Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 41
Found at i:7779621 original size:19 final size:19
Alignment explanation
Indices: 7779580--7779647 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
7779570 GAAATGAAAA
7779580 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
7779596 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
7779613 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
7779632 TCGCATTGCAATTTTC
1 TCGCATTGCGATTTTC
7779648 TCGTTGCGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 11 0.24
16 3 0.07
17 3 0.07
19 29 0.63
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:7779783 original size:14 final size:14
Alignment explanation
Indices: 7779764--7779800 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7779754 CATCAATTAA
7779764 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
7779778 ACAAATCATCTTTT
1 ACAAATCAACATTT
7779792 ACAAATCAA
1 ACAAATCAA
7779801 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:7781703 original size:20 final size:19
Alignment explanation
Indices: 7781668--7781734 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
7781658 GAAACTTAAA
7781668 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
7781687 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* * **
7781707 ATCGCAATGCAAAATGAAA
1 ATCGCAACGCGAAATGACT
7781726 ATCGCAACG
1 ATCGCAACG
7781735 ACAAAATCGC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
19 23 0.57
20 17 0.43
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:7781740 original size:14 final size:14
Alignment explanation
Indices: 7781723--7781780 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
7781713 ATGCAAAATG
7781723 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
7781737 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
7781753 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
7781769 AAAATCGCAACG
1 AAAATCGCAACG
7781781 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:7781765 original size:32 final size:33
Alignment explanation
Indices: 7781707--7781785 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
7781697 GGAAATGGCT
* *
7781707 ATCGCAATGCAAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
7781740 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
7781772 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
7781786 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 30 0.68
33 14 0.32
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:7781833 original size:14 final size:14
Alignment explanation
Indices: 7781814--7781871 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
7781804 TTTCATTTCG
*
7781814 CGTTGCAATTTTGT
1 CGTTGCGATTTTGT
*
7781828 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
7781844 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
7781860 CGTTGCGATTTT
1 CGTTGCGATTTT
7781872 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7781878 original size:33 final size:33
Alignment explanation
Indices: 7781797--7781887 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
7781787 ACAAATCGCA
* *
7781797 TTGCGATTTTCATTTCGCGTTGCAATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7781830 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
7781862 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
7781888 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:7781906 original size:20 final size:19
Alignment explanation
Indices: 7781872--7781926 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
7781862 TTGCGATTTT
*
7781872 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
7781891 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
7781911 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
7781927 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:7782433 original size:18 final size:18
Alignment explanation
Indices: 7782407--7782451 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
7782397 GTCGATCAGA
*
7782407 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
7782425 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
7782443 TGATGGCTC
1 TGATGGCTC
7782452 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:7783795 original size:20 final size:20
Alignment explanation
Indices: 7783770--7783808 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7783760 AATAGTTTCT
7783770 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
7783790 GAAAATGACTATCGCAACA
1 GAAAATGAAAATCGCAACA
7783809 AGAGAATCGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.21, G:0.15, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:7784327 original size:20 final size:20
Alignment explanation
Indices: 7784302--7784395 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
7784292 GATTATGTAT
7784302 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
7784322 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
7784342 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
7784363 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
7784383 TATCGCATTGCGA
1 TATCGCGTTGCGA
7784396 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:7784396 original size:20 final size:20
Alignment explanation
Indices: 7784282--7784396 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
7784272 CGCTTTGAAA
*
7784282 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
7784303 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
7784323 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
7784343 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
7784364 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
7784384 ATCGCATTGCGAT
1 ATCGCATTGCGAT
7784397 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:7784414 original size:21 final size:21
Alignment explanation
Indices: 7784385--7784477 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 21
7784375 ATAGTCAGTA
7784385 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
7784406 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
7784426 TCGCATTACGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
7784447 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
7784467 TCGCATTGCGA
1 TCGCATTGCGA
7784478 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:7784415 original size:41 final size:41
Alignment explanation
Indices: 7784324--7784458 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
7784314 AAAGTCAGTA
* * * ** *
7784324 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
7784364 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
7784406 TCGCGTTGCGAT-TTACTTATTCGCATTACGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
7784447 TCGCGTTGCGAT
1 TCGCGTTGCGAT
7784459 TTACTTATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 73 0.94
42 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:7784459 original size:41 final size:41
Alignment explanation
Indices: 7784385--7784473 Score: 169
Period size: 41 Copynumber: 2.2 Consensus size: 41
7784375 ATAGTCAGTA
*
7784385 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTACGATTTTCCCAATTCGCGTTGCGATTTACTTAT
7784426 TCGCATTACGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTACGATTTTCCCAATTCGCGTTGCGATTTACTTAT
7784467 TCGCATT
1 TCGCATT
7784474 GCGAATTGGG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.42
Consensus pattern (41 bp):
TCGCATTACGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:7786390 original size:24 final size:24
Alignment explanation
Indices: 7786358--7786410 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
7786348 GTCAGTGTTG
7786358 TTCAGCCTAAATAGTAAGCTTTCT
1 TTCAGCCTAAATAGTAAGCTTTCT
7786382 TTCAGCCTAAATAGTAAGCTTTCT
1 TTCAGCCTAAATAGTAAGCTTTCT
7786406 TTCAG
1 TTCAG
7786411 TATTTCACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (24 bp):
TTCAGCCTAAATAGTAAGCTTTCT
Found at i:7788521 original size:39 final size:39
Alignment explanation
Indices: 7788478--7788555 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
7788468 TTATTTATAC
7788478 TTGTTGCATGTTAATTCATGCCTTTTAAATACATGGATT
1 TTGTTGCATGTTAATTCATGCCTTTTAAATACATGGATT
7788517 TTGTTGCATGTTAATTCATGCCTTTTAAATACATGGATT
1 TTGTTGCATGTTAATTCATGCCTTTTAAATACATGGATT
7788556 AGATTGCATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (39 bp):
TTGTTGCATGTTAATTCATGCCTTTTAAATACATGGATT
Found at i:7788563 original size:39 final size:39
Alignment explanation
Indices: 7788480--7788565 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
7788470 ATTTATACTT
*
7788480 GTTGCATGTTAATTCATGCCTTTTAAATACATGGATTTT
1 GTTGCATGTTAATTCATGCCTTTTAAATACATGGATTTA
7788519 GTTGCATGTTAATTCATGCCTTTTAAATACATGGA-TTA
1 GTTGCATGTTAATTCATGCCTTTTAAATACATGGATTTA
7788557 GATTGCATG
1 G-TTGCATG
7788566 AGCCTTTAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
38 3 0.07
39 42 0.93
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (39 bp):
GTTGCATGTTAATTCATGCCTTTTAAATACATGGATTTA
Found at i:7791749 original size:2 final size:2
Alignment explanation
Indices: 7791744--7791772 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7791734 TGTGTGTGTG
7791744 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7791773 CTTACACATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7794706 original size:228 final size:226
Alignment explanation
Indices: 7794238--7795820 Score: 1616
Period size: 228 Copynumber: 6.9 Consensus size: 226
7794228 ACCACGGAGG
* * * *
7794238 CGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAA-AGTTCGACCATCCT
1 CGAAGGACAAG-TGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGC-AAGAGTCCGGCCATCCT
* * * * * *
7794302 CCAA-CTGCTTCCCAGCAAAGATCAA-CCTCTGCTGATCCGG-GGGAATTCCCTCCTTGTCCTGA
64 -CAAGTTGCTTTCCAGCAAAGAT-AAGCCTCTGCTGGTCAGGTGGG-ATGCCCTCCTTGTCCTGG
* * * * * * * * *
7794364 ATCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTTTCAACCT-CAAGGGTGATTGTTTTACCAG
126 ATCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAA-GGTGATGGTCTTACCAG
* * * * * * * ** *
7794428 TCAGGGTCTTGACAAATATCTGCATCCCTCCTCTAAGG
190 TAAGAGTTTTCACAAAGATCTGCATGCCACC-CCGAGA
* * * * * **
7794466 CGCAA-AACCAAGTGCAGAGTTGACTCCTTT-TGAATGTTATAATCGGCAAGAGTCCTCCCATCC
1 CG-AAGGA-CAAGTGCAGGGTTGACT-CTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCC
* * * *
7794529 TCAAGCTGCTTTCCAGCAAAAATCAA-CCTCTGCTGGTCAGGTGGTATGCCCTCCTTATCCTGGA
63 TCAAGTTGCTTTCCAGCAAAGAT-AAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGA
* * * *
7794593 TCTTGGCCTTGACATTGTCAATTGTGTCAGAGCTCTCCACCTCCAATGTAATGGTCTTACCGGTC
127 TCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGT-
* * *
7794658 AA-AGTTTTCACAAAAATCTGCATTCCACCACGCAGA
191 AAGAGTTTTCACAAAGATCTGCATGCCACCCCG-AGA
* * * * * **
7794694 CGAAGGACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGTGTCCTCCCATCCTC
1 CGAAGGA-CAAGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCT-
* * * * *
7794759 CAA-CTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGGATC
64 CAAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATC
* * * * * * *
7794823 TTGGCCTTGACATTGTCAGTAGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTTCCAGTGAG
129 TTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGTAAG
* * *
7794888 GGTTTTTACAAAGATCTGCATGCCACCCCTAAGA
194 AGTTTTCACAAAGATCTGCATGCCACCCC-GAGA
* * * * * *
7794922 CGAAGGACAAGGTGGAGGGTTGATTCTTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTC
1 CGAAGGACAA-GTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTC
* * * * * *
7794987 AAGTTG-TTTACCCGCAAAGATTAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTATCCTGGATC
65 AAGTTGCTTT-CCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATC
* * *
7795051 TTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTAAG
129 TTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGTAAG
*
7795116 AGTCTTCACAAAGATCTGCATGCCACCCCTGAGA
194 AGTTTTCACAAAGATCTGCATGCCACCCC-GAGA
* * *
7795150 CGAAGGACAAGGTGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGCAAGAGTGCGGCCATCCTC
1 CGAAGGACAA-GTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTC
* * * *
7795215 AAGTTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCT
65 AAGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCT
* * *
7795280 TGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGA
130 TGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGA
7795345 GTCTTT-ACAAAGATCTGCATGCCACCCCTGAGA
195 GT-TTTCACAAAGATCTGCATGCCACCCC-GAGA
* * *
7795378 CGAAGAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCCTC
1 CGAAGGACAA-GTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTC
* * * *
7795443 GAGTTG-TTTGCCGGCAAAGATAAGCCTCTGCTGGTCAGGTGGTATGCCCTCCTTGTCTTGGATC
65 AAGTTGCTTT-CCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATC
* * * * * * *
7795507 TTGGCCTTGACATTATCGATAGTATCGGAGCTTTCCACCT-CAAGGGTGATTGTCTTGCCAGTAA
129 TTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAA-GGTGATGGTCTTACCAGTAA
* * * *
7795571 GGGTTTTTACAAAAATCTGCATGCCACCCCTGAGC
193 GAGTTTTCACAAAGATCTGCATGCCACCCC-GAGA
* * * *
7795606 CGAAGGACAAGATGGAGGGTAGACTCCTTT-TGGATGTTGTAATCAGCAAGTGTACGGCCATCCT
1 CGAAGGACAAG-TGCAGGGTTGACT-CTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCT
* * * *
7795670 CGAGTTG-TTTGCCAGCAAAGATAAGCCTCTGTTGGTCAGGAGGGAT-CCCTTCCTTATCCTGGA
64 CAAGTTGCTTT-CCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCC-TCCTTGTCCTGGA
* * * * * * * *
7795733 TCTTGGCCTTGACATTATCAATTGTGTCCGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTA
127 TCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGTA
7795798 AGAGTTTTCACAAAGATCTGCAT
192 AGAGTTTTCACAAAGATCTGCAT
7795821 CTGTAATGTC
Statistics
Matches: 1176, Mismatches: 152, Indels: 54
0.85 0.11 0.04
Matches are distributed among these distances:
227 33 0.03
228 1116 0.95
229 27 0.02
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (226 bp):
CGAAGGACAAGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCGGCCATCCTCA
AGTTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGGATCTT
GGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAG
TTTTCACAAAGATCTGCATGCCACCCCGAGA
Found at i:7795546 original size:684 final size:681
Alignment explanation
Indices: 7794238--7795821 Score: 1884
Period size: 684 Copynumber: 2.3 Consensus size: 681
7794228 ACCACGGAGG
* * * *
7794238 CGAAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGCTAA-AGTTCGACCATCCT
1 CGAAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAATCAGC-AAGAGTTCG-CCATCCT
* * * * * *
7794302 CCAA-CTGCTTCCCAGCAAAGATCAA-CCTCTGCTGATCCGGGGGAATTCCCTCCTTGTCCTGAA
64 -CAAGTTGTTTCCC-GCAAAGAT-AAGCCTCTGCTGATCAGGAGGAA-TCCCTCCTTATCCTGGA
* * * * * * * *
7794365 TCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTTTCAACCTCAAGGGTGATTGTTTTACCAGTC
125 TCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTA
* * * * * *
7794430 AGGGTCTTGACAAATATCTGCATCCCTCCTCTAAGGCGCAAAACCAAGTGCAGAGTTGACTCCTT
190 AGAGTCTTCACAAAGATCTGCATCCCACCCCTAAGACGCAAAACCAAGTGCAGAGTTGACTCCTT
* * * *
7794495 TTGAATGTTATAATCGGCAAGAGTCCTCCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCT
255 TTGAATATTATAATCAGCAAGAGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCT
* *
7794560 GCTGGTCAGGTGGTATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCAGAG
320 GCTGGTCAGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATAGTGTCAGAG
* * *
7794625 CTCTCCACCTCCAATGTAATGGTCTTACCGGTCAAAGTTTTCACAAAAATCTGCATTCCACCACG
385 CTCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACG
* * * *
7794690 CAGACGAAGGACCAAGTGGAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGTGTCCTCCCAT
450 CAGACGAAGGAACAAGTGCAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGCCCAT
*
7794755 CCTCCAACTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGG
515 CCTCCAACTGCTTTCCAGCAAAAATAAGCCTCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGG
* * *
7794820 ATCTTGGCCTTGACATTGTCAGTAGTATCAGAACTCTCCACCTCCAA-AGTGATGGTTTTTCCAG
580 ATCTTGGCCTTGACATTATCAGTAGTATCAGAACTCTCCACCT-CAAGAGTGATGGTCTTGCCAG
* *
7794884 TGAGGGTTTTTACAAAGATCTGCATGCCACCCCTAAGA
644 TAAGGGTTTTTACAAAAATCTGCATGCCACCCCTAAGA
* * * *
7794922 CGAAGGACAAGGTGGAGGGTTGATTCTTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTC
1 CGAAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAATCAGCAAGAGTTC-GCCATCCTC
* * *
7794987 AAGTTGTTTACCCGCAAAGATTAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTATCCTGGATCT
65 AAGTTGTTT-CCCGCAAAGATAAGCCTCTGCTGATCAGGAGGAAT-CCCTCCTTATCCTGGATCT
* * * *
7795052 TGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCAGTAAGA
128 TGGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTAAGA
* * * *
7795117 GTCTTCACAAAGATCTGCATGCCACCCCTGAGACG-AAGGA-CAAGGTGCAGGGTTGACT-CTTT
193 GTCTTCACAAAGATCTGCATCCCACCCCTAAGACGCAA-AACCAA-GTGCAGAGTTGACTCCTTT
* * * * * * * *
7795179 CTGGATATTGTAGTCAGCAAGAGTGCGGCCATCCTCAAGTTGCTTGCCGGCAAAGAT-AAGCCTC
256 -TGAATATTATAATCAGCAAGAGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAA-CCTC
* * *
7795243 TGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATAGTGTCAGA
319 TGCTGGTCAGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATAGTGTCAGA
* * * * *
7795308 GCTCTCCACCTCGAGGGTGATGGTCTTGCCAGT-AAGAGTCTTT-ACAAAGATCTGCATGCCACC
384 GCTCTCCACCTCCAAGGTAATGGTCTTACCAGTCAA-AGT-TTTCACAAAAATCTGCATGCCACC
* * * * * *
7795371 CCTG-AGACGAA-GAACAAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTGCG
447 AC-GCAGACGAAGGAACAA-GTGCAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGAGTCCG
* * ** * * * *
7795434 GCCATCCTCGAGTTG-TTTGCCGGCAAAGATAAGCCTCTGCTGGTCAGGTGGTATGCCCTCCTTG
510 CCCATCCTCCAACTGCTTT-CCAGCAAAAATAAGCCTCTGCTGATCAGGTGGGATGCCCTCCTTG
* * * * *
7795498 TCTTGGATCTTGGCCTTGACATTATC-GATAGTATCGGAGCTTTCCACCTCAAGGGTGATTGTCT
574 TCTTGGATCTTGGCCTTGACATTATCAG-TAGTATCAGAACTCTCCACCTCAAGAGTGATGGTCT
* *
7795562 TGCCAGTAAGGGTTTTTACAAAAATCTGCATGCCACCCCTGAGC
638 TGCCAGTAAGGGTTTTTACAAAAATCTGCATGCCACCCCTAAGA
* * *
7795606 CGAAGGACAAGATGGAGGGTAGACTCCTTT-TGGATGTTGTAATCAGCAAGTGTACGGCCATCCT
1 CGAAGGACAAGATGGAGGGTAGA-TTCTTTCTGGATGTTGTAATCAGCAAGAGTTC-GCCATCCT
* * * * *
7795670 CGAGTTGTTTGCCAGCAAAGATAAGCCTCTGTTGGTCAGGAGGGATCCCTTCCTTATCCTGGATC
64 CAAGTTGTTT-CCCGCAAAGATAAGCCTCTGCTGATCAGGAGGAATCCC-TCCTTATCCTGGATC
* * *
7795735 TTGGCCTTGACATTATCAATTGTGTCCGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTAAG
127 TTGGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTAAG
*
7795800 AGTTTTCACAAAGATCTGCATC
192 AGTCTTCACAAAGATCTGCATC
7795822 TGTAATGTCA
Statistics
Matches: 764, Mismatches: 117, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
683 35 0.05
684 716 0.94
685 13 0.02
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (681 bp):
CGAAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAATCAGCAAGAGTTCGCCATCCTCA
AGTTGTTTCCCGCAAAGATAAGCCTCTGCTGATCAGGAGGAATCCCTCCTTATCCTGGATCTTGG
CCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATTGTCTTACCAGTAAGAGTC
TTCACAAAGATCTGCATCCCACCCCTAAGACGCAAAACCAAGTGCAGAGTTGACTCCTTTTGAAT
ATTATAATCAGCAAGAGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGT
CAGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAATAGTGTCAGAGCTCTCC
ACCTCCAAGGTAATGGTCTTACCAGTCAAAGTTTTCACAAAAATCTGCATGCCACCACGCAGACG
AAGGAACAAGTGCAGGGTTGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGCCCATCCTCCA
ACTGCTTTCCAGCAAAAATAAGCCTCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGGATCTTG
GCCTTGACATTATCAGTAGTATCAGAACTCTCCACCTCAAGAGTGATGGTCTTGCCAGTAAGGGT
TTTTACAAAAATCTGCATGCCACCCCTAAGA
Found at i:7798001 original size:25 final size:26
Alignment explanation
Indices: 7797973--7798022 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7797963 TAAATTTTTA
*
7797973 ATTTTG-ATCG-AGTTTTAAAAATTTG
1 ATTTTGAATCGTA-TTTAAAAAATTTG
7797998 ATTTTGAATCGTATTTAAAAAATTT
1 ATTTTGAATCGTATTTAAAAAATTT
7798023 AAGCATGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 6 0.27
26 15 0.68
27 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (26 bp):
ATTTTGAATCGTATTTAAAAAATTTG
Found at i:7798675 original size:12 final size:12
Alignment explanation
Indices: 7798660--7798712 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
7798650 GTTATTTAAA
7798660 CGGGTATTGGGC
1 CGGGTATTGGGC
*
7798672 CGGGTATTGGGT
1 CGGGTATTGGGC
*
7798684 CGGGTATTGGGT
1 CGGGTATTGGGC
* *
7798696 CGGGAATCGGGC
1 CGGGTATTGGGC
7798708 CGGGT
1 CGGGT
7798713 GTATATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.09, C:0.15, G:0.51, T:0.25
Consensus pattern (12 bp):
CGGGTATTGGGC
Found at i:7799862 original size:228 final size:228
Alignment explanation
Indices: 7799493--7800567 Score: 1341
Period size: 228 Copynumber: 4.7 Consensus size: 228
7799483 GTGGAGAGTC
* * * *
7799493 GATTCCTTCTGGATGTTGTAGTCCGCAAGAGTCCTGCCATCCTCGAGCTGCTTCCCTGCAAAGAT
1 GATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGAT
* * * * *
7799558 TAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACATTATCAATGG
66 CAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATGG
* *
7799623 TGTCTGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGCGTCTTCACAAAAATCTGCATA
131 TGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAAATCTGCATA
* *
7799688 CCACCACGGAGACGAAGCACTAAGTGAAGGGTC
196 CCACCACGGAGACGAAGCACCAAGTGAAGGGTG
* * * * * *
7799721 GACTCTTTCTGAATGTTGTAGTCAGCAAGAGTCCTGCCATCCTCAAGCTGCTTCCCAGCAAAGAT
1 GATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGAT
*
7799786 CAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGG
66 CAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATGG
*
7799851 TGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAAATCTGCATA
131 TGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAAATCTGCATA
*
7799916 CCACCACGGAGACGGAGCACCAAGTGAAGGGTG
196 CCACCACGGAGACGAAGCACCAAGTGAAGGGTG
* * * * * * *
7799949 GATTCCTTTTGGATGTTGTAGTCAGCCAAG-GTGCGGCCATCTTCGAGTTGTTTACCGGCAAAAA
1 GATTCCTTCTGGATGTTGTAGTCAG-CAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGA
* * * * *
7800013 TCAACCTCTGCTGGTCTGGCGGGATACCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCAATG
65 TCAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATG
*
7800078 GTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCTGTGAGTGTCTTCACAAAAATCTGCAT
130 GTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAAATCTGCAT
*
7800143 ACCACCACGGAGACGGAGCACCAAGTGAAGGGTG
195 ACCACCACGGAGACGAAGCACCAAGTGAAGGGTG
* * * * *
7800177 GATTCCTTCTGGATGTTATAGTCAGCCAAG-GTGCGGCCATCCTCGAGTTGTTTACCAGCAAATA
1 GATTCCTTCTGGATGTTGTAGTCAG-CAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGA
* * * * * * * *
7800241 TCAACCTCTGCTGGTCCGGGGGAATCCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCAATG
65 TCAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATG
* * * * * * * * * * * *
7800306 GTGTCGGAGCTTTCCACCTCGAGGGTGATGGTTTTGCCGGTAAGGGTCTTAACAAAGATTTGCAT
130 GTGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAAATCTGCAT
* ** * * * *
7800371 ACCACCCCTCAAACGAAGGACCAAGTGGAGCGTG
195 ACCACCACGGAGACGAAGCACCAAGTGAAGGGTG
* * * * * *
7800405 GACTCCTTCTGAATGTTGTAGTCCGCAAGAGTACGGCCATCCTCCAGCTG-TTTCCAGCAAAGAT
1 GATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGAT
* * * * *
7800469 -AAGCCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATG
66 CAA-CCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATG
* * *
7800533 GTGTCGGAGCTTTCCACCT-CAAGGGTGATGGTCTT
130 GTGTCCGAGCTCTCAACCTCCAA-GGTGATGGTCTT
7800568 GCCAGTAAGG
Statistics
Matches: 753, Mismatches: 90, Indels: 9
0.88 0.11 0.01
Matches are distributed among these distances:
226 3 0.00
227 99 0.13
228 647 0.86
229 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (228 bp):
GATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTACCAGCAAAGAT
CAACCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTAGCCTTGACATTATCAATGG
TGTCCGAGCTCTCAACCTCCAAGGTGATGGTCTTCCCGGTGAGTGTCTTCACAAAAATCTGCATA
CCACCACGGAGACGAAGCACCAAGTGAAGGGTG
Found at i:7802034 original size:30 final size:30
Alignment explanation
Indices: 7801978--7802036 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7801968 GATTTATTTA
*
7801978 GTGACCAAATTATAAATTTGGTAAAGTTTG
1 GTGACCAAAGTATAAATTTGGTAAAGTTTG
*
7802008 GTGATCAAAGTATAAACTTTGG-AAAGTTT
1 GTGACCAAAGTATAAA-TTTGGTAAAGTTT
7802037 AAGGACCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.36
Consensus pattern (30 bp):
GTGACCAAAGTATAAATTTGGTAAAGTTTG
Found at i:7804304 original size:44 final size:45
Alignment explanation
Indices: 7804256--7804374 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 45
7804246 ATAACCATGC
*
7804256 AAATAAGATTACGAGCTTATGGAAT-AATAGAAAGTATATAGGTA
1 AAATAAGCTTACGAGCTTATGGAATAAATAGAAAGTATATAGGTA
* * * *
7804300 AAATAAGCTTACGAGCTTATGTGATTAAATGGTAAGTATATTGGTA
1 AAATAAGCTTACGAGCTTATG-GAATAAATAGAAAGTATATAGGTA
7804346 AAATAAGCTTACGAGCTTATAGGAA-AAAT
1 AAATAAGCTTACGAGCTTAT-GGAATAAAT
7804375 GGTAAGAAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 20 0.30
45 7 0.11
46 38 0.58
47 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATAGAAAGTATATAGGTA
Found at i:7806577 original size:18 final size:17
Alignment explanation
Indices: 7806554--7806587 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7806544 TTTTTTCTTC
*
7806554 TTTTCTTTTTCTATTTTG
1 TTTTCTTCTTC-ATTTTG
7806572 TTTTCTTCTTCATTTT
1 TTTTCTTCTTCATTTT
7806588 CCTCTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCTTCTTCATTTTG
Found at i:7806587 original size:24 final size:24
Alignment explanation
Indices: 7806541--7806588 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7806531 TTATTTTGTT
* *
7806541 TATTTTTTTCTTCTTTTCTTTTTC
1 TATTTTGTTCTTCTTTTCATTTTC
7806565 TATTTTGTT-TTCTTCTTCATTTTC
1 TATTTTGTTCTTCTT-TTCATTTTC
7806589 CTCTTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (24 bp):
TATTTTGTTCTTCTTTTCATTTTC
Found at i:7819723 original size:27 final size:25
Alignment explanation
Indices: 7819672--7819732 Score: 61
Period size: 26 Copynumber: 2.3 Consensus size: 25
7819662 TTTAATGTAA
* *
7819672 TAAAATAAATATAAAGCATTAAAAT
1 TAAAATAAATATAAAGAAATAAAAT
7819697 GTAAAATAAA-ATAAAGAAATAGGAAAT
1 -TAAAATAAATATAAAGAAATA--AAAT
7819724 TATAAATAA
1 TA-AAATAA
7819733 TCCAATGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 9 0.30
26 11 0.37
27 10 0.33
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.25
Consensus pattern (25 bp):
TAAAATAAATATAAAGAAATAAAAT
Found at i:7820020 original size:10 final size:10
Alignment explanation
Indices: 7820005--7820030 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7819995 ACGGAGGTAT
7820005 GTTCATGTTC
1 GTTCATGTTC
7820015 GTTCATGTTC
1 GTTCATGTTC
7820025 GTTCAT
1 GTTCAT
7820031 TTAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.50
Consensus pattern (10 bp):
GTTCATGTTC
Found at i:7820063 original size:16 final size:16
Alignment explanation
Indices: 7820042--7820074 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7820032 TAATAAATAG
7820042 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
7820058 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
7820074 A
1 A
7820075 AATTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:7820152 original size:10 final size:10
Alignment explanation
Indices: 7820137--7820209 Score: 52
Period size: 10 Copynumber: 7.7 Consensus size: 10
7820127 CATTTAATAA
7820137 ATAAACGAAC
1 ATAAACGAAC
7820147 ATAAACGAAC
1 ATAAACGAAC
7820157 ----ACGAAC
1 ATAAACGAAC
7820163 AT-AACGAAC
1 ATAAACGAAC
**
7820172 ACGAAC-ATA-
1 ATAAACGA-AC
7820181 ATGAACACGAAC
1 AT-AA-ACGAAC
7820193 ATAAACGAAC
1 ATAAACGAAC
7820203 ATAAACG
1 ATAAACG
7820210 TTGGAGACCC
Statistics
Matches: 51, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
6 6 0.12
9 9 0.18
10 28 0.55
11 5 0.10
12 3 0.06
ACGTcount: A:0.56, C:0.22, G:0.12, T:0.10
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:7820170 original size:15 final size:16
Alignment explanation
Indices: 7820141--7820203 Score: 103
Period size: 15 Copynumber: 4.1 Consensus size: 16
7820131 TAATAAATAA
7820141 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
7820157 ACGAACAT-AACGAAC
1 ACGAACATAAACGAAC
*
7820172 ACGAACAT-AATGAAC
1 ACGAACATAAACGAAC
7820187 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
7820203 A
1 A
7820204 TAAACGTTGG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
15 29 0.66
16 15 0.34
ACGTcount: A:0.56, C:0.24, G:0.13, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:7820968 original size:14 final size:14
Alignment explanation
Indices: 7820951--7821006 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
7820941 AATGAACATA
7820951 AACGAACATAATCG
1 AACGAACATAATCG
7820965 AACGAACAT-A---
1 AACGAACATAATCG
* *
7820975 AACAAACATAACCG
1 AACGAACATAATCG
7820989 AACGAACATAATCG
1 AACGAACATAATCG
7821003 AACG
1 AACG
7821007 TTCACGAACG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 8 0.23
11 1 0.03
13 1 0.03
14 25 0.71
ACGTcount: A:0.54, C:0.23, G:0.12, T:0.11
Consensus pattern (14 bp):
AACGAACATAATCG
Found at i:7820971 original size:24 final size:24
Alignment explanation
Indices: 7820931--7821005 Score: 98
Period size: 24 Copynumber: 3.1 Consensus size: 24
7820921 GATTGAGTTA
*
7820931 AACATAAAT-GAATGAACATAAACG
1 AACAT-AATCGAACGAACATAAACG
*
7820955 AACATAATCGAACGAACATAAACA
1 AACATAATCGAACGAACATAAACG
* *
7820979 AACATAACCGAACGAACATAATCG
1 AACATAATCGAACGAACATAAACG
7821003 AAC
1 AAC
7821006 GTTCACGAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
23 3 0.07
24 42 0.93
ACGTcount: A:0.56, C:0.20, G:0.11, T:0.13
Consensus pattern (24 bp):
AACATAATCGAACGAACATAAACG
Found at i:7823385 original size:5 final size:5
Alignment explanation
Indices: 7823366--7823584 Score: 301
Period size: 5 Copynumber: 43.6 Consensus size: 5
7823356 TCCACGTAAC
7823366 TAATA T-ATAA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
7823416 -ATATA TAATATA TAATA TAATA T-ATA TAATA TAATA -AATA TAATA
1 TA-ATA T-A-ATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
7823461 TAATA T-ATA TAAATA TAATA TAATA TAATA TAATAA TATATA TAA-A
1 TAATA TAATA T-AATA TAATA TAATA TAATA TAAT-A TA-ATA TAATA
7823507 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA T-A-ATA TAATA TAATA
7823559 T-ATA TAATA TAATA TAATA -AATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAA
7823585 CTAGCCCAAT
Statistics
Matches: 198, Mismatches: 0, Indels: 32
0.86 0.00 0.14
Matches are distributed among these distances:
4 27 0.14
5 144 0.73
6 15 0.08
7 12 0.06
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:7823516 original size:121 final size:120
Alignment explanation
Indices: 7823366--7823584 Score: 381
Period size: 121 Copynumber: 1.8 Consensus size: 120
7823356 TCCACGTAAC
7823366 TAATATATAATAATATAATATAATATAATATAATATAATATAATATAATA-ATATATAATATATA
1 TAATATATAATAATATAATATAATATAATATAATATAATATAATATAATATA-ATATAATATATA
7823430 ATATAATATATATAATATAATA-AATATAATATAATATATATAAATATAATATAATA
65 ATATAATATATATAATATAATATAATA-AATATAATATATATAAATATAATATAATA
7823486 TAATATAATAATATATATAA-ATAATATAATATAATATAATATAATATAATATAATATAATATAT
1 TAATAT-ATAATA-ATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAT
7823550 AATATAATATATATAATATAATATAATAAATATAA
64 AATATAATATATATAATATAATATAATAAATATAA
7823585 CTAGCCCAAT
Statistics
Matches: 95, Mismatches: 0, Indels: 7
0.93 0.00 0.07
Matches are distributed among these distances:
120 6 0.06
121 78 0.82
122 11 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (120 bp):
TAATATATAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATATAA
TATAATATATATAATATAATATAATAAATATAATATATATAAATATAATATAATA
Found at i:7825831 original size:10 final size:10
Alignment explanation
Indices: 7825816--7825868 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
7825806 ATTTAATAAT
7825816 TAAACGAACA
1 TAAACGAACA
7825826 TAAACGAAC-
1 TAAACGAACA
7825835 ---ACGAACA
1 TAAACGAACA
*
7825842 TAAATGAACA
1 TAAACGAACA
*
7825852 CGAAACGAACA
1 -TAAACGAACA
7825863 TAAACG
1 TAAACG
7825869 TTGGAGACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
6 6 0.18
10 20 0.59
11 8 0.24
ACGTcount: A:0.57, C:0.21, G:0.13, T:0.09
Consensus pattern (10 bp):
TAAACGAACA
Found at i:7825840 original size:16 final size:16
Alignment explanation
Indices: 7825819--7825855 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7825809 TAATAATTAA
7825819 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
7825835 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
7825851 ACGAA
1 ACGAA
7825856 ACGAACATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.57, C:0.22, G:0.14, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:7826625 original size:14 final size:14
Alignment explanation
Indices: 7826608--7826666 Score: 65
Period size: 14 Copynumber: 4.6 Consensus size: 14
7826598 GATTGGGTTA
7826608 AACATAAATGAACG
1 AACATAAATGAACG
7826622 AACATAAATGAACG
1 AACATAAATGAACG
7826636 AAC---AA--AACG
1 AACATAAATGAACG
**
7826645 AACATAACCGAACG
1 AACATAAATGAACG
7826659 AACATAAA
1 AACATAAA
7826667 CGAATGTTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
9 7 0.18
11 2 0.05
12 1 0.03
14 28 0.74
ACGTcount: A:0.59, C:0.19, G:0.12, T:0.10
Consensus pattern (14 bp):
AACATAAATGAACG
Found at i:7826644 original size:23 final size:24
Alignment explanation
Indices: 7826618--7826670 Score: 81
Period size: 23 Copynumber: 2.2 Consensus size: 24
7826608 AACATAAATG
*
7826618 AACGAACATAAATGAACGAACA-A
1 AACGAACATAAACGAACGAACATA
*
7826641 AACGAACATAACCGAACGAACATA
1 AACGAACATAAACGAACGAACATA
7826665 AACGAA
1 AACGAA
7826671 TGTTCACGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.58, C:0.21, G:0.13, T:0.08
Consensus pattern (24 bp):
AACGAACATAAACGAACGAACATA
Found at i:7827822 original size:20 final size:20
Alignment explanation
Indices: 7827797--7827909 Score: 104
Period size: 20 Copynumber: 5.7 Consensus size: 20
7827787 AATTTGGAAA
*
7827797 ATCGCAACGCGATATTGACT
1 ATCGCAACGCGATACTGACT
* *
7827817 ATCGC-ACGCGATAAT-ACAA
1 ATCGCAACGCGATACTGAC-T
*
7827836 ATCGCAACTCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
7827856 TTCGCAACGCGATACTTAAT
1 ATCGCAACGCGATACTGACT
* *
7827876 TTCGCAACGCAATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7827896 TTCGCAACGAGATA
1 ATCGCAACGCGATA
7827910 ATACATAATC
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
18 2 0.03
19 14 0.18
20 58 0.76
21 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:7827881 original size:40 final size:40
Alignment explanation
Indices: 7827795--7827923 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
7827785 CGAATTTGGA
* *
7827795 AAATCGCAACGCGATATTGACTATCGC-ACGCGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
* *
7827834 AAATCGCAACTCGATACTGACTTTCGCAACGCGATACTTA-
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATA-ATAC
** * *
7827874 ATTTCGCAACGCAATACTGACTTTCGCAACGAGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
7827914 ATAATCGCAA
1 A-AATCGCAA
7827924 TGGGATTTCA
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
39 26 0.35
40 40 0.54
41 8 0.11
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (40 bp):
AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:7828124 original size:22 final size:22
Alignment explanation
Indices: 7828096--7828139 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7828086 CACTCTCTCA
7828096 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
7828118 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
7828140 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:7828208 original size:33 final size:33
Alignment explanation
Indices: 7828162--7828228 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 33
7828152 TCAGAGCCAC
7828162 CTCACAACAGAAATGGAAAATC-ACCAAATCAA
1 CTCACAACAGAAATGGAAAATCAACCAAATCAA
7828194 CTCACAATCAGAAATGGAAAATCAACCAAATCAA
1 CTCACAA-CAGAAATGGAAAATCAACCAAATCAA
7828228 C
1 C
7828229 CACCGAGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 7 0.21
33 15 0.45
34 11 0.33
ACGTcount: A:0.52, C:0.25, G:0.09, T:0.13
Consensus pattern (33 bp):
CTCACAACAGAAATGGAAAATCAACCAAATCAA
Found at i:7828677 original size:25 final size:24
Alignment explanation
Indices: 7828623--7828677 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
7828613 TTTTATATTG
* *
7828623 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
7828647 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
7828673 TGTTT
1 TGTTT
7828678 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:7830541 original size:183 final size:177
Alignment explanation
Indices: 7830189--7830548 Score: 625
Period size: 183 Copynumber: 2.0 Consensus size: 177
7830179 TAATTTCACT
7830189 TAGATTACCATTTCACTTAGATTGCTTAATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTG
1 TAGATTACCATTTCACTTAGATTGCTTAATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTG
7830254 TTTTGTTGTAGTTTTGTTTTGGTTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCA
66 TTTTGTTGTAGTTTTGTTTTGGTTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCA
*
7830319 ATTTGTAGAAGAAAATAGTTTTACTTTCGCAACCGAAAATGACTATC
131 ATTTGTAGAAGAAAATAGTTTTACTTTCGCAAACGAAAATGACTATC
7830366 TAGATTAACCATTTCACTTAGATTGCTTAATAAATTCATTCGGTTGCTGCCAATACTGCTAAACT
1 TAGATT-ACCATTTCACTTAGATTGCTTAATAAATTCATTCGGTTGCTGCCAATACTGCTAAACT
7830431 GTTTTTGTTAGTATTTGTTTTGGTTTT-GTTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCA
65 G-TTTTGTT-GTA---GTTTT-GTTTTGGTTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCA
7830495 AGTTTCAATTTGTAGAAGAAGAATAG-TTTACTTTCGCAAACGAAAATGACTATC
124 AGTTTCAATTTGTAGAAGAA-AATAGTTTTACTTTCGCAAACGAAAATGACTATC
7830549 GCAACGCGGA
Statistics
Matches: 174, Mismatches: 1, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
177 6 0.03
178 59 0.34
179 7 0.04
180 3 0.02
183 89 0.51
184 10 0.06
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (177 bp):
TAGATTACCATTTCACTTAGATTGCTTAATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTG
TTTTGTTGTAGTTTTGTTTTGGTTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCA
ATTTGTAGAAGAAAATAGTTTTACTTTCGCAAACGAAAATGACTATC
Found at i:7830581 original size:19 final size:20
Alignment explanation
Indices: 7830538--7830593 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
7830528 TCGCAAACGA
7830538 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAACGCGG
* *
7830558 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
7830577 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
7830594 ACAAAATCGC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:7830608 original size:33 final size:34
Alignment explanation
Indices: 7830566--7830658 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 34
7830556 GGAAATGGCT
7830566 ATCGCAATGCGAAATGAAAATCGCAACGAC-AAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAA
*
7830599 ATCGCAATGCGAAATGAAAATTGCAACGACAAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAA
*
7830633 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
7830659 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 29 0.52
34 27 0.48
ACGTcount: A:0.48, C:0.20, G:0.18, T:0.13
Consensus pattern (34 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAAA
Found at i:7830624 original size:19 final size:19
Alignment explanation
Indices: 7830566--7830663 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
7830556 GGAAATGGCT
7830566 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7830585 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
7830599 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
7830618 ATTGCAA--CGACA--AAA
1 ATCGCAATGCGAAATGAAA
*
7830633 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7830652 ATCGCAATGCGA
1 ATCGCAATGCGA
7830664 TTTGTGTTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
14 10 0.16
15 10 0.16
16 2 0.03
17 10 0.16
18 1 0.02
19 30 0.48
ACGTcount: A:0.47, C:0.20, G:0.19, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7830694 original size:14 final size:14
Alignment explanation
Indices: 7830675--7830732 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
7830665 TTGTGTTTCG
7830675 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
7830689 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
*
7830705 CGCATTGTGATTTTGT
1 CG--TTGCGATTTTGT
7830721 CGTTGCGATTTT
1 CGTTGCGATTTT
7830733 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7830717 original size:32 final size:33
Alignment explanation
Indices: 7830670--7830748 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
7830660 GCGATTTGTG
*
7830670 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
7830702 TTTCGCATTGTGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
7830735 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
7830749 AGCCATTTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
32 25 0.58
33 18 0.42
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:7830747 original size:19 final size:18
Alignment explanation
Indices: 7830691--7830748 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
7830681 GATTTTGTCG
7830691 TTGCGATTTCATTTCGCA
1 TTGCGATTTCATTTCGCA
* *
7830709 TTGTGATTT--TGTCG--
1 TTGCGATTTCATTTCGCA
7830723 TTGCGATTTTCATTTCGCA
1 TTGCGA-TTTCATTTCGCA
7830742 TTGCGAT
1 TTGCGAT
7830749 AGCCATTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
14 5 0.16
15 3 0.10
16 4 0.13
17 4 0.13
18 9 0.29
19 6 0.19
ACGTcount: A:0.14, C:0.17, G:0.21, T:0.48
Consensus pattern (18 bp):
TTGCGATTTCATTTCGCA
Found at i:7832749 original size:14 final size:15
Alignment explanation
Indices: 7832732--7832802 Score: 56
Period size: 18 Copynumber: 4.5 Consensus size: 15
7832722 CAAACAGACT
7832732 ATCGCAACGAGA-AA
1 ATCGCAACGAGAGAA
*
7832746 ATCGCAATGAGAAATGAA
1 ATCGCAACGAG--A-GAA
*
7832764 ATCGCAATGCGAAATGAA
1 ATCGCAA--CGAGA-GAA
7832782 ATCGCAACGAGA-AA
1 ATCGCAACGAGAGAA
7832796 ATCGCAA
1 ATCGCAA
7832803 TGCGATTTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
14 19 0.40
16 5 0.11
18 21 0.45
20 2 0.04
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.13
Consensus pattern (15 bp):
ATCGCAACGAGAGAA
Found at i:7832767 original size:18 final size:18
Alignment explanation
Indices: 7832744--7832795 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
7832734 CGCAACGAGA
7832744 AAATCGCAATGAGAAATG
1 AAATCGCAATGAGAAATG
*
7832762 AAATCGCAATGCGAAATG
1 AAATCGCAATGAGAAATG
*
7832780 AAATCGCAACGAGAAA
1 AAATCGCAATGAGAAA
7832796 ATCGCAATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.50, C:0.15, G:0.21, T:0.13
Consensus pattern (18 bp):
AAATCGCAATGAGAAATG
Found at i:7832851 original size:20 final size:20
Alignment explanation
Indices: 7832834--7832921 Score: 115
Period size: 20 Copynumber: 4.4 Consensus size: 20
7832824 CGATTTTCTA
7832834 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
*** *
7832854 GTTGCGATTTTTCA-TTTCGA
1 GTTGCGA-TAGCCATTTTCGC
*
7832874 ATTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
7832894 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
7832914 GTTGCGAT
1 GTTGCGAT
7832922 TTCCCCGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 3 0.05
20 50 0.89
21 3 0.05
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:7832859 original size:34 final size:36
Alignment explanation
Indices: 7832814--7832901 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 36
7832804 GCGATTTTCA
* *
7832814 TTTCGCATTGCGATTTTC-T-AGTTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
7832848 TTTCGCGTTGCGATTTTTCATTTCGAATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC--TTC-AATTGCGATAGCCAT
7832888 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
7832902 AGCCATTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 12 0.26
35 5 0.11
38 1 0.02
39 1 0.02
40 27 0.59
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (36 bp):
TTTCGCGTTGCGATTTTCTTCAATTGCGATAGCCAT
Found at i:7833154 original size:19 final size:19
Alignment explanation
Indices: 7833130--7833177 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
7833120 TTGAAGATGA
7833130 TTGCGATTTCAGAATCTCG
1 TTGCGATTTCAGAATCTCG
**
7833149 TTGCGAAAGTCAGAATCTCG
1 TTGCG-ATTTCAGAATCTCG
7833169 TTGCGATTT
1 TTGCGATTT
7833178 TGTATTATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (19 bp):
TTGCGATTTCAGAATCTCG
Found at i:7833249 original size:20 final size:21
Alignment explanation
Indices: 7833205--7833256 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
7833195 ATAGTCAGTA
*
7833205 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
7833226 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
7833246 TCGCATTGCGA
1 TCGCATTGCGA
7833257 ATTAGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:7833467 original size:12 final size:12
Alignment explanation
Indices: 7833448--7833481 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7833438 CTCTCTCGCA
7833448 ACATCCGTTCCT
1 ACATCCGTTCCT
*
7833460 ATATCCGTTCCT
1 ACATCCGTTCCT
7833472 ACATCC-TTCC
1 ACATCCGTTCC
7833482 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:7833971 original size:23 final size:23
Alignment explanation
Indices: 7833925--7833977 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
7833915 AGTATTGAAA
*
7833925 ATTTGATCTTGGTCAATACCTGG
1 ATTTGATATTGGTCAATACCTGG
*
7833948 ACTTTGATATTGGTC-ATACTTGG
1 A-TTTGATATTGGTCAATACCTGG
7833971 ATTTGAT
1 ATTTGAT
7833978 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 6 0.22
23 9 0.33
24 12 0.44
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.43
Consensus pattern (23 bp):
ATTTGATATTGGTCAATACCTGG
Found at i:7834170 original size:12 final size:12
Alignment explanation
Indices: 7834153--7834186 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7834143 ATATAATCCC
7834153 GAAGAAAAAGAA
1 GAAGAAAAAGAA
*
7834165 GAAGAAAAAGAT
1 GAAGAAAAAGAA
7834177 GAAGAAAAAG
1 GAAGAAAAAG
7834187 TCCCCGAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (12 bp):
GAAGAAAAAGAA
Found at i:7836492 original size:33 final size:33
Alignment explanation
Indices: 7836450--7836543 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
7836440 GGAAATTACT
*
7836450 ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
7836483 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
7836516 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
7836544 CGAATTTTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:7836546 original size:19 final size:19
Alignment explanation
Indices: 7836450--7836547 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
7836440 GGAAATTACT
*
7836450 ATCGCAATGCAAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7836469 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
7836483 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
7836502 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
7836516 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7836535 ATCGCAACGCGAA
1 ATCGCAATGCGAA
7836548 TTTTATTTCG
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
14 19 0.31
15 2 0.03
16 4 0.07
17 3 0.05
18 2 0.03
19 31 0.51
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7836575 original size:14 final size:14
Alignment explanation
Indices: 7836558--7836614 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
7836548 TTTTATTTCG
7836558 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
7836572 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
7836591 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
7836605 CGTTGCGATT
1 CGTTGCGATT
7836615 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:7836589 original size:33 final size:33
Alignment explanation
Indices: 7836547--7836632 Score: 156
Period size: 33 Copynumber: 2.6 Consensus size: 33
7836537 CGCAACGCGA
7836547 ATTTT-ATTTCGCGTTGCGATTCTCTCGTTGCG
1 ATTTTCATTTCGCGTTGCGATTCTCTCGTTGCG
7836579 ATTTTCATTTCGCGTTGCGATTCTCTCGTTGCG
1 ATTTTCATTTCGCGTTGCGATTCTCTCGTTGCG
*
7836612 ATTTTCATTTCGCATTGCGAT
1 ATTTTCATTTCGCGTTGCGAT
7836633 AGTGCTTTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 5 0.10
33 47 0.90
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.47
Consensus pattern (33 bp):
ATTTTCATTTCGCGTTGCGATTCTCTCGTTGCG
Found at i:7836596 original size:19 final size:19
Alignment explanation
Indices: 7836572--7836632 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
7836562 GCGATTCTCT
7836572 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
7836591 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
7836605 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
7836624 CATTGCGAT
1 CGTTGCGAT
7836633 AGTGCTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 10 0.29
16 3 0.09
17 3 0.09
19 18 0.53
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:7838176 original size:42 final size:42
Alignment explanation
Indices: 7838091--7838184 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
7838081 GTGAATCGGG
* *
7838091 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
* * *
7838133 CTCTTGAACGGTGGGATGGGA-CTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACCTCTTCAACG-ATGACAGGGGC
*
7838175 CTCTTTAACG
1 CTCTTGAACG
7838185 ATAGGAGTGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
41 4 0.09
42 36 0.82
43 4 0.09
ACGTcount: A:0.21, C:0.20, G:0.34, T:0.24
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGACAGGGGC
Found at i:7838545 original size:92 final size:89
Alignment explanation
Indices: 7838430--7838611 Score: 303
Period size: 89 Copynumber: 2.0 Consensus size: 89
7838420 ATTTCAAACT
*
7838430 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAGAATACACAGTTTAGCA
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT---AATAAACAGTTTAGCA
7838495 GAATTGGCAGCAACCGAATAAATTTAC
63 GAATTGGCAGCAACCGAATAAATTTAC
*
7838522 TTCAACCAAAAGAC-AAACAAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGT
1 TTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGA
7838586 ATTGGCAGCAACCGAATAAATTTAC
65 ATTGGCAGCAACCGAATAAATTTAC
7838611 T
1 T
7838612 AAGCAATCTA
Statistics
Matches: 87, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
89 42 0.48
91 4 0.05
92 41 0.47
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (89 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAATAAACAGTTTAGCAGAA
TTGGCAGCAACCGAATAAATTTAC
Found at i:7840342 original size:19 final size:19
Alignment explanation
Indices: 7840278--7840409 Score: 132
Period size: 19 Copynumber: 7.1 Consensus size: 19
7840268 TCTTTTGGTT
*
7840278 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
7840297 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
7840317 GGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
*
7840337 GAAATGAAAATCGCAACAC
1 GAAATGAAAATCGCAACGC
7840356 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
7840373 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
7840389 GAAACT-AAAATCGCAATGC
1 GAAA-TGAAAATCGCAACGC
7840408 GA
1 GA
7840410 TTTTAGTTTC
Statistics
Matches: 95, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 47 0.49
20 30 0.32
21 2 0.02
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:7840392 original size:33 final size:36
Alignment explanation
Indices: 7840278--7840404 Score: 118
Period size: 33 Copynumber: 3.4 Consensus size: 36
7840268 TCTTTTGGTT
*
7840278 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAAC-CG--AATGAGAATCGCAACGC
** * *
7840317 GGAAATGACTATCGCAACGCGAAATGAAAATCGCAACAC
1 -GAAATGAAAATCGCAAC-CG-AATGAGAATCGCAACGC
7840356 GAAATGAAAATCGCAA-CG-A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACCGAATGAGAATCGCAACGC
7840389 GAAACT-AAAATCGCAA
1 GAAA-TGAAAATCGCAA
7840405 TGCGATTTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
33 26 0.34
34 2 0.03
36 2 0.03
38 14 0.18
39 15 0.20
40 17 0.22
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.12
Consensus pattern (36 bp):
GAAATGAAAATCGCAACCGAATGAGAATCGCAACGC
Found at i:7840438 original size:19 final size:21
Alignment explanation
Indices: 7840405--7840452 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
7840395 AAAATCGCAA
7840405 TGCGA-TTTTAGTTT-CGCGT
1 TGCGATTTTTAGTTTCCGCGT
7840424 TGCGATTTTTA-TTTCCGCGT
1 TGCGATTTTTAGTTTCCGCGT
7840444 TGCGATTTT
1 TGCGATTTT
7840453 CATTCTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.10, C:0.17, G:0.23, T:0.50
Consensus pattern (21 bp):
TGCGATTTTTAGTTTCCGCGT
Found at i:7840992 original size:20 final size:20
Alignment explanation
Indices: 7840967--7841078 Score: 73
Period size: 20 Copynumber: 5.5 Consensus size: 20
7840957 GCTATGTAAA
7840967 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-GTAAGTAT
* *
7840987 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATGTAAGTAT
* ***
7841007 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATGTAAGT-AT
* ** *
7841028 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATGTAAGTAT
* * * *
7841048 TCGCGTTGCGATTTACGTGT
1 TCGCATTGCGATGTAAGTAT
7841068 TCGCATTGCGA
1 TCGCATTGCGA
7841079 ATTATGAAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
19 3 0.04
20 57 0.73
21 18 0.23
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATGTAAGTAT
Found at i:7841037 original size:41 final size:40
Alignment explanation
Indices: 7840985--7841078 Score: 125
Period size: 41 Copynumber: 2.3 Consensus size: 40
7840975 CGATAGTAAG
* *
7840985 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* * *
7841025 AATTCGCATTGCGATTTACTTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
*
7841066 GTTCGCATTGCGA
1 ATTCGCATTGCGA
7841079 ATTATGAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 12 0.26
41 35 0.74
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.39
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
Found at i:7841099 original size:21 final size:21
Alignment explanation
Indices: 7841075--7841130 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
7841065 TGTTCGCATT
*
7841075 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
7841096 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
* *
7841116 GCAAATTAGGAAAAT
1 GCGAATTACGAAAAT
7841131 TGCATTGCGA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:7841243 original size:21 final size:22
Alignment explanation
Indices: 7841191--7841243 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
7841181 ATTTATTTAT
*
7841191 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGAAAAA
**
7841212 TCGCAACGCGAAATT-GAAAAA
1 TCGCATTGCGAAATTGGAAAAA
7841233 TCGCATTGCGA
1 TCGCATTGCGA
7841244 TAGTCATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGAAAAA
Found at i:7846116 original size:18 final size:20
Alignment explanation
Indices: 7846079--7846116 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7846069 TTTAATAAAT
*
7846079 TATTGTATTTTTAATTTGAA
1 TATTGTATTTTTAATATGAA
7846099 TATT-TATTTTT-ATATGAA
1 TATTGTATTTTTAATATGAA
7846117 CCAAAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.61
Consensus pattern (20 bp):
TATTGTATTTTTAATATGAA
Found at i:7850954 original size:68 final size:68
Alignment explanation
Indices: 7850870--7851004 Score: 270
Period size: 68 Copynumber: 2.0 Consensus size: 68
7850860 ATATATTCAT
7850870 GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
1 GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
7850935 AAA
66 AAA
7850938 GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
1 GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
7851003 AA
66 AA
7851005 TCTATTCACA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (68 bp):
GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
AAA
Found at i:7851044 original size:68 final size:67
Alignment explanation
Indices: 7850879--7851020 Score: 187
Period size: 68 Copynumber: 2.1 Consensus size: 67
7850869 TGTATTCATG
* * *
7850879 TCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTGAAAGTATTC
1 TCATATCTCTTGTAATCATATAAC-CATATCACTTACCATGTAACATGTGCATTTGAAACTATTC
**
7850944 ATG
65 ACA
* * *
7850947 TCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTGAATCTATTC
1 TCATATCTCTTGTAATCATATAAC-CATATCACTTACCATGTAACATGTGCATTTGAAACTATTC
7851012 ACA
65 ACA
7851015 T-ATATC
1 TCATATC
7851021 ATTTATTAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
67 4 0.06
68 65 0.94
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (67 bp):
TCATATCTCTTGTAATCATATAACCATATCACTTACCATGTAACATGTGCATTTGAAACTATTCA
CA
Found at i:7855420 original size:68 final size:68
Alignment explanation
Indices: 7855331--7855465 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
7855321 ATATATTCAT
* * *
7855331 GTATTCATGTCATTTCTCTTGTGATCATATAACTCATATCATTTACCATGTAACATATGTATTTG
1 GTATACATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATATGCATTTG
7855396 AAA
66 AAA
*
7855399 GTATACATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATGTGCATTTG
1 GTATACATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATATGCATTTG
7855464 AA
66 AA
7855466 TCTATTTACA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (68 bp):
GTATACATGTCATTTCTCTTGTGATCATATAACTCATATCACTTACCATGTAACATATGCATTTG
AAA
Found at i:7857391 original size:22 final size:22
Alignment explanation
Indices: 7857366--7857413 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
7857356 CGCTGAATAT
7857366 TGAACGGTTCAACATTCAACGA
1 TGAACGGTTCAACATTCAACGA
*
7857388 TGAACGGTTCAGCATTCAACGA
1 TGAACGGTTCAACATTCAACGA
7857410 TGAA
1 TGAA
7857414 TGATTCCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (22 bp):
TGAACGGTTCAACATTCAACGA
Found at i:7858549 original size:24 final size:23
Alignment explanation
Indices: 7858514--7858559 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7858504 GATAAAATGT
7858514 AACTTCTACACAAATAAAATTATA
1 AACTTCTACAC-AATAAAATTATA
*
7858538 AACTCTCT-CACATTAAAATTAT
1 AACT-TCTACACAATAAAATTAT
7858560 TGATTGCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 10 0.50
24 7 0.35
25 3 0.15
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (23 bp):
AACTTCTACACAATAAAATTATA
Found at i:7864840 original size:2 final size:2
Alignment explanation
Indices: 7864833--7864859 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7864823 ATACAAGATT
7864833 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7864860 TTTGTTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7865980 original size:35 final size:35
Alignment explanation
Indices: 7865925--7866020 Score: 120
Period size: 35 Copynumber: 2.6 Consensus size: 35
7865915 GTCCTATTAG
*
7865925 GATTCAAACTCTCAAAAATAGGATAGAATTCTGCTAT
1 GATTC-AACTC-CTAAAATAGGATAGAATTCTGCTAT
*
7865962 GATTCAACTCCTAAAATAGGATAGAATTTTGCTAT
1 GATTCAACTCCTAAAATAGGATAGAATTCTGCTAT
* *
7865997 GTTTTAAACTCCTAAAGATAGGAT
1 G-ATTCAACTCCTAAA-ATAGGAT
7866021 CCACAAGAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
35 24 0.45
36 17 0.32
37 12 0.23
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (35 bp):
GATTCAACTCCTAAAATAGGATAGAATTCTGCTAT
Found at i:7866404 original size:18 final size:17
Alignment explanation
Indices: 7866365--7866407 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7866355 ATTATATGGA
7866365 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
7866381 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
7866399 TATTATTAT
1 TATTATTAT
7866408 GTATATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:7866426 original size:58 final size:54
Alignment explanation
Indices: 7866364--7866486 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 54
7866354 TATTATATGG
* * *
7866364 ATATTTTA-TTCATTTATTTTTATTATTCATGTTATTATTATTATGTATATATATATAT
1 ATATTTTATTTCATTTATTTTTACTA-T-A--TT-TTACTATTATATATATATATATAT
7866422 ATATTAAATTATTTTCATTTATTTTTACTATATTTTACTATTATATATATATATATAT
1 ATATT---TTA-TTTCATTTATTTTTACTATATTTTACTATTATATATATATATATAT
7866480 ATATTTT
1 ATATTTT
7866487 CTTTAATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
55 2 0.04
58 32 0.56
59 2 0.04
61 4 0.07
62 1 0.02
63 16 0.28
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (54 bp):
ATATTTTATTTCATTTATTTTTACTATATTTTACTATTATATATATATATATAT
Found at i:7866909 original size:2 final size:2
Alignment explanation
Indices: 7866902--7866935 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7866892 TAATACTTTG
*
7866902 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7866936 TTTTCCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7870695 original size:22 final size:23
Alignment explanation
Indices: 7870670--7870724 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
7870660 CAAGAACGAA
7870670 AAAGAAAAGA-AGAAAAAAAAAC
1 AAAGAAAAGAGAGAAAAAAAAAC
* *
7870692 AAAGAAAA-AGAGAAACAAGAAC
1 AAAGAAAAGAGAGAAAAAAAAAC
*
7870714 AAAAAAAAGAG
1 AAAGAAAAGAG
7870725 CAAAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 25 0.89
23 2 0.07
ACGTcount: A:0.78, C:0.05, G:0.16, T:0.00
Consensus pattern (23 bp):
AAAGAAAAGAGAGAAAAAAAAAC
Found at i:7870735 original size:19 final size:19
Alignment explanation
Indices: 7870674--7870737 Score: 65
Period size: 21 Copynumber: 3.2 Consensus size: 19
7870664 AACGAAAAAG
* *
7870674 AAAAGAAGAAAAAAAAACA
1 AAAAAAAGAGAAAAAAACA
7870693 AAGAAAAAGAGAAACAAGAACA
1 AA-AAAAAGAGAAA-AA-AACA
* *
7870715 AAAAAAAGAGCAAAAATCA
1 AAAAAAAGAGAAAAAAACA
7870734 AAAA
1 AAAA
7870738 GAAAAAGGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 9 0.24
20 11 0.29
21 12 0.32
22 6 0.16
ACGTcount: A:0.78, C:0.08, G:0.12, T:0.02
Consensus pattern (19 bp):
AAAAAAAGAGAAAAAAACA
Found at i:7871401 original size:22 final size:22
Alignment explanation
Indices: 7871373--7871423 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
7871363 TCCCATCAAT
7871373 CCTTTGAGCATCAAATACCAAA
1 CCTTTGAGCATCAAATACCAAA
*
7871395 CCTTTGAGCATCAAATGCCAAA
1 CCTTTGAGCATCAAATACCAAA
7871417 CCTTTGA
1 CCTTTGA
7871424 CCAAACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (22 bp):
CCTTTGAGCATCAAATACCAAA
Found at i:7872263 original size:36 final size:37
Alignment explanation
Indices: 7872216--7872320 Score: 158
Period size: 36 Copynumber: 2.9 Consensus size: 37
7872206 GTGCTCACCA
*
7872216 TTGTCTCTCTTGAGACAGTTTCCCTTAAAACAAA-CT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
*
7872252 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
* * *
7872289 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
7872321 TAAACATTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
36 33 0.52
37 30 0.48
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (37 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATCT
Found at i:7872411 original size:37 final size:37
Alignment explanation
Indices: 7872352--7872422 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
7872342 TTGAAATGAG
7872352 TTTTGTCTCTC-TTGAGATAGTTTCCCTTGAAACAAAA
1 TTTTGTCTC-CATTGAGATAGTTTCCCTTGAAACAAAA
* * *
7872389 TTCTGTCACCATTGAGATAGTTTCTCTTGAAACA
1 TTTTGTCTCCATTGAGATAGTTTCCCTTGAAACA
7872423 TAAACATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 1 0.03
37 29 0.97
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
TTTTGTCTCCATTGAGATAGTTTCCCTTGAAACAAAA
Found at i:7872411 original size:102 final size:102
Alignment explanation
Indices: 7872251--7872691 Score: 783
Period size: 102 Copynumber: 4.3 Consensus size: 102
7872241 TAAAACAAAC
* * *
7872251 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTTTTCTCCCTTGAGACAGTTTCTCTTG
1 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
*
7872316 AAACATAAACATTGAAAACATTTCCCTTGAAATGAGT
66 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
* * * *
7872353 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCTGTCACCATTGAGATAGTTTCTCTTG
1 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
*
7872418 AAACATAAACATTGGAAACATTTCCCTTGAAATGAAT
66 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
7872455 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
7872520 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
66 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
7872557 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
1 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
7872622 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
66 AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
* *
7872659 TTCGTCTCTCTTGAGATAGTTTCTCTTGAAACA
1 TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA
7872692 TAAACATTGA
Statistics
Matches: 323, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 323 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (102 bp):
TTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTG
AAACATAAACATTGAAAACATTTCCCTTGAAATGAAT
Found at i:7872505 original size:37 final size:37
Alignment explanation
Indices: 7872438--7872524 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
7872428 ATTGGAAACA
** * *
7872438 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
7872474 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
7872511 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
7872525 TAAACATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 33 0.73
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:7872607 original size:37 final size:37
Alignment explanation
Indices: 7872540--7872626 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
7872530 ATTGAAAACA
** * *
7872540 TTTCCCTTGAAA-TGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
7872576 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
7872613 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
7872627 TAAACATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 33 0.73
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:7872681 original size:65 final size:65
Alignment explanation
Indices: 7872576--7872756 Score: 308
Period size: 65 Copynumber: 2.8 Consensus size: 65
7872566 CTTGAGATAG
** * *
7872576 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAA-TGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
7872641 A
65 A
*
7872642 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAACA
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
7872707 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA
7872757 AAATTTTGTC
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
65 97 0.89
66 12 0.11
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (65 bp):
TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:7872780 original size:167 final size:168
Alignment explanation
Indices: 7872474--7872782 Score: 539
Period size: 167 Copynumber: 1.8 Consensus size: 168
7872464 CTTGAGATAG
*
7872474 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
* *
7872539 ATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCC
66 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
7872604 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
131 TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
** * *
7872642 TTTCCCTTGAAA-TGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAAC
1 TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
*
7872706 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAATTTTGTCTCCC
66 ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
7872771 TTGAGACAGTTT
131 TTGAGACAGTTT
7872783 TCAATTGAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
167 121 0.91
168 12 0.09
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (168 bp):
TTTCCCTTGAAACAAAATTTCGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAAC
ATTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAATTTTGTCTCCC
TTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:7873639 original size:203 final size:205
Alignment explanation
Indices: 7873281--7874249 Score: 1046
Period size: 203 Copynumber: 4.7 Consensus size: 205
7873271 TTAGCTAGAG
* * * *
7873281 TCAATTTCGACTTCACAGAGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 TCAATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAA
* *
7873346 GGGACGGCTGGTTGTCAACAATAATTTCCCAGTTTCAGGGCCAATTTCAACTTCACAGTGAAGGA
66 GGGACGGCTGGTTGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGA
* * * * *
7873411 TATTGGACCCAAGGCAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACAAACAA
131 TATTGGACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAA
*
7873476 TTTTGGAG-C
196 TTTTGCAGTC
7873485 T-AATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 TCAATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAA
* * * *
7873549 GGGACGG-TTGTATGTCAACAATAATTTCCCAGTTTCAGGGCTAATTTCAACTTCACAACGAAGG
66 GGGACGGCTGGT-TGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGG
** * * * *
7873613 ATATTGGACCCAAGACAGGACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACAAGCA
130 ATATTGGACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACA
* *
7873678 ATTTCGGAG-C
195 ATTTTGCAGTC
* *
7873688 -CAATCTCAACTTCACAGCGAATGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAA
1 TCAATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAA
* * * * *
7873752 GGGACGGCTGGTTGTCAACAAATAATTTCCCAATTCCAGAGCCGATTTCAACTCCAC-GACGGAG
66 GGGACGGCTGGTTGTCAAC-AATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAG-CGAAG
* * * ** *
7873816 GATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACG
129 GATAT--TG-GACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACA
*
7873881 AATAACTTTT-CAGTTTC
191 AACAA-TTTTGCAG--TC
* * * * *
7873898 ATCCGCGATTTCAACTCCAC-GACGGAGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTC
1 -T---CAATCTCAACTTCACAG-CGAAGGATAT--TG-AACTCGAGACAACACAAGTTCAACTTC
* * * *
7873962 ACAACGAAGGGACGGCTGGTTGTCAACAA-ACATTTTTCAAATTTCAGAGCCAATTTCAACTTCG
58 ACAACGAAGGGACGGCTGGTTGTCAACAATA-A-TTTCCCAGTTTCAGAGCCAATTTCAACTTCA
* * * *
7874026 CAGCGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGT
121 CAGCGAAGGATATTGGACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGT
* *
7874091 CAAC-AA-GATTTCGTTCAGAT-
186 CAACAAACAATTT--TGCAG-TC
* * * *
7874111 TCAATTTCAACTTCACAGCGAAGGATATT-AGACTCGAGACAGCACAAGCTCAACTTCACAGCGA
1 TCAATCTCAACTTCACAGCGAAGGATATTGA-ACTCGAGACAACACAAGTTCAACTTCACAACGA
* ** * * * * *
7874175 AGGGGCGGCTGACTGTCAACAAACAATTTCCCGGTTCCAGAACCAATTTCAACTTCACAGCGGAG
65 AGGGACGGCTGGTTGTCAAC-AATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAG
7874240 GATATTGGAC
129 GATATTGGAC
7874250 TCGGAACAAT
Statistics
Matches: 660, Mismatches: 74, Indels: 60
0.83 0.09 0.08
Matches are distributed among these distances:
202 3 0.00
203 261 0.40
204 44 0.07
206 90 0.14
207 53 0.08
208 4 0.01
209 22 0.03
210 2 0.00
212 4 0.01
213 1 0.00
214 5 0.01
215 74 0.11
216 3 0.00
217 5 0.01
218 88 0.13
219 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (205 bp):
TCAATCTCAACTTCACAGCGAAGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAA
GGGACGGCTGGTTGTCAACAATAATTTCCCAGTTTCAGAGCCAATTTCAACTTCACAGCGAAGGA
TATTGGACCCAAGACAACACAAGCTCAACTTCACAACGAAGGGACGGCTGACTGTCAACAAACAA
TTTTGCAGTC
Found at i:7873864 original size:109 final size:104
Alignment explanation
Indices: 7873302--7874252 Score: 740
Period size: 109 Copynumber: 9.1 Consensus size: 104
7873292 TTCACAGAGA
7873302 AGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-A
1 AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
* * * *
7873366 ATAATTTCCCAGTTTCAGGGCCAATTTCAACTTCAC-A-GTG
65 ACAATTT-CCAGTTCCAGAGCCAATTTCAACTCCACGACG-G
* * * * * * * ** *
7873406 AAGGATATTGGACCCAAGGCAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACA
1 -AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACA
* * * * *
7873471 AACAA-TT----TT--GGAGCTAATCTCAACTTCAC-AGCGA
64 AACAATTTCCAGTTCCAGAGCCAATTTCAACTCCACGA-CGG
*
7873505 AGGATATTGAACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGG-TTGTATGTCAAC-
1 AGGATATTG-ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGT-TGTCAACA
* * * * * * *
7873568 AATAATTTCCCAGTTTCAGGGCTAATTTCAACTTCACAACGA
64 AACAATTT-CCAGTTCCAGAGCCAATTTCAACTCCACGACGG
* * ** * * * ** *
7873610 AGGATATTGGACCCAAGACAGGACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCGACAA
1 AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
* * * *
7873675 GCAATTT-C-G-----GAGCCAATCTCAACTTCAC-AGCGA
65 ACAATTTCCAGTTCCAGAGCCAATTTCAACTCCACGA-CGG
*
7873708 ATGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
1 AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
* * *
7873773 ATAATTTCCCAATTCCAGAGCCGATTTCAACTCCACGACGG
65 ACAATTT-CCAGTTCCAGAGCCAATTTCAACTCCACGACGG
*
7873814 AGGATATCGTGCTACCCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA
1 AGGATAT--TG--ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA
* * * * ** *
7873879 CGAATAACTTTTCAGTTTCA-TCCGCGATTTCAACTCCACGACGG
62 CAAACAA-TTTCCAGTTCCAGAGC-CAATTTCAACTCCACGACGG
7873923 AGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA
1 AGGATAT--TG--ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA
* * * * *
7873988 CAAACATTTTTCAAATTTCAGAGCCAATTTCAACTTCGCA-G-CGA
62 CAAACA-ATTTCCAGTTCCAGAGCCAATTTCAAC-TC-CACGACGG
*
7874032 AGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAAC-A
1 AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
* ** * *
7874096 A-GATTT-C-GTT-CAGATTCAATTTCAACTTCAC-AGCGA
65 ACAATTTCCAGTTCCAGAGCCAATTTCAACTCCACGA-CGG
* * * * **
7874132 AGGATATTAGACTCGAGACAGCACAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAA
1 AGGATATT-GACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAA
* * *
7874197 ACAATTTCCCGGTTCCAGAACCAATTTCAACTTCAC-AGCGG
65 ACAATTT-CCAGTTCCAGAGCCAATTTCAACTCCACGA-CGG
7874238 AGGATATTGGACTCG
1 AGGATATT-GACTCG
7874253 GAACAATATT
Statistics
Matches: 695, Mismatches: 104, Indels: 93
0.78 0.12 0.10
Matches are distributed among these distances:
97 7 0.01
98 147 0.21
99 1 0.00
100 78 0.11
101 4 0.01
102 4 0.01
103 6 0.01
104 2 0.00
105 128 0.18
106 126 0.18
107 3 0.00
108 3 0.00
109 177 0.25
110 7 0.01
111 2 0.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (104 bp):
AGGATATTGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAA
CAATTTCCAGTTCCAGAGCCAATTTCAACTCCACGACGG
Found at i:7874772 original size:35 final size:35
Alignment explanation
Indices: 7874717--7874812 Score: 120
Period size: 35 Copynumber: 2.6 Consensus size: 35
7874707 GTCCTACTAG
*
7874717 GATTCAAACTCTCAAAAATAGGATAGAATTCTGCTAT
1 GATTC-AACTC-CTAAAATAGGATAGAATTCTGCTAT
*
7874754 GATTCAACTCCTAAAATAGGATAGAATTTTGCTAT
1 GATTCAACTCCTAAAATAGGATAGAATTCTGCTAT
* *
7874789 GTTTTAAACTCCTAAAGATAGGAT
1 G-ATTCAACTCCTAAA-ATAGGAT
7874813 CCACAAGCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
35 24 0.45
36 17 0.32
37 12 0.23
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (35 bp):
GATTCAACTCCTAAAATAGGATAGAATTCTGCTAT
Found at i:7875183 original size:17 final size:18
Alignment explanation
Indices: 7875157--7875196 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7875147 ATTATATGGA
7875157 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
7875173 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
7875191 TATTAT
1 TATTAT
7875197 ATGTGTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:7875697 original size:2 final size:2
Alignment explanation
Indices: 7875690--7875729 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
7875680 TAATACTTTG
*
7875690 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7875730 TTTTCTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:7877721 original size:15 final size:15
Alignment explanation
Indices: 7877704--7877759 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
7877694 TAACCGGTTT
*
7877704 CGGTTTTAAAAAAAT
1 CGGTTTTAAAAAAAC
*
7877719 CGGTTTTTTTAAAAAAC
1 CGG--TTTTAAAAAAAC
*
7877736 CGGTTATAAAAAAAC
1 CGGTTTTAAAAAAAC
*
7877751 CGATTTTAA
1 CGGTTTTAA
7877760 TATTCCAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.61
17 13 0.39
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (15 bp):
CGGTTTTAAAAAAAC
Found at i:7877732 original size:17 final size:17
Alignment explanation
Indices: 7877707--7877757 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
7877697 CCGGTTTCGG
*
7877707 TTTTAAAAAAATCGGTT
1 TTTTAAAAAAACCGGTT
*
7877724 TTTTTAAAAAACCGG--
1 TTTTAAAAAAACCGGTT
* *
7877739 TTATAAAAAAACCGATT
1 TTTTAAAAAAACCGGTT
7877756 TT
1 TT
7877758 AATATTCCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
15 12 0.44
17 15 0.56
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (17 bp):
TTTTAAAAAAACCGGTT
Found at i:7877951 original size:21 final size:21
Alignment explanation
Indices: 7877927--7877979 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7877917 ACACTTAGGG
*
7877927 AACCGATTCCCTATGAGAGGA
1 AACCGATTCCCTATAAGAGGA
7877948 AACCGATTCCCTATAAGAGGA
1 AACCGATTCCCTATAAGAGGA
*
7877969 TACCGATTCCC
1 AACCGATTCCC
7877980 CCATGCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (21 bp):
AACCGATTCCCTATAAGAGGA
Found at i:7878196 original size:13 final size:13
Alignment explanation
Indices: 7878175--7878229 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
7878165 AAGTTCGATA
*
7878175 AATTCAAATACTT
1 AATTGAAATACTT
7878188 AATTGAAATACTT
1 AATTGAAATACTT
* *
7878201 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
7878215 AATTGAAATACTT
1 AATTGAAATACTT
7878228 AA
1 AA
7878230 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:7878311 original size:32 final size:33
Alignment explanation
Indices: 7878215--7878313 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
7878205 AACTCAACAT
* * *
7878215 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7878248 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7878281 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
7878313 A
1 A
7878314 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:7878332 original size:21 final size:21
Alignment explanation
Indices: 7878308--7878347 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7878298 ACTTCAAGTT
7878308 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
7878329 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
7878348 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:7880712 original size:19 final size:19
Alignment explanation
Indices: 7880682--7880719 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7880672 GGTTAAAATA
7880682 ACCGGTTTAAAAAAATCCGG
1 ACCGGTTTAAAAAAA-CCGG
7880702 ACCGG-TTAAAAAAACCGG
1 ACCGGTTTAAAAAAACCGG
7880720 TTTTTCCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (19 bp):
ACCGGTTTAAAAAAACCGG
Found at i:7883619 original size:22 final size:22
Alignment explanation
Indices: 7883561--7883632 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
7883551 AATATTTATA
* *
7883561 ATATTATAATACTATTTTATTATA
1 ATATTA-AATA-TATTTTATAATT
7883585 AT-TTAAATGATATTTTATAATT
1 ATATTAAAT-ATATTTTATAATT
* * *
7883607 ATATTCAATATA-TATATATTT
1 ATATTAAATATATTTTATAATT
7883628 ATATT
1 ATATT
7883633 TATTCATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
21 12 0.29
22 18 0.44
23 9 0.22
24 2 0.05
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (22 bp):
ATATTAAATATATTTTATAATT
Found at i:7883647 original size:27 final size:26
Alignment explanation
Indices: 7883594--7883649 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 26
7883584 AATTTAAATG
7883594 ATATTTTATAATTATATTCAATATAT
1 ATATTTTATAATTATATTCAATATAT
7883620 ATATATTTAT-ATT-TATTCATATATTAT
1 ATAT-TTTATAATTATATTCA-ATA-TAT
7883647 ATA
1 ATA
7883650 AATATATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 6 0.22
26 10 0.37
27 11 0.41
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (26 bp):
ATATTTTATAATTATATTCAATATAT
Found at i:7883655 original size:25 final size:25
Alignment explanation
Indices: 7883608--7883656 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7883598 TTTATAATTA
**
7883608 TATTCAATATATATATATTTATATT
1 TATTCAATATATATATAAATATATT
7883633 TATTC-ATATATTATATAAATATAT
1 TATTCAATATA-TATATAAATATAT
7883657 CATACAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTCAATATATATATAAATATATT
Found at i:7887377 original size:21 final size:21
Alignment explanation
Indices: 7887351--7887397 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
7887341 CACCAGTCGT
7887351 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
7887372 TGCGATTTTGGACTATCGCAA
1 TGCGATTTTGGACTATCGCAA
7887393 TGCGA
1 TGCGA
7887398 ATATGTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (21 bp):
TGCGATTTTGGACTATCGCAA
Found at i:7887597 original size:62 final size:62
Alignment explanation
Indices: 7887427--7887602 Score: 255
Period size: 62 Copynumber: 2.8 Consensus size: 62
7887417 ATAGTCGAAG
* ** *
7887427 TTCGTATTGCGATAGTTGAAGTTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATATTCGACTATCGCATTGCGATTTACATA
*
7887489 TTCGCATTGCGATAGTCCAAGTTCACATTGCGA-ACTTCGACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATA-TTCGACTATCGCATTGCGATTTACATA
* * **
7887551 TTCGCATTGCGATAGTCCAAATTCGCATTGCGATATTCCAAAATCGCATTGC
1 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATATTCGACTATCGCATTGC
7887603 AATAGTCCAA
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (62 bp):
TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATATTCGACTATCGCATTGCGATTTACATA
Found at i:7887611 original size:21 final size:21
Alignment explanation
Indices: 7887404--7887625 Score: 135
Period size: 21 Copynumber: 10.7 Consensus size: 21
7887394 GCGAATATGT
* *
7887404 AAATCGCAATGCGATAGTCGA
1 AAATCGCATTGCGATAGTCCA
** * **
7887425 AGTTCGTATTGCGATAGTTGA
1 AAATCGCATTGCGATAGTCCA
** *
7887446 AGTTCGCATTGCGATAGTCGA
1 AAATCGCATTGCGATAGTCCA
** * *
7887467 CTATCGCATTGCGAT-TTACA
1 AAATCGCATTGCGATAGTCCA
* *
7887487 TATTCGCATTGCGATAGTCCA
1 AAATCGCATTGCGATAGTCCA
** * * *
7887508 AGTTCACATTGCGA-ACTTCGA
1 AAATCGCATTGCGATA-GTCCA
** * *
7887529 CTATCGCATTGCGAT-TTACA
1 AAATCGCATTGCGATAGTCCA
* *
7887549 TATTCGCATTGCGATAGTCCA
1 AAATCGCATTGCGATAGTCCA
* *
7887570 AATTCGCATTGCGATATTCCA
1 AAATCGCATTGCGATAGTCCA
*
7887591 AAATCGCATTGCAATAGTCCA
1 AAATCGCATTGCGATAGTCCA
*
7887612 AAATCGCTTTGCGA
1 AAATCGCATTGCGA
7887626 ATCTGGAAAC
Statistics
Matches: 156, Mismatches: 41, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
20 30 0.19
21 126 0.81
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (21 bp):
AAATCGCATTGCGATAGTCCA
Found at i:7888318 original size:31 final size:31
Alignment explanation
Indices: 7888272--7888358 Score: 106
Period size: 31 Copynumber: 2.8 Consensus size: 31
7888262 TTCGATAATA
* *
7888272 TAATAATTATTTTATAGTA-TTTAGATAAATT
1 TAATAATAATTTTATAATATTTTA-ATAAATT
*
7888303 TATTAATAATTTTATAATATTTTAATAAATT
1 TAATAATAATTTTATAATATTTTAATAAATT
*
7888334 TAATAA-ATATTTTATAATTTTTTAA
1 TAATAATA-ATTTTATAATATTTTAA
7888359 ACTTTATTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
30 1 0.02
31 44 0.90
32 4 0.08
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (31 bp):
TAATAATAATTTTATAATATTTTAATAAATT
Found at i:7888329 original size:19 final size:20
Alignment explanation
Indices: 7888296--7888359 Score: 71
Period size: 19 Copynumber: 3.2 Consensus size: 20
7888286 TAGTATTTAG
7888296 ATAAAT-TTATTAATAATTTT
1 ATAAATATT-TTAATAATTTT
*
7888316 AT-AATATTTTAATAAATTTA
1 ATAAATATTTTAAT-AATTTT
7888336 ATAAATATTTT-ATAATTTT
1 ATAAATATTTTAATAATTTT
*
7888355 TTAAA
1 ATAAA
7888360 CTTTATTGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 17 0.45
20 13 0.34
21 8 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATAAATATTTTAATAATTTT
Found at i:7889123 original size:22 final size:22
Alignment explanation
Indices: 7889076--7889123 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7889066 CAATAAAGTT
*
7889076 TAAAAAATTATAAAATACTTAT
1 TAAAAAATTATAAAATACTTAA
*
7889098 TAAAAGATTATAAAATTA-TTAA
1 TAAAAAATTATAAAA-TACTTAA
7889120 TAAA
1 TAAA
7889124 TTTATCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAAAATTATAAAATACTTAA
Found at i:7897901 original size:33 final size:33
Alignment explanation
Indices: 7897861--7897923 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
7897851 TGTTCAAAGT
7897861 TTGGCCACCAACCAAGATGAAATTTCCAACAAG
1 TTGGCCACCAACCAAGATGAAATTTCCAACAAG
7897894 TTGGCCACCAACCAAGATGAAATTTCCAAC
1 TTGGCCACCAACCAAGATGAAATTTCCAAC
7897924 TTGTCAACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.19
Consensus pattern (33 bp):
TTGGCCACCAACCAAGATGAAATTTCCAACAAG
Found at i:7902526 original size:36 final size:37
Alignment explanation
Indices: 7902486--7902591 Score: 98
Period size: 35 Copynumber: 2.9 Consensus size: 37
7902476 CAAGAACAAT
*
7902486 ATGTTCAAAGTTTGGCCACCTACCAA-A-GAATTTTCA-
1 ATGTTCAAAGTTTGGCCACC-ACCAATATGAA-ATTCAC
* *
7902522 ATGTTTACAAG-TTAGCCACCA--AATATGAAATTCAC
1 ATGTTCA-AAGTTTGGCCACCACCAATATGAAATTCAC
*
7902557 ATGTTCAAAGTTTGGCCACCAACCAAGATGAAATT
1 ATGTTCAAAGTTTGGCCACC-ACCAATATGAAATT
7902592 TCCAATAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
33 2 0.04
34 8 0.14
35 18 0.32
36 15 0.27
37 3 0.05
38 10 0.18
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (37 bp):
ATGTTCAAAGTTTGGCCACCACCAATATGAAATTCAC
Done.