Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 41
Found at i:6786501 original size:19 final size:19
Alignment explanation
Indices: 6786477--6786568 Score: 69
Period size: 19 Copynumber: 5.4 Consensus size: 19
6786467 GATTCCCTCG
6786477 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
6786496 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
*
6786510 TTGCAATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
**
6786529 TTGCGA--TT-ACCTCG--
1 TTGCGATTTTCATTTCGCA
*
6786543 TTGCGATTTTTATTTCGCA
1 TTGCGATTTTCATTTCGCA
6786562 TTGCGAT
1 TTGCGAT
6786569 AGTAATTTCC
Statistics
Matches: 55, Mismatches: 8, Indels: 20
0.66 0.10 0.24
Matches are distributed among these distances:
14 11 0.20
16 13 0.24
17 13 0.24
19 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:6786542 original size:66 final size:66
Alignment explanation
Indices: 6786442--6786568 Score: 209
Period size: 66 Copynumber: 1.9 Consensus size: 66
6786432 ACTAAATTCG
* * * *
6786442 CGTTGCAATTTTCATTTCTCTTTGGGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGATTCTC
1 CGTTGCAATTTTCATTTCGCATTGCGATTACCTCGTTGCGATTTTCATTTCGCATTGCGATTCTC
6786507 T
66 T
*
6786508 CGTTGCAATTTTCATTTCGCATTGCGATTACCTCGTTGCGATTTTTATTTCGCATTGCGAT
1 CGTTGCAATTTTCATTTCGCATTGCGATTACCTCGTTGCGATTTTCATTTCGCATTGCGAT
6786569 AGTAATTTCC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (66 bp):
CGTTGCAATTTTCATTTCGCATTGCGATTACCTCGTTGCGATTTTCATTTCGCATTGCGATTCTC
T
Found at i:6788902 original size:12 final size:12
Alignment explanation
Indices: 6788885--6788914 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
6788875 TCTTCGGGGA
6788885 CTTTTTCTTCTT
1 CTTTTTCTTCTT
6788897 CTTTTTCTTCTT
1 CTTTTTCTTCTT
6788909 CTTTTT
1 CTTTTT
6788915 ATATGAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:6789116 original size:24 final size:24
Alignment explanation
Indices: 6789082--6789134 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
6789072 CTGAAACATC
*
6789082 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
6789106 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
6789130 ATCAA
1 ATCAA
6789135 TTTCGAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:6789937 original size:20 final size:21
Alignment explanation
Indices: 6789912--6789963 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
6789902 TTTTCCCAAT
*
6789912 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
6789932 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
6789953 TCGCAATGCGA
1 TCGCAATGCGA
6789964 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:6789977 original size:20 final size:20
Alignment explanation
Indices: 6789952--6790061 Score: 105
Period size: 20 Copynumber: 5.5 Consensus size: 20
6789942 AATTTGGAAA
*
6789952 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
6789972 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
6789993 ATCGCAACGCGATACTAACT
1 ATCGCAACGCGATACTGACT
* *
6790013 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* * *
6790033 TTCGCAACGAGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
6790053 TTCGCAACG
1 ATCGCAACG
6790062 AGATTCTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.03
20 59 0.76
21 15 0.19
22 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:6790078 original size:40 final size:40
Alignment explanation
Indices: 6789948--6790079 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
6789938 TGCGAATTTG
* * **
6789948 GAAAATCGCAATGCGATACTGACTATCGCAACGCGATAAT
1 GAAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCT
* *
6789988 ACAAAATCGCAACGCGATACTAACTTTCGCAACGCGATTCT
1 -GAAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCT
*** * * *
6790029 GACTTTCGCAACGAGATTCTGACTTTCGCAACGAGATTCT
1 GAAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCT
6790069 GAAAATCGCAA
1 GAAAATCGCAA
6790080 TCATCTTCAA
Statistics
Matches: 74, Mismatches: 17, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
40 40 0.54
41 34 0.46
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (40 bp):
GAAAATCGCAACGCGATACTGACTTTCGCAACGCGATTCT
Found at i:6790079 original size:20 final size:20
Alignment explanation
Indices: 6789994--6790070 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
6789984 TAATACAAAA
* * *
6789994 TCGCAACGCGATACTAACTT
1 TCGCAACGAGATTCTGACTT
*
6790014 TCGCAACGCGATTCTGACTT
1 TCGCAACGAGATTCTGACTT
6790034 TCGCAACGAGATTCTGACTT
1 TCGCAACGAGATTCTGACTT
6790054 TCGCAACGAGATTCTGA
1 TCGCAACGAGATTCTGA
6790071 AAATCGCAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (20 bp):
TCGCAACGAGATTCTGACTT
Found at i:6790318 original size:20 final size:20
Alignment explanation
Indices: 6790293--6790388 Score: 165
Period size: 20 Copynumber: 4.8 Consensus size: 20
6790283 CAACGGGGAA
*
6790293 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGGCT
6790313 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
6790333 ATCGCAACGCGAAAATTGCT
1 ATCGCAACGCGAAAATGGCT
6790353 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
*
6790373 ATCGCAACGAGAAAAT
1 ATCGCAACGCGAAAAT
6790389 CGCAATGCGA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.16
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:6792076 original size:21 final size:21
Alignment explanation
Indices: 6792047--6792107 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
6792037 TCTTGAAGGG
*
6792047 GGGGACTCTTGAGGGATGATA
1 GGGGACTCTTGAGGGATGAGA
* **
6792068 GGGGCCTCTTGAACGATTG-GA
1 GGGGACTCTTGAGGGA-TGAGA
6792089 GGGGACTCTTGAGGGATGA
1 GGGGACTCTTGAGGGATGA
6792108 CAGGTGAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 2 0.06
21 27 0.87
22 2 0.06
ACGTcount: A:0.21, C:0.13, G:0.43, T:0.23
Consensus pattern (21 bp):
GGGGACTCTTGAGGGATGAGA
Found at i:6792497 original size:20 final size:20
Alignment explanation
Indices: 6792454--6792542 Score: 97
Period size: 20 Copynumber: 4.4 Consensus size: 20
6792444 TAGTTTACTT
* * * *
6792454 TCGCAACACGAAACTTACTT
1 TCGCAACGCGAAAATGACTA
*
6792474 TCGCAATGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
6792494 TCGCAACGCGGAAATGACTA
1 TCGCAACGCGAAAATGACTA
**
6792514 TCGCAACGCGGAAAATGAAAA
1 TCGCAACGC-GAAAATGACTA
6792535 TCGCAACG
1 TCGCAACG
6792543 ACAAAATCGC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
20 42 0.72
21 16 0.28
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:6792550 original size:14 final size:14
Alignment explanation
Indices: 6792531--6792589 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
6792521 GCGGAAAATG
6792531 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
6792545 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
*
6792564 AAAATCGCAACGGC
1 AAAATCGCAACGAC
6792578 AAAATCGCAACG
1 AAAATCGCAACG
6792590 CGAAACACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 22 0.59
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.27
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:6792565 original size:33 final size:33
Alignment explanation
Indices: 6792513--6792594 Score: 128
Period size: 33 Copynumber: 2.4 Consensus size: 33
6792503 GGAAATGACT
6792513 ATCGCAACGCGGAAAATGAAAATCGCAACGACAAA
1 ATCGCAACGC-G-AAATGAAAATCGCAACGACAAA
* *
6792548 ATCGCAATGCGAAATGAAAATCGCAACGGCAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
6792581 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
6792595 CACAAATCGC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
33 34 0.77
34 1 0.02
35 9 0.20
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:6792602 original size:33 final size:33
Alignment explanation
Indices: 6792513--6792605 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
6792503 GGAAATGACT
*
6792513 ATCGCAACGCGGAAAATGAAAATCGCAACGACAAA
1 ATCGCAACGC-G-AAATCAAAATCGCAACGACAAA
* * *
6792548 ATCGCAATGCGAAATGAAAATCGCAACGGCAAA
1 ATCGCAACGCGAAATCAAAATCGCAACGACAAA
6792581 ATCGCAACGCGAAA-CACAAATCGCA
1 ATCGCAACGCGAAATCA-AAATCGCA
6792606 TTGCGATTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
32 1 0.02
33 42 0.79
34 1 0.02
35 9 0.17
ACGTcount: A:0.46, C:0.25, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATCAAAATCGCAACGACAAA
Found at i:6792623 original size:19 final size:19
Alignment explanation
Indices: 6792601--6792664 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
6792591 GAAACACAAA
6792601 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
6792620 TCGCATTGCGA-TTT--TG
1 TCGCATTGCGATTTTCATT
*
6792636 TCG--TTACGATTTTCATT
1 TCGCATTGCGATTTTCATT
6792653 TCGCATTGCGAT
1 TCGCATTGCGAT
6792665 AGCCATTTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
14 5 0.14
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 17 0.47
ACGTcount: A:0.16, C:0.20, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:6792683 original size:20 final size:19
Alignment explanation
Indices: 6792649--6792703 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
6792639 TTACGATTTT
*
6792649 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
6792668 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
6792688 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
6792704 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:6793267 original size:18 final size:19
Alignment explanation
Indices: 6793244--6793291 Score: 75
Period size: 18 Copynumber: 2.7 Consensus size: 19
6793234 CGGGTCGATC
6793244 AGGTGATGA-CTCTGGGTG
1 AGGTGATGAGCTCTGGGTG
6793262 AGGTGAT-AGCTCTGGGTG
1 AGGTGATGAGCTCTGGGTG
6793280 AGGTGATG-GCTC
1 AGGTGATGAGCTC
6793292 CAGAAGTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.04
18 27 0.96
ACGTcount: A:0.17, C:0.12, G:0.44, T:0.27
Consensus pattern (19 bp):
AGGTGATGAGCTCTGGGTG
Found at i:6794659 original size:20 final size:20
Alignment explanation
Indices: 6794612--6794669 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
6794602 ATAGTTTCTA
* *
6794612 AAAATGAAAATCGCAACACG
1 AAAATGACAATCGCAACGCG
6794632 AAAATGACAATCGCAACGCG
1 AAAATGACAATCGCAACGCG
** *
6794652 AATTTGACTATCGCAACG
1 AAAATGACAATCGCAACG
6794670 AGAGAATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.45, C:0.22, G:0.17, T:0.16
Consensus pattern (20 bp):
AAAATGACAATCGCAACGCG
Found at i:6794959 original size:22 final size:22
Alignment explanation
Indices: 6794932--6794975 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6794922 GATGGAGATA
6794932 GATGGATTTCGCCGGAGATGGG
1 GATGGATTTCGCCGGAGATGGG
* *
6794954 GATGGATTTCGTCGGGGATGGG
1 GATGGATTTCGCCGGAGATGGG
6794976 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.48, T:0.25
Consensus pattern (22 bp):
GATGGATTTCGCCGGAGATGGG
Found at i:6795255 original size:20 final size:20
Alignment explanation
Indices: 6795162--6795254 Score: 132
Period size: 20 Copynumber: 4.7 Consensus size: 20
6795152 GATTATGTAT
*
6795162 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* * * *
6795182 TATTGCGTTGAGAAATTAAG
1 TATCGCGTTGCGAAAGTCAG
6795202 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
6795222 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
6795242 TATCGCGTTGCGA
1 TATCGCGTTGCGA
6795255 TTTTCCAAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:6795273 original size:21 final size:21
Alignment explanation
Indices: 6795244--6795316 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
6795234 ATAGTCAGTA
*
6795244 TCGCGTTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
6795265 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* * **
6795286 TCGCATTGTGA-TTTACTTAT
1 TCGCATTGCGATTTTCCAAAT
6795306 TCGCATTGCGA
1 TCGCATTGCGA
6795317 ATTGGGAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:6795358 original size:21 final size:22
Alignment explanation
Indices: 6795306--6795358 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
6795296 ATTTACTTAT
6795306 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
6795327 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
6795348 TCGCATTGCGA
1 TCGCATTGCGA
6795359 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:6798691 original size:71 final size:73
Alignment explanation
Indices: 6798573--6798706 Score: 202
Period size: 71 Copynumber: 1.9 Consensus size: 73
6798563 AAGTCTCCTC
* * *
6798573 ATAGAACCATTTCCAGTAAAATTATTTGTTTACTTTTCAACAATCAATCTCTAAGCCAAATAGCT
1 ATAGAACCATTTCCAGTAAAATTATTTGTTCACCTTTCAACAATCAATCTCTAAACCAAATAGCT
6798638 ATTACTTA
66 ATTACTTA
*
6798646 ATAGAACCATTT-CAGGTAATA-T-TTTGTTCACCTTTCAACAATCAATCTCTAAACCAAATAG
1 ATAGAACCATTTCCA-GTAAAATTATTTGTTCACCTTTCAACAATCAATCTCTAAACCAAATAG
6798707 TTATCATAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
71 36 0.64
72 3 0.05
73 17 0.30
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.35
Consensus pattern (73 bp):
ATAGAACCATTTCCAGTAAAATTATTTGTTCACCTTTCAACAATCAATCTCTAAACCAAATAGCT
ATTACTTA
Found at i:6802072 original size:20 final size:20
Alignment explanation
Indices: 6802047--6802084 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6802037 TATTATGTTC
6802047 GTTTATGTT-CGTTCGTTTGT
1 GTTTAT-TTACGTTCGTTTGT
6802067 GTTTATTTACGTTCGTTT
1 GTTTATTTACGTTCGTTT
6802085 ATCATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.08, C:0.11, G:0.21, T:0.61
Consensus pattern (20 bp):
GTTTATTTACGTTCGTTTGT
Found at i:6804176 original size:17 final size:17
Alignment explanation
Indices: 6804151--6804196 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
6804141 TTGTCATTTG
6804151 ATATTATATAATACATA
1 ATATTATATAATACATA
* * *
6804168 ATATAATATAATATATT
1 ATATTATATAATACATA
6804185 ATATTATATAAT
1 ATATTATATAAT
6804197 TGTATTACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATTATATAATACATA
Found at i:6805572 original size:20 final size:19
Alignment explanation
Indices: 6805547--6805597 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
6805537 GCTGCTGGAA
*
6805547 AACCGGTTTGACCAGTTTTG
1 AACCGGTTTGACC-GGTTTG
6805567 AACCGGTTTGACCGGTTTG
1 AACCGGTTTGACCGGTTTG
*
6805586 -ACCGGTCTGACC
1 AACCGGTTTGACC
6805598 CGACCCGTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.38
19 5 0.17
20 13 0.45
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.29
Consensus pattern (19 bp):
AACCGGTTTGACCGGTTTG
Found at i:6805580 original size:9 final size:9
Alignment explanation
Indices: 6805548--6805597 Score: 64
Period size: 9 Copynumber: 5.3 Consensus size: 9
6805538 CTGCTGGAAA
6805548 ACCGGTTTG
1 ACCGGTTTG
*
6805557 ACCAGTTTTG
1 ACC-GGTTTG
6805567 AACCGGTTTG
1 -ACCGGTTTG
6805577 ACCGGTTTG
1 ACCGGTTTG
*
6805586 ACCGGTCTG
1 ACCGGTTTG
6805595 ACC
1 ACC
6805598 CGACCCGTCT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 23 0.64
10 10 0.28
11 3 0.08
ACGTcount: A:0.16, C:0.26, G:0.28, T:0.30
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:6805607 original size:14 final size:14
Alignment explanation
Indices: 6805585--6805617 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
6805575 TGACCGGTTT
*
6805585 GACCGGTCTGACCC
1 GACCCGTCTGACCC
6805599 GACCCGTCTGACCC
1 GACCCGTCTGACCC
6805613 GACCC
1 GACCC
6805618 AACTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.48, G:0.24, T:0.12
Consensus pattern (14 bp):
GACCCGTCTGACCC
Found at i:6805634 original size:22 final size:22
Alignment explanation
Indices: 6805608--6805660 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
6805598 CGACCCGTCT
*
6805608 GACCCGACCCAACTGTTGACCC
1 GACCCGACCCAACCGTTGACCC
*
6805630 GACCCGACCCGACCGTTGACCC
1 GACCCGACCCAACCGTTGACCC
6805652 GACCCGACC
1 GACCCGACC
6805661 GTTGACCGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.21, C:0.49, G:0.21, T:0.09
Consensus pattern (22 bp):
GACCCGACCCAACCGTTGACCC
Found at i:6805650 original size:17 final size:17
Alignment explanation
Indices: 6805630--6805667 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
6805620 CTGTTGACCC
6805630 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
6805647 GACCCGACCCGACCGTT
1 GACCCGACCCGACCGTT
6805664 GACC
1 GACC
6805668 GTTGACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.18, C:0.47, G:0.24, T:0.11
Consensus pattern (17 bp):
GACCCGACCCGACCGTT
Found at i:6812884 original size:14 final size:14
Alignment explanation
Indices: 6812862--6812895 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
6812852 GAACCGGTTT
*
6812862 GACCGGTCTGACCC
1 GACCCGTCTGACCC
6812876 GACCCGTCTGACCC
1 GACCCGTCTGACCC
6812890 GACCCG
1 GACCCG
6812896 ACTGTTGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.15, C:0.47, G:0.26, T:0.12
Consensus pattern (14 bp):
GACCCGTCTGACCC
Found at i:6812906 original size:17 final size:17
Alignment explanation
Indices: 6812871--6812939 Score: 111
Period size: 17 Copynumber: 3.9 Consensus size: 17
6812861 TGACCGGTCT
6812871 GACCCGACCCGTCTGACCC
1 GACCCGA-CCGT-TGACCC
*
6812890 GACCCGACTGTTGACCC
1 GACCCGACCGTTGACCC
6812907 GACCCGACCGTTGACCC
1 GACCCGACCGTTGACCC
6812924 GACCCGACCGTTGACC
1 GACCCGACCGTTGACC
6812940 ATTGATCGTT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 38 0.79
18 3 0.06
19 7 0.15
ACGTcount: A:0.17, C:0.46, G:0.23, T:0.13
Consensus pattern (17 bp):
GACCCGACCGTTGACCC
Found at i:6815260 original size:28 final size:30
Alignment explanation
Indices: 6815229--6815291 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
6815219 TTTTTCTTTG
6815229 TTTTAATCTT-GTTTTA-ATTTAGTTTCAT
1 TTTTAATCTTAGTTTTATATTTAGTTTCAT
* * *
6815257 TTTTAATCTTATTTTTATTTTTATTTTCAT
1 TTTTAATCTTAGTTTTATATTTAGTTTCAT
6815287 TTTTA
1 TTTTA
6815292 TATTTATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 10 0.33
29 5 0.17
30 15 0.50
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (30 bp):
TTTTAATCTTAGTTTTATATTTAGTTTCAT
Found at i:6815276 original size:6 final size:6
Alignment explanation
Indices: 6815255--6815304 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
6815245 ATTTAGTTTC
* * *
6815255 ATTTTT AATCTT ATTTTT ATTTTT ATTTTC ATTTTT ATATTTAT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT AT-TTT-T ATTTTT
6815305 TCTTTTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
6 27 0.75
7 6 0.17
8 3 0.08
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:6815278 original size:18 final size:17
Alignment explanation
Indices: 6815240--6815302 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 17
6815230 TTTAATCTTG
* *
6815240 TTTTAATTTAGTTTCAT
1 TTTTAATTTATTTTTAT
6815257 TTTTAATCTTATTTTTAT
1 TTTTAAT-TTATTTTTAT
*
6815275 TTTTATTTTCATTTTTAT
1 TTTTAATTT-ATTTTTAT
*
6815293 ATTTATATTT
1 TTTTA-ATTT
6815303 TTTCTTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
17 9 0.24
18 26 0.68
19 3 0.08
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (17 bp):
TTTTAATTTATTTTTAT
Found at i:6816399 original size:23 final size:19
Alignment explanation
Indices: 6816369--6816420 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 19
6816359 TCTTTCTACT
*
6816369 TTTTTATTTTTTCTTTCATCA
1 TTTTTATTTTAT-TTT-ATCA
6816390 TTTATTTATTTTATTTTATCA
1 -TT-TTTATTTTATTTTATCA
6816411 TTTTTATTTT
1 TTTTTATTTT
6816421 GCTAACTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.29
20 2 0.07
21 4 0.14
22 5 0.18
23 9 0.32
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTATTTTATTTTATCA
Found at i:6816401 original size:21 final size:19
Alignment explanation
Indices: 6816377--6816420 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
6816367 CTTTTTTATT
*
6816377 TTTTCTTTCATCATTTATTTA
1 TTTTATTTCATCA-TT-TTTA
*
6816398 TTTTATTTTATCATTTTTA
1 TTTTATTTCATCATTTTTA
6816417 TTTT
1 TTTT
6816421 GCTAACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.38
20 2 0.10
21 11 0.52
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTTATTTCATCATTTTTA
Found at i:6819473 original size:95 final size:95
Alignment explanation
Indices: 6819309--6819548 Score: 281
Period size: 95 Copynumber: 2.7 Consensus size: 95
6819299 ATATTATTTA
* *
6819309 TATACAATAAAGCTTGAGTTGTCTCTCTAGAGCAATTGGTTAAACGCCCCAGCTTTATGGATAAT
1 TATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCAGCTTTATGGATAAG
* *
6819374 ATTCAGCTAGCCTGATAAAGGTGATTATAC
66 ATTCAGCTAACCTGAAAAAGGTGATTATAC
* * **
6819404 TATACAATAAAGCTTGAGTTGTCCCTCTA-AGGTAATTGGTTAAATGCCCTGGCTTTATGGATAA
1 TATACAATAAAGCTTGAGTTGTCCCTCTAGA-GCAATTGGTTAAACGCCCCAGCTTTATGGATAA
6819468 GATTCAGCTAACCTGAAAAA---GA-TAT--
65 GATTCAGCTAACCTGAAAAAGGTGATTATAC
* **
6819493 T-TAC-AT--A--TTGAGTTGTTCCTCTAGAGCAATTGGTTAAACGCCCTGGCTTTATGGAT
1 TATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCAGCTTTATGGAT
6819549 TCAACTAGCC
Statistics
Matches: 132, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
83 44 0.33
84 1 0.01
85 1 0.01
87 2 0.02
88 3 0.02
89 1 0.01
91 3 0.02
92 2 0.02
94 1 0.01
95 74 0.56
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (95 bp):
TATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCAGCTTTATGGATAAG
ATTCAGCTAACCTGAAAAAGGTGATTATAC
Found at i:6820854 original size:100 final size:100
Alignment explanation
Indices: 6820729--6821105 Score: 348
Period size: 100 Copynumber: 3.8 Consensus size: 100
6820719 ACGGTTTCCC
* * *
6820729 TTAAAACAAATTTTGTCTCTATTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTGTTTTCC
1 TTAAAACAAATTTTGTCTCTATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
6820794 TTGAAACAAATTTCGTCTCCCTTGAGACATTTCTT
66 TTGAAACAAATTTCGTCTCCCTTGAGACATTTCTT
*
6820829 TTAAAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
1 TTAAAACAAATTTTGTCTCTATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
* * * **
6820894 TTGAAACAAATTTTGTCTCTCTTGAGACGGTTTCCC
66 TTGAAACAAATTTCGTCTCCCTTGAGAC-ATTTCTT
* * * *
6820930 TTGAAACAAA------ATCT-TTGA-ATCTATTTTCCTTGAAACAAATTTCATCTCCCTTGAGA-
1 TTAAAACAAATTTTGTCTCTATTGAGA-CAATTTCCCTTGAAACAAA----ATCT---TTGA-AT
** * * * *
6820986 C-AGTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCTC
57 CTA-TTTCCCTTGAAACAAATTTCGTCTCCCTTGAGACA-TTTCTT
* * * *
6821031 TT--AA-AATTTTTGTATCTCTTGAGACATTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
1 TTAAAACAAATTTTGTCTCTATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
6821093 TTGAAACAAATTT
66 TTGAAACAAATTT
6821106 TGAGACAGTT
Statistics
Matches: 230, Mismatches: 25, Indels: 46
0.76 0.08 0.15
Matches are distributed among these distances:
93 1 0.00
94 21 0.09
95 3 0.01
97 1 0.00
98 27 0.12
99 3 0.01
100 88 0.38
101 60 0.26
102 1 0.00
104 4 0.02
105 20 0.09
106 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.41
Consensus pattern (100 bp):
TTAAAACAAATTTTGTCTCTATTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCC
TTGAAACAAATTTCGTCTCCCTTGAGACATTTCTT
Found at i:6820890 original size:29 final size:29
Alignment explanation
Indices: 6820858--6820968 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 29
6820848 TCTTGAGACA
6820858 ATTTCCCTTGAAACAAAATCTTTGAATCT
1 ATTTCCCTTGAAACAAAATCTTTGAATCT
* *
6820887 ATTTCCCTTGAAACAAATTTTGTCTCTCTTGAGA-CG
1 ATTTCCCTTGAAACAAA------ATCT-TTGA-ATCT
*
6820923 GTTTCCCTTGAAACAAAATCTTTGAATCT
1 ATTTCCCTTGAAACAAAATCTTTGAATCT
*
6820952 ATTTTCCTTGAAACAAA
1 ATTTCCCTTGAAACAAA
6820969 TTTCATCTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
28 1 0.02
29 37 0.56
30 3 0.05
35 3 0.05
36 21 0.32
37 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.38
Consensus pattern (29 bp):
ATTTCCCTTGAAACAAAATCTTTGAATCT
Found at i:6820908 original size:65 final size:65
Alignment explanation
Indices: 6820832--6821195 Score: 328
Period size: 65 Copynumber: 5.7 Consensus size: 65
6820822 ATTTCTTTTA
*
6820832 AAACAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
* *
6820897 AAACAAATTTTGTCTCTCTTGAGACGGTTTCCCTTGAAACAAAATCTTTGAATCTATTTTCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
** * ** * *
6820962 AAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTAAAACAAATTTTGTCTCTCTTGAGA-C-AT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA------ATCT-TTGA-ATCTA-
*
6821025 TTTCTCTT-
57 TTTCCCTTG
* * *
6821033 -AA-AATTTTTGTATCTCTTGAGACATTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
* * * * * *
6821096 AAACAAA-------T-T-TTGAGACAGTTTCCCTTGAAACAAAATATTTTAATATGTTTTCCTTT
1 AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
* *
6821152 AAACAAATTTCGTCTCT-TTCGAGACAGTTTCTCTTGAAA-AAAAT
1 AAACAAATTTTGTCTCTCTT-GAGACAGTTTCCCTTGAAACAAAAT
6821196 TTGTCTCCCT
Statistics
Matches: 243, Mismatches: 33, Indels: 47
0.75 0.10 0.15
Matches are distributed among these distances:
56 47 0.19
57 1 0.00
58 1 0.00
61 1 0.00
62 12 0.05
63 5 0.02
64 10 0.04
65 118 0.49
69 30 0.12
70 2 0.01
71 4 0.02
72 11 0.05
73 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (65 bp):
AAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTG
Found at i:6821090 original size:29 final size:28
Alignment explanation
Indices: 6821058--6821158 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 28
6821048 CTTGAGACAT
6821058 TTTCCCTTGAAACAAAATCTTTGAATCTA
1 TTTCCCTTGAAACAAAAT-TTTGAATCTA
6821087 TTTCCCTTGAAAC-AAATTTTGAGA-C-A
1 TTTCCCTTGAAACAAAATTTTGA-ATCTA
* * *
6821113 GTTTCCCTTGAAACAAAATATTTTAATATG
1 -TTTCCCTTGAAACAAAAT-TTTGAATCTA
* *
6821143 TTTTCCTTTAAACAAA
1 TTTCCCTTGAAACAAA
6821159 TTTCGTCTCT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
26 1 0.02
27 19 0.31
28 10 0.16
29 31 0.51
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.39
Consensus pattern (28 bp):
TTTCCCTTGAAACAAAATTTTGAATCTA
Found at i:6821091 original size:199 final size:192
Alignment explanation
Indices: 6820789--6821227 Score: 561
Period size: 190 Copynumber: 2.3 Consensus size: 192
6820779 TTGAATCTGT
* * *
6820789 TTTC-CTTG-AAACAAATTTCGTCTCCCTTGAGACATTTCTTTTAAAACAAATTTTGTCTCTCTT
1 TTTCTCTTGAAAACAAATTTTGTCTCCCTTGAGACATTTCTCTT-AAACAAATTTTGTATCTCTT
6820852 GAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAATTTTGTCTCTCTT
65 GAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAA-------T-T-TT
* * *
6820917 GAGACGGTTTCCCTTGAAACAAAATCTTTGAATCTATTTTCCTTGAAACAAATTTCATCTCCCTT
121 GAGACAGTTTCCCTTGAAACAAAATATTTGAATATATTTTCCTTGAAACAAATTTCATCT-CCTT
6820982 -GAGACAG
185 CGAGACAG
* * *
6820989 TTTCT-TTTAAAACAAATTTTGTCTCTCTTGAGACATTTTCTCTT-AA-AATTTTTGTATCTCTT
1 TTTCTCTTGAAAACAAATTTTGTCTCCCTTGAGACA-TTTCTCTTAAACAAATTTTGTATCTCTT
*
6821051 GAGACATTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAATTTTGAGACAGTT
65 GAGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAATTTTGAGACAGTT
* * * * *
6821116 TCCCTTGAAACAAAATATTTTAATATGTTTTCCTTTAAACAAATTTCGTCTCTTTCGAGACAG
130 TCCCTTGAAACAAAATATTTGAATATATTTTCCTTGAAACAAATTTCATCTCCTTCGAGACAG
6821179 TTTCTCTTGAAAA-AAA-TTTGTCTCCCTTGAGACAATTTCTCTTGAAACA
1 TTTCTCTTGAAAACAAATTTTGTCTCCCTTGAGAC-ATTTCTCTT-AAACA
6821228 CTAACTCTTG
Statistics
Matches: 213, Mismatches: 17, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
189 27 0.13
190 71 0.33
191 9 0.04
192 2 0.01
199 65 0.31
200 8 0.04
201 24 0.11
202 7 0.03
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (192 bp):
TTTCTCTTGAAAACAAATTTTGTCTCCCTTGAGACATTTCTCTTAAACAAATTTTGTATCTCTTG
AGACAATTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAATTTTGAGACAGTTT
CCCTTGAAACAAAATATTTGAATATATTTTCCTTGAAACAAATTTCATCTCCTTCGAGACAG
Found at i:6821117 original size:27 final size:27
Alignment explanation
Indices: 6821044--6821129 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 27
6821034 AAATTTTTGT
6821044 ATCTCTTGAGACATTTTCCCTTGAAACAAA
1 ATCT-TTGAGACA-TTTCCCTTGAAAC-AA
6821074 ATCTTTGA-ATCTATTTCCCTTGAAACAA
1 ATCTTTGAGA-C-ATTTCCCTTGAAACAA
6821102 AT-TTTGAGACAGTTTCCCTTGAAACAA
1 ATCTTTGAGACA-TTTCCCTTGAAACAA
6821129 A
1 A
6821130 ATATTTTAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 6 0.12
29 18 0.35
30 5 0.10
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (27 bp):
ATCTTTGAGACATTTCCCTTGAAACAA
Found at i:6821156 original size:56 final size:56
Alignment explanation
Indices: 6821049--6821161 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
6821039 TTTGTATCTC
* * *
6821049 TTGAGACATTTTCCCTTGAAACAAAATCTTTGAATCTATTTCCCTTGAAACAAATT
1 TTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATATTTCCCTTGAAACAAATT
* * * *
6821105 TTGAGACAGTTTCCCTTGAAACAAAATATTTTAATATGTTTTCCTTTAAACAAATT
1 TTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATATTTCCCTTGAAACAAATT
6821161 T
1 T
6821162 CGTCTCTTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.40
Consensus pattern (56 bp):
TTGAGACAGTTTCCCTTGAAACAAAATATTTGAATATATTTCCCTTGAAACAAATT
Found at i:6823116 original size:14 final size:14
Alignment explanation
Indices: 6823081--6823121 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
6823071 ATATATATTA
6823081 TTTTC-TTTATTTT
1 TTTTCTTTTATTTT
6823094 TTTTCTTTT-TTTT
1 TTTTCTTTTATTTT
*
6823107 TTCTTGTTTTATTTT
1 TT-TTCTTTTATTTT
6823122 AGTTTCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 11 0.46
14 9 0.38
15 4 0.17
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTCTTTTATTTT
Found at i:6823149 original size:6 final size:6
Alignment explanation
Indices: 6823113--6823170 Score: 55
Period size: 6 Copynumber: 9.7 Consensus size: 6
6823103 TTTTTTCTTG
* * * * *
6823113 TTTTA- TTTTAG TTTCAT TTTTAA TATTAT TTTTAT TTTTAT TTTCAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
6823160 TTTTAT ATTTT
1 TTTTAT -TTTT
6823171 TCTTTGTCAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 5 0.12
6 33 0.79
7 4 0.10
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:6823162 original size:11 final size:12
Alignment explanation
Indices: 6823078--6823165 Score: 54
Period size: 12 Copynumber: 7.3 Consensus size: 12
6823068 GTTATATATA
*
6823078 TTATTTTCTTTAT
1 TTATTTTCATT-T
*
6823091 TTTTTTTC-TTT
1 TTATTTTCATTT
* *
6823102 TTTTTTTCTTGTT
1 TTATTTTCAT-TT
*
6823115 TTATTTT-AGTT
1 TTATTTTCATTT
* * * *
6823126 TCATTTTTAATA
1 TTATTTTCATTT
*
6823138 TTATTTTTATTT
1 TTATTTTCATTT
6823150 TTATTTTCATTT
1 TTATTTTCATTT
6823162 TTAT
1 TTAT
6823166 ATTTTTCTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
11 17 0.28
12 29 0.48
13 15 0.25
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (12 bp):
TTATTTTCATTT
Found at i:6829688 original size:18 final size:19
Alignment explanation
Indices: 6829653--6829689 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
6829643 CACGGAATGT
6829653 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
6829673 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
6829690 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:6835220 original size:17 final size:17
Alignment explanation
Indices: 6835198--6835230 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6835188 GGGAAAGAGA
6835198 GAAGGGAATTAGGGATC
1 GAAGGGAATTAGGGATC
*
6835215 GAAGGGGATTAGGGAT
1 GAAGGGAATTAGGGAT
6835231 TGCAATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.45, T:0.18
Consensus pattern (17 bp):
GAAGGGAATTAGGGATC
Found at i:6837683 original size:2 final size:2
Alignment explanation
Indices: 6837676--6837700 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6837666 AGTTCCTGAT
6837676 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6837701 TAAGTGGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6838198 original size:9 final size:9
Alignment explanation
Indices: 6838186--6838210 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6838176 TTACCACCCG
6838186 CCGTCACCT
1 CCGTCACCT
6838195 CCGTCACCT
1 CCGTCACCT
6838204 CCGTCAC
1 CCGTCAC
6838211 AGCCACCGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.56, G:0.12, T:0.20
Consensus pattern (9 bp):
CCGTCACCT
Found at i:6840658 original size:21 final size:21
Alignment explanation
Indices: 6840634--6840676 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
6840624 ATGCCCTGAG
6840634 ATTGCTTATGGGTCTAAGCAA
1 ATTGCTTATGGGTCTAAGCAA
*
6840655 ATTGCTTCTGGGTCTAAGCAA
1 ATTGCTTATGGGTCTAAGCAA
6840676 A
1 A
6840677 GCTTTCCGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (21 bp):
ATTGCTTATGGGTCTAAGCAA
Found at i:6850352 original size:33 final size:31
Alignment explanation
Indices: 6850292--6850388 Score: 97
Period size: 33 Copynumber: 3.0 Consensus size: 31
6850282 AGTGATAAGG
*
6850292 TGATAATTAAAATTT-TTAAACAGTTATAAAA
1 TGATAATTAAAATTTATTAAATA-TTATAAAA
6850323 TGATAATTAAAATTTTATTAAATTATTATAAAA
1 TGATAATTAAAA-TTTATTAAA-TATTATAAAA
* * * * *
6850356 TAATCATTAAACTTTATCAAACTATTAAAAAA
1 TGATAATTAAAATTTATTAAA-TATTATAAAA
6850388 T
1 T
6850389 ACCTTTAGAC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
31 12 0.21
32 21 0.38
33 22 0.39
34 1 0.02
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (31 bp):
TGATAATTAAAATTTATTAAATATTATAAAA
Found at i:6850382 original size:32 final size:33
Alignment explanation
Indices: 6850294--6850389 Score: 92
Period size: 32 Copynumber: 3.0 Consensus size: 33
6850284 TGATAAGGTG
* *
6850294 ATAATTAAAA-TTT-TTAAAC-AGTTATAAAATG
1 ATAATTAAAACTTTATCAAACTA-TTATAAAATA
* * *
6850325 ATAATTAAAATTTTATTAAATTATTATAAAATA
1 ATAATTAAAACTTTATCAAACTATTATAAAATA
* *
6850358 ATCATT-AAACTTTATCAAACTATTAAAAAATA
1 ATAATTAAAACTTTATCAAACTATTATAAAATA
6850390 CCTTTAGACT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
31 10 0.18
32 25 0.45
33 19 0.35
34 1 0.02
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (33 bp):
ATAATTAAAACTTTATCAAACTATTATAAAATA
Found at i:6862621 original size:5 final size:5
Alignment explanation
Indices: 6862611--6862636 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6862601 TTTTTGTTTG
6862611 TCTTC TCTTC TCTTC TCTTC TCTTC T
1 TCTTC TCTTC TCTTC TCTTC TCTTC T
6862637 GGGTTCTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
TCTTC
Found at i:6863119 original size:18 final size:18
Alignment explanation
Indices: 6863098--6863132 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6863088 TTTGGCAGCA
*
6863098 TTTCTTATTTAAGAAAAG
1 TTTCTCATTTAAGAAAAG
6863116 TTTCTCATTTAAGAAAA
1 TTTCTCATTTAAGAAAA
6863133 TAAATTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (18 bp):
TTTCTCATTTAAGAAAAG
Found at i:6867734 original size:30 final size:30
Alignment explanation
Indices: 6867700--6867770 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
6867690 GAAATGTTTA
*
6867700 AAAGTTTACTGATAAAATCGTTACACATCT
1 AAAGTTTAATGATAAAATCGTTACACATCT
*
6867730 AAAGTTTAATGGTAAAATCGTTACACATCT
1 AAAGTTTAATGATAAAATCGTTACACATCT
*
6867760 AAAGTTCAATG
1 AAAGTTTAATG
6867771 TCTAAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (30 bp):
AAAGTTTAATGATAAAATCGTTACACATCT
Found at i:6869968 original size:20 final size:21
Alignment explanation
Indices: 6869943--6869984 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
6869933 GCATAGTATT
6869943 AAATAA-AAATA-ATAATAGAA
1 AAATAAGAAATATAT-ATAGAA
6869963 AAATAAGAAATATATATAGAA
1 AAATAAGAAATATATATAGAA
6869984 A
1 A
6869985 CGTATAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 12 0.60
22 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (21 bp):
AAATAAGAAATATATATAGAA
Found at i:6871695 original size:106 final size:107
Alignment explanation
Indices: 6871556--6871762 Score: 326
Period size: 106 Copynumber: 1.9 Consensus size: 107
6871546 GTTCTGGAAC
**
6871556 TGGGAAATTGTTTTGTTGACAGTCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGCTGTCTCGA
1 TGGGAAATTGTTTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGCTGTCTCGA
*
6871621 GTCCAATGCCCTTCAATGTGAAGTTGAAATTGGCTCCGAAAT
66 GTCCAATACCCTTCAATGTGAAGTTGAAATTGGCTCCGAAAT
* * *
6871663 TGGGAAATTG-TTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGA
1 TGGGAAATTGTTTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGCTGTCTCGA
* **
6871727 GTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
66 GTCCAATACCCTTCAATGTGAAGTTGAAATTGGCTC
6871763 TAGCTAAAAC
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
106 81 0.89
107 10 0.11
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (107 bp):
TGGGAAATTGTTTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGCTGTCTCGA
GTCCAATACCCTTCAATGTGAAGTTGAAATTGGCTCCGAAAT
Found at i:6872255 original size:67 final size:67
Alignment explanation
Indices: 6872076--6872268 Score: 233
Period size: 67 Copynumber: 2.8 Consensus size: 67
6872066 GTCTTAAAAA
* * * * * *
6872076 AGACAGAATTCGTTTCAAGGGAAACGATCTTAAAGATATATGTTGTTTCATGAGAAACGGCCTCA
1 AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGAT-TTTG-TGTTTCAAGAGAAACGGCCTCA
6872141 AGGG
64 AGGG
* * * * * *
6872145 AGACAAAATTTTGTTTTAAGGGAAATAAACTCAAAGATTTTGTGTTTCAAGAGAAACTGTCTTAA
1 AGACAAAA-TTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACGGCCTCAA
6872210 GGG
65 GGG
* *
6872213 AGACGAAATTTGTTTCAAGGGAAACAATCTCAAAGGTTTTGTGTTTCAAGAGAAAC
1 AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAAC
6872269 ATTTTCAAAG
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
67 44 0.42
68 29 0.27
69 10 0.09
70 23 0.22
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (67 bp):
AGACAAAATTTGTTTCAAGGGAAACAATCTCAAAGATTTTGTGTTTCAAGAGAAACGGCCTCAAG
GG
Found at i:6872329 original size:36 final size:34
Alignment explanation
Indices: 6872223--6872338 Score: 157
Period size: 34 Copynumber: 3.4 Consensus size: 34
6872213 AGACGAAATT
* *
6872223 TGTTTCAAGGGAAACAATCTCAAAGG---TTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTG
*
6872254 TGTTTCAAGAGAAACATTTTCAAAGGTTTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTG
*
6872288 TGTTTCAAGAGAAACAATTTCAAAGATTTCTTTTTG
1 TGTTTCAAGAGAAACAATTTCAAAG-GTT-TTTTTG
6872324 TGTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
6872339 TGTATCAAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
31 23 0.31
34 29 0.39
35 2 0.03
36 21 0.28
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (34 bp):
TGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTG
Found at i:6872436 original size:38 final size:36
Alignment explanation
Indices: 6872379--6872901 Score: 188
Period size: 37 Copynumber: 15.4 Consensus size: 36
6872369 CAAGGATTGA
*
6872379 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * *
6872416 TGTTTTAAGAAAAACATGTCTTAAGAGAGACAAAATT
1 TGTTTCAAGAGAAAC-TGTCTCAAGAGAGACAAAATT
*
6872453 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
6872489 TGTTT-AATGTA-AAACATAT-TC-A-A-AG----ATTT
1 TGTTTCAA-G-AGAAAC-TGTCTCAAGAGAGACAAAATT
* * *
6872518 TGTTTCAAGGGAAACTGTTTTC---AGAG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
* *
6872547 ATGTTTCAATAGAAACTATCTCAATG-GAGACAAAATT
1 -TGTTTCAAGAGAAACTGTCTCAA-GAGAGACAAAATT
* *
6872584 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
** * * * *
6872620 CATTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
* *
6872648 ATGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* *
6872686 TGTTTCAAGGGAAACTATCTCAAGAGAGAC--AATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* * * * *
6872720 TATTTCAAGGGAAA-TGCTTTC-A-A-TG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
*
6872748 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * * *
6872786 TGTTCCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGAGAAACTG-TCTCAAGAGAGACAAAATT
*
6872814 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* *
6872852 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
** *
6872888 CATTTCAAGGGAAA
1 TGTTTCAAGAGAAA
6872902 TGTTTTCAAT
Statistics
Matches: 366, Mismatches: 64, Indels: 113
0.67 0.12 0.21
Matches are distributed among these distances:
28 7 0.02
29 65 0.18
30 29 0.08
31 1 0.00
32 7 0.02
33 5 0.01
34 21 0.06
35 8 0.02
36 95 0.26
37 105 0.29
38 23 0.06
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:6872753 original size:100 final size:101
Alignment explanation
Indices: 6872520--6872799 Score: 449
Period size: 100 Copynumber: 2.8 Consensus size: 101
6872510 AAAGATTTTG
* * *
6872520 TTTCAAGGGAAACTGTTTTCAGA-GTTTATGTTTCAATAGAAACTATCTCAATGGAGACAAAA-T
1 TTTCAAGGGAAA-TGTTTTCA-ATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
6872583 TTGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
64 TTGTTTCAAGGGAAACTATCTCAAGAGAGAC-AAATTCA
*
6872622 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
*
6872687 GTTTCAAGGGAAACTATCTCAAGAGAGAC-AATTTA
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAATTCA
*
6872722 TTTCAAGGGAAATGCTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
*
6872787 GTTCCAAGGGAAA
66 GTTTCAAGGGAAA
6872800 TGTTTTCAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
100 81 0.48
101 43 0.26
102 44 0.26
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (101 bp):
TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGAGAGACAAATTCA
Found at i:6872817 original size:166 final size:166
Alignment explanation
Indices: 6872584--6872969 Score: 614
Period size: 166 Copynumber: 2.3 Consensus size: 166
6872574 AGACAAAATT
* * *
6872584 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCAT-TTCAAGGGAAATGTTTTCAATGTTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT-TTGTTCAAGGGAAATGTTTTCAATGTTT
*
6872648 ATGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
65 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
*
6872713 GAC-AATTTATTTCAAGGGAAATGCTTTCAATGTTTA
130 GACAAATTCATTTCAAGGGAAATGCTTTCAATGTTTA
*
6872749 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTCCAAGGGAAATGTTTTCAATGTTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGTT-CAAGGGAAATGTTTTCAATGTTT
6872814 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
65 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGA
*
6872879 GACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
130 GAC-AAATTCATTTCAAGGGAAATGCTTTCAATGTTTA
* * *
6872917 TGTTTAAAGAGAAACTGTCTCAAGTGAGACAAAACTTTCTGTTTCGAGGGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TTT-TG-TTCAAGGGAAA
6872970 CTATCTCAAG
Statistics
Matches: 204, Mismatches: 10, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
164 1 0.00
165 35 0.17
166 90 0.44
168 63 0.31
169 3 0.01
170 10 0.05
171 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.31
Consensus pattern (166 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAATTCATTTCAAGGGAAATGCTTTCAATGTTTA
Found at i:6872820 original size:66 final size:65
Alignment explanation
Indices: 6872686--6872865 Score: 276
Period size: 66 Copynumber: 2.8 Consensus size: 65
6872676 GACAAAATTT
* * *
6872686 TGTTTCAAGGGAAACTATCTCAAGAGAGAC--AATTTAT-TTCAAGGGAAATGCTTTCAATGTTT
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT-TGTTCAAGGGAAATGCTTTCAATGTTT
6872748 A
65 A
*
6872749 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTCCAAGGGAAATGTTTTCAATGTTT
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTT-CAAGGGAAATGCTTTCAATGTTT
6872814 A
65 A
6872815 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAA
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTG-TTCAAGGGAAA
6872866 CTATCTCAAG
Statistics
Matches: 108, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
63 27 0.25
64 1 0.01
65 7 0.06
66 71 0.66
67 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTCAAGGGAAATGCTTTCAATGTTTA
Found at i:6872927 original size:102 final size:105
Alignment explanation
Indices: 6872749--6872990 Score: 366
Period size: 102 Copynumber: 2.3 Consensus size: 105
6872739 TCAATGTTTA
* * * *
6872749 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTCCAAGGGAAATGTTTTCAATGTTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTATGTTCCAAGGGAAATGTTTTCAATGTTT
*
6872814 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTT-
66 ATGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
6872852 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCAT-TT-CAAGGGAAATGTTTTCAATGTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT-ATGTTCCAAGGGAAATGTTTTCAATGTT
*
6872915 TATGTTTAAAGAGAAACTGTCTCAAGTGAGACAAAACTTTC
65 TATGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
* * *
6872956 TGTTTCGAGGGAAACTATCTCAAGCGAGATAAAAT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAAT
6872991 CTTGTTTTAA
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
102 56 0.44
103 38 0.30
104 33 0.26
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (105 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTATGTTCCAAGGGAAATGTTTTCAATGTTT
ATGTTTAAAGAGAAACTGTCTCAAGGGAGACAAAACTTTC
Found at i:6874496 original size:183 final size:183
Alignment explanation
Indices: 6874188--6874537 Score: 603
Period size: 183 Copynumber: 1.9 Consensus size: 183
6874178 GGTTTAACTA
6874188 AAGGGTTCATCTCATCACAAAGTCTTTGGCATGACAAAAACAGTGGAGCAAACACCGAATTACCA
1 AAGGGTTCATCTCATCACAAAGTCTTTGGCATGACAAAAACAGTGGAGCAAACACCGAATTACCA
* **
6874253 AGTGTCCGAGCAATGTCATGGTTTGAATGTAATCTATTCATAAAGCCAAGGCTTTCGAGTTTCCT
66 AGTGTCCGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAAGGCTTTCGAGTTTCCT
6874318 CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
131 CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
* * * *
6874371 AAGGGTTCGTCTCATCCCAAAGTCTTTGGCCTGACAAAAGCAGTGGAGCAAACACCGAATTGA-C
1 AAGGGTTCATCTCATCACAAAGTCTTTGGCATGACAAAAACAGTGGAGCAAACACCGAATT-ACC
* *
6874435 AAGTGTCCGAGCAGTGTCATAGTTTGAACATAATCTATTCATAAAGCCAGGGCTTTCGAGTTTCC
65 AAGTGTCCGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAAGGCTTTCGAGTTTCC
6874500 TCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
130 TCTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTA
6874538 CGGATTTAAT
Statistics
Matches: 157, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
183 156 0.99
184 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (183 bp):
AAGGGTTCATCTCATCACAAAGTCTTTGGCATGACAAAAACAGTGGAGCAAACACCGAATTACCA
AGTGTCCGAGCAATGTCATAGTTTGAACATAATCTATTCATAAAGCCAAGGCTTTCGAGTTTCCT
CTATAACCAATTGCCTTAGTGGAATAGCTCAGCTTTAGAGGGACAAATCACTG
Found at i:6878519 original size:20 final size:21
Alignment explanation
Indices: 6878494--6878535 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
6878484 ACATAGTATT
6878494 AAATAA-AAATA-ATAATAGAA
1 AAATAAGAAATATAT-ATAGAA
6878514 AAATAAGAAATATATATAGAA
1 AAATAAGAAATATATATAGAA
6878535 A
1 A
6878536 CGTATAGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 12 0.60
22 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (21 bp):
AAATAAGAAATATATATAGAA
Found at i:6878717 original size:2 final size:2
Alignment explanation
Indices: 6878710--6878756 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
6878700 GTATACTTAA
6878710 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6878752 AT AT A
1 AT AT A
6878757 CTAATATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6882078 original size:13 final size:13
Alignment explanation
Indices: 6882060--6882084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6882050 TTCCTAAAGA
6882060 AAAATCAGCAATC
1 AAAATCAGCAATC
6882073 AAAATCAGCAAT
1 AAAATCAGCAAT
6882085 ATACTTCTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (13 bp):
AAAATCAGCAATC
Found at i:6886454 original size:122 final size:123
Alignment explanation
Indices: 6886135--6886488 Score: 481
Period size: 122 Copynumber: 2.9 Consensus size: 123
6886125 ATGACAATTC
* * *
6886135 ATCTCCTTCTGTGA-AGTAATC-TAGCAAAAAGTTGAACAAATTCTTCTCATTATGAA---CTTC
1 ATCTCCTTCTGTGATAG-AGTCATA-CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTC
* *
6886195 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCCTT-T-TGGAAATGCTGATGATGATAT
64 TTCTTCTTCAGATAAGTTCTTCTCATTATGAACT--TTCTATGGAAAAGCTGATGATGATAT
* *
6886255 ATCTCCTTCTGTGATAGAGTCATGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCCTCTT
1 ATCTCCTTCTGTGATAGAGTCATACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
* * * * *
6886320 CCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTATGGAAAAGTTGGTGTTGATCT
66 CTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTATGGAAAAGCTGATGATGATAT
* *
6886378 ATCTCTTTCTGTGATAGAGTCATAC-AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTT
1 ATCTCCTTCTGTGATAGAGTCATACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
*
6886442 CTTCTTCAGATAAGTTCTTCTCATTATGATCTTTCTATGGAAAAGCT
66 CTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTATGGAAAAGCT
6886489 AATCCATCGA
Statistics
Matches: 208, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
120 47 0.23
121 5 0.02
122 82 0.39
123 74 0.36
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (123 bp):
ATCTCCTTCTGTGATAGAGTCATACAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT
CTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTATGGAAAAGCTGATGATGATAT
Found at i:6886542 original size:112 final size:113
Alignment explanation
Indices: 6886403--6886936 Score: 650
Period size: 112 Copynumber: 4.7 Consensus size: 113
6886393 AGAGTCATAC
** * * *
6886403 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
6886467 ATGATCTTTCTA-TGGAAAAGCTAATCCATCGAGTGATGAATTAAAGC-T
66 ATGAAC--TCTACTGGAAATGCTGATCCATCGAATGATGAATTTAAGCGA
* * * * *
6886515 AAAGGTTGAACAAATTCTTCTTATTATGAACTTTTTCTTCATTCTTCAGATAAGTTCTTCTTATT
1 AAAGGTTGAACAAATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * **
6886580 ATGAACTCTAATTGGCACTGCTGATCCACCGAGTGATGAATTCGAGC-A
66 ATGAACTCT-ACTGGAAATGCTGATCCATCGAATGATGAATTTAAGCGA
*
6886628 AAAGGTTGAACAAATTCGTCTAATTATGAACTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
6886692 ATGAACTCTACCTGGCAATGTTGATCCATCGAATGATGAATTTAAGCGA
66 ATGAACTCTA-CTGGAAATGCTGATCCATCGAATGATGAATTTAAGCGA
* * *
6886741 AAAGTTTGAACAAGTTCTTCTAATTATGAACTTATTATTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAGGTTGAACAAATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* **
6886806 ATGAACTCTTCTGGAAATTTTGATCCAT-GAATGATGAATTTAAGCGA
66 ATGAACTCTACTGGAAATGCTGATCCATCGAATGATGAATTTAAGCGA
* * *
6886853 AAAGTTTGAACAAGTTTTTTCTAATTATGAA-TTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAGGTTGAACAA-ATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
6886917 TATGAACTCTTCTGGAAATG
65 TATGAACTCTACTGGAAATG
6886937 TTTTAAAAAA
Statistics
Matches: 377, Mismatches: 38, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
111 4 0.01
112 185 0.49
113 149 0.40
114 39 0.10
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (113 bp):
AAAGGTTGAACAAATTCTTCTAATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTACTGGAAATGCTGATCCATCGAATGATGAATTTAAGCGA
Found at i:6886893 original size:226 final size:222
Alignment explanation
Indices: 6886403--6886926 Score: 642
Period size: 226 Copynumber: 2.3 Consensus size: 222
6886393 AGAGTCATAC
* * *
6886403 AAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATAAGTTCTTCTCATT
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
6886467 ATGATCTTTCTATGGAAAAGCTAATCCATCGAGTGATGAATTAAAGCTAAAGGTTGAACAAATTC
65 ATGAAC--TCTATGGAAAAGCTAATCCATCGAATGATGAATTAAAGCAAAAGGTTGAACAAATTC
* * * * *
6886532 TTCTTATTATGAACTTTTTCTTCATTCTTCAGATAAGTTCTTCTTATTATGAACTCTAATTGGCA
128 TTCTAATTATGAACTTATTATTCATTCTTCAGATAAGTTCTTCTCATTATGAACTCT-ATTGGAA
* * *
6886597 CTGCTGATCCACCGAGTGATGAATTCGAGCA
192 ATGCTGATCCACCGAATGATGAATTCAAGCA
* *
6886628 AAAGGTTGAACAAATTCGTCTAATTATGAACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAAGGTTGAACAAGTTCTTCTAATTATGAACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * * * * * *
6886693 TGAACTCTACCTGGCAATGTTGATCCATCGAATGATGAATTTAAGCGAAAAGTTTGAACAAGTTC
66 TGAACTCTA--TGGAAAAGCTAATCCATCGAATGATGAATTAAAGC-AAAAGGTTGAACAAATTC
* *
6886758 TTCTAATTATGAACTTATTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCT-TCTGGAA
128 TTCTAATTATGAACTTATTATTCATTCTTCAGATAAGTTCTTCTCATTATGAACTCTAT-TGGAA
** * *
6886822 ATTTTGATCCA-TGAATGATGAATTTAAGCGA
192 ATGCTGATCCACCGAATGATGAATTCAAGC-A
* *
6886853 AAAGTTTGAACAAGTTTTTTCTAATTATGAA-TTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAGGTTGAACAAG-TTCTTCTAATTATGAACTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCAT
6886917 TATGAACTCT
64 TATGAACTCT
6886927 TCTGGAAATG
Statistics
Matches: 258, Mismatches: 33, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
223 4 0.02
224 20 0.08
225 114 0.44
226 120 0.47
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (222 bp):
AAAGGTTGAACAAGTTCTTCTAATTATGAACTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
TGAACTCTATGGAAAAGCTAATCCATCGAATGATGAATTAAAGCAAAAGGTTGAACAAATTCTTC
TAATTATGAACTTATTATTCATTCTTCAGATAAGTTCTTCTCATTATGAACTCTATTGGAAATGC
TGATCCACCGAATGATGAATTCAAGCA
Found at i:6887071 original size:76 final size:76
Alignment explanation
Indices: 6886954--6887126 Score: 283
Period size: 76 Copynumber: 2.3 Consensus size: 76
6886944 AAAACATTTC
* * * *
6886954 GCACTGTAGGGCTTACAGCTGACTCGAAGGTTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
1 GCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
6887019 GGAAACATCAT
66 GGAAACATCAT
* * *
6887030 GCACTGTAGGACTTATAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCTCGAAGGCTTTTT
1 GCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
6887095 GGAAACATCAT
66 GGAAACATCAT
6887106 GCACTGTAGGACTTACAGATG
1 GCACTGTAGGACTTACAGATG
6887127 TGGGAAATAG
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 89 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (76 bp):
GCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTT
GGAAACATCAT
Found at i:6887854 original size:22 final size:22
Alignment explanation
Indices: 6887803--6887854 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
6887793 AATAAAGCTT
**
6887803 TCATCTTCGAAAAGAGAATCTA
1 TCATCTTTAAAAAGAGAATCTA
*
6887825 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTAAAAAGAGAATCTA
6887847 TCATCTTT
1 TCATCTTT
6887855 GAAGAATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (22 bp):
TCATCTTTAAAAAGAGAATCTA
Found at i:6892913 original size:23 final size:23
Alignment explanation
Indices: 6892887--6892955 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
6892877 CACCATAGCT
*
6892887 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* *
6892910 CGTAGAATTGCACCGGAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCA
*
6892933 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
6892956 TATAATAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:6893142 original size:103 final size:103
Alignment explanation
Indices: 6892963--6893188 Score: 391
Period size: 103 Copynumber: 2.2 Consensus size: 103
6892953 CCATATAATA
* * *
6892963 ATGT-CCATAAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGT
1 ATGTCCCA-AAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGC
6893027 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
65 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
* *
6893066 ATGTCCCAAATGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGCG
1 ATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGCG
6893131 TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
66 TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
6893169 ATGTCCCAAAGGACCACATA
1 ATGTCCCAAAGGACCACATA
6893189 GACCCTCGAC
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
103 113 0.97
104 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.26
Consensus pattern (103 bp):
ATGTCCCAAAGGACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGCG
TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
Found at i:6898136 original size:23 final size:23
Alignment explanation
Indices: 6898110--6898178 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
6898100 CACCACAACT
* *
6898110 CGTATAATTGCACCGAAGTGCTA
1 CGTAGAATTGCACCGAAGTGCCA
* * *
6898133 CGTAGAATTGCATCGGAGTGCCG
1 CGTAGAATTGCACCGAAGTGCCA
*
6898156 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
6898179 TATAATAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:6898365 original size:103 final size:103
Alignment explanation
Indices: 6898198--6898411 Score: 383
Period size: 103 Copynumber: 2.1 Consensus size: 103
6898188 GTCCATAAGG
* *
6898198 ACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCAGACT
1 ACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACT
*
6898263 TCACACATGTTCCAAAGAATACATATATGTCCCGAAGA
66 TCACACAAGTTCCAAAGAATACATATATGTCCCGAAGA
*
6898301 ACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGACT
1 ACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACT
*
6898366 TCACACAAGTTCCAAAGAATACATATATGTCCCGAAGG
66 TCACACAAGTTCCAAAGAATACATATATGTCCCGAAGA
6898404 ACCACATA
1 ACCACATA
6898412 GACCCTCGAC
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 106 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (103 bp):
ACCACATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACT
TCACACAAGTTCCAAAGAATACATATATGTCCCGAAGA
Found at i:6900973 original size:18 final size:19
Alignment explanation
Indices: 6900950--6900990 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
6900940 ACTGCCAATT
6900950 TTTTTTTAT-CTTTTTTCC
1 TTTTTTTATCCTTTTTTCC
*
6900968 TTTTTTTCTCCTTTTTTCC
1 TTTTTTTATCCTTTTTTCC
6900987 TTTT
1 TTTT
6900991 GTTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTTATCCTTTTTTCC
Found at i:6900973 original size:19 final size:18
Alignment explanation
Indices: 6900949--6900995 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 18
6900939 GACTGCCAAT
*
6900949 TTTTTTTTATCTTTTTTCC
1 TTTTTTTT-CCTTTTTTCC
6900968 TTTTTTTCTCCTTTTTTCC
1 TTTTTTT-TCCTTTTTTCC
6900987 TTTTGTTTT
1 TTTT-TTTT
6900996 TTTTTCAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTTTCCTTTTTTCC
Found at i:6905805 original size:28 final size:27
Alignment explanation
Indices: 6905754--6905807 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
6905744 ATATTAATAA
*
6905754 AATAATATATATAAATACTATGAAAAT
1 AATAATATATATAAAAACTATGAAAAT
* *
6905781 AATAAGTATATATAAAAATTTTGAAAA
1 AATAA-TATATATAAAAACTATGAAAA
6905808 GAAAGAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (27 bp):
AATAATATATATAAAAACTATGAAAAT
Found at i:6907885 original size:14 final size:15
Alignment explanation
Indices: 6907861--6907895 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
6907851 TTTGTTATTA
6907861 AGTTTGAGCCAGTCT
1 AGTTTGAGCCAGTCT
*
6907876 -GTTTGGGCCAGTCT
1 AGTTTGAGCCAGTCT
6907890 AGTTTG
1 AGTTTG
6907896 TAATCGGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.14, C:0.17, G:0.31, T:0.37
Consensus pattern (15 bp):
AGTTTGAGCCAGTCT
Found at i:6907969 original size:3 final size:3
Alignment explanation
Indices: 6907956--6907988 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
6907946 TTTAATAAAT
6907956 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
6907989 ATGAAACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6908480 original size:15 final size:15
Alignment explanation
Indices: 6908456--6908489 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6908446 GACATTACCT
*
6908456 GCCCCGCATCCGCCC
1 GCCCCACATCCGCCC
6908471 GCCCCACATCCGCCC
1 GCCCCACATCCGCCC
6908486 GCCC
1 GCCC
6908490 AGCTAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.68, G:0.18, T:0.06
Consensus pattern (15 bp):
GCCCCACATCCGCCC
Found at i:6915737 original size:6 final size:6
Alignment explanation
Indices: 6915726--6915796 Score: 63
Period size: 6 Copynumber: 11.5 Consensus size: 6
6915716 AATAAAACTA
* * * * *
6915726 ATTAAT ATTAAT ACTAAT AATAAT GA-TAAT AATAAT AATAAT AATAAT
1 ATTAAT ATTAAT ATTAAT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT
6915774 ATTAAT AATTAAT ATTTAAT ATT
1 ATTAAT -ATTAAT A-TTAAT ATT
6915797 TTTGGCCTGG
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
5 1 0.02
6 44 0.76
7 13 0.22
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (6 bp):
ATTAAT
Found at i:6915748 original size:3 final size:3
Alignment explanation
Indices: 6915715--6915787 Score: 76
Period size: 3 Copynumber: 23.7 Consensus size: 3
6915705 CCAAAATATG
* * *
6915715 TAA TAA -AA CTAA TTAA TAT TAA TAC TAA TAA TAA TGA TAA TAA TAA
1 TAA TAA TAA -TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
6915761 TAA TAA TAA TAA TAT TAA TAA TTAA TA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TA
6915788 TTTAATATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.03
3 48 0.83
4 8 0.14
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:6916464 original size:35 final size:34
Alignment explanation
Indices: 6916353--6916477 Score: 118
Period size: 35 Copynumber: 3.8 Consensus size: 34
6916343 GACAAAATTT
*
6916353 GTTTCAAGGG-AATGACTCAAAGATG---GTTTC
1 GTTTCAAGGGAAACGACTCAAAGATGTTTGTTTC
* * **
6916383 GTTTCAAGAGAAACAAACTCAAAGA--TTTAATTC
1 GTTTCAAGGGAAAC-GACTCAAAGATGTTTGTTTC
* *
6916416 GTTTTAAGGGAAACGATCTCAAAGATGTTTGTTTT
1 GTTTCAAGGGAAACGA-CTCAAAGATGTTTGTTTC
6916451 GTTTCAAGGGAAACAGACTCAAAGATG
1 GTTTCAAGGGAAAC-GACTCAAAGATG
6916478 AGTTTTTCAC
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
30 9 0.12
31 2 0.03
32 10 0.14
33 23 0.31
35 28 0.38
36 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (34 bp):
GTTTCAAGGGAAACGACTCAAAGATGTTTGTTTC
Found at i:6916624 original size:32 final size:33
Alignment explanation
Indices: 6916568--6916651 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 33
6916558 GAAAATAAGA
** * *
6916568 TTTGTTTCAAGAGAAATGATCTCAAAGATG-GT
1 TTTGTTTCAAGAGAAACAAACTCAAAGACGAGT
*
6916600 TTTGTTTCAAGAGAAACAAACTCAAAGACGATT
1 TTTGTTTCAAGAGAAACAAACTCAAAGACGAGT
* *
6916633 TTTATTTCAAGTGAAACAA
1 TTTGTTTCAAGAGAAACAA
6916652 TTTCAGAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (33 bp):
TTTGTTTCAAGAGAAACAAACTCAAAGACGAGT
Found at i:6916898 original size:34 final size:34
Alignment explanation
Indices: 6916845--6916909 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
6916835 AAAGGAAAAA
6916845 TGTCTCAAGAGAGACAAAATTTATTTTAAGAAAT
1 TGTCTCAAGAGAGACAAAATTTATTTTAAGAAAT
* * *
6916879 TGTCTCAAGTGAGATAAAATTTGTTTTAAGA
1 TGTCTCAAGAGAGACAAAATTTATTTTAAGA
6916910 GAAAACACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (34 bp):
TGTCTCAAGAGAGACAAAATTTATTTTAAGAAAT
Found at i:6922803 original size:32 final size:32
Alignment explanation
Indices: 6922767--6922844 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
6922757 TACAATCAAG
* * *
6922767 AGAAATAAGTTAGTGTACATACACAAAAGGAA
1 AGAAATAAGTTAATGTACACAAACAAAAGGAA
*
6922799 AGAAATTAGTTAATGTACACAAACAAAAGGAA
1 AGAAATAAGTTAATGTACACAAACAAAAGGAA
6922831 AGAAATCAA-TTAAT
1 AGAAAT-AAGTTAAT
6922845 ACAGGTGAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 39 0.98
33 1 0.03
ACGTcount: A:0.55, C:0.09, G:0.15, T:0.21
Consensus pattern (32 bp):
AGAAATAAGTTAATGTACACAAACAAAAGGAA
Found at i:6926703 original size:3 final size:3
Alignment explanation
Indices: 6926676--6926739 Score: 67
Period size: 3 Copynumber: 20.7 Consensus size: 3
6926666 TGTAATTATG
* * *
6926676 TAA TAA -AA CTAA TTAA TAT TAA TAA TAA TAA TGA TGA TAA TAA TAA
1 TAA TAA TAA -TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6926722 TAA TAA TAA TAA TTAA TA
1 TAA TAA TAA TAA -TAA TA
6926740 TTTAATATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
2 2 0.04
3 43 0.81
4 8 0.15
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:6932393 original size:14 final size:14
Alignment explanation
Indices: 6932374--6932444 Score: 72
Period size: 15 Copynumber: 4.9 Consensus size: 14
6932364 CTAATTTTTC
6932374 ATTTTACTT-TTATT
1 ATTTTA-TTATTATT
6932388 ATTTTATTATTATT
1 ATTTTATTATTATT
*
6932402 ATTATTATTATTATAA
1 ATT-TTATTATTAT-T
* *
6932418 ATATTATTATTGTT
1 ATTTTATTATTATT
6932432 ATTATTATTATTA
1 ATT-TTATTATTA
6932445 AATAATACAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
13 2 0.04
14 16 0.34
15 27 0.57
16 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (14 bp):
ATTTTATTATTATT
Found at i:6932397 original size:3 final size:3
Alignment explanation
Indices: 6932383--6932444 Score: 90
Period size: 3 Copynumber: 21.0 Consensus size: 3
6932373 CATTTTACTT
* * *
6932383 TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TAA ATA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6932430 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
6932445 AATAATACAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6933970 original size:125 final size:131
Alignment explanation
Indices: 6933866--6934239 Score: 315
Period size: 135 Copynumber: 2.7 Consensus size: 131
6933856 TATTTTTATT
** * * * *
6933866 TATTTTTTAATATTGAAGAGAATAGCTGTCTTAAGGCACCTAGAAGCCCTTTTCTGATATTT-TC
1 TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCT-
6933930 AAATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAATGTTTTAGTTATT
65 AAATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAA----TTAGTTATT
6933995 TACTTA
126 TACTTA
*
6934001 TTTTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCTA
1 TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCTA
* * *
6934066 AATAAGTAAATATCTTACTTTTATAAATTATATGTATCAATCTATTTATTATTATTATTTTTAGA
66 AATAAATAAATATCTTA---TTAT--ATTA-A--AAT-AA---A--T-TT-TTATT-TTTTAAGA
* * *
6934131 AAAAT-GTTTTTATATTTA
114 AAATTAGTTATT-TACTTA
* *
6934149 T-TCATTTTTCAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTCC-TTTTCTGATATT
1 TAT--TTTTT-AATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAG-CCATTTTCTGATATT
* *
6934212 TCTAAATAAGTAAATATATTATATATAT
62 TCTAAATAAATAAATATCTTAT-TATAT
6934240 ATTAATATAT
Statistics
Matches: 199, Mismatches: 16, Indels: 37
0.79 0.06 0.15
Matches are distributed among these distances:
135 72 0.36
136 1 0.01
138 4 0.02
140 4 0.02
141 1 0.01
143 2 0.01
144 2 0.01
146 2 0.01
147 8 0.04
148 10 0.05
149 6 0.03
150 70 0.35
151 7 0.04
152 10 0.05
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (131 bp):
TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCTA
AATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAATTAGTTATTTACTT
A
Found at i:6941050 original size:93 final size:93
Alignment explanation
Indices: 6940890--6941459 Score: 937
Period size: 93 Copynumber: 6.1 Consensus size: 93
6940880 ACAAGTGTCG
*
6940890 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAATCTGGTTTGGTATG-AACCCTA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCC-A
*
6940954 AAAACTAATCATTGAATTTGGAAGATGAA
65 AAAACCAATCATTGAATTTGGAAGATGAA
6940983 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCAA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCAA
*
6941048 AAACCAATCATTGAATTTAGAAGATGAA
66 AAACCAATCATTGAATTTGGAAGATGAA
* ** *
6941076 TATGCTCATAATATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCAA
6941141 AAACCAATCATTGAATTTGGAAGATGAA
66 AAACCAATCATTGAATTTGGAAGATGAA
* * *
6941169 TGTGCTCATAGCAACTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCAA
6941234 AAACCAATCATTGAATTTGGAAGATGAA
66 AAACCAATCATTGAATTTGGAAGATGAA
* * *
6941262 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGATGTGAACCCCAA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCC-A
*
6941327 AAAACCAATCATTGAATTTAGAAGATGAA
65 AAAACCAATCATTGAATTTGGAAGATGAA
*
6941356 TGTGCTCATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAA-CCAC
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCA-
* * *
6941420 AGAACCAATCATTGGATTTGAAAGATGAA
65 AAAACCAATCATTGAATTTGGAAGATGAA
6941449 TGTGCTCATAG
1 TGTGCTCATAG
6941460 TAGAAATAAG
Statistics
Matches: 447, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
92 1 0.00
93 356 0.80
94 90 0.20
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (93 bp):
TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAAACCCAA
AAACCAATCATTGAATTTGGAAGATGAA
Found at i:6943881 original size:22 final size:23
Alignment explanation
Indices: 6943845--6943901 Score: 91
Period size: 22 Copynumber: 2.6 Consensus size: 23
6943835 ACATCTACAC
*
6943845 TCTTCAAATATGATAGATTCTCT
1 TCTTCAAAGATGATAGATTCTCT
6943868 TCTT-AAAGATGATAGATTCTCT
1 TCTTCAAAGATGATAGATTCTCT
6943890 T-TTCAAAGATGA
1 TCTTCAAAGATGA
6943902 AAGCTTTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 2 0.06
22 26 0.81
23 4 0.12
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (23 bp):
TCTTCAAAGATGATAGATTCTCT
Found at i:6944680 original size:76 final size:76
Alignment explanation
Indices: 6944581--6945417 Score: 1423
Period size: 76 Copynumber: 11.0 Consensus size: 76
6944571 CTATTTCCCA
6944581 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
6944646 AGCCTCAGGGT
66 AGCCTCAGGGT
6944657 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6944722 AGCCTTAGGGT
66 AGCCTCAGGGT
* *
6944733 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCATTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6944798 AGCCTTAGGGT
66 AGCCTCAGGGT
* * *
6944809 CATCTGTAAGTCCTTCAGTGCATGTTGTTTCCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6944874 AGCCTTAGGGT
66 AGCCTCAGGGT
** *
6944885 CATCTGTAAGTCCTTAAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6944950 AGCCTTAGGGT
66 AGCCTCAGGGT
* **
6944961 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATATTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6945026 AGCCTTAGGGT
66 AGCCTCAGGGT
*
6945037 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGAT-TTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
6945101 AGCC-CTAGGGT
66 AGCCTC-AGGGT
6945112 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
6945176 AGCCTTC-GGGT
66 AGCC-TCAGGGT
6945187 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
6945252 A-CCTTCAGGGT
66 AGCC-TCAGGGT
6945263 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6945328 ACCCTCAGGGT
66 AGCCTCAGGGT
* *
6945339 TATCTGTAAGTCCTGCAGTGCATGAAGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
6945404 ACCCTCAGGGT
66 AGCCTCAGGGT
6945415 CAT
1 CAT
6945418 TCATAAGATC
Statistics
Matches: 733, Mismatches: 21, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
75 149 0.20
76 581 0.79
77 3 0.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTCAGGGT
Found at i:6945583 original size:14 final size:14
Alignment explanation
Indices: 6945564--6945626 Score: 74
Period size: 14 Copynumber: 4.2 Consensus size: 14
6945554 CTAATTTTTC
6945564 ATTTTACTT-TTATT
1 ATTTTA-TTATTATT
6945578 ATTTTATTATTATT
1 ATTTTATTATTATT
6945592 ATTATTATAATATTATT
1 ATT-TTAT--TATTATT
6945609 ATTGTTATTATTATT
1 ATT-TTATTATTATT
6945624 ATT
1 ATT
6945627 AAATAATACA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
13 2 0.05
14 14 0.32
15 14 0.32
17 14 0.32
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
ATTTTATTATTATT
Found at i:6945587 original size:3 final size:3
Alignment explanation
Indices: 6945573--6945627 Score: 78
Period size: 3 Copynumber: 19.0 Consensus size: 3
6945563 CATTTTACTT
* *
6945573 TTA TTA TT- TTA TTA TTA TTA TTA TTA -TA ATA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6945619 TTA TTA TTA
1 TTA TTA TTA
6945628 AATAATACAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
2 4 0.09
3 43 0.91
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6945596 original size:20 final size:20
Alignment explanation
Indices: 6945573--6945627 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
6945563 CATTTTACTT
6945573 TTATTATTTTATTATTATTA
1 TTATTATTTTATTATTATTA
** *
6945593 TTATTATAATATTATTATTG
1 TTATTATTTTATTATTATTA
6945613 TTATTATTATTATTA
1 TTATTATT-TTATTA
6945628 AATAATACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTATTATTTTATTATTATTA
Found at i:6947140 original size:125 final size:131
Alignment explanation
Indices: 6947036--6947409 Score: 304
Period size: 150 Copynumber: 2.7 Consensus size: 131
6947026 TATTTTTATT
** * * * *
6947036 TATTTTTTAATATTGAAGAGAATAGCTGTCTTAAGGCACCTAGAAGTCATTTTCTGATATTT-TC
1 TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCT-
6947100 AAATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAATGTTTTAGTTATT
65 AAATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAA----TTAGTTATT
6947165 TACTTA
126 TACTTA
* * *
6947171 TTTTTTTTAATATCAAATAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTTTCTGATATTTCTA
1 TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCTA
* * *
6947236 AATAAGTAAATATCTTACTTTTATAAATTATATGTATCAATCTATTTTTTATTATTATTTTTAGA
66 AATAAATAAATATCTTA---TTAT--ATTA-A--AAT-AA---A---TTT-TTATT-TTTTAAGA
* * *
6947301 AAAAT-GTTTTTATATTTA
114 AAATTAGTTATT-TACTTA
* * *
6947319 TTCATTTTTCAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTCC-TTTTCTGATATTT
1 -T-ATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAG-CCATTTTCTGATATTT
* *
6947383 CTAAATAAGTAAATATATTATATATAT
63 CTAAATAAATAAATATCTTAT-TATAT
6947410 ATTAATATAT
Statistics
Matches: 195, Mismatches: 21, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
135 70 0.36
136 1 0.01
138 4 0.02
140 4 0.02
141 1 0.01
143 2 0.01
144 2 0.01
146 2 0.01
147 7 0.04
148 9 0.05
149 1 0.01
150 75 0.38
151 7 0.04
152 10 0.05
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (131 bp):
TATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCATTTTCTGATATTTCTA
AATAAATAAATATCTTATTATATTAAAATAAATTTTTATTTTTTAAGAAAATTAGTTATTTACTT
A
Found at i:6949117 original size:15 final size:15
Alignment explanation
Indices: 6949097--6949148 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
6949087 TATAAAATTC
6949097 TAAAATTGATGATAT
1 TAAAATTGATGATAT
*
6949112 TAAAATACAGA-GAT-T
1 TAAAAT--TGATGATAT
6949127 CTAAAATTGATGATAT
1 -TAAAATTGATGATAT
6949143 TAAAAT
1 TAAAAT
6949149 ACAGAGATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 2 0.07
15 16 0.53
16 10 0.33
17 2 0.07
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.35
Consensus pattern (15 bp):
TAAAATTGATGATAT
Found at i:6949131 original size:31 final size:31
Alignment explanation
Indices: 6949093--6949157 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
6949083 AGAGTATAAA
6949093 ATTCTAAAATTGATGATATTAAAATACAGAG
1 ATTCTAAAATTGATGATATTAAAATACAGAG
6949124 ATTCTAAAATTGATGATATTAAAATACAGAG
1 ATTCTAAAATTGATGATATTAAAATACAGAG
6949155 ATT
1 ATT
6949158 AATAACAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (31 bp):
ATTCTAAAATTGATGATATTAAAATACAGAG
Found at i:6950264 original size:2 final size:2
Alignment explanation
Indices: 6950259--6950283 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6950249 CTAAAAAAAT
6950259 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6950284 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6950565 original size:16 final size:15
Alignment explanation
Indices: 6950543--6950599 Score: 66
Period size: 15 Copynumber: 3.9 Consensus size: 15
6950533 TCTAAATATA
6950543 TATTTAATTTTTTAG
1 TATTTAATTTTTTAG
6950558 TCATTTAA-TTTTTA-
1 T-ATTTAATTTTTTAG
*
6950572 TTTTTAATATTTTT-G
1 TATTTAAT-TTTTTAG
6950587 TATTTAATTTTTT
1 TATTTAATTTTTT
6950600 CTATATTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 5 0.14
14 6 0.17
15 19 0.53
16 6 0.17
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (15 bp):
TATTTAATTTTTTAG
Found at i:6950579 original size:13 final size:14
Alignment explanation
Indices: 6950543--6950599 Score: 64
Period size: 16 Copynumber: 3.9 Consensus size: 14
6950533 TCTAAATATA
6950543 TATTTAATTTTTTAG
1 TATTTAATTTTTT-G
6950558 TCATTTAATTTTTAT-
1 T-ATTTAATTTTT-TG
6950573 T-TTTAATATTTTTG
1 TATTTAAT-TTTTTG
6950587 TATTTAATTTTTT
1 TATTTAATTTTTT
6950600 CTATATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
13 7 0.19
14 10 0.27
15 8 0.22
16 11 0.30
17 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (14 bp):
TATTTAATTTTTTG
Found at i:6957456 original size:20 final size:20
Alignment explanation
Indices: 6957431--6957490 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
6957421 CCCTAGTATC
6957431 GGTTTGAGTCAACTTGAACT
1 GGTTTGAGTCAACTTGAACT
*
6957451 GGTTTGAGTCAACTTGAACC
1 GGTTTGAGTCAACTTGAACT
* *
6957471 GGTCTCAGTCAACTTGAACT
1 GGTTTGAGTCAACTTGAACT
6957491 CGGATCAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (20 bp):
GGTTTGAGTCAACTTGAACT
Found at i:6958472 original size:27 final size:28
Alignment explanation
Indices: 6958424--6958482 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
6958414 AAAATTACTG
6958424 AAATACCCTTGAACTATAAAATGA-CCA
1 AAATACCCTTGAACTATAAAATGACCCA
* * * *
6958451 AAATACTCTTGAAGTGTGAAATGACCCA
1 AAATACCCTTGAACTATAAAATGACCCA
6958479 AAAT
1 AAAT
6958483 GCCCGCAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.24
Consensus pattern (28 bp):
AAATACCCTTGAACTATAAAATGACCCA
Found at i:6961030 original size:21 final size:22
Alignment explanation
Indices: 6961001--6961063 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 22
6960991 TCGAGGGTTC
6961001 TACGTGGTCCTTCGGGACA-TA
1 TACGTGGTCCTTCGGGACATTA
* * * *
6961022 TATGTGGTCATTCGGGATATTTC
1 TACGTGGTCCTTCGGGACA-TTA
6961045 TACGTGGTCCTTCGGGACA
1 TACGTGGTCCTTCGGGACA
6961064 ATTTTATATG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 16 0.48
23 17 0.52
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (22 bp):
TACGTGGTCCTTCGGGACATTA
Found at i:6961058 original size:23 final size:22
Alignment explanation
Indices: 6960998--6961063 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
6960988 GAGTCGAGGG
6960998 TTCTACGTGGTCCTTCGGGACA
1 TTCTACGTGGTCCTTCGGGACA
* * * *
6961020 -TATATGTGGTCATTCGGGATA
1 TTCTACGTGGTCCTTCGGGACA
6961041 TTTCTACGTGGTCCTTCGGGACA
1 -TTCTACGTGGTCCTTCGGGACA
6961064 ATTTTATATG
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
21 17 0.50
23 17 0.50
ACGTcount: A:0.17, C:0.21, G:0.27, T:0.35
Consensus pattern (22 bp):
TTCTACGTGGTCCTTCGGGACA
Found at i:6962817 original size:32 final size:32
Alignment explanation
Indices: 6962776--6962917 Score: 133
Period size: 32 Copynumber: 4.4 Consensus size: 32
6962766 CATAAAGTAA
* *
6962776 CCTTGGGTAGGCTCTGAGGCCTC-AAGATATTT
1 CCTTGGGTAGGCTCTAAGGCC-CAAAGATACTT
* * *
6962808 CCTTGGGTAGGTTATAAAGCCCAAAGATACTT
1 CCTTGGGTAGGCTCTAAGGCCCAAAGATACTT
* * * * *
6962840 CCTTGGGTAGGTTCTTAGGCCCTAAGGTACTC
1 CCTTGGGTAGGCTCTAAGGCCCAAAGATACTT
* * *
6962872 CCTTGGGTAGGCTCTCAGGCCCCAAGATACTC
1 CCTTGGGTAGGCTCTAAGGCCCAAAGATACTT
* *
6962904 CCTTAGGTTGGCTC
1 CCTTGGGTAGGCTC
6962918 CTACGCGCAA
Statistics
Matches: 92, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
31 1 0.01
32 91 0.99
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (32 bp):
CCTTGGGTAGGCTCTAAGGCCCAAAGATACTT
Found at i:6962899 original size:64 final size:64
Alignment explanation
Indices: 6962776--6962917 Score: 151
Period size: 64 Copynumber: 2.2 Consensus size: 64
6962766 CATAAAGTAA
* * * *
6962776 CCTTGGGTAGGCTCTGAGGCCTCAAGATATTTCCTTGGGTAGGTTATAAAGCCCAAAGATACTT
1 CCTTGGGTAGGCTCTGAGGCCTCAAGATACTCCCTTGGGTAGGCTATAAAGCCCAAAGATACTC
* * * * * * *
6962840 CCTTGGGTAGGTTCTTAGGCC-CTAAGGTACTCCCTTGGGTAGGCTCTCAGGCCCCAAGATACTC
1 CCTTGGGTAGGCTCTGAGGCCTC-AAGATACTCCCTTGGGTAGGCTATAAAGCCCAAAGATACTC
* *
6962904 CCTTAGGTTGGCTC
1 CCTTGGGTAGGCTC
6962918 CTACGCGCAA
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
63 1 0.02
64 62 0.98
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (64 bp):
CCTTGGGTAGGCTCTGAGGCCTCAAGATACTCCCTTGGGTAGGCTATAAAGCCCAAAGATACTC
Found at i:6963852 original size:14 final size:14
Alignment explanation
Indices: 6963835--6963864 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6963825 AAAACTGTTC
*
6963835 AATTCAAACGGTTT
1 AATTCAAACCGTTT
6963849 AATTCAAACCGTTT
1 AATTCAAACCGTTT
6963863 AA
1 AA
6963865 ATGAGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (14 bp):
AATTCAAACCGTTT
Found at i:6964105 original size:2 final size:2
Alignment explanation
Indices: 6964100--6964140 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
6964090 AAAAATGAAG
6964100 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6964141 CAGGTTTCTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6966761 original size:18 final size:19
Alignment explanation
Indices: 6966734--6966771 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
6966724 TTATACTATT
*
6966734 AATAATTAAT-TTTTTTAA
1 AATAAATAATATTTTTTAA
6966752 AATAAATAATAGTTTTTTAA
1 AATAAATAATA-TTTTTTAA
6966772 TTACCACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
AATAAATAATATTTTTTAA
Found at i:6971811 original size:33 final size:34
Alignment explanation
Indices: 6971774--6971845 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
6971764 ACCTTTACAA
* *
6971774 TTCCCTAG-TTTTTCACGGGATAAACTATAACCT
1 TTCCCTAGATTTTACACGGGATAAACTAGAACCT
* * *
6971807 TTCCCTAGATTTTACACGGGCTAAGCTAGAATCT
1 TTCCCTAGATTTTACACGGGATAAACTAGAACCT
6971841 TTCCC
1 TTCCC
6971846 CTTTATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
33 8 0.24
34 25 0.76
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (34 bp):
TTCCCTAGATTTTACACGGGATAAACTAGAACCT
Found at i:6972350 original size:20 final size:20
Alignment explanation
Indices: 6972321--6972358 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6972311 TTTCAAAGGA
6972321 ATGCACCGATGCACCAATCC
1 ATGCACCGATGCACCAATCC
*
6972341 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
6972359 GAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.34, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCC
Found at i:6972438 original size:65 final size:64
Alignment explanation
Indices: 6972369--6972528 Score: 180
Period size: 65 Copynumber: 2.5 Consensus size: 64
6972359 GAATAAATTG
* * *
6972369 AACATCGAATGCATTTTATGCATCGATGCACACA-CCATGCATCAATGCACTCAGG-TTTTTATG
1 AACATCGAATGCATTTCATGCATCGATGCACA-AGACATGCATCAATGCACTCAGGCTATTT-TG
6972432 AA
64 -A
* * * **
6972434 AACATCAAATGCATTTGATGCATCGATGCACAAGACATGTATTGATGCACTCAGGCTATTTTGA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCAATGCACTCAGGCTATTTTGA
* * *
6972498 AATATCGAATGCACTTCATGCATCTATGCAC
1 AACATCGAATGCATTTCATGCATCGATGCAC
6972529 TCTTAGTGCA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
64 28 0.35
65 49 0.60
66 4 0.05
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGACATGCATCAATGCACTCAGGCTATTTTGA
Done.