAATTACA
* * * **
5899755 CATACTCTAGTTGCATTTTTATATAAATGCCGAG
129 CGTACTATAGTGGCATTTTTATATAAACACCGAG
* * * * *
5899789 AAATACTATACTTTAGTGGCGTTTTTATAAAAACGCCGCTAATGGTCGCACTTTAGTGGCGTTTT
1 AAATACTGTACTTTAGTGG-GATTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGGCGTTTT
* *
5899854 AAGCACAAATGCCACTAATTACACGTAATTTT-GTGGCATTTTATGCACAAACGCCGCTAATTAC
65 AAGCACAAACGCCGCTAATTACACGT--TTTTAGTGGCATTTTATGCACAAACGCCGCTAATTAC
*
5899918 ACGTACTTTAGTGGCATTTTTA
128 ACGTACTATAGTGGCATTTTTA
5899940 AAAAACGCCG
Statistics
Matches: 273, Mismatches: 38, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
163 1 0.00
164 267 0.98
165 4 0.01
166 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (162 bp):
AAATACTGTACTTTAGTGGGATTTTATACAAACGCCGCTAAAGGTCGTACTTTAGTGGCGTTTTA
AGCACAAACGCCGCTAATTACACGTTTTTAGTGGCATTTTATGCACAAACGCCGCTAATTACACG
TACTATAGTGGCATTTTTATATAAACACCGAG
Found at i:5899893 original size:122 final size:121
Alignment explanation
Indices: 5899717--5899959 Score: 294
Period size: 122 Copynumber: 2.0 Consensus size: 121
5899707 ATTACATGTT
* * *
5899717 CTTTAGTGGCGTTTTATACACAAACGCCACTAATTACACATACTCTAGTTGCATTTTTAT-ATAA
1 CTTTAGTGGCGTTTTATACACAAACGCCACTAATTACACATAATCTAGTGGCA-TTTTATCACAA
* * *
5899781 ATGCCGAGAAATACTA-TACTTTAGTGGCGTTTTTATAAAAACGCCGCTAATGGTCGCA
65 ACGCCGAGAAATAC-ACTACTTTAGTGGCATTTTTA-AAAAACGCCGCTAAAGGTCGCA
* * * *
5899839 CTTTAGTGGCGTTTTA-AGCACAAATGCCACTAATTACACGTAATTTTGTGGCATTTTATGCACA
1 CTTTAGTGGCGTTTTATA-CACAAACGCCACTAATTACACATAATCTAGTGGCATTTTAT-CACA
** *
5899903 AACGCCGCTAATTACACGTACTTTAGTGGCATTTTTAAAAAACGCCGCTAAAGGTCG
64 AACGCCGAGAAATACAC-TACTTTAGTGGCATTTTTAAAAAACGCCGCTAAAGGTCG
5899960 TCTTGATCCA
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
121 7 0.07
122 46 0.45
123 32 0.31
124 18 0.17
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (121 bp):
CTTTAGTGGCGTTTTATACACAAACGCCACTAATTACACATAATCTAGTGGCATTTTATCACAAA
CGCCGAGAAATACACTACTTTAGTGGCATTTTTAAAAAACGCCGCTAAAGGTCGCA
Found at i:5901444 original size:27 final size:29
Alignment explanation
Indices: 5901378--5901444 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 29
5901368 TAACATTAGT
*
5901378 TATAAAGGAGTTAACACTAGTACTTTCAAAA
1 TATAAAGGAGTTAACACTAGTA-TAT-AAAA
5901409 TATAAAGGAGTTAACACTAGT-TAT-AAA
1 TATAAAGGAGTTAACACTAGTATATAAAA
5901436 TATAAAGGA
1 TATAAAGGA
5901445 CTTCCATTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 12 0.34
29 2 0.06
31 21 0.60
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (29 bp):
TATAAAGGAGTTAACACTAGTATATAAAA
Found at i:5905423 original size:43 final size:43
Alignment explanation
Indices: 5905078--5905426 Score: 538
Period size: 43 Copynumber: 8.1 Consensus size: 43
5905068 ACGGTCATTA
* * * * *
5905078 GCGGCGTTTGTATCAAAAAACGGCGCTATAGATCT-AACCTTTT
1 GCGGCGTTTGT-CCCAAAAACGCCGCTATAGATCTCGACCTATT
* * *
5905121 GTGGCGTTTGTTCCAAAAACGTCGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
*
5905164 GCGGTGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
*
5905207 GAGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
* *
5905250 GAGGCGTTTGTCCCAAAAACGCTGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
* *
5905293 GAGGCGTTTGTCCCAAAAACGCTGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
5905336 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
* *
5905379 GCGGCGTTTGTCCTAAAAACGCCGTTATAGATCTCGACCTATT
1 GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
5905422 GCGGC
1 GCGGC
5905427 ATTTTTTGTT
Statistics
Matches: 289, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
42 21 0.07
43 268 0.93
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (43 bp):
GCGGCGTTTGTCCCAAAAACGCCGCTATAGATCTCGACCTATT
Found at i:5906624 original size:20 final size:19
Alignment explanation
Indices: 5906569--5906615 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
5906559 TCCGATATCG
5906569 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
5906588 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
5906609 TTTTACC
1 TTTTACC
5906616 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:5906840 original size:181 final size:182
Alignment explanation
Indices: 5906536--5906949 Score: 614
Period size: 181 Copynumber: 2.3 Consensus size: 182
5906526 CGTACTTACG
* *
5906536 AAAGTATCGACACTTTCAATATATCCGATATCGTTTTACCGGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
5906601 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATATTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGGTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
*
5906666 AGGCGCTAAAACTACTTCTCTTTTAAAATCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTACTTCTCTTTTAAAATCACAAAGTGTCGATCCTTATATT
* *
5906717 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGATTTTATCATTTTGATACTGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
5906782 TATCATATTTTTACTTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGGTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** * * * * *
5906847 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATTCTTTTATT
131 AGGAGCTAAAACTACTTCTCTTTTAAAATCACAAAGTGTCGATCCTTATATT
* * * * *
5906899 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCAT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCAT
5906950 AGTTTTACAT
Statistics
Matches: 208, Mismatches: 24, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
181 162 0.78
182 46 0.22
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGGTATATCGTTGTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTACTTCTCTTTTAAAATCACAAAGTGTCGATCCTTATATT
Found at i:5911808 original size:29 final size:29
Alignment explanation
Indices: 5911766--5911821 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
5911756 TCAAACAATT
*
5911766 ATGTTTAGATAATATTTTTTTTGATAAGA
1 ATGTTTAGACAATATTTTTTTTGATAAGA
5911795 ATGTTTAGACAATATTTTTTTTGATAA
1 ATGTTTAGACAATATTTTTTTTGATAA
5911822 AAAGGAAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (29 bp):
ATGTTTAGACAATATTTTTTTTGATAAGA
Found at i:5931403 original size:22 final size:22
Alignment explanation
Indices: 5931370--5931412 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
5931360 AAACCAAAAG
5931370 CACAGCTCCTAA-CAATATCCTC
1 CACAGCTCCTAACCAAT-TCCTC
5931392 CACAG-TCACTAACCAATTCCT
1 CACAGCTC-CTAACCAATTCCT
5931413 GACTTAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.11
22 13 0.68
23 4 0.21
ACGTcount: A:0.33, C:0.40, G:0.05, T:0.23
Consensus pattern (22 bp):
CACAGCTCCTAACCAATTCCTC
Found at i:5934886 original size:34 final size:34
Alignment explanation
Indices: 5934825--5934892 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
5934815 TTTATTATCG
* * *
5934825 AGGGTTAGAGTGTTATGTCTATCTTATGTTATTC
1 AGGGTTAGAATGTTATGTCTATATTATGTAATTC
*
5934859 AGGGTTAGAATG-TATTGTGTATATTATGTAATTC
1 AGGGTTAGAATGTTA-TGTCTATATTATGTAATTC
5934893 TGGTCTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 2 0.07
34 27 0.93
ACGTcount: A:0.25, C:0.06, G:0.24, T:0.46
Consensus pattern (34 bp):
AGGGTTAGAATGTTATGTCTATATTATGTAATTC
Found at i:5935615 original size:15 final size:15
Alignment explanation
Indices: 5935595--5935635 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
5935585 GTGGCCGACC
5935595 GAACCGAATTACCAT
1 GAACCGAATTACCAT
5935610 GAACCGAATTACCAT
1 GAACCGAATTACCAT
*
5935625 TAACCGAATTA
1 GAACCGAATTA
5935636 ACCGAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.22
Consensus pattern (15 bp):
GAACCGAATTACCAT
Found at i:5935989 original size:22 final size:22
Alignment explanation
Indices: 5935956--5935998 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
5935946 AAACCAAAAG
5935956 CACAGCTCCTAA-CAATATCCTC
1 CACAGCTCCTAACCAAT-TCCTC
5935978 CACAG-TCACTAACCAATTCCT
1 CACAGCTC-CTAACCAATTCCT
5935999 GACTTAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.11
22 13 0.68
23 4 0.21
ACGTcount: A:0.33, C:0.40, G:0.05, T:0.23
Consensus pattern (22 bp):
CACAGCTCCTAACCAATTCCTC
Found at i:5953796 original size:136 final size:136
Alignment explanation
Indices: 5953552--5953807 Score: 458
Period size: 136 Copynumber: 1.9 Consensus size: 136
5953542 CTCTGCTGCA
* * *
5953552 TTGAGCATAGACATTAACTCGATCCATTGCGCAAGTTCCCAATTGCATAGATTCCTTCTCATTAA
1 TTGAGCATAGACATTAACTCGACCCATTGCGCAAGTTCCCAATCGCATAGATTCCTTCTCAGTAA
5953617 GACAAACCATGACCATCCCTCCAACCCATAACTGCCGAACTCAGCAATCTTGCCCAATCGCATAG
66 GACAAACCATGACCATCCCTCCAACCCATAACTGCCGAACTCAGCAATCTTGCCCAATCGCATAG
5953682 ACATTG
131 ACATTG
* *
5953688 TTGAGGATAGACATTAACTTGACCCATTGCGCAAGTTCCCAATCGCATAGATTCCTTCTCAGTAA
1 TTGAGCATAGACATTAACTCGACCCATTGCGCAAGTTCCCAATCGCATAGATTCCTTCTCAGTAA
*
5953753 GACAAACCATGACCATCCCTCCAACCCATATCTGCCGAACTCAGCAATCTTGCCC
66 GACAAACCATGACCATCCCTCCAACCCATAACTGCCGAACTCAGCAATCTTGCCC
5953808 TCATTGTTGT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
136 114 1.00
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.25
Consensus pattern (136 bp):
TTGAGCATAGACATTAACTCGACCCATTGCGCAAGTTCCCAATCGCATAGATTCCTTCTCAGTAA
GACAAACCATGACCATCCCTCCAACCCATAACTGCCGAACTCAGCAATCTTGCCCAATCGCATAG
ACATTG
Found at i:5968886 original size:34 final size:33
Alignment explanation
Indices: 5968848--5968916 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
5968838 AACGTATATT
*
5968848 AAATA-AACAAAAAAAATGAAAAATGAAACTAAAA
1 AAATAGAACAAAAAAAA-GAAAAAT-AAAATAAAA
* *
5968882 AAATAGAATAAAAAAAAGATAAATAAAATAAAA
1 AAATAGAACAAAAAAAAGAAAAATAAAATAAAA
5968915 AA
1 AA
5968917 TGTTAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 10 0.32
34 11 0.35
35 10 0.32
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.13
Consensus pattern (33 bp):
AAATAGAACAAAAAAAAGAAAAATAAAATAAAA
Found at i:5968911 original size:20 final size:20
Alignment explanation
Indices: 5968882--5968938 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
5968872 GAAACTAAAA
*
5968882 AAATAGAATAAAAAAAAGAT
1 AAATAAAATAAAAAAAAGAT
* *
5968902 AAATAAAAT-AAAAAATGTT
1 AAATAAAATAAAAAAAAGAT
*
5968921 AAATAAACTAAAGAAAAA
1 AAATAAAATAAA-AAAAA
5968939 AAGTGCTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 16 0.53
20 10 0.33
21 4 0.13
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.18
Consensus pattern (20 bp):
AAATAAAATAAAAAAAAGAT
Found at i:5970156 original size:37 final size:37
Alignment explanation
Indices: 5970100--5970551 Score: 226
Period size: 37 Copynumber: 12.6 Consensus size: 37
5970090 TATATATTCC
* *
5970100 AAAACT-TATATAATATATATTTTTTAAAAATATTTT
1 AAAACTATATATTATATATATTTTTCAAAAATATTTT
* * **
5970136 AAAATTATATATTATATATATATTTTTAAAAACGTTTT
1 AAAACTATATATTATATATAT-TTTTCAAAAATATTTT
* * * *
5970174 ----C-A-ACA-T-CATATAGTTTTCAAAAATGTTTTTT
1 AAAACTATATATTATATATATTTTTCAAAAA--TATTTT
* * * *
5970205 TAAGCTATATA-T-TATAT-GTTTTC-GAAATGATTTT
1 AAAACTATATATTATATATATTTTTCAAAAAT-ATTTT
*
5970239 CAAAACTATATAATATATATATGTTTTC-AAAATATTTT
1 -AAAACTATATATTATATATAT-TTTTCAAAAATATTTT
** * * *
5970277 TTAA--A-A-ACTATATACA-TTTTC-AAAATATTTTA
1 AAAACTATATATTATATATATTTTTCAAAAATA-TTTT
*
5970309 AAAACTATATA--ATATATA-TTTTCAAAAATGTTTT
1 AAAACTATATATTATATATATTTTTCAAAAATATTTT
* *
5970343 AAAAATTATATATTATATTTATTTTT--AAAATATTTTT
1 -AAAACTATATATTATATATATTTTTCAAAAATA-TTTT
* *
5970380 AAAAACTATATAATATATATA-TTTTCAAAAATGTTTT
1 -AAAACTATATATTATATATATTTTTCAAAAATATTTT
* *
5970417 AAAAACTATATATTATAT-TAATTTTC-AAAATGTTTT
1 -AAAACTATATATTATATATATTTTTCAAAAATATTTT
* * * *
5970453 AAAAACTATATAATATATAAATGTTTTCAAACATGTTTTT
1 -AAAACTATATATTATATATAT-TTTTCAAAAAT-ATTTT
* *
5970493 CAAAACTATATATTATATATA--TTTAAAAAATGTTTT
1 -AAAACTATATATTATATATATTTTTCAAAAATATTTT
* *
5970529 CAAACTATGTTATATATATATAT
1 AAAACTAT-ATAT-TATATATAT
5970552 AATAATAATA
Statistics
Matches: 329, Mismatches: 50, Indels: 72
0.73 0.11 0.16
Matches are distributed among these distances:
29 9 0.03
30 5 0.02
31 16 0.05
32 7 0.02
33 10 0.03
34 20 0.06
35 37 0.11
36 59 0.18
37 98 0.30
38 33 0.10
39 13 0.04
40 22 0.07
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (37 bp):
AAAACTATATATTATATATATTTTTCAAAAATATTTT
Found at i:5970185 original size:39 final size:37
Alignment explanation
Indices: 5970106--5970185 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
5970096 TTCCAAAACT
* *
5970106 TATATAATATATATTTTTTAAAAATATTTTAAAATTA
1 TATATAATATATATTTTTTAAAAACATTTTAAAATCA
* * *
5970143 TATATTATATATATATTTTTAAAAACGTTTTCAACATCA
1 TATATAATATATAT-TTTTTAAAAACATTTT-AAAATCA
5970182 TATA
1 TATA
5970186 GTTTTCAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 13 0.36
38 14 0.39
39 9 0.25
ACGTcount: A:0.45, C:0.05, G:0.01, T:0.49
Consensus pattern (37 bp):
TATATAATATATATTTTTTAAAAACATTTTAAAATCA
Found at i:5970214 original size:104 final size:105
Alignment explanation
Indices: 5970100--5970504 Score: 298
Period size: 104 Copynumber: 3.8 Consensus size: 105
5970090 TATATATTCC
5970100 AAAACTTATATAATATATATTTTTTAAAAATATTTT-AAAATTATATATTATATATATATTTTTA
1 AAAAC-TATATAATATATATTTTTTAAAAATATTTTAAAAATTATATATTATATATATATTTTTA
* * * * *
5970164 AAA-ACGTTTTCAACATC-ATATA-GTTTTCAAAAATGTTTTTT
65 AAATA-GTTTTCAAAAACTATATACATTTTC-AAAAT-ATTTTA
* * * ** * * * * *
5970205 TAAGCTATAT-AT-TATATGTTTTCGAAATGATTTTCAAAACTATATAATATATATATGTTTTCA
1 AAAACTATATAATATATATTTTTTAAAAAT-ATTTTAAAAATTATATATTATATATATATTTTTA
* *
5970268 AAATATTTTTTAAAAACTATATACATTTTCAAAATATTTTA
65 AAATAGTTTTCAAAAACTATATACATTTTCAAAATATTTTA
* *
5970309 AAAACTATATAATATATA-TTTTCAAAAATGTTTTAAAAATTATATATTATAT-T-TATTTTTAA
1 AAAACTATATAATATATATTTTTTAAAAATATTTTAAAAATTATATATTATATATATATTTTTAA
* * *
5970371 AATA-TTTTTAAAAACTATATAATATATATATTTTCAAAAATGTTTTA
66 AATAGTTTTCAAAAAC-------TATATACATTTTC-AAAATATTTTA
* * * * * * *
5970418 AAAACTATAT-AT-TATATTAATTTTCAAAATGTTTTAAAAACTATATAATATATAAATGTTTTC
1 AAAACTATATAATATATATT--TTTTAAAAATATTTTAAAAATTATATATTATATATATATTTTT
5970481 AAACAT-GTTTTTC-AAAACTATATA
64 AAA-ATAG-TTTTCAAAAACTATATA
5970505 TTATATATAT
Statistics
Matches: 239, Mismatches: 38, Indels: 45
0.74 0.12 0.14
Matches are distributed among these distances:
101 11 0.05
102 24 0.10
103 8 0.03
104 71 0.30
105 23 0.10
106 15 0.06
107 4 0.02
108 15 0.06
109 20 0.08
110 29 0.12
112 8 0.03
113 7 0.03
114 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.46
Consensus pattern (105 bp):
AAAACTATATAATATATATTTTTTAAAAATATTTTAAAAATTATATATTATATATATATTTTTAA
AATAGTTTTCAAAAACTATATACATTTTCAAAATATTTTA
Found at i:5970307 original size:29 final size:30
Alignment explanation
Indices: 5970262--5970319 Score: 100
Period size: 29 Copynumber: 1.9 Consensus size: 30
5970252 TATATATATG
5970262 TTTTCAAAATATTTTTTAAAAACTATATACA
1 TTTTCAAAATA-TTTTTAAAAACTATATACA
5970293 TTTTCAAAATA-TTTTAAAAACTATATA
1 TTTTCAAAATATTTTTAAAAACTATATA
5970320 ATATATATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 16 0.59
31 11 0.41
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTCAAAATATTTTTAAAAACTATATACA
Found at i:5970947 original size:16 final size:17
Alignment explanation
Indices: 5970892--5970949 Score: 66
Period size: 16 Copynumber: 3.4 Consensus size: 17
5970882 AAGAGAATAT
*
5970892 TATAATATTGAAATTATA
1 TATAATTTTG-AATTATA
5970910 TATTAATTTT-AATTATA
1 TA-TAATTTTGAATTATA
*
5970927 AATAATTTTGAATTA-A
1 TATAATTTTGAATTATA
5970943 TATAATT
1 TATAATT
5970950 ATATATACGA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 14 0.40
17 13 0.37
18 2 0.06
19 6 0.17
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATAATTTTGAATTATA
Found at i:5972103 original size:28 final size:27
Alignment explanation
Indices: 5972066--5972119 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
5972056 TCCTTCTAAA
*
5972066 TAAAACT-AAAATATTGACTTTAAATTT
1 TAAAACTAAAAATATT-AATTTAAATTT
5972093 TAAAATCTAAAAATATTAATTTAAATT
1 TAAAA-CTAAAAATATTAATTTAAATT
5972120 AAATTAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 5 0.21
28 11 0.46
29 8 0.33
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.41
Consensus pattern (27 bp):
TAAAACTAAAAATATTAATTTAAATTT
Found at i:5977094 original size:33 final size:33
Alignment explanation
Indices: 5977052--5977135 Score: 132
Period size: 33 Copynumber: 2.5 Consensus size: 33
5977042 TTTTGTTCTT
*
5977052 ATCAAGTTCGGCATTATCAGTTGAACTTCGAAG
1 ATCAAGTTCGACATTATCAGTTGAACTTCGAAG
* *
5977085 ATCAAGTTCGACATTATCAGTTGGACTTTGAAG
1 ATCAAGTTCGACATTATCAGTTGAACTTCGAAG
*
5977118 ATCAAGTTCGCCATTATC
1 ATCAAGTTCGACATTATC
5977136 TTTTTTCGAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (33 bp):
ATCAAGTTCGACATTATCAGTTGAACTTCGAAG
Found at i:5979947 original size:23 final size:23
Alignment explanation
Indices: 5979921--5979977 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
5979911 GTTTGGTTCG
* *
5979921 TTTAATATTCACAAATATATTTA
1 TTTAATATTCACAAACAAATTTA
*
5979944 TTTAA-AGTTGACAAACAAATTTA
1 TTTAATA-TTCACAAACAAATTTA
5979967 TTTATATATTC
1 TTTA-ATATTC
5979978 CAACTTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
22 1 0.04
23 22 0.81
24 3 0.11
25 1 0.04
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.46
Consensus pattern (23 bp):
TTTAATATTCACAAACAAATTTA
Found at i:5994787 original size:23 final size:23
Alignment explanation
Indices: 5994753--5994839 Score: 88
Period size: 23 Copynumber: 3.7 Consensus size: 23
5994743 ACATATTATA
5994753 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
5994776 TGGCACTTCGGTGCATTTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
5994799 CGGTC-CTTCGG-GACAAAATTCTACG
1 TGG-CACTACGGTG-C--AATTCTACG
5994824 TGGCACTACGGTGCAA
1 TGGCACTACGGTGCAA
5994840 ATTTATATGA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
22 1 0.02
23 32 0.62
24 2 0.04
25 16 0.31
26 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:6002491 original size:18 final size:18
Alignment explanation
Indices: 6002468--6002520 Score: 88
Period size: 18 Copynumber: 2.9 Consensus size: 18
6002458 ACTGAATATT
*
6002468 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
6002486 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
6002504 TGTCCCGAAGGATCACT
1 TGTCCCGAAGGACCACT
6002521 GATAATCCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:6003230 original size:18 final size:18
Alignment explanation
Indices: 6003184--6003232 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
6003174 GCATTCTTCA
*
6003184 TGCA-TCGATGCTCTAAT
1 TGCATTCGATGTTCTAAT
6003201 TGCATTCGATGTTCTAAT
1 TGCATTCGATGTTCTAAT
*
6003219 TGCATTTGATGTTC
1 TGCATTCGATGTTC
6003233 ATTTATTTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.43
Consensus pattern (18 bp):
TGCATTCGATGTTCTAAT
Found at i:6005573 original size:21 final size:21
Alignment explanation
Indices: 6005547--6005643 Score: 97
Period size: 21 Copynumber: 4.6 Consensus size: 21
6005537 TGTAAATATG
6005547 AAATAGATGTGATGTTAACAT
1 AAATAGATGTGATGTTAACAT
* *
6005568 AAATAGATATGATATTAACAT
1 AAATAGATGTGATGTTAACAT
** *
6005589 GCAGAGATGTGATGTTAACAT
1 AAATAGATGTGATGTTAACAT
* * * *
6005610 AAAAATATATAATGTTAACAT
1 AAATAGATGTGATGTTAACAT
6005631 GAAA-AGATGTGAT
1 -AAATAGATGTGAT
6005644 ATTGATAAGA
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
21 56 0.95
22 3 0.05
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.31
Consensus pattern (21 bp):
AAATAGATGTGATGTTAACAT
Found at i:6005610 original size:42 final size:42
Alignment explanation
Indices: 6005544--6005643 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
6005534 AAATGTAAAT
* *
6005544 ATGAAATAGATGTGATGTTAACATAAATAGATATGATATTAAC
1 ATGAAA-AGATGTGATGTTAACATAAAAAGATATAATATTAAC
* * * *
6005587 ATGCAGAGATGTGATGTTAACATAAAAATATATAATGTTAAC
1 ATGAAAAGATGTGATGTTAACATAAAAAGATATAATATTAAC
6005629 ATGAAAAGATGTGAT
1 ATGAAAAGATGTGAT
6005644 ATTGATAAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 45 0.92
43 4 0.08
ACGTcount: A:0.46, C:0.05, G:0.18, T:0.31
Consensus pattern (42 bp):
ATGAAAAGATGTGATGTTAACATAAAAAGATATAATATTAAC
Found at i:6005679 original size:17 final size:18
Alignment explanation
Indices: 6005653--6005697 Score: 83
Period size: 17 Copynumber: 2.6 Consensus size: 18
6005643 TATTGATAAG
6005653 AAAATATATTTTTTTATA
1 AAAATATATTTTTTTATA
6005671 AAAAT-TATTTTTTTATA
1 AAAATATATTTTTTTATA
6005688 AAAATATATT
1 AAAATATATT
6005698 CTCCATCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
AAAATATATTTTTTTATA
Found at i:6008879 original size:2 final size:2
Alignment explanation
Indices: 6008874--6008910 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6008864 CATAGGTGTG
6008874 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6008911 TCATAGATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6013281 original size:19 final size:20
Alignment explanation
Indices: 6013259--6013300 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
6013249 AAAATTTTAC
6013259 TTTA-AAATAAAAAACATAA
1 TTTATAAATAAAAAACATAA
** *
6013278 TTTATTTATAAAAAATATAA
1 TTTATAAATAAAAAACATAA
6013298 TTT
1 TTT
6013301 TTTTCTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTATAAATAAAAAACATAA
Found at i:6013939 original size:22 final size:22
Alignment explanation
Indices: 6013895--6013937 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6013885 TTAGATTAAA
* *
6013895 ATATAATTTTATACTGATATTT
1 ATATAATTGTATACTAATATTT
6013917 ATATAATTGTATACTAA-ATTT
1 ATATAATTGTATACTAATATTT
6013938 TAAATGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
ATATAATTGTATACTAATATTT
Found at i:6018376 original size:215 final size:216
Alignment explanation
Indices: 6017903--6018405 Score: 832
Period size: 215 Copynumber: 2.3 Consensus size: 216
6017893 ATTTTATGAA
* *
6017903 AAATACAAATTTA-AGAATTAAATTGAACAAATATGAAATTACAAATAAAAAATTAAATAAATTA
1 AAATA-AAATTTAGAGGATTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTA
* *
6017967 AACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACA
65 AACAACACACATTGATGAGGAATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATAC-
*
6018032 AAAAAAATATTAAATTATACCTATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAGTAAGTAAT
129 AAAAAAATATTAAATTATACCTATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAAT
6018097 AAGTATGGATCAATTTCAGATGC
194 AAGTATGGATCAATTTCAGATGC
6018120 AAATAAAATTTAGAGGATTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
1 AAATAAAATTTAGAGGATTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
* * * *
6018185 ACAACGCACATTGATGAGGAATCAAATTAAAATAATTTTCAATTTTGAGGTTGAAATTAATAC-A
66 ACAACACACATTGATGAGGAATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAA
*
6018249 AAAAATATTAAATTATA-CTCATTTAAAAAGTTATGGGCCAATTAAAAAATATAAATAAGTAATA
131 AAAAATATTAAATTATACCT-ATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATA
*
6018313 AGTATGGGTCAATTTCAGATGC
195 AGTATGGATCAATTTCAGATGC
* * *
6018335 AAATAAAATTTAGAGGACTAAATTAAACAAATATTAAATTACAAATAAAAATTTAAATAAATTAA
1 AAATAAAATTTAGAGGATTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
6018400 ACAACA
66 ACAACA
6018406 AAAAGGGATC
Statistics
Matches: 269, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
214 2 0.01
215 148 0.55
216 7 0.03
217 112 0.42
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (216 bp):
AAATAAAATTTAGAGGATTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
ACAACACACATTGATGAGGAATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAA
AAAAATATTAAATTATACCTATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATAA
GTATGGATCAATTTCAGATGC
Found at i:6018494 original size:2 final size:2
Alignment explanation
Indices: 6018489--6018763 Score: 87
Period size: 2 Copynumber: 137.0 Consensus size: 2
6018479 AAAACAACTA
6018489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
6018530 GT AT AA ACT AT AT AT ACC AT GT AT AA ACT AT A- AT ACT AT AT AGT
1 AT AT AT A-T AT AT AT A-T AT AT AT AT A-T AT AT AT A-T AT AT A-T
* * * * *
6018574 TT AT AT AT GA- ACT AT -T GA- ACT AT AT AG AA ACT AC AT AGT TT
1 AT AT AT AT -AT A-T AT AT -AT A-T AT AT AT AT A-T AT AT A-T AT
* * *
6018615 AT AT AT AA AT -T AT AT AT GA- AT -T AT AT AT AA ACT AT AC A- AT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT A-T AT AT AT AT
* * * *
6018655 TT AT AT TT AT AT AT GT AT A- AT -T AT AA AT A- AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
6018693 GT AT AA AT -T AT AT AGT TT AT -T A- AT AT AA ACT AT AT AGT TT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T AT AT A-T AT
6018733 AT AT AT AT AT AT AT AT AT AT AT AGT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
6018764 GGTTTAGGGA
Statistics
Matches: 199, Mismatches: 41, Indels: 66
0.65 0.13 0.22
Matches are distributed among these distances:
1 16 0.08
2 165 0.83
3 18 0.09
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6018627 original size:11 final size:11
Alignment explanation
Indices: 6018613--6018650 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
6018603 ACTACATAGT
6018613 TTATATATAAA
1 TTATATATAAA
*
6018624 TTATATATGAA
1 TTATATATAAA
6018635 TTATATATAAA
1 TTATATATAAA
*
6018646 CTATA
1 TTATA
6018651 CAATTTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (11 bp):
TTATATATAAA
Found at i:6018677 original size:40 final size:39
Alignment explanation
Indices: 6018633--6018749 Score: 100
Period size: 37 Copynumber: 3.0 Consensus size: 39
6018623 ATTATATATG
6018633 AATTATATATAAACTATACAATTTATATTTATATATGTAT
1 AATTATATATAAACTATA-AATTTATATTTATATATGTAT
* * *
6018673 AATTATAAAT-AA-TATATATTGTATAAATTATATA-GT-T
1 AATTATATATAAACTATAAATT-TAT-ATTTATATATGTAT
* * * *
6018710 TATTA-ATATAAACTATATAGTTTATATATATATATATAT
1 AATTATATATAAACTATA-AATTTATATTTATATATGTAT
6018749 A
1 A
6018750 TATATAGTAT
Statistics
Matches: 59, Mismatches: 11, Indels: 15
0.69 0.13 0.18
Matches are distributed among these distances:
36 3 0.05
37 17 0.29
38 17 0.29
39 13 0.22
40 9 0.15
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (39 bp):
AATTATATATAAACTATAAATTTATATTTATATATGTAT
Found at i:6018844 original size:20 final size:20
Alignment explanation
Indices: 6018819--6018879 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
6018809 TATAAACTAC
6018819 ATACTATAATTTATATTTAT
1 ATACTATAATTTATATTTAT
6018839 ATAC--T-ATTTATA--TA-
1 ATACTATAATTTATATTTAT
*
6018853 A-ACTATAGTTTATATTTAT
1 ATACTATAATTTATATTTAT
6018872 ATACTATA
1 ATACTATA
6018880 TATATGAACT
Statistics
Matches: 33, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
13 2 0.06
14 1 0.03
15 3 0.09
16 6 0.18
17 7 0.21
18 3 0.09
19 1 0.03
20 10 0.30
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (20 bp):
ATACTATAATTTATATTTAT
Found at i:6018865 original size:33 final size:32
Alignment explanation
Indices: 6018821--6018936 Score: 132
Period size: 33 Copynumber: 3.7 Consensus size: 32
6018811 TAAACTACAT
*
6018821 ACTATAATTTATATTTATATACTATTTATATAA
1 ACTATAGTTTATATTTATATACTA-TTATATAA
*
6018854 ACTATAGTTTATATTTATATACTATATATATGA
1 ACTATAGTTTATATTTATATACTAT-TATATAA
* *
6018887 ACTATAGTTTACA--TATGA-ACTA-TATATAT
1 ACTATAGTTTATATTTAT-ATACTATTATATAA
*
6018916 ACTATAGTTGATATTTATATA
1 ACTATAGTTTATATTTATATA
6018937 TGAACTATAG
Statistics
Matches: 71, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
29 16 0.23
30 1 0.01
31 11 0.15
32 2 0.03
33 41 0.58
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (32 bp):
ACTATAGTTTATATTTATATACTATTATATAA
Found at i:6018902 original size:18 final size:18
Alignment explanation
Indices: 6018881--6019043 Score: 111
Period size: 18 Copynumber: 8.7 Consensus size: 18
6018871 TATACTATAT
6018881 ATATGAACTATAGTTTAC
1 ATATGAACTATAGTTTAC
6018899 ATATGAACTATA-TATATAC
1 ATATGAACTATAGT-T-TAC
** *
6018918 -TAT-AGTTGATA-TTTAT
1 ATATGAACT-ATAGTTTAC
6018934 ATATGAACTATAGTTTAC
1 ATATGAACTATAGTTTAC
* *
6018952 ATATAAACTATATAGTTTAT
1 ATATGAAC--TATAGTTTAC
*
6018972 ATACT-AACTATATTTTAC
1 ATA-TGAACTATAGTTTAC
* *
6018990 ATATAAATTATAGTTGATATTTAC
1 ATATGAACTATA---G---TTTAC
6019014 ATATGAACTATAGTTTAC
1 ATATGAACTATAGTTTAC
6019032 ATATGAACTATA
1 ATATGAACTATA
6019044 TATATAAACT
Statistics
Matches: 115, Mismatches: 14, Indels: 32
0.71 0.09 0.20
Matches are distributed among these distances:
16 2 0.02
17 11 0.10
18 67 0.58
19 3 0.03
20 15 0.13
21 2 0.02
24 15 0.13
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (18 bp):
ATATGAACTATAGTTTAC
Found at i:6018902 original size:29 final size:30
Alignment explanation
Indices: 6018836--6018965 Score: 114
Period size: 33 Copynumber: 4.4 Consensus size: 30
6018826 AATTTATATT
* * *
6018836 TATATACTATTTATATAAACTATAGTTTATA
1 TATA-ACTATATATATGAACTATAGTTTACA
6018867 TTTATATACTATATATATGAACTATAGTTTACA
1 --TATA-ACTATATATATGAACTATAGTTTACA
*
6018900 TATGAACTATATATAT--ACTATAG-TT-GA
1 TAT-AACTATATATATGAACTATAGTTTACA
6018927 TAT---T-TATATATGAACTATAGTTTACA
1 TATAACTATATATATGAACTATAGTTTACA
6018953 TATAAACTATATA
1 TAT-AACTATATA
6018966 GTTTATATAC
Statistics
Matches: 82, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
22 7 0.09
23 1 0.01
24 7 0.09
25 2 0.02
26 4 0.05
27 4 0.05
28 2 0.02
29 7 0.09
30 1 0.01
31 18 0.22
32 1 0.01
33 28 0.34
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (30 bp):
TATAACTATATATATGAACTATAGTTTACA
Found at i:6018956 original size:42 final size:42
Alignment explanation
Indices: 6018910--6019043 Score: 170
Period size: 42 Copynumber: 3.3 Consensus size: 42
6018900 TATGAACTAT
*
6018910 ATATATACTATAGTTGATATTTATATATGAACTATAGTTTAC
1 ATATAAACTATAGTTGATATTTATATATGAACTATAGTTTAC
* *
6018952 ATATAAACTATA--T-A-GTTTATATACT-AACTATATTTTAC
1 ATATAAACTATAGTTGATATTTATATA-TGAACTATAGTTTAC
* *
6018990 ATATAAATTATAGTTGATATTTACATATGAACTATAGTTTAC
1 ATATAAACTATAGTTGATATTTATATATGAACTATAGTTTAC
*
6019032 ATATGAACTATA
1 ATATAAACTATA
6019044 TATATAAACT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
38 31 0.40
39 2 0.03
40 2 0.03
41 2 0.03
42 40 0.52
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.43
Consensus pattern (42 bp):
ATATAAACTATAGTTGATATTTATATATGAACTATAGTTTAC
Found at i:6019083 original size:24 final size:24
Alignment explanation
Indices: 6019056--6019104 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
6019046 TATAAACTAT
*
6019056 ATAGTTTACATA-TGACCTATATAA
1 ATAGTTTA-ATAGTGAACTATATAA
*
6019080 ATAGTTTATTAGTGAACTATATAA
1 ATAGTTTAATAGTGAACTATATAA
6019104 A
1 A
6019105 CTATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (24 bp):
ATAGTTTAATAGTGAACTATATAA
Found at i:6019115 original size:2 final size:2
Alignment explanation
Indices: 6019110--6019218 Score: 53
Period size: 2 Copynumber: 52.0 Consensus size: 2
6019100 ATAAACTATT
* * *
6019110 TA TA TA -A TA TA TA CTA TA TA TA TA AA CTA TA -A TT TA TA TT TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
* * *
6019152 TA TA CTA CA TA CTA TA GTT TA TA TT TA TA TA T- TA TA TA TA TA
1 TA TA -TA TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
6019194 AA AA CTA TA TA TA CTA TA TA GTA TA
1 TA TA -TA TA TA TA -TA TA TA -TA TA
6019219 ATTTACATAT
Statistics
Matches: 82, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
1 3 0.04
2 66 0.80
3 13 0.16
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:6019125 original size:18 final size:18
Alignment explanation
Indices: 6019098--6019158 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
6019088 TTAGTGAACT
*
6019098 ATATAAACTATTTATATA
1 ATATATACTATTTATATA
*
6019116 ATATATACTATATATATA
1 ATATATACTATTTATATA
6019134 A-ACTATA--ATTTATAT-
1 ATA-TATACTATTTATATA
*
6019149 TTATATACTA
1 ATATATACTA
6019159 CATACTATAG
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
15 4 0.11
16 8 0.23
17 2 0.06
18 21 0.60
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATATACTATTTATATA
Found at i:6019140 original size:20 final size:20
Alignment explanation
Indices: 6019038--6019349 Score: 69
Period size: 20 Copynumber: 14.4 Consensus size: 20
6019028 TTACATATGA
6019038 ACTATATATATAAACTATAT
1 ACTATATATATAAACTATAT
* * * * *
6019058 AGTTTACATATGACCTATAT
1 ACTATATATATAAACTATAT
* * *
6019078 AAATAGTTTATTAGTGAACTATAT
1 -ACTA-TATA-TA-TAAACTATAT
*
6019102 AAACTATTTATAT-AA-TATAT
1 --ACTATATATATAAACTATAT
6019122 ACTATATATATAAACTATA-
1 ACTATATATATAAACTATAT
* * * *
6019141 ATTTATATTTATATACTACAT
1 A-CTATATATATAAACTATAT
* **
6019162 ACTATAGTTTAT-ATTTATAT
1 ACTATA-TATATAAACTATAT
*
6019182 ATTATATATATAAAAACTATATAT
1 ACTATATATAT--AAAC--TATAT
6019206 ACTATATAGTATAATTTAC-ATAT
1 ACTATATA-TATAA---ACTATAT
* * *
6019229 GAACTATATATAAAAACCATGTAA
1 --ACTATATATATAAA-C-TATAT
*
6019253 ACTATATACTATAGTTGATATTTATAT
1 ACTATATA-TATA----A-A-CTATAT
* **
6019280 ACTATATAAAATAATTTATACT
1 ACTATAT-ATATAAACTATA-T
6019302 A-TAGTATATATAAACTATAT
1 ACTA-TATATATAAACTATAT
* *
6019322 AATATATATATAAACTACAT
1 ACTATATATATAAACTATAT
*
6019342 ATTATATA
1 ACTATATA
6019350 GTTCATTAGT
Statistics
Matches: 217, Mismatches: 41, Indels: 68
0.67 0.13 0.21
Matches are distributed among these distances:
18 10 0.05
19 7 0.03
20 75 0.35
21 29 0.13
22 18 0.08
23 14 0.06
24 31 0.14
25 15 0.07
26 2 0.01
27 14 0.06
28 2 0.01
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (20 bp):
ACTATATATATAAACTATAT
Found at i:6019147 original size:27 final size:26
Alignment explanation
Indices: 6019124--6019183 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
6019114 TAATATATAC
*
6019124 TATATATATAAACTATAATTTATATT
1 TATATATACAAACTATAATTTATATT
* *
6019150 TATATACTACATACTATAGTTTATATT
1 TATATA-TACAAACTATAATTTATATT
6019177 TATATAT
1 TATATAT
6019184 TATATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.50
Consensus pattern (26 bp):
TATATATACAAACTATAATTTATATT
Found at i:6019377 original size:33 final size:33
Alignment explanation
Indices: 6019333--6019414 Score: 128
Period size: 33 Copynumber: 2.5 Consensus size: 33
6019323 ATATATATAT
*
6019333 AAACTACATATTATATAGTTCATTAGTATACAA
1 AAACTATATATTATATAGTTCATTAGTATACAA
* *
6019366 AAACTATATATTATATAGTTCATTAGTATATAT
1 AAACTATATATTATATAGTTCATTAGTATACAA
*
6019399 AAACTATATAGTATAT
1 AAACTATATATTATAT
6019415 GTAAACTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (33 bp):
AAACTATATATTATATAGTTCATTAGTATACAA
Found at i:6019396 original size:84 final size:83
Alignment explanation
Indices: 6019307--6019465 Score: 228
Period size: 84 Copynumber: 1.9 Consensus size: 83
6019297 ATACTATAGT
6019307 ATATATAAACTATATAATATATATATAAACTACATATTATATAGTTCATTAGTATACAAAAACTA
1 ATATATAAACTATAT-A-ATATATATAAACTACATATTATATAGTTCATTAGTATACAAAAACTA
*
6019372 TATATTATATAGTTCATTAG
64 TATAGTATATAGTTCATTAG
* * * * * *
6019392 TATATATAAACTATATAGTATATGTAAACTATATATTATATAGTTCATTAGTATATATAATCTAT
1 -ATATATAAACTATATAATATATATAAACTACATATTATATAGTTCATTAGTATACAAAAACTAT
6019457 ATAGTATAT
65 ATAGTATAT
6019466 GGTATATACA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
84 50 0.76
85 1 0.02
86 15 0.23
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (83 bp):
ATATATAAACTATATAATATATATAAACTACATATTATATAGTTCATTAGTATACAAAAACTATA
TAGTATATAGTTCATTAG
Found at i:6019421 original size:51 final size:54
Alignment explanation
Indices: 6019365--6019575 Score: 293
Period size: 58 Copynumber: 3.8 Consensus size: 54
6019355 TTAGTATACA
6019365 AAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT-G-T
1 AAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGGAT
*
6019417 -AAACTATATATTATATAGTTCATTAGTATATATAATCTATATAGTATATGGTATAT
1 AAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGG---AT
* *
6019473 ACAAACTATATATTATATAGTGCATTAGTATATATAACCTATATAGTATATGGTATAT
1 A-AAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGG---AT
*
6019531 ACAAACTATATATTATATAGTTCATTACTATATATAAACTATATA
1 A-AAACTATATATTATATAGTTCATTAGTATATATAAACTATATA
6019576 TTGAAAAGTT
Statistics
Matches: 146, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
51 48 0.33
52 1 0.01
56 1 0.01
58 96 0.66
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (54 bp):
AAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGGAT
Found at i:6019444 original size:33 final size:33
Alignment explanation
Indices: 6019407--6019645 Score: 180
Period size: 33 Copynumber: 7.8 Consensus size: 33
6019397 ATAAACTATA
*
6019407 TAGTATATGTAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
6019440 TAGTATATATAATCTATATAGTATAT-G-----
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
6019467 --GTATATACAAACTATATATTATATAGTGCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
6019498 TAGTATATATAACCTATATAGTATAT-G-----
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
6019525 --GTATATACAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
6019556 TACTATATATAAACTATATATTGA-AAAGTTCAT
1 TAGTATATATAAACTATATATT-ATATAGTTCAT
*
6019589 TAGTATATTATAACCTATATATTA-AT--TT-AT
1 TAGTATA-TATAAACTATATATTATATAGTTCAT
* *
6019619 TAATATATATATA-TATATATATATATA
1 TAGTATATATAAACTATATAT-TATATA
6019646 TATTAATTGA
Statistics
Matches: 164, Mismatches: 21, Indels: 44
0.72 0.09 0.19
Matches are distributed among these distances:
25 42 0.26
26 2 0.01
28 7 0.04
29 6 0.04
30 10 0.06
31 2 0.01
32 2 0.01
33 78 0.48
34 15 0.09
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.44
Consensus pattern (33 bp):
TAGTATATATAAACTATATATTATATAGTTCAT
Found at i:6019502 original size:109 final size:112
Alignment explanation
Indices: 6019366--6019575 Score: 327
Period size: 109 Copynumber: 1.9 Consensus size: 112
6019356 TAGTATACAA
*
6019366 AAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT-G-T-AAACTATATAT
1 AAACTATATATTATATAGTGCATTAGTATATATAAACTATATAGTATATGGATAAAACTATATAT
* *
6019428 TATATAGTTCATTAGTATATATAATCTATATAGTATATGGTATATAC
66 TATATAGTTCATTACTATATATAAACTATATAGTATATGGTATATAC
*
6019475 AAACTATATATTATATAGTGCATTAGTATATATAACCTATATAGTATATGGTATATACAAACTAT
1 AAACTATATATTATATAGTGCATTAGTATATATAAACTATATAGTATATGG---ATA-AAACTAT
6019540 ATATTATATAGTTCATTACTATATATAAACTATATA
62 ATATTATATAGTTCATTACTATATATAAACTATATA
6019576 TTGAAAAGTT
Statistics
Matches: 90, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
109 47 0.52
110 1 0.01
114 1 0.01
116 41 0.46
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.42
Consensus pattern (112 bp):
AAACTATATATTATATAGTGCATTAGTATATATAAACTATATAGTATATGGATAAAACTATATAT
TATATAGTTCATTACTATATATAAACTATATAGTATATGGTATATAC
Found at i:6019626 original size:2 final size:2
Alignment explanation
Indices: 6019621--6019648 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6019611 TAATTTATTA
6019621 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6019649 TAATTGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6020219 original size:111 final size:114
Alignment explanation
Indices: 6020024--6020367 Score: 419
Period size: 111 Copynumber: 2.9 Consensus size: 114
6020014 AAACCAACAA
* *
6020024 TGTTCTTCATTTGTTCATCTCAATTATTCCCCAAAACCCTCATTTGATCTTCAAAAACACCAAAA
1 TGTTCTTCATTTGTTCATC-CAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACC-AAA
*
6020089 CCAAAACATTTTCGTGTTTTTTTATCAAACACCCAAA-T-A-T-TCTTC-CG
64 CCAAACCA-TTTCGTGTTTTTTTATCAAACACCCAAATTCATTGTCTTCTCG
* * *
6020136 TGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTAATATTCAAAAACACCTAAAC
1 TGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACC-AAAC
*
6020201 ACAAACCATTTCGTGTTTTTTTCGATCAAACACCCAAATTTCATTGGTGTTCATTCG
65 -CAAACCATTTCGTGTTTTTTT--ATCAAACACCCAAA-TTCATT-GTCTTC--TCG
*
6020258 TGTTCTTCATTTGTTCATCCCAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACCGAAC
1 TGTTCTTCATTTGTTCAT-CCAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACC-AAA
*
6020323 CCAAACCATTTCGTGTTTTTTCCAATCAAACACCCACAAATTCAT
64 CCAAACCATTTCGTGTTTTTT--TATCAAACA-CC-CAAATTCAT
6020368 CCAATGTTCA
Statistics
Matches: 201, Mismatches: 14, Indels: 23
0.84 0.06 0.10
Matches are distributed among these distances:
111 54 0.27
112 25 0.12
113 14 0.07
115 1 0.00
116 1 0.00
117 1 0.00
119 4 0.02
122 48 0.24
123 49 0.24
124 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.35
Consensus pattern (114 bp):
TGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACCAAACC
AAACCATTTCGTGTTTTTTTATCAAACACCCAAATTCATTGTCTTCTCG
Found at i:6020329 original size:122 final size:123
Alignment explanation
Indices: 6020134--6020367 Score: 373
Period size: 122 Copynumber: 1.9 Consensus size: 123
6020124 AATATTCTTC
*
6020134 CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTAATATTCAAAAACACCTAA
1 CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCATTTAATATTCAAAAACACCTAA
* * *
6020199 ACACAAACCATTTCGTGTTTTTTTCGATCAAACACCCA-AATTTCATTGGTGTTCATT
66 ACACAAACCATTTCGTGTTTTTTCCAATCAAACACCCACAAATTCATTGGTGTTCATT
* * *
6020256 CGTGTTCTTCATTTGTTCATCCCAGTTCTTCCCCAAAACCCTCATTTGATCTTCAAAAACACC-G
1 CGTGTTCTTCATTTGTTCAT-CCAGTTCTTCCCCAAAACCCTCATTTAATATTCAAAAACACCTA
*
6020320 AACCCAAACCATTTCGTGTTTTTTCCAATCAAACACCCACAAATTCAT
65 AACACAAACCATTTCGTGTTTTTTCCAATCAAACACCCACAAATTCAT
6020368 CCAATGTTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
122 56 0.55
123 46 0.45
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (123 bp):
CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCATTTAATATTCAAAAACACCTAA
ACACAAACCATTTCGTGTTTTTTCCAATCAAACACCCACAAATTCATTGGTGTTCATT
Found at i:6023140 original size:23 final size:23
Alignment explanation
Indices: 6023105--6023182 Score: 111
Period size: 23 Copynumber: 3.3 Consensus size: 23
6023095 CCTTATGGAC
* * *
6023105 ATTATTATATGGCACTACAGTGCA
1 ATTA-TATGTGGCACTTCGGTGCA
*
6023129 ATTCTATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTTCGGTGCA
6023152 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTTCGGTGCA
6023175 ATTATATG
1 ATTATATG
6023183 AGCCGTGGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 46 0.94
24 3 0.06
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.36
Consensus pattern (23 bp):
ATTATATGTGGCACTTCGGTGCA
Found at i:6027824 original size:19 final size:19
Alignment explanation
Indices: 6027800--6027847 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
6027790 TTGAAGGTGT
6027800 ATCGATGCACAGGTAGTGC
1 ATCGATGCACAGGTAGTGC
6027819 ATCGATGCACAGGTAGTGC
1 ATCGATGCACAGGTAGTGC
6027838 ATCGATGCAC
1 ATCGATGCAC
6027848 TCTTTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (19 bp):
ATCGATGCACAGGTAGTGC
Found at i:6028557 original size:23 final size:23
Alignment explanation
Indices: 6028481--6028558 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
6028471 CCTTATGGAC
*
6028481 ATTATTATATGGCACTACGGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * * *
6028505 ATTCTACGCGGCACTCCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
6028528 ATTATATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
6028551 ATTATATG
1 ATTATATG
6028559 AGCTGTGGTG
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 42 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:6030794 original size:20 final size:20
Alignment explanation
Indices: 6030760--6030805 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
6030750 ATTCTATTTT
* *
6030760 ATATTGTTTGCTTCTGTTTG
1 ATATTGCTTGCTTCTGCTTG
*
6030780 ATATTGCTTGTTTCTGCTTG
1 ATATTGCTTGCTTCTGCTTG
6030800 ATATTG
1 ATATTG
6030806 TAAGGGTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.13, C:0.11, G:0.20, T:0.57
Consensus pattern (20 bp):
ATATTGCTTGCTTCTGCTTG
Found at i:6043483 original size:20 final size:21
Alignment explanation
Indices: 6043453--6043494 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
6043443 AAATTTGAGA
6043453 TAAATTGAATAAAAAATAAAT
1 TAAATTGAATAAAAAATAAAT
* *
6043474 TAAATT-AATACAAATTAAAT
1 TAAATTGAATAAAAAATAAAT
6043494 T
1 T
6043495 TAATGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAATTGAATAAAAAATAAAT
Found at i:6049299 original size:2 final size:2
Alignment explanation
Indices: 6049287--6049318 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
6049277 GTCCTTTTTA
*
6049287 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6049319 TTTTCATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6049830 original size:8 final size:8
Alignment explanation
Indices: 6049814--6049866 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
6049804 TCACTACGTT
6049814 TTTTATTC
1 TTTTATTC
*
6049822 TTTTGTTC
1 TTTTATTC
*
6049830 TTTTTTTTC
1 -TTTTATTC
*
6049839 TTTTATTA
1 TTTTATTC
*
6049847 TTTTATTG
1 TTTTATTC
*
6049855 TTTTATTA
1 TTTTATTC
6049863 TTTT
1 TTTT
6049867 CTTTCGATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
8 31 0.82
9 7 0.18
ACGTcount: A:0.11, C:0.06, G:0.04, T:0.79
Consensus pattern (8 bp):
TTTTATTC
Found at i:6049921 original size:23 final size:22
Alignment explanation
Indices: 6049895--6049953 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 22
6049885 GAATATATTT
6049895 TTTATTTTATTT-TTCTTTTTTGA
1 TTTATTTT-TTTATTCTTTTTT-A
*
6049918 TTTATCTTTTTTATTGTTTTTTA
1 TTTAT-TTTTTTATTCTTTTTTA
*
6049941 TATATTTTCTTTA
1 TTTATTTT-TTTA
6049954 ATTTATTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
22 3 0.10
23 17 0.55
24 11 0.35
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.76
Consensus pattern (22 bp):
TTTATTTTTTTATTCTTTTTTA
Found at i:6049925 original size:14 final size:13
Alignment explanation
Indices: 6049899--6049932 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
6049889 ATATTTTTTA
*
6049899 TTTTATTTTTCTT
1 TTTTATTTATCTT
6049912 TTTTGATTTATCTT
1 TTTT-ATTTATCTT
6049926 TTTTATT
1 TTTTATT
6049933 GTTTTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.79
Consensus pattern (13 bp):
TTTTATTTATCTT
Found at i:6061432 original size:106 final size:106
Alignment explanation
Indices: 6061008--6061962 Score: 1495
Period size: 106 Copynumber: 9.0 Consensus size: 106
6060998 GGAGGATATC
* * * * * *
6061008 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
6061073 AATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
6061114 ACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
6061178 AATTTCAGAGCTAATTTTAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
6061219 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAC-AACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
6061283 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
6061324 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
6061389 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6061430 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
6061495 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
6061536 ACTCTAGACAATGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
6061601 AATTTCAGAGCCAATTTCAACTTCACAGTGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
6061642 ACTCCAGACGACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
6061707 AA-TTCAAGAGCCAATTTCAACATCACAGCGAAGGATATTGG
66 AATTTC-AGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
6061748 ACTCAAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGTTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
6061813 AATTTCAGAACCAATCTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
6061854 ACTCCAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
6061919 AGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
6061960 ACT
1 ACT
6061963 TGGAAGGGGC
Statistics
Matches: 787, Mismatches: 58, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
105 203 0.26
106 581 0.74
107 3 0.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:6064067 original size:2 final size:2
Alignment explanation
Indices: 6064060--6064105 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
6064050 GCATTTCATA
6064060 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6064102 -T AT A
1 AT AT A
6064106 CTATTATGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6064110 original size:8 final size:7
Alignment explanation
Indices: 6064060--6064112 Score: 56
Period size: 8 Copynumber: 7.3 Consensus size: 7
6064050 GCATTTCATA
6064060 ATATA-T
1 ATATATT
6064066 ATATA-T
1 ATATATT
6064072 ATATATAT
1 ATATAT-T
6064080 ATATATAT
1 ATATAT-T
6064088 ATATATAT
1 ATATAT-T
6064096 ATATATT
1 ATATATT
6064103 ATACTATT
1 ATA-TATT
6064111 AT
1 AT
6064113 GCAGGTTAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 11 0.25
7 4 0.09
8 29 0.66
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (7 bp):
ATATATT
Found at i:6064263 original size:2 final size:2
Alignment explanation
Indices: 6064256--6064293 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6064246 GCATTTCATA
6064256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6064294 TATGCATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6064445 original size:36 final size:35
Alignment explanation
Indices: 6064378--6064481 Score: 93
Period size: 36 Copynumber: 2.8 Consensus size: 35
6064368 TTCCTTTTAT
* * *
6064378 TATTTTATTATTTTCTTTTGA-TTTACCTTTTTGAATA
1 TATTTT-TTATTTTATTTT-ATTTTTCTTTTTTG-ATA
*
6064415 TATTTTTTATTTTATTTTATTTTTCTTTTTTGATT
1 TATTTTTTATTTTATTTTATTTTTCTTTTTTGATA
*
6064450 TATCTTTTTATTGTTTTTTATATCTTTTCTTT
1 TAT-TTTTTATT-TTATTT-TAT-TTTTCTTT
6064482 AATTTATTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
35 6 0.11
36 29 0.51
37 11 0.19
38 3 0.05
39 8 0.14
ACGTcount: A:0.16, C:0.07, G:0.04, T:0.73
Consensus pattern (35 bp):
TATTTTTTATTTTATTTTATTTTTCTTTTTTGATA
Found at i:6064504 original size:3 final size:3
Alignment explanation
Indices: 6064496--6064524 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6064486 TATTTAATAT
6064496 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6064525 TTAACATTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6086877 original size:16 final size:17
Alignment explanation
Indices: 6086853--6086885 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
6086843 TCTCTTTAAA
*
6086853 GTTTTGGAT-AAAATGG
1 GTTTCGGATCAAAATGG
6086869 GTTTCGGATCAAAATGG
1 GTTTCGGATCAAAATGG
6086886 TGTAGCTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.33
Consensus pattern (17 bp):
GTTTCGGATCAAAATGG
Found at i:6091719 original size:2 final size:2
Alignment explanation
Indices: 6091712--6091744 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6091702 AGGTCACTTT
6091712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6091745 TTTTTATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6096742 original size:61 final size:62
Alignment explanation
Indices: 6096639--6096766 Score: 204
Period size: 61 Copynumber: 2.1 Consensus size: 62
6096629 ATTATCCAAG
*
6096639 AAGCAGTCAAAACCTGCTACAAAGAACAACTACATCATCAACAAAAGAAAACTACAGCCCCC
1 AAGCAGTCAAAACCTGCTACAAAGAACAACTACATCACCAACAAAAGAAAACTACAGCCCCC
* * * *
6096701 AAGCAGT-TAAACCTGCTACAAAGAACAACTATATCGCCAACAAATGAAAACTACAGCCCCC
1 AAGCAGTCAAAACCTGCTACAAAGAACAACTACATCACCAACAAAAGAAAACTACAGCCCCC
6096762 AAGCA
1 AAGCA
6096767 AGACAAAGAC
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
61 54 0.89
62 7 0.11
ACGTcount: A:0.47, C:0.30, G:0.11, T:0.12
Consensus pattern (62 bp):
AAGCAGTCAAAACCTGCTACAAAGAACAACTACATCACCAACAAAAGAAAACTACAGCCCCC
Found at i:6113308 original size:225 final size:225
Alignment explanation
Indices: 6112916--6113365 Score: 616
Period size: 225 Copynumber: 2.0 Consensus size: 225
6112906 CATATCTTGC
*
6112916 ATCAAAATCAAACCCCAATCTTTCAGGATATACCACACCATAACTATTCCGTTCATATTTTCGGA
1 ATCAAAATCAAACCCCAATCTTTCAGGATATACCACACCATAACGATTCCGTTCATATTTTCGGA
** * * *
6112981 CCAATTCATTTAAATTTCTGTCGGAAACCTCGGAGTATCGATTCCCATTGGGAATTGTAGAGGGC
66 CCAAACCATTTAAATTTCTATCGGAAACCTCGGAATATCGATTCCCATTGGGAATGGTAGAGGGC
* * * *
6113046 AGCCCATCATGCAGTGAGATGTGATTCACAATATGATTCCTCTGAACATAGTTGAAATCACAAGT
131 AACCCAACATGCAGTGAGATGTGATCCACAATATGATTCCTCTGAACACAGTTGAAATCACAAGT
*
6113111 TGGTTGCAGCTGCATTGGCATTGGAATGGT
196 TGGCTGCAGCTGCATTGGCATTGGAATGGT
* * *
6113141 ATCAAAATCATACCCCAATCTTTCAGGATATGCCACACCATAACGATTCCGTTCATATTTTCGTA
1 ATCAAAATCAAACCCCAATCTTTCAGGATATACCACACCATAACGATTCCGTTCATATTTTCGGA
* * * * * *
6113206 TCAAACCATTTAAGTTTCTATC-TAAGACCTCGGAATATTGATTCCTATT-GGAGGTGGTAGAGG
66 CCAAACCATTTAAATTTCTATCGGAA-ACCTCGGAATATCGATTCCCATTGGGA-ATGGTAGAGG
* * * ** *
6113269 GCAACTCAACATGCAGTGGGATGTGATCCACAGTATGATTCCTCTGAGGACAGTTGAAATCAGAA
129 GCAACCCAACATGCAGTGAGATGTGATCCACAATATGATTCCTCTGAACACAGTTGAAATCACAA
* *
6113334 GTTGGCTGCGGCTGCATTGGCATTTGAATGGT
194 GTTGGCTGCAGCTGCATTGGCATTGGAATGGT
6113366 TTGAAAGAGC
Statistics
Matches: 195, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
224 5 0.03
225 190 0.97
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (225 bp):
ATCAAAATCAAACCCCAATCTTTCAGGATATACCACACCATAACGATTCCGTTCATATTTTCGGA
CCAAACCATTTAAATTTCTATCGGAAACCTCGGAATATCGATTCCCATTGGGAATGGTAGAGGGC
AACCCAACATGCAGTGAGATGTGATCCACAATATGATTCCTCTGAACACAGTTGAAATCACAAGT
TGGCTGCAGCTGCATTGGCATTGGAATGGT
Found at i:6119182 original size:19 final size:20
Alignment explanation
Indices: 6119153--6119190 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
6119143 ATAAATTTAT
6119153 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
6119173 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
6119191 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:6119233 original size:63 final size:63
Alignment explanation
Indices: 6119158--6119296 Score: 172
Period size: 63 Copynumber: 2.2 Consensus size: 63
6119148 TTTATTGAAG
* * * *
6119158 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATAAGAAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
* * ** **
6119221 GTGCATCGATGCATAAGGAGTGCATCGATGTATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCATAAGAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
6119284 GTGCATCGATGCA
1 GTGCATCGATGCA
6119297 CGCCTCCATT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 61 0.94
64 4 0.06
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (63 bp):
GTGCATCGATGCATAAGAAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:6120636 original size:18 final size:18
Alignment explanation
Indices: 6120613--6120648 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6120603 AGGAATGATA
6120613 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6120631 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6120649 ATATGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:6120658 original size:121 final size:121
Alignment explanation
Indices: 6120510--6120752 Score: 459
Period size: 121 Copynumber: 2.0 Consensus size: 121
6120500 CGAGGGTCTA
6120510 TGTGGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
*
6120575 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTAGGGACAT
*
6120631 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
*
6120696 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTAGGGACAT
6120752 T
1 T
6120753 ATTATATGGC
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 119 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (121 bp):
TGTGGTCCTTCGGGACATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTAGGGACAT
Found at i:6120709 original size:59 final size:59
Alignment explanation
Indices: 6120525--6120715 Score: 146
Period size: 59 Copynumber: 3.2 Consensus size: 59
6120515 TCCTTCGGGA
6120525 CATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 CATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
* * * * *
6120584 CATATGTATATGATTCTTAAGGAATGATATGTG--GTCCT--TCG-G-GACAT--TGTGGTCCTT
1 CATA--TATAT-ATTCTT-TGGAA-CATGTGTGAAGT-CTGGT-GAGACACATACT-TGATCC--
**
6120641 CGGG
56 CTAG
*
6120645 ACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 -CATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
*
6120705 CATATGTATAT
1 CATATATATAT
6120716 GATTCTTAAG
Statistics
Matches: 96, Mismatches: 17, Indels: 38
0.64 0.11 0.25
Matches are distributed among these distances:
57 6 0.06
58 7 0.07
59 27 0.28
60 12 0.12
61 13 0.14
62 18 0.19
63 7 0.07
64 6 0.06
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.35
Consensus pattern (59 bp):
CATATATATATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
Found at i:6120827 original size:23 final size:23
Alignment explanation
Indices: 6120759--6120819 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
6120749 CATTATTATA
*
6120759 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTATG
*
6120782 CGGCACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTATG
*
6120805 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
6120820 TTTATATGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTATG
Found at i:6124653 original size:19 final size:20
Alignment explanation
Indices: 6124624--6124661 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
6124614 AGAAATTTGT
6124624 TGAAGGTGCATCGATGCATA
1 TGAAGGTGCATCGATGCATA
6124644 TGAA-GTGCATCGATGCAT
1 TGAAGGTGCATCGATGCAT
6124662 TAATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (20 bp):
TGAAGGTGCATCGATGCATA
Found at i:6124696 original size:63 final size:62
Alignment explanation
Indices: 6124629--6124787 Score: 203
Period size: 63 Copynumber: 2.5 Consensus size: 62
6124619 TTTGTTGAAG
* * * *
6124629 GTGCATCGATGCATATGAAGTGCATCGATGCATTAAT-TTAAATACAAACATCGAATGTCGTCA
1 GTGCATCGATGCATA-GGAGTGCATCGATGCATTAATAATAAA-ACAAACATCGAATGCCCTCA
** **
6124692 GTGCATCGATGCATAAGGAGTGCATCGATGCATTTCTAATAAAATGAACATCGAATGCCCTCA
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
6124755 GTGCATCGATGCATCAGGAGTGCATCGATGCAT
1 GTGCATCGATGCAT-AGGAGTGCATCGATGCAT
6124788 GCCTCCATTA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
63 80 0.94
64 5 0.06
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (62 bp):
GTGCATCGATGCATAGGAGTGCATCGATGCATTAATAATAAAACAAACATCGAATGCCCTCA
Found at i:6126123 original size:18 final size:18
Alignment explanation
Indices: 6126100--6126135 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6126090 AGGAATGATA
6126100 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6126118 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6126136 ATATGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:6126137 original size:62 final size:62
Alignment explanation
Indices: 6126071--6126258 Score: 146
Period size: 62 Copynumber: 3.1 Consensus size: 62
6126061 TGATCCCTAG
6126071 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
* * ** * *
6126133 CATA--TATGT-ATTCTT-TGGAACATG-TATGAAGT-CTGGT-GAGACACATACT-TGATCC--
1 CATATGTATATGATTCTTAAGG-A-ATGATATGTGGTCCT--TCG-G-GACAT--TGTGGTCCTT
**
6126188 CTAG-
58 CGGGA
*
6126192 TATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
1 CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
6126254 CATAT
1 CATAT
6126259 ATGTATTCTT
Statistics
Matches: 89, Mismatches: 18, Indels: 38
0.61 0.12 0.26
Matches are distributed among these distances:
58 5 0.06
59 22 0.25
60 15 0.17
61 15 0.17
62 27 0.30
63 5 0.06
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (62 bp):
CATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACATTGTGGTCCTTCGGGA
Found at i:6126155 original size:121 final size:121
Alignment explanation
Indices: 6125997--6126360 Score: 692
Period size: 121 Copynumber: 3.0 Consensus size: 121
6125987 CGAGGGTCTA
6125997 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
6126062 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
*
6126118 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
*
6126183 GATCCCTAGTATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
6126239 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
1 TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
**
6126304 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTATGGACAT
66 GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
6126360 T
1 T
6126361 ATTATATGGC
Statistics
Matches: 237, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 237 1.00
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (121 bp):
TGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTT
GATCCCTAGCATATGTATATGATTCTTAAGGAATGATATGTGGTCCTTCGGGACAT
Found at i:6126244 original size:18 final size:18
Alignment explanation
Indices: 6126221--6126256 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6126211 AGGAATGATA
6126221 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6126239 TGTGGTCCTTCGGGACAT
1 TGTGGTCCTTCGGGACAT
6126257 ATATGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (18 bp):
TGTGGTCCTTCGGGACAT
Found at i:6126317 original size:59 final size:59
Alignment explanation
Indices: 6126012--6126317 Score: 140
Period size: 59 Copynumber: 5.1 Consensus size: 59
6126002 TCCTTCGGGA
6126012 CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
* * * * * *
6126071 CATATGTATATGATTCTTAAGGAATGATATGTG--GTCCT--TCG-G-GACAT--TGTGGTCCTT
1 CATA--TATGT-ATTCTT-TGGAA-CATGTGTGAAGT-CTGGT-GAGACACATACT-TGATCC--
**
6126128 CGGG
56 CTAG
*
6126132 ACATATATGTATTCTTTGGAACATGTATGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 -CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
* * * * * * *
6126192 TATATGTATATGATTCTTAAGGAATGATATGTG--GTCCT--TCG-G-GACAT--TGTGGTCCTT
1 CATA--TATGT-ATTCTT-TGGAA-CATGTGTGAAGT-CTGGT-GAGACACATACT-TGATCC--
**
6126249 CGGG
56 CTAG
6126253 ACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
1 -CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
6126313 CATAT
1 CATAT
6126318 GTATATGATT
Statistics
Matches: 173, Mismatches: 36, Indels: 76
0.61 0.13 0.27
Matches are distributed among these distances:
57 11 0.06
58 14 0.08
59 40 0.23
60 24 0.14
61 24 0.14
62 35 0.20
63 14 0.08
64 11 0.06
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (59 bp):
CATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGATCCCTAG
Found at i:6126397 original size:23 final size:23
Alignment explanation
Indices: 6126366--6126427 Score: 97
Period size: 23 Copynumber: 2.7 Consensus size: 23
6126356 ACATTATTAT
6126366 ATGGCACTACGGTGCAATTCTAC
1 ATGGCACTACGGTGCAATTCTAC
* *
6126389 GTGGCACTACGGTGCAATTCTAT
1 ATGGCACTACGGTGCAATTCTAC
*
6126412 ATGGCACTTCGGTGCA
1 ATGGCACTACGGTGCA
6126428 TTTATATGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (23 bp):
ATGGCACTACGGTGCAATTCTAC
Found at i:6130127 original size:17 final size:17
Alignment explanation
Indices: 6130107--6130141 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6130097 ATATATGTGC
6130107 ATTAA-AAATAATGATAA
1 ATTAATAAATAA-GATAA
6130124 ATTAATAAATAAGATAA
1 ATTAATAAATAAGATAA
6130141 A
1 A
6130142 AGTGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
ATTAATAAATAAGATAA
Found at i:6131417 original size:14 final size:14
Alignment explanation
Indices: 6131398--6131426 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6131388 TTCTAATATC
6131398 TAATATATTAACCA
1 TAATATATTAACCA
6131412 TAATATATTAACCA
1 TAATATATTAACCA
6131426 T
1 T
6131427 GTTAATGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (14 bp):
TAATATATTAACCA
Found at i:6142375 original size:28 final size:26
Alignment explanation
Indices: 6142330--6142385 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 26
6142320 CTCAATTATG
*
6142330 TTTTTTATCTTTAGGTATTTAAAGTT
1 TTTTTTATCTTTAAGTATTTAAAGTT
*
6142356 TTTTTTATCAATTTAAGTATTTAACGTT
1 TTTTTTATC--TTTAAGTATTTAAAGTT
6142384 TT
1 TT
6142386 CGACGTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 9 0.35
28 17 0.65
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.61
Consensus pattern (26 bp):
TTTTTTATCTTTAAGTATTTAAAGTT
Found at i:6155519 original size:24 final size:24
Alignment explanation
Indices: 6155487--6155532 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
6155477 TATGGTTGGA
*
6155487 GAAGAAGAGGGACGAGGAAGCATC
1 GAAGAAGAGAGACGAGGAAGCATC
6155511 GAAGAAGAGAGACGAGGAAGCA
1 GAAGAAGAGAGACGAGGAAGCA
6155533 GTGAGGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.11, G:0.41, T:0.02
Consensus pattern (24 bp):
GAAGAAGAGAGACGAGGAAGCATC
Found at i:6156520 original size:23 final size:22
Alignment explanation
Indices: 6156476--6156520 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
6156466 AATGTCATGG
* *
6156476 GGGAACTGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
6156498 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
6156521 AGAAAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:6158096 original size:105 final size:104
Alignment explanation
Indices: 6157908--6158130 Score: 257
Period size: 105 Copynumber: 2.1 Consensus size: 104
6157898 GAGTCGAGGG
* *
6157908 TCTACGCGGTCCTTCGAGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGCGACACAT
1 TCTACGTGGTCCTTCGAGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACAT
* *
6157973 ATTTGGTCCTTAGCATATGTATATGATTCTTAAGGAATTT
66 ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAA-TT
* * * * * * * * * *
6158013 TCTACGTGGTCCTTCGGGACGTTTATGTATTCTTTGGAGCATGTATGAGGTCTTTTGAGACACTT
1 TCTACGTGGTCCTTCGAGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACAT
* * * *
6158078 ACTTGATCTTTGGTATATGTATATGGTTCTTAAGGAATT
66 ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAATT
* *
6158117 TATATGTGGTCCTT
1 TCTACGTGGTCCTT
6158131 ATGGACAATC
Statistics
Matches: 98, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
104 14 0.14
105 84 0.86
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.39
Consensus pattern (104 bp):
TCTACGTGGTCCTTCGAGACATATAGGTATCCTATGGAACATCTATGAGGTCCTTTGAGACACAT
ACTTGATCCTTAGCATATGTATATGATTCTTAAGGAATT
Found at i:6158192 original size:23 final size:24
Alignment explanation
Indices: 6158147--6158192 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6158137 AATCTTATAT
*
6158147 GGCACTACGGTGCAAATTCTACGC
1 GGCACTACGGTGCAAATTATACGC
*
6158171 GGCACTTCGGTGC-AATTATACG
1 GGCACTACGGTGCAAATTATACG
6158193 AGCTGTGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (24 bp):
GGCACTACGGTGCAAATTATACGC
Found at i:6164889 original size:2 final size:2
Alignment explanation
Indices: 6164880--6164914 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
6164870 TTTTGAAAAT
6164880 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6164915 GGTGGGGTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6165288 original size:103 final size:102
Alignment explanation
Indices: 6165062--6165366 Score: 499
Period size: 103 Copynumber: 3.0 Consensus size: 102
6165052 GACACATGAT
* *
6165062 CATCCATAATTAATCTTTCAGGTGCAATTAAAGTTGTTAA-AATTAATTTATAATTGTATAAAAA
1 CATCCCTAATTAATCTTTCAGGTACAATTAAAGTTG-TAATAATTAATTTATAATTGTATAAAAA
6165126 ATTAATTATTAATTATTCTTTTTTTAAAAA-TAATTTAC
65 ATTAATTATTAATTATTC-TTTTTTAAAAATTAATTTAC
6165164 CATCCCTAATTAATCTTTCAGGTACAATTAAAGTTGTAATAATTAATTTATAATTGTATAAAAAA
1 CATCCCTAATTAATCTTTCAGGTACAATTAAAGTTGTAATAATTAATTTATAATTGTAT-AAAAA
*
6165229 ATTAATTATTAATTATTCTTTTTAAAAAATTAATTTAC
65 ATTAATTATTAATTATTCTTTTTTAAAAATTAATTTAC
* **
6165267 CATCCCTAATTAATATTTCAGGTACAATTAAAGTTGTAATCGTTAATTTATAATTGTATAAAAAA
1 CATCCCTAATTAATCTTTCAGGTACAATTAAAGTTGTAATAATTAATTTATAATTGTATAAAAAA
6165332 -TAATTATTAATTATTCTTATTTTAAAAATTAATTT
66 TTAATTATTAATTATTCTT-TTTTAAAAATTAATTT
6165367 TCGAATCGAG
Statistics
Matches: 192, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
101 21 0.11
102 84 0.44
103 87 0.45
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.45
Consensus pattern (102 bp):
CATCCCTAATTAATCTTTCAGGTACAATTAAAGTTGTAATAATTAATTTATAATTGTATAAAAAA
TTAATTATTAATTATTCTTTTTTAAAAATTAATTTAC
Found at i:6167773 original size:15 final size:13
Alignment explanation
Indices: 6167752--6167792 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
6167742 TTTTACCGGA
6167752 TAAAAAACCGGTT
1 TAAAAAACCGGTT
6167765 TGAAAAAAACCGG-T
1 T--AAAAAACCGGTT
6167779 TAAAAAACCGGTT
1 TAAAAAACCGGTT
6167792 T
1 T
6167793 TTATCCGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 3 0.12
14 2 0.08
15 10 0.40
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (13 bp):
TAAAAAACCGGTT
Found at i:6167783 original size:12 final size:12
Alignment explanation
Indices: 6167746--6167791 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
6167736 CCGGTTTTTT
*
6167746 ACCGGATAAAAA
1 ACCGGTTAAAAA
6167758 ACCGGTTTGAAAAAA
1 ACCGG-TT--AAAAA
6167773 ACCGGTTAAAAA
1 ACCGGTTAAAAA
6167785 ACCGGTT
1 ACCGGTT
6167792 TTTATCCGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 17 0.57
13 1 0.03
14 2 0.07
15 10 0.33
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (12 bp):
ACCGGTTAAAAA
Found at i:6170120 original size:21 final size:21
Alignment explanation
Indices: 6170096--6170135 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
6170086 TTTATTTTAT
6170096 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
6170117 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
6170136 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Done.