Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 41
Found at i:7909512 original size:10 final size:10
Alignment explanation
Indices: 7909499--7909532 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7909489 TTTTTCTTAA
*
7909499 TAAATTAAAT
1 TAAATTAAAC
7909509 TAAATTAAAC
1 TAAATTAAAC
*
7909519 TAAACTAAAC
1 TAAATTAAAC
7909529 TAAA
1 TAAA
7909533 ATTTTAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAATTAAAC
Found at i:7909628 original size:20 final size:20
Alignment explanation
Indices: 7909603--7909659 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
7909593 TTTGGTTCAC
*
7909603 GAATGTAAGATTACCGGTGG
1 GAATGTAAGATTACCAGTGG
*
7909623 GAATGTAAGATTATCAGTGG
1 GAATGTAAGATTACCAGTGG
7909643 GAATGTAAGATTACCAG
1 GAATGTAAGATTACCAG
7909660 GGAATAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.30, T:0.26
Consensus pattern (20 bp):
GAATGTAAGATTACCAGTGG
Found at i:7909888 original size:40 final size:42
Alignment explanation
Indices: 7909810--7909889 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
7909800 AAGTTGGAAA
* *
7909810 ATATTTATATATTTTCTTTAAAAAAATTAAATTCATAAAATT
1 ATATATATATATTTTCTTTAAAAAAATTAAAATCATAAAATT
** *
7909852 ATATATATATATTTT-TTTTTACAAATTAAAAT-ATAAAA
1 ATATATATATATTTTCTTTAAAAAAATTAAAATCATAAAA
7909890 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 6 0.18
41 13 0.39
42 14 0.42
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (42 bp):
ATATATATATATTTTCTTTAAAAAAATTAAAATCATAAAATT
Found at i:7919599 original size:20 final size:20
Alignment explanation
Indices: 7919556--7919593 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7919546 TCATCAAATT
7919556 AGTATGAATACTATGTTTGA
1 AGTATGAATACTATGTTTGA
* *
7919576 AGTATTAATATTATGTTT
1 AGTATGAATACTATGTTT
7919594 ACAGTAACGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (20 bp):
AGTATGAATACTATGTTTGA
Found at i:7924450 original size:20 final size:21
Alignment explanation
Indices: 7924425--7924472 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
7924415 TTGTGGCATG
* *
7924425 CTTTTTCTA-CTGTTGTGATA
1 CTTTTTCTAGCTCTTGTGACA
7924445 CTTTTTCTATGCTCTTGTGACA
1 CTTTTTCTA-GCTCTTGTGACA
7924467 CTTTTT
1 CTTTTT
7924473 TTTTATGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
22 15 0.62
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.56
Consensus pattern (21 bp):
CTTTTTCTAGCTCTTGTGACA
Found at i:7943710 original size:2 final size:2
Alignment explanation
Indices: 7943703--7943733 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7943693 CTAAATAGCA
7943703 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7943734 CAGATCAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7951151 original size:15 final size:16
Alignment explanation
Indices: 7951125--7951154 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7951115 TATCCATTGG
7951125 TTTGATTCTGATTTGA
1 TTTGATTCTGATTTGA
7951141 TTTGA-TCTGATTTG
1 TTTGATTCTGATTTG
7951155 TAGGAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.17, C:0.07, G:0.20, T:0.57
Consensus pattern (16 bp):
TTTGATTCTGATTTGA
Found at i:7954047 original size:7 final size:7
Alignment explanation
Indices: 7954037--7954100 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
7954027 GGGATTAGGT
7954037 GTTTAAG
1 GTTTAAG
7954044 GTTTAAG
1 GTTTAAG
*
7954051 ATTTAAG
1 GTTTAAG
* *
7954058 GTCTAGG
1 GTTTAAG
7954065 GTTT-AG
1 GTTTAAG
7954071 AGTTTAAG
1 -GTTTAAG
7954079 GTTTATAG
1 GTTTA-AG
*
7954087 GATTTAGG
1 G-TTTAAG
7954095 GTTTAA
1 GTTTAA
7954101 ATTAAATAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
6 1 0.02
7 33 0.73
8 7 0.16
9 4 0.09
ACGTcount: A:0.28, C:0.02, G:0.28, T:0.42
Consensus pattern (7 bp):
GTTTAAG
Found at i:7957131 original size:23 final size:22
Alignment explanation
Indices: 7957105--7957164 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 22
7957095 ATATTTTAAA
7957105 TTATTATATATTTTAATTTTTTT
1 TTATTATATATTTT-ATTTTTTT
* *
7957128 TTATTA-ATAATCTATTTTTTT
1 TTATTATATATTTTATTTTTTT
*
7957149 TAAATTATATAATTTT
1 T-TATTATAT-ATTTT
7957165 TTCATTCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 9 0.31
22 9 0.31
23 8 0.28
24 3 0.10
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTATTATATATTTTATTTTTTT
Found at i:7958447 original size:20 final size:20
Alignment explanation
Indices: 7958422--7958462 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7958412 TTTAATTTAA
7958422 TAATTTT-ATTCTCTAATTTT
1 TAATTTTAATT-TCTAATTTT
*
7958442 TAATTTTAATTTTTAATTTT
1 TAATTTTAATTTCTAATTTT
7958462 T
1 T
7958463 CATTCGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TAATTTTAATTTCTAATTTT
Found at i:7958451 original size:13 final size:13
Alignment explanation
Indices: 7958435--7958461 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7958425 TTTTATTCTC
7958435 TAATTTTTAATTT
1 TAATTTTTAATTT
7958448 TAATTTTTAATTT
1 TAATTTTTAATTT
7958461 T
1 T
7958462 TCATTCGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TAATTTTTAATTT
Found at i:7965492 original size:20 final size:21
Alignment explanation
Indices: 7965467--7965509 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
7965457 AGATCATCCA
7965467 ATGTGC-TGGGCAGCTTTATT
1 ATGTGCTTGGGCAGCTTTATT
7965487 ATGTGCTTATGGGCAGCTTTATT
1 ATGTGC-T-TGGGCAGCTTTATT
7965510 CGTTGACGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
23 14 0.70
ACGTcount: A:0.16, C:0.14, G:0.28, T:0.42
Consensus pattern (21 bp):
ATGTGCTTGGGCAGCTTTATT
Found at i:7966331 original size:20 final size:20
Alignment explanation
Indices: 7966293--7966332 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7966283 AACTGGATGC
**
7966293 GGTTTCCAAGTGTTGGTCAA
1 GGTTTCCAAGTGTAAGTCAA
7966313 GGTTTCCAAGTGTAAGTCAA
1 GGTTTCCAAGTGTAAGTCAA
7966333 ACTTGTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (20 bp):
GGTTTCCAAGTGTAAGTCAA
Found at i:7966525 original size:112 final size:112
Alignment explanation
Indices: 7966327--7966553 Score: 337
Period size: 112 Copynumber: 2.0 Consensus size: 112
7966317 TCCAAGTGTA
* * * * *
7966327 AGTCAAACTTGTAGGTGCCATAAGTGACAATAGGAGAAATTGATTGTCAAACTAACAACCCAATT
1 AGTCAAACTTGAAGGTGCCATAAATGACAATAAGAGAAATTGATTGCCAAACCAACAACCCAATT
*
7966392 GACGGTGTATCTTTTGCTGAAAATAAGGAAAACCAATTAAATGAATT
66 GACGGTGCATCTTTTGCTGAAAATAAGGAAAACCAATTAAATGAATT
* * *
7966439 AGTCAAACTTGAAGGTGCCATAAATGGCAATAAGAGAAATTGGTTGCCAAGCCAACAACCCAATT
1 AGTCAAACTTGAAGGTGCCATAAATGACAATAAGAGAAATTGATTGCCAAACCAACAACCCAATT
* * * *
7966504 GGCGTTGCATCTTTTGTTGAAAATAAGGAAAACGAATTAAATGAATT
66 GACGGTGCATCTTTTGCTGAAAATAAGGAAAACCAATTAAATGAATT
7966551 AGT
1 AGT
7966554 TGATATAAAT
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 102 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.26
Consensus pattern (112 bp):
AGTCAAACTTGAAGGTGCCATAAATGACAATAAGAGAAATTGATTGCCAAACCAACAACCCAATT
GACGGTGCATCTTTTGCTGAAAATAAGGAAAACCAATTAAATGAATT
Found at i:7967175 original size:19 final size:19
Alignment explanation
Indices: 7967147--7967208 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
7967137 TGTATTTTAG
*
7967147 TTTAAATAGGTTTTAGTAT
1 TTTAATTAGGTTTTAGTAT
* *
7967166 TTTAATTAGGATTTAGAAT
1 TTTAATTAGGTTTTAGTAT
* *
7967185 ATTATATTA-TTTTTAGGTAT
1 TTTA-ATTAGGTTTTA-GTAT
7967205 TTTA
1 TTTA
7967209 GTTTAAATAG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
19 23 0.70
20 10 0.30
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (19 bp):
TTTAATTAGGTTTTAGTAT
Found at i:7967206 original size:75 final size:75
Alignment explanation
Indices: 7967008--7967189 Score: 314
Period size: 76 Copynumber: 2.4 Consensus size: 75
7966998 AAACATTATA
7967008 TTTTA-TATTTTAATTAAGTTTAGGATATTATTTTTATATTTTATATTTATCTTTGTATTTTAGT
1 TTTTAGTATTTTAATTAAGTTTAGGATATTATTTTTATATTTTATATTTATCTTTGTATTTTAGT
7967072 TTAAATAGGT
66 TTAAATAGGT
7967082 TTTTAGTATTTTAATTAAGTTTTAGGATATTATTTTTATATTTTATATTTATCTTTGTATTTTAG
1 TTTTAGTATTTTAATTAAG-TTTAGGATATTATTTTTATATTTTATATTTATCTTTGTATTTTAG
7967147 TTTAAATAGG-
65 TTTAAATAGGT
* *
7967157 TTTTAGTATTTTAATTAGGATTTAGAATATTAT
1 TTTTAGTATTTTAATTAAG-TTTAGGATATTAT
7967190 ATTATTTTTA
Statistics
Matches: 103, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
74 5 0.05
75 43 0.42
76 55 0.53
ACGTcount: A:0.29, C:0.01, G:0.10, T:0.59
Consensus pattern (75 bp):
TTTTAGTATTTTAATTAAGTTTAGGATATTATTTTTATATTTTATATTTATCTTTGTATTTTAGT
TTAAATAGGT
Found at i:7967949 original size:13 final size:13
Alignment explanation
Indices: 7967923--7967965 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
7967913 TATTTATTAC
7967923 TATTAATATT-TAT
1 TATT-ATATTATAT
7967936 TATTATATTATAT
1 TATTATATTATAT
*
7967949 TATTATATTATTT
1 TATTATATTATAT
7967962 TATT
1 TATT
7967966 TTTTTATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 5 0.18
13 23 0.82
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:7967960 original size:16 final size:16
Alignment explanation
Indices: 7967910--7967965 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
7967900 AATCCCCCTT
7967910 TTATATTTATTACTATTA
1 TTATA-TTATTA-TATTA
*
7967928 ATAT-TTATTAT-TATA
1 TTATATTATTATAT-TA
7967943 TTATATTATTATATTA
1 TTATATTATTATATTA
*
7967959 TTTTATT
1 TTATATT
7967966 TTTTTATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
14 1 0.03
15 6 0.19
16 21 0.66
17 1 0.03
18 3 0.09
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATATTATTATATTA
Found at i:7973512 original size:17 final size:17
Alignment explanation
Indices: 7973486--7973519 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7973476 AACCCATTTC
*
7973486 ATTATATTTTTGTTTTT
1 ATTATATTTTTATTTTT
*
7973503 ATTATTTTTTTATTTTT
1 ATTATATTTTTATTTTT
7973520 TTAGTGAACT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (17 bp):
ATTATATTTTTATTTTT
Found at i:7975397 original size:75 final size:75
Alignment explanation
Indices: 7975242--7975410 Score: 225
Period size: 75 Copynumber: 2.3 Consensus size: 75
7975232 TTAAACTCAA
*
7975242 ATTTAGGATAATATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTAT
1 ATTTAGGATATTATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTAT
7975307 TTTAATTAAG
66 TTTAATTAAG
* * * * *
7975317 TTTTAGGATATTATTTT-TATATTTTATCTTTATCTTTGTATTTTAGTTTAAATATG-TTTTAGT
1 ATTTAGGATATTATTTTAAACATTATAT-TTTATCTTTGTA-TTTAGTTTAAATAGGTTTTTAGT
*
7975380 ATTTTAATTAGG
64 ATTTTAATTAAG
* *
7975392 ATTTAGAATATTATATTAA
1 ATTTAGGATATTATTTTAA
7975411 TTTTTAGGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 5
0.83 0.11 0.05
Matches are distributed among these distances:
74 7 0.09
75 59 0.74
76 14 0.17
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.56
Consensus pattern (75 bp):
ATTTAGGATATTATTTTAAACATTATATTTTATCTTTGTATTTAGTTTAAATAGGTTTTTAGTAT
TTTAATTAAG
Found at i:7976091 original size:20 final size:21
Alignment explanation
Indices: 7976049--7976092 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7976039 CTCTTAATTG
7976049 TTATTTAATTATTTTTTTCTT
1 TTATTTAATTATTTTTTTCTT
*
7976070 TTATTT-ATTCTTATTTTT-TT
1 TTATTTAATTATT-TTTTTCTT
7976090 TTA
1 TTA
7976093 ACCACAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (21 bp):
TTATTTAATTATTTTTTTCTT
Found at i:7980116 original size:400 final size:385
Alignment explanation
Indices: 7979390--7980175 Score: 1403
Period size: 400 Copynumber: 2.0 Consensus size: 385
7979380 CATTGTTCGA
7979390 GTACTTCTGGAGTTTTGTTGTAAATTGCGATTGACAATTACACCAACTTTATGTAAAAAACATAT
1 GTACTTCTGGAGTTTTGTTGTAAATTGCGATTGACAATTACACCAACTTTATGTAAAAAACATAT
*
7979455 TTTTTATATCAATCTAGAGGAAGAAGTCTATATGAAATTCCACATGGCTTAAAGTCTGTTGAAGG
66 TTTTTATATCAAGCTAGAGGAAGAAGTCTATATGAAATTCCACATGGCTTAAAGTCTGTTGAAGG
7979520 TAGCACAAGGTTTGCAAGCTCATAAGTCTCTATACGGTTAAAACAATCACCTAGAGCTTGGTTCA
131 TAGCACAAGGTTTGCAAGCTCATAAGTCTCTATACGGTTAAAACAATCACCTAGAGCTTGGTTCA
7979585 GTAGGTTCACTAAGTCATTCTTAAAACGGCTACAAGTAGTCTCTTACCGATCACTTTTTCATGTA
196 GTAGGTTCACTAAGTCATTCTTAAAACGGCTACAAGTAGTCTCTTACCGATCACTTTTTCATGTA
*
7979650 ACTTATACAATAAGAAAGTTATCCTAATTGTGTATGTGGATGACCTAATTCTTACAAGAGATAAC
261 ACTTATACAATAAGAAAGTTATCCTAATTGTGTACGTGGATGACCTAATTCTTACAAGAGATAAC
7979715 GAGGAAGAGATTAACAATTTTGAAGAATTTGTTAAACATGAAATTTGAAACCAAGGACTTG
326 GAGGAAGAGATTAACAA-TTTGAAGAATTTGTTAAACATGAAATTTGAAACCAAGGACTTG
7979776 GTACTTCT-GAGTTTTGTTGTAAATTGCGATTGACAATTACACCAACTTTATGTAAAAAACATAT
1 GTACTTCTGGAGTTTTGTTGTAAATTGCGATTGACAATTACACCAACTTTATGTAAAAAACATAT
7979840 TTTTTAATATCAAGCTAGAGGAAGAAGTCTATATGAAATTACCACATGGCTTAAAGTCTGTTGAA
66 TTTTT-ATATCAAGCTAGAGGAAGAAGTCTATATGAAATT-CCACATGGCTTAAAGTCTGTTGAA
7979905 GGTAGCAACAAGGTTTGCAAGCTCGATAAGTCTCTATACGGGTTAAAACAATCACCTAGAGCTTG
129 GGTAGC-ACAAGGTTTGCAAGCTC-ATAAGTCTCTATAC-GGTTAAAACAATCACCTAGAGCTTG
7979970 GTTCAGTAGGTTCACTAAAGTCATTCTTAAAAACGGCTACAAGTAGTCTCTTACCGATCATACTT
191 GTTCAGTAGGTTCACT-AAGTCATTCTT-AAAACGGCTACAAGTAGTCTCTTACCGATC--AC--
7980035 TTTTTATCAATGTAACTTATACAAATAAGAAAGTTATCCTAATTGTGTACGTGGATGACCTAATT
250 -TTTT-TC-ATGTAACTTATAC-AATAAGAAAGTTATCCTAATTGTGTACGTGGATGACCTAATT
7980100 CTTACAAGAGATAACGAGGAAGAGATTAACAATTTGAAGAATTTGTTAAACATGAAATTTGAAAC
311 CTTACAAGAGATAACGAGGAAGAGATTAACAATTTGAAGAATTTGTTAAACATGAAATTTGAAAC
7980165 CAAGGACTTG
376 CAAGGACTTG
7980175 G
1 G
7980176 GAAAGCTAAG
Statistics
Matches: 383, Mismatches: 2, Indels: 17
0.95 0.00 0.04
Matches are distributed among these distances:
385 61 0.16
386 41 0.11
387 30 0.08
388 17 0.04
389 14 0.04
390 41 0.11
391 11 0.03
392 30 0.08
394 2 0.01
397 4 0.01
398 2 0.01
399 57 0.15
400 73 0.19
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (385 bp):
GTACTTCTGGAGTTTTGTTGTAAATTGCGATTGACAATTACACCAACTTTATGTAAAAAACATAT
TTTTTATATCAAGCTAGAGGAAGAAGTCTATATGAAATTCCACATGGCTTAAAGTCTGTTGAAGG
TAGCACAAGGTTTGCAAGCTCATAAGTCTCTATACGGTTAAAACAATCACCTAGAGCTTGGTTCA
GTAGGTTCACTAAGTCATTCTTAAAACGGCTACAAGTAGTCTCTTACCGATCACTTTTTCATGTA
ACTTATACAATAAGAAAGTTATCCTAATTGTGTACGTGGATGACCTAATTCTTACAAGAGATAAC
GAGGAAGAGATTAACAATTTGAAGAATTTGTTAAACATGAAATTTGAAACCAAGGACTTG
Found at i:7982769 original size:12 final size:12
Alignment explanation
Indices: 7982752--7982785 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7982742 TTATATTATG
7982752 ATTATTAATAAT
1 ATTATTAATAAT
* *
7982764 ATTATTAGTATT
1 ATTATTAATAAT
7982776 ATTATTAATA
1 ATTATTAATA
7982786 TCATTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (12 bp):
ATTATTAATAAT
Found at i:7989278 original size:36 final size:36
Alignment explanation
Indices: 7989225--7989355 Score: 102
Period size: 36 Copynumber: 3.5 Consensus size: 36
7989215 GGAGGATTTA
* * *
7989225 TCTCACTGGAGATTGTTTTTCTTAAAATAGACTTTG
1 TCTCACTTGAGACTGTTTTTCTTAAAAAAGACTTTG
* * *
7989261 TCTCACTTGAGACTGTTTTACTCGAAAAAAGACATTTCA
1 TCTCACTTGAGACTGTTTTTCT-TAAAAAAGAC-TTT-G
* * ** * *
7989300 TTTGACTCAAGATTGTTTTTCTTAAAACAA-TCTTTG
1 TCTCACTTGAGACTGTTTTTCTTAAAA-AAGACTTTG
7989336 TCTCACTTGAGACATGTTTT
1 TCTCACTTGAGAC-TGTTTT
7989356 ATTCAAAACA
Statistics
Matches: 70, Mismatches: 20, Indels: 9
0.71 0.20 0.09
Matches are distributed among these distances:
36 27 0.39
37 17 0.24
38 8 0.11
39 18 0.26
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (36 bp):
TCTCACTTGAGACTGTTTTTCTTAAAAAAGACTTTG
Found at i:7989324 original size:75 final size:75
Alignment explanation
Indices: 7989234--7989471 Score: 288
Period size: 76 Copynumber: 3.1 Consensus size: 75
7989224 ATCTCACTGG
7989234 AGATTGTTTTTCTTAAAATAGACTTTGTCTCACTTGAGACTGTTTTACTCGAAAAAAGACATTTC
1 AGATTGTTTTTCTTAAAATAGACTTTGTCTCACTTGAGACTGTTTTACTCGAAAAAAGACATTTC
*
7989299 ATTTGACTCA
66 ATTTCACTCA
* *
7989309 AGATTGTTTTTCTTAAAACA-ATCTTTGTCTCACTTGAGACATGTTTTATTC-AAAACAAGACAT
1 AGATTGTTTTTCTTAAAATAGA-CTTTGTCTCACTTGAGAC-TGTTTTACTCGAAAA-AAGACAT
7989372 TTCATTTCACTACA
63 TTCATTTCACT-CA
* * * * *
7989386 TG-TTGTTTTTCTTAAAGTAAGA-TTTATCTCACATGAGAC-GATTTTTACTCGAAAGAAGACAT
1 AGATTGTTTTTCTTAAAAT-AGACTTTGTCTCACTTGAGACTG--TTTTACTCGAAAAAAGACAT
**
7989448 TTCATTTTTCTCA
63 TTCATTTCACTCA
7989461 AGATTGTTTTT
1 AGATTGTTTTT
7989472 AAAGAAGATT
Statistics
Matches: 140, Mismatches: 13, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
74 2 0.01
75 44 0.31
76 86 0.61
77 7 0.05
78 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (75 bp):
AGATTGTTTTTCTTAAAATAGACTTTGTCTCACTTGAGACTGTTTTACTCGAAAAAAGACATTTC
ATTTCACTCA
Found at i:7989533 original size:39 final size:37
Alignment explanation
Indices: 7989476--7989690 Score: 204
Period size: 36 Copynumber: 5.7 Consensus size: 37
7989466 GTTTTTAAAG
*
7989476 AAGATTTTATCTCCCTTGAGATAGTTTCCCTCGAAACAA
1 AAGATTTTATCT-CCTTGAGATAGTTTCCCTTGAAAC-A
* * *
7989515 AAGATTTTATCTTACTTGAGATAGTTTCTCTCGAAACA
1 AAGATTTTATC-TCCTTGAGATAGTTTCCCTTGAAACA
*
7989553 GAAGATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAAC-
1 -AAGATTTTATCTC-CTTGAGATAGTTTCCCTTGAAACA
** *
7989591 AAG-TTTGGTCTCTCTTGAGACAGTTTCCCTTGAAAC-
1 AAGATTTTATCTC-CTTGAGATAGTTTCCCTTGAAACA
* *
7989627 AA-ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
1 AAGATTTTATCTC-CTTGAGATAGTTTCCCTTGAAACA
* * * *
7989664 AAAAATGTATCTCACTTGAGATGGTTT
1 AAGATTTTATCTC-CTTGAGATAGTTT
7989691 TTCTTAAAAC
Statistics
Matches: 154, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
36 64 0.42
37 5 0.03
38 20 0.13
39 64 0.42
40 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (37 bp):
AAGATTTTATCTCCTTGAGATAGTTTCCCTTGAAACA
Found at i:7989573 original size:78 final size:78
Alignment explanation
Indices: 7989474--7989690 Score: 243
Period size: 78 Copynumber: 2.9 Consensus size: 78
7989464 TTGTTTTTAA
* *
7989474 AGAAGATTTTATCTCCCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTTACTTGAGATAG
1 AGAAGATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTTACTTGAGATAG
*
7989539 TTTCTCTCGAAAC
66 TTTCCCTCGAAAC
* ** *
7989552 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAAC--AAG-TTTGGTCTCT-CTTGAGACA
1 AGAAGATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAAGATTTTATCT-TACTTGAGATA
*
7989613 GTTTCCCTTGAAAC
65 GTTTCCCTCGAAAC
* * * * * *
7989627 --AA-ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA-AATGTATCTCACTTGAGATGG
1 AGAAGATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTTACTTGAGATAG
7989688 TTT
66 TTT
7989691 TTCTTAAAAC
Statistics
Matches: 117, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
72 32 0.27
73 2 0.02
74 17 0.15
75 26 0.22
76 4 0.03
78 36 0.31
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (78 bp):
AGAAGATTTTGTCTCCCTTGAGATAGTTTCCCTTGAAACAAAAGATTTTATCTTACTTGAGATAG
TTTCCCTCGAAAC
Found at i:7989609 original size:36 final size:37
Alignment explanation
Indices: 7989476--7989664 Score: 222
Period size: 39 Copynumber: 5.1 Consensus size: 37
7989466 GTTTTTAAAG
* * *
7989476 AAGATTTTATCTCCCTTGAGATAGTTTCCCTCGAAAC
1 AAGATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
* * *
7989513 AAAAGATTTTATCT-TACTTGAGATAGTTTCTCTCGAAAC
1 --AAGATTTTGTCTCT-CTTGAGATAGTTTCCCTTGAAAC
*
7989552 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAAC
1 --AAGATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
* *
7989591 AAG-TTTGGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAGATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
*
7989627 AA-ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AAGATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
7989663 AA
1 AA
7989665 AAAATGTATC
Statistics
Matches: 136, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
36 66 0.49
37 3 0.02
39 67 0.49
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (37 bp):
AAGATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
Found at i:7989665 original size:36 final size:36
Alignment explanation
Indices: 7989479--7989665 Score: 205
Period size: 36 Copynumber: 5.0 Consensus size: 36
7989469 TTTAAAGAAG
* * *
7989479 ATTTTATCTCCCTTGAGATAGTTTCCCTCGAAACAAAA
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC--AA
* * *
7989517 GATTTTATCT-TACTTGAGATAGTTTCTCTCGAAACAGAA
1 -ATTTTGTCTCT-CTTGAGATAGTTTCCCTTGAAAC--AA
*
7989556 GATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAACAA
1 -ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
* * *
7989593 GTTTGGTCTCTCTTGAGACAGTTTCCCTTGAAACAA
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
*
7989629 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAA
1 ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
7989665 A
1 A
7989666 AAATGTATCT
Statistics
Matches: 133, Mismatches: 13, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
36 67 0.50
37 2 0.02
39 64 0.48
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (36 bp):
ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
Found at i:7989718 original size:74 final size:74
Alignment explanation
Indices: 7989479--7989774 Score: 254
Period size: 74 Copynumber: 3.9 Consensus size: 74
7989469 TTTAAAGAAG
* * * * * * *
7989479 ATTTTATCTCCCTTGAGATAGTTTCCCTCGAAACAAAAGATTTTATCTTACTTGAGATAGTTTCT
1 ATTTTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAA-AATGTATCTCACTTGAGATAGTTTCT
* *
7989544 CTCGAAACAGAA
65 CT-TAAA-ACAA
* *** * * * *
7989556 GATTTTGTCTCGCTTGAGATAGTTTCCCTTGAAAC-AAGTTTG-GTCTCTCTTGAGACAGTTTCC
1 -ATTTTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAAAATGTATCTCACTTGAGATAGTTTCT
*
7989619 CTTGAAACAA
65 CTTAAAACAA
* * *
7989629 ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAAAATGTATCTCACTTGAGATGGTTTTTC
1 ATTTTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAAAATGTATCTCACTTGAGATAGTTTCTC
*
7989694 TTAAAACCA
66 TTAAAACAA
* * * * * * * *
7989703 ATTTCGTCTCGCTTGAGACAATTTTCCCTTAAAACAAGAAATTTTATTTCACTAGAGAGAGTTTC
1 ATTTTGTCTCGCTTGAGAC-AGTTTCCCTTGAAACAA-AAAATGTATCTCACTTGAGATAGTTTC
7989768 TCTTAAA
64 TCTTAAA
7989775 CAGATTTCTT
Statistics
Matches: 176, Mismatches: 38, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
72 32 0.18
73 7 0.04
74 42 0.24
75 33 0.19
76 29 0.16
77 2 0.01
78 31 0.18
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (74 bp):
ATTTTGTCTCGCTTGAGACAGTTTCCCTTGAAACAAAAAATGTATCTCACTTGAGATAGTTTCTC
TTAAAACAA
Found at i:7990205 original size:136 final size:134
Alignment explanation
Indices: 7989961--7990306 Score: 456
Period size: 136 Copynumber: 2.6 Consensus size: 134
7989951 ACTGATCAAT
* * * *
7989961 ATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCTGATAGAGGGAGAATAAGTTAATAATGA
1 ATTTCCAAT-TAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAATGA
** * *
7990026 GAAGAGCTTGTTCGGCCTATCACTCGATTCATGACATTTTGAATCAGTGACGCCTCGCTTGAGGG
65 GAAGAGCTTGTTCAACCTATCACTCGATTCACGACATTTTGAATCAATGACGCCTCGCTTGAGGG
7990091 ATTGAC
130 A-TGAC
7990097 ATTTCCAATTAAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAATT-AGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAATGA
* * *
7990162 TAAGAGCTTGTTCAACCTATCACTCGATTCACGACATTTTGAATCAATGATGTCTCGCTTGAGGG
65 GAAGAGCTTGTTCAACCTATCACTCGATTCACGACATTTTGAATCAATGACGCCTCGCTTGAGGG
7990227 ATGAC
130 ATGAC
* * * * *
7990232 ATCTCTAA-TGGAGTTCATAATGAGAAAAACTCGT-T--CTAGA--G-GAAGAAGTTCATAATGA
1 ATTTCCAATTAGAGTTCATAATGAGAAGAACTCATCTGAC-AGAGGGAGAAGAAGTTCATAATGA
7990290 GAAGA-CTTGTTCAACCT
65 GAAGAGCTTGTTCAACCT
7990307 TAGCTCAACA
Statistics
Matches: 191, Mismatches: 17, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
127 12 0.06
128 21 0.11
129 1 0.01
130 1 0.01
131 3 0.02
132 1 0.01
133 22 0.12
134 1 0.01
135 10 0.05
136 119 0.62
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (134 bp):
ATTTCCAATTAGAGTTCATAATGAGAAGAACTCATCTGACAGAGGGAGAAGAAGTTCATAATGAG
AAGAGCTTGTTCAACCTATCACTCGATTCACGACATTTTGAATCAATGACGCCTCGCTTGAGGGA
TGAC
Found at i:7990557 original size:12 final size:13
Alignment explanation
Indices: 7990538--7990590 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 13
7990528 TAAAAAAATA
7990538 TATATATATTATAT
1 TATAT-TATTATAT
7990552 TATA-TATTATAT
1 TATATTATTATAT
7990564 TATGATTATTATTAT
1 TAT-ATTATTA-TAT
7990579 TAGTATTATTAT
1 TA-TATTATTAT
7990591 TAATATCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.31
13 1 0.03
14 10 0.29
15 12 0.34
16 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (13 bp):
TATATTATTATAT
Found at i:7990576 original size:3 final size:3
Alignment explanation
Indices: 7990544--7990592 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
7990534 AATATATATA
* *
7990544 TAT TA- TAT TAT ATAT TA- TAT TAT GAT TAT TAT TAT TAG TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7990588 TAT TA
1 TAT TA
7990593 ATATCATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:7991839 original size:2 final size:2
Alignment explanation
Indices: 7991832--7991863 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7991822 GAGATTTTAT
7991832 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7991864 ATGCTTGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7994146 original size:31 final size:32
Alignment explanation
Indices: 7994092--7994176 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
7994082 GTGACAACTT
* * * *
7994092 GGGTAGGCTATGAGGCCCCAAGGTATTTCCTTC
1 GGGTAGGCTTTAAGGCCCCAAGGTA-CTCCATC
7994125 -GGTAGGCTTTAAGG-CCCAAGGTACTCCATC
1 GGGTAGGCTTTAAGGCCCCAAGGTACTCCATC
* *
7994155 GGGTAGGCTTTCAGTCCCCAAG
1 GGGTAGGCTTTAAGGCCCCAAG
7994177 ATATTCCCTT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
30 5 0.11
31 21 0.48
32 18 0.41
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (32 bp):
GGGTAGGCTTTAAGGCCCCAAGGTACTCCATC
Found at i:7994407 original size:15 final size:17
Alignment explanation
Indices: 7994372--7994408 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
7994362 CTCCTCTCAG
7994372 TCTCCTGAATCTGTTTC
1 TCTCCTGAATCTGTTTC
7994389 TCTCCTGAATCTGTTTC
1 TCTCCTGAATCTGTTTC
7994406 TCT
1 TCT
7994409 AAACGTTCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.30, G:0.11, T:0.49
Consensus pattern (17 bp):
TCTCCTGAATCTGTTTC
Found at i:7995655 original size:23 final size:22
Alignment explanation
Indices: 7995629--7995673 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
7995619 TGCTACAATT
7995629 AAACAA-AACACCAAGAACAACCG
1 AAACAACAAC-CCAAGAA-AACCG
7995652 AAACAATCAACCCAAGAAAACC
1 AAACAA-CAACCCAAGAAAACC
7995674 CACCCAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 10 0.50
24 7 0.35
25 3 0.15
ACGTcount: A:0.60, C:0.31, G:0.07, T:0.02
Consensus pattern (22 bp):
AAACAACAACCCAAGAAAACCG
Found at i:8005636 original size:21 final size:21
Alignment explanation
Indices: 8005610--8005649 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8005600 AAGACTTTAT
8005610 TTTCAAAATAAAAAAATGATA
1 TTTCAAAATAAAAAAATGATA
*
8005631 TTTCAAAATTAAAAAATGA
1 TTTCAAAATAAAAAAATGA
8005650 AAAATAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (21 bp):
TTTCAAAATAAAAAAATGATA
Found at i:8018858 original size:23 final size:23
Alignment explanation
Indices: 8018825--8018913 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 23
8018815 AGTATTTTGG
8018825 TGCAGAGGGAATCGATACCCCCCT
1 TGCAG-GGGAATCGATACCCCCCT
* * *
8018849 TGCAGGGGAACCGATTCCCCCTT
1 TGCAGGGGAATCGATACCCCCCT
* * *
8018872 TGAAGGGGAATTGAT-TCCCCC-
1 TGCAGGGGAATCGATACCCCCCT
* *
8018893 -ACAGGGGAATCAATACCCCCC
1 TGCAGGGGAATCGATACCCCCC
8018914 ATGGGGTCTG
Statistics
Matches: 51, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
20 10 0.20
21 5 0.10
22 4 0.08
23 27 0.53
24 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.18
Consensus pattern (23 bp):
TGCAGGGGAATCGATACCCCCCT
Found at i:8018868 original size:22 final size:23
Alignment explanation
Indices: 8018825--8018892 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
8018815 AGTATTTTGG
* *
8018825 TGCAGAGGGAATCGATACCCCCCT
1 TGCAG-GGGAATCGATTCCCCCTT
*
8018849 TGCAGGGGAACCGATTCCCCCTT
1 TGCAGGGGAATCGATTCCCCCTT
* *
8018872 TGAAGGGGAATTGATTCCCCC
1 TGCAGGGGAATCGATTCCCCC
8018893 ACAGGGGAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
23 33 0.87
24 5 0.13
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (23 bp):
TGCAGGGGAATCGATTCCCCCTT
Found at i:8020820 original size:15 final size:15
Alignment explanation
Indices: 8020785--8020821 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
8020775 TTTTTAACAT
8020785 TTTGGA-TGTTTGAA
1 TTTGGATTGTTTGAA
8020799 TTGTGGATTGTTTGAA
1 TT-TGGATTGTTTGAA
8020815 TTTGGAT
1 TTTGGAT
8020822 GCTTATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 9 0.43
16 10 0.48
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.51
Consensus pattern (15 bp):
TTTGGATTGTTTGAA
Found at i:8023471 original size:21 final size:21
Alignment explanation
Indices: 8023445--8023484 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8023435 AAGACTTTAT
8023445 TTTCAAAA-TACAAAAATGATA
1 TTTCAAAATTA-AAAAATGATA
8023466 TTTCAAAATTAAAAAATGA
1 TTTCAAAATTAAAAAATGA
8023485 AAATAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30
Consensus pattern (21 bp):
TTTCAAAATTAAAAAATGATA
Found at i:8026451 original size:12 final size:12
Alignment explanation
Indices: 8026436--8026501 Score: 71
Period size: 12 Copynumber: 5.6 Consensus size: 12
8026426 GTTATTTAAA
8026436 CGGGTATTGGGC
1 CGGGTATTGGGC
*
8026448 CGGGTATTGGGT
1 CGGGTATTGGGC
* *
8026460 TGGGTATTGGGT
1 CGGGTATTGGGC
8026472 C-GGTATTGGGC
1 CGGGTATTGGGC
* * *
8026483 CGAGAATCGGGC
1 CGGGTATTGGGC
8026495 CGGGTAT
1 CGGGTAT
8026502 ATATATATTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
11 10 0.23
12 34 0.77
ACGTcount: A:0.12, C:0.14, G:0.47, T:0.27
Consensus pattern (12 bp):
CGGGTATTGGGC
Found at i:8026531 original size:21 final size:21
Alignment explanation
Indices: 8026507--8026546 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8026497 GGTATATATA
8026507 TATTTAAATTAAATATATTTT
1 TATTTAAATTAAATATATTTT
*
8026528 TATTTAAATTAAATTTATT
1 TATTTAAATTAAATATATT
8026547 AATATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTTAAATTAAATATATTTT
Found at i:8026552 original size:21 final size:21
Alignment explanation
Indices: 8026506--8026552 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8026496 GGGTATATAT
*
8026506 ATATTTAAATTAAATATATTT
1 ATATTTAAATTAAATATATTA
* *
8026527 TTATTTAAATTAAATTTATTA
1 ATATTTAAATTAAATATATTA
8026548 ATATT
1 ATATT
8026553 ATATATATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATTTAAATTAAATATATTA
Found at i:8027247 original size:12 final size:12
Alignment explanation
Indices: 8027230--8027263 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
8027220 ATGTACATAA
*
8027230 CTCAAACTTATT
1 CTCAAACCTATT
8027242 CTCAAACCTATT
1 CTCAAACCTATT
8027254 CTCAAACCTA
1 CTCAAACCTA
8027264 ATTAAGACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (12 bp):
CTCAAACCTATT
Found at i:8038369 original size:19 final size:20
Alignment explanation
Indices: 8038345--8038391 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
8038335 GAGTATATTC
8038345 AATATTTTTCT-AATATTAT
1 AATATTTTTCTAAATATTAT
8038364 AATATTTTTCTAAATATTAT
1 AATATTTTTCTAAATATTAT
8038384 AATATTTT
1 AATATTTT
8038392 ATTATTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (20 bp):
AATATTTTTCTAAATATTAT
Found at i:8040670 original size:41 final size:41
Alignment explanation
Indices: 8040592--8040689 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
8040582 ATTCGCGTTG
* * ***
8040592 CATTTCGCATTGTGATAGTTGAAAATCGCGTTACGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCAACACGATTTTC
*
8040633 CATTTCGCGTTGCGATAGTTGAAAATCGCAACGCGATTTTC
1 CATTTCGCGTTGCGATAGTTGAAAATCGCAACACGATTTTC
*
8040674 TATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
8040690 TTTTCATTGC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (41 bp):
CATTTCGCGTTGCGATAGTTGAAAATCGCAACACGATTTTC
Found at i:8040688 original size:20 final size:20
Alignment explanation
Indices: 8040665--8040709 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
8040655 AAATCGCAAC
*
8040665 GCGA-TTTTCTATTTCGCGTT
1 GCGATTTTTC-ATTGCGCGTT
8040685 GCGATTTTTCATTGCGCGTT
1 GCGATTTTTCATTGCGCGTT
8040705 GCGAT
1 GCGAT
8040710 AGTTGAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.44
Consensus pattern (20 bp):
GCGATTTTTCATTGCGCGTT
Found at i:8040703 original size:61 final size:61
Alignment explanation
Indices: 8040617--8040750 Score: 207
Period size: 61 Copynumber: 2.2 Consensus size: 61
8040607 TAGTTGAAAA
* * *
8040617 TCGCGTTACGATTTTCCATTTCGCGTTGCGATAGTTGAAAATCGCAACGCGA-TTTTCTATT
1 TCGCGTTGCGATTTTCCATTGCGCGTTGCGATAGTTGAAAATCGCAAAGCGATTTTTC-ATT
* *
8040678 TCGCGTTGCGATTTTTCATTGCGCGTTGCGATAGTTGAAAATCGTAAAGCGATTTTTCATT
1 TCGCGTTGCGATTTTCCATTGCGCGTTGCGATAGTTGAAAATCGCAAAGCGATTTTTCATT
8040739 TCGCGTTGCGAT
1 TCGCGTTGCGAT
8040751 AGTTGAAATC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
61 62 0.93
62 5 0.07
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (61 bp):
TCGCGTTGCGATTTTCCATTGCGCGTTGCGATAGTTGAAAATCGCAAAGCGATTTTTCATT
Found at i:8040770 original size:61 final size:61
Alignment explanation
Indices: 8040644--8040770 Score: 141
Period size: 61 Copynumber: 2.1 Consensus size: 61
8040634 ATTTCGCGTT
* * ** * ***
8040644 GCGATAGTTGAAAATCGCAACGCGATTTTCTATTTCGCGTTGCGATTTTTCATTGCGCGTT
1 GCGATAGTTGAAAATCGCAAAGCGATTTTCTATTTCGCGTTGCGATGTTGAAATGCGCAAC
*
8040705 GCGATAGTTGAAAATCGTAAAGCGATTTT-TCATTTCGCGTTGCGATAGTTGAAAT-CGCAAC
1 GCGATAGTTGAAAATCGCAAAGCGATTTTCT-ATTTCGCGTTGCGAT-GTTGAAATGCGCAAC
8040766 GCGAT
1 GCGAT
8040771 TTTTCATTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
60 1 0.02
61 50 0.91
62 4 0.07
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (61 bp):
GCGATAGTTGAAAATCGCAAAGCGATTTTCTATTTCGCGTTGCGATGTTGAAATGCGCAAC
Found at i:8040771 original size:40 final size:41
Alignment explanation
Indices: 8040685--8040793 Score: 184
Period size: 40 Copynumber: 2.7 Consensus size: 41
8040675 ATTTCGCGTT
* *
8040685 GCGATTTTTCATTGCGCGTTGCGATAGTTGAAAATCGTAAA
1 GCGATTTTTCATTTCGCGTTGCGATAGTTGAAAATCGCAAA
*
8040726 GCGATTTTTCATTTCGCGTTGCGATAGTTG-AAATCGCAAC
1 GCGATTTTTCATTTCGCGTTGCGATAGTTGAAAATCGCAAA
8040766 GCGATTTTTCATTTCGCGTTGCGATAGT
1 GCGATTTTTCATTTCGCGTTGCGATAGT
8040794 CTACAGTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
40 36 0.55
41 29 0.45
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (41 bp):
GCGATTTTTCATTTCGCGTTGCGATAGTTGAAAATCGCAAA
Found at i:8040789 original size:20 final size:20
Alignment explanation
Indices: 8040726--8040790 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
8040716 AAATCGTAAA
8040726 GCGATTTTTCATTTCGCGTT
1 GCGATTTTTCATTTCGCGTT
** * ** ***
8040746 GCGATAGTTGAAATCGCAAC
1 GCGATTTTTCATTTCGCGTT
8040766 GCGATTTTTCATTTCGCGTT
1 GCGATTTTTCATTTCGCGTT
8040786 GCGAT
1 GCGAT
8040791 AGTCTACAGT
Statistics
Matches: 29, Mismatches: 16, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.38
Consensus pattern (20 bp):
GCGATTTTTCATTTCGCGTT
Found at i:8040808 original size:22 final size:22
Alignment explanation
Indices: 8040782--8040856 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
8040772 TTTCATTTCG
8040782 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
8040804 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
8040823 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* *
8040845 TGTTGTGATAGT
1 CGTTGCGATAGT
8040857 TAAAAAAATA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
19 10 0.25
20 5 0.12
21 5 0.12
22 20 0.50
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:8040846 original size:19 final size:20
Alignment explanation
Indices: 8040782--8040846 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 20
8040772 TTTCATTTCG
8040782 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAG-T-T
** * *
8040804 CGTTGCGATTTTCCA-AATT
1 CGTTGCGATAGTCTACAGTT
8040823 CGTTGCGATAGTCTACAGTT
1 CGTTGCGATAGTCTACAGTT
8040843 -GTTG
1 CGTTG
8040847 TTGTGATAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
19 17 0.50
20 4 0.12
21 1 0.03
22 12 0.35
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
CGTTGCGATAGTCTACAGTT
Found at i:8040959 original size:5 final size:6
Alignment explanation
Indices: 8040923--8040956 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
8040913 ACGTATTACT
8040923 ACGACC ACGACC ACGACC ACGACC -CGACC -CGACC
1 ACGACC ACGACC ACGACC ACGACC ACGACC ACGACC
8040957 CGAGACGACG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.29, C:0.53, G:0.18, T:0.00
Consensus pattern (6 bp):
ACGACC
Found at i:8041217 original size:22 final size:22
Alignment explanation
Indices: 8041189--8041241 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
8041179 AATTTGGAAA
8041189 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
8041211 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
8041233 ATCGCAACG
1 ATCGCAACG
8041242 CGAAATGGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:8041293 original size:21 final size:21
Alignment explanation
Indices: 8041208--8041293 Score: 68
Period size: 21 Copynumber: 4.1 Consensus size: 21
8041198 ACAACTGTAG
* *
8041208 ACTATCGCAACGAC-AACTGTA
1 ACTATCGCAACG-CGAAATGCA
*
8041229 GACTATCGCAACGCGAAATGGA
1 -ACTATCGCAACGCGAAATGCA
* ** *
8041251 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
8041271 ACTATCGCAATGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
8041292 AC
1 AC
8041294 GCGAATTTGC
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
20 15 0.30
21 18 0.36
22 17 0.34
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:8049891 original size:22 final size:21
Alignment explanation
Indices: 8049860--8049900 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8049850 CGTAAATAGT
**
8049860 TAAAATATAACTTATAAAAAG
1 TAAAATATAAAATATAAAAAG
8049881 TAAAATAATAAAATATAAAA
1 TAAAAT-ATAAAATATAAAA
8049901 TGACTACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAAATATAAAATATAAAAAG
Found at i:8050889 original size:22 final size:21
Alignment explanation
Indices: 8050845--8050889 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8050835 TATCGATCTA
* *
8050845 TTAATTTTATCAATTAATTAT
1 TTAAATTTATCAATTAATCAT
*
8050866 TTAAATTTATCAATCTAGTCAT
1 TTAAATTTATCAAT-TAATCAT
8050888 TT
1 TT
8050890 GTTATCAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (21 bp):
TTAAATTTATCAATTAATCAT
Found at i:8055256 original size:15 final size:15
Alignment explanation
Indices: 8055236--8055265 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8055226 CTTGCATTAT
8055236 GCATGTGATAATTGA
1 GCATGTGATAATTGA
8055251 GCATGTGATAATTGA
1 GCATGTGATAATTGA
8055266 AAAGCGGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (15 bp):
GCATGTGATAATTGA
Found at i:8056284 original size:2 final size:2
Alignment explanation
Indices: 8056277--8056302 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8056267 GTTAAAAGAT
8056277 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8056303 AAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8058513 original size:21 final size:21
Alignment explanation
Indices: 8058483--8058523 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8058473 TAATATTTAA
*
8058483 ATAATTAATTAATAA-TATATT
1 ATAATCAATTAA-AATTATATT
8058504 ATAATCAATTAAAATTATAT
1 ATAATCAATTAAAATTATAT
8058524 GTAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAATCAATTAAAATTATATT
Found at i:8058688 original size:14 final size:14
Alignment explanation
Indices: 8058669--8058699 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8058659 GACCCTAAAT
8058669 TTTAAATTTTTATA
1 TTTAAATTTTTATA
8058683 TTTAAATTTTTATA
1 TTTAAATTTTTATA
8058697 TTT
1 TTT
8058700 TTTTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTAAATTTTTATA
Found at i:8059703 original size:23 final size:23
Alignment explanation
Indices: 8059677--8059721 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8059667 CACCACAGCT
*
8059677 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
8059700 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
8059722 ATATAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:8059861 original size:24 final size:25
Alignment explanation
Indices: 8059826--8059874 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
8059816 TTTCAAAAAT
8059826 ATATATATCCGAAGGA-CGCGTAGA
1 ATATATATCCGAAGGACCGCGTAGA
8059850 ATAT-TATCCCGAAGGACCGCGTAGA
1 ATATATAT-CCGAAGGACCGCGTAGA
8059875 CCCTCTACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.13
24 12 0.52
25 8 0.35
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (25 bp):
ATATATATCCGAAGGACCGCGTAGA
Found at i:8066604 original size:23 final size:24
Alignment explanation
Indices: 8066578--8066623 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
8066568 CACCACAGCT
*
8066578 CGTATAAATGCA-CCGAAGTGCCG
1 CGTAGAAATGCACCCGAAGTGCCG
* *
8066601 CGTAGAATTGCACCCGTAGTGCC
1 CGTAGAAATGCACCCGAAGTGCC
8066624 ATATAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (24 bp):
CGTAGAAATGCACCCGAAGTGCCG
Found at i:8068310 original size:26 final size:25
Alignment explanation
Indices: 8068253--8068314 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
8068243 TTTAAATTTG
* * *
8068253 TATAATTATAAAATATAATTTATAT
1 TATAATTATAAAATAAAAGTTATAA
*
8068278 TACTAATTATAACATAAAAAGTTATAA
1 TA-TAATTATAAAAT-AAAAGTTATAA
8068305 TATAATTATA
1 TATAATTATA
8068315 TTTTATCTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 2 0.06
26 19 0.61
27 10 0.32
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (25 bp):
TATAATTATAAAATAAAAGTTATAA
Found at i:8069352 original size:17 final size:18
Alignment explanation
Indices: 8069327--8069369 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
8069317 CAAGACTAAT
*
8069327 TTATTTAATT-TTTAAAA
1 TTATATAATTATTTAAAA
*
8069344 TTATATAATTATTTGAAA
1 TTATATAATTATTTAAAA
8069362 TT-TATAAT
1 TTATATAAT
8069370 ATTATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TTATATAATTATTTAAAA
Found at i:8070142 original size:17 final size:17
Alignment explanation
Indices: 8070116--8070151 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8070106 AAGTCTTTGT
*
8070116 ATTAAGAAATTAAATCA
1 ATTAAAAAATTAAATCA
*
8070133 ATTAAAAAATTACATCA
1 ATTAAAAAATTAAATCA
8070150 AT
1 AT
8070152 CAAGCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.31
Consensus pattern (17 bp):
ATTAAAAAATTAAATCA
Found at i:8082393 original size:14 final size:14
Alignment explanation
Indices: 8082376--8082411 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8082366 ATGTCTGTTT
8082376 ATTTATGTTCGTTC
1 ATTTATGTTCGTTC
*
8082390 ATTTATGTTTGTTC
1 ATTTATGTTCGTTC
*
8082404 GTTTATGT
1 ATTTATGT
8082412 AGGCCTGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.14, C:0.08, G:0.17, T:0.61
Consensus pattern (14 bp):
ATTTATGTTCGTTC
Found at i:8082610 original size:13 final size:13
Alignment explanation
Indices: 8082580--8082617 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
8082570 TAAACGAACG
8082580 TAAACGAACGAAAA
1 TAAACGAAC-AAAA
*
8082594 TAAACGAACACAA
1 TAAACGAACAAAA
8082607 TAAACGAACAA
1 TAAACGAACAA
8082618 CACAAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.63, C:0.18, G:0.11, T:0.08
Consensus pattern (13 bp):
TAAACGAACAAAA
Found at i:8082903 original size:14 final size:14
Alignment explanation
Indices: 8082884--8082946 Score: 50
Period size: 14 Copynumber: 4.9 Consensus size: 14
8082874 CTGTTCTAAC
8082884 ATAAATGAACGAAT
1 ATAAATGAACGAAT
8082898 ATAAATGAAC----
1 ATAAATGAACGAAT
*
8082908 ATAAATGAACGAAC
1 ATAAATGAACGAAT
8082922 AT--AT-AATCGAAT
1 ATAAATGAA-CGAAT
*
8082934 GTAAATGAACGAA
1 ATAAATGAACGAA
8082947 CGAGTCCTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 16
0.68 0.04 0.28
Matches are distributed among these distances:
10 10 0.26
11 2 0.05
12 7 0.18
14 18 0.46
15 2 0.05
ACGTcount: A:0.56, C:0.10, G:0.14, T:0.21
Consensus pattern (14 bp):
ATAAATGAACGAAT
Found at i:8082939 original size:26 final size:24
Alignment explanation
Indices: 8082881--8082947 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
8082871 CCTCTGTTCT
*
8082881 AACATAAATGAACGAATATAAATG
1 AACATAAATGAACGAACATAAATG
8082905 AACATAAATGAACGAACATATAATCG
1 AACATAAATGAACGAACATA-AAT-G
**
8082931 AATGTAAATGAACGAAC
1 AACATAAATGAACGAAC
8082948 GAGTCCTTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 19 0.50
25 3 0.08
26 16 0.42
ACGTcount: A:0.55, C:0.12, G:0.13, T:0.19
Consensus pattern (24 bp):
AACATAAATGAACGAACATAAATG
Found at i:8083306 original size:23 final size:24
Alignment explanation
Indices: 8083268--8083337 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 24
8083258 AACAATTATT
* *
8083268 TTCATTTATGTTCGTTTATGTTCA
1 TTCATTTGTGTTCGTTTAAGTTCA
* *
8083292 TTTA-TTGTGTTCGTTTAAGTTCG
1 TTCATTTGTGTTCGTTTAAGTTCA
* *
8083315 TTCATTTGTGTTCATTTACGTTC
1 TTCATTTGTGTTCGTTTAAGTTC
8083338 GCATATGTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 19 0.50
24 19 0.50
ACGTcount: A:0.14, C:0.13, G:0.16, T:0.57
Consensus pattern (24 bp):
TTCATTTGTGTTCGTTTAAGTTCA
Found at i:8083332 original size:24 final size:24
Alignment explanation
Indices: 8083268--8083404 Score: 88
Period size: 24 Copynumber: 5.8 Consensus size: 24
8083258 AACAATTATT
* * *
8083268 TTCATTTATGTTCGTTTATGTTCA
1 TTCATTTGTGTTCGTTTAAGTTCG
*
8083292 TTTA-TTGTGTTCGTTTAAGTTCG
1 TTCATTTGTGTTCGTTTAAGTTCG
* *
8083315 TTCATTTGTGTTCATTTACGTTCG
1 TTCATTTGTGTTCGTTTAAGTTCG
* *
8083339 --CATATGT-TT-GTTTACA-TCCG
1 TTCATTTGTGTTCGTTTA-AGTTCG
* **
8083359 TTCATTTATGTTCGTTCATTTGTGTTCG
1 TTCA-TT-TG-T-GTTCGTTTAAGTTCG
8083387 TTCATTTGTGTTCGTTTA
1 TTCATTTGTGTTCGTTTA
8083405 TCATTTAAAT
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
20 7 0.08
21 2 0.02
22 8 0.10
23 20 0.24
24 29 0.35
25 2 0.02
26 2 0.02
27 4 0.05
28 10 0.12
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (24 bp):
TTCATTTGTGTTCGTTTAAGTTCG
Found at i:8083374 original size:14 final size:14
Alignment explanation
Indices: 8083357--8083402 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
8083347 TGTTTACATC
*
8083357 CGTTCATTTATGTT
1 CGTTCATTTGTGTT
8083371 CGTTCATTTGTGTT
1 CGTTCATTTGTGTT
8083385 CGTTCATTTGTGTT
1 CGTTCATTTGTGTT
8083399 CGTT
1 CGTT
8083403 TATCATTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.09, C:0.15, G:0.20, T:0.57
Consensus pattern (14 bp):
CGTTCATTTGTGTT
Found at i:8083952 original size:21 final size:21
Alignment explanation
Indices: 8083901--8083953 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
8083891 ATTATGACTA
8083901 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
8083922 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
8083943 TCGCAATGCGA
1 TCGCAATGCGA
8083954 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:8083990 original size:21 final size:20
Alignment explanation
Indices: 8083943--8083996 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
8083933 TTTTCCCAAT
*
8083943 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
* **
8083963 TCACAATGCGAATTTGGAAAA
1 TCGCAATGCGAA-TAAGAAAA
8083984 TCGCAATGC-AATA
1 TCGCAATGCGAATA
8083997 CTGACTATCG
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 1 0.04
20 13 0.48
21 13 0.48
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:8084038 original size:21 final size:21
Alignment explanation
Indices: 8084004--8084076 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
8083994 ATACTGACTA
* *
8084004 TCGCAATGCAATTTTCCTAAT
1 TCGCAATGCGATTTTCATAAT
* * *
8084025 TCGCATTGCGATTTACGT-AT
1 TCGCAATGCGATTTTCATAAT
**
8084045 TCGCGTTGCGATTTTCATAAT
1 TCGCAATGCGATTTTCATAAT
8084066 TCGCAATGCGA
1 TCGCAATGCGA
8084077 ATTAGGAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (21 bp):
TCGCAATGCGATTTTCATAAT
Found at i:8084090 original size:21 final size:21
Alignment explanation
Indices: 8084066--8084119 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
8084056 TTTTCATAAT
*
8084066 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
8084087 TCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGAAAA
8084107 TCGCAATGCGAAT
1 TCGCAATGCGAAT
8084120 CTTACTATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATTACGAAAA
Found at i:8084719 original size:19 final size:19
Alignment explanation
Indices: 8084695--8084739 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
8084685 GCAACGAGAG
*
8084695 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
*
8084714 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACAAA
8084733 AATCGCA
1 AATCGCA
8084740 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:8084757 original size:19 final size:19
Alignment explanation
Indices: 8084735--8084899 Score: 143
Period size: 19 Copynumber: 9.1 Consensus size: 19
8084725 GAAACCAAAA
*
8084735 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
8084754 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
8084768 TCTCGTTGTGATTTTCATT
1 TCGCGTTGCGATTTTCATT
8084787 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
8084806 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
8084820 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
**
8084839 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
* *
8084858 TCCGCGTTACGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
8084878 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
8084898 TC
1 TC
8084900 AACCAAAAGA
Statistics
Matches: 120, Mismatches: 14, Indels: 24
0.76 0.09 0.15
Matches are distributed among these distances:
14 19 0.16
16 5 0.04
17 6 0.05
19 59 0.49
20 30 0.25
21 1 0.01
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:8084818 original size:52 final size:52
Alignment explanation
Indices: 8084735--8084874 Score: 208
Period size: 52 Copynumber: 2.7 Consensus size: 52
8084725 GAAACCAAAA
* * **
8084735 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGTGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
8084787 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
** *
8084839 TCGCGTTGCGATAGTCATTTCCGCGTTACGATTCTC
1 TCGCGTTGCGATTTTCATTT-CGCGTTGCGATTCTC
8084875 ATTATCTCGT
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
52 66 0.82
53 14 0.17
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (52 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
Found at i:8087069 original size:21 final size:21
Alignment explanation
Indices: 8087045--8087111 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
8087035 TCATTCCTCG
8087045 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
8087066 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
8087087 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
8087108 AGAG
1 AGAG
8087112 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:8087069 original size:42 final size:42
Alignment explanation
Indices: 8086993--8087111 Score: 102
Period size: 42 Copynumber: 2.8 Consensus size: 42
8086983 GACTCGCCTG
* * * *
8086993 TCATCCCTC-AAGA-GTCCACTCCTATCATTGAAGAGGCCCCTA
1 TCAT-CCTCGAAGAGGTCC-CTCCCACCATTCAAGAGGCCACTA
* *
8087035 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCA-TCCTCGAAGAGGT-CCCTCCCACCATTCAAGAGGCCACTA
* *
8087077 TCATCGTTGAAGAGGTCCCTCCCACCATTCAAGAG
1 TCATCCTCGAAGAGGTCCCTCCCACCATTCAAGAG
8087112 CCCGATTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
41 4 0.06
42 54 0.86
43 5 0.08
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATCCTCGAAGAGGTCCCTCCCACCATTCAAGAGGCCACTA
Found at i:8088487 original size:14 final size:14
Alignment explanation
Indices: 8088468--8088503 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
8088458 ATTGTTTAAT
8088468 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
8088482 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
8088496 TGATTTGT
1 TGATTTGT
8088504 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:8088683 original size:19 final size:19
Alignment explanation
Indices: 8088608--8088674 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
8088598 AAAAAGTACT
*
8088608 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
8088627 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
8088641 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
8088660 ATCGCAACGCGAAAT
1 ATCGCAACGCGAAAT
8088675 TAAATTCGCG
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 10 0.24
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 25 0.61
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.12
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:8088701 original size:19 final size:19
Alignment explanation
Indices: 8088679--8088796 Score: 76
Period size: 19 Copynumber: 6.7 Consensus size: 19
8088669 CGAAATTAAA
8088679 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8088698 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
8088713 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8088731 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
8088746 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
8088764 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
8088783 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
8088797 AGACATTAAG
Statistics
Matches: 73, Mismatches: 15, Indels: 21
0.67 0.14 0.19
Matches are distributed among these distances:
14 17 0.23
16 6 0.08
17 6 0.08
19 34 0.47
20 10 0.14
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:8088725 original size:33 final size:33
Alignment explanation
Indices: 8088683--8088776 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
8088673 ATTAAATTCG
8088683 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
*
8088716 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
8088749 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
8088777 AGTAATTTCC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:8091086 original size:12 final size:12
Alignment explanation
Indices: 8091068--8091104 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
8091058 TCTTCGGGGA
8091068 CTTTTTCTTCTT
1 CTTTTTCTTCTT
* *
8091080 TTTTTTCTTCTA
1 CTTTTTCTTCTT
8091092 CTTTTTCTTCTT
1 CTTTTTCTTCTT
8091104 C
1 C
8091105 AGGATTATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:8091313 original size:24 final size:24
Alignment explanation
Indices: 8091279--8091332 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8091269 CTGAAACATC
*
8091279 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
8091303 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
8091327 ATCAAA
1 ATCAAA
8091333 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:8092169 original size:20 final size:20
Alignment explanation
Indices: 8092136--8092214 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
8092126 GAATAAGTAA
* *
8092136 ATCGCAATGCGATACTGACT
1 ATCGCAACGAGATACTGACT
* *
8092156 ATCGCAACGAGATAAT-ACAAA
1 ATCGCAACGAGATACTGAC--T
*
8092177 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATACTGACT
* *
8092197 TTCGCAACGAGATTCTGA
1 ATCGCAACGAGATACTGA
8092215 AAATCGCAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.04
20 30 0.62
21 14 0.29
22 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGCAACGAGATACTGACT
Found at i:8092221 original size:20 final size:20
Alignment explanation
Indices: 8092174--8092223 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
8092164 GAGATAATAC
8092174 AAAATCGCAACGAGATTCTG
1 AAAATCGCAACGAGATTCTG
***
8092194 ACTTTCGCAACGAGATTCTG
1 AAAATCGCAACGAGATTCTG
8092214 AAAATCGCAA
1 AAAATCGCAA
8092224 TCATCTTCAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (20 bp):
AAAATCGCAACGAGATTCTG
Found at i:8092462 original size:20 final size:20
Alignment explanation
Indices: 8092437--8092500 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
8092427 CAACGGGGAA
8092437 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
** ***
8092457 ATCGCAATTCG-AAATGAAAA
1 ATCGCAACGCGAAAATG-GCT
8092477 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
8092497 ATCG
1 ATCG
8092501 GAACTAGAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 4
0.70 0.22 0.09
Matches are distributed among these distances:
19 5 0.16
20 22 0.69
21 5 0.16
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:8092536 original size:19 final size:19
Alignment explanation
Indices: 8092512--8092565 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
8092502 AACTAGAAAA
8092512 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
8092531 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
8092550 TCGCATTACGATTTTC
1 TCGCATTGCGATTTTC
8092566 TCGTTGCGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:8094625 original size:20 final size:20
Alignment explanation
Indices: 8094602--8094655 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
8094592 GAAACTTAAA
8094602 ATCGCAACGCGAAAATGACC
1 ATCGCAACGCGAAAATGACC
* * *
8094622 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGCGAAAATGACC
*
8094642 ATCGCAATGCGAAA
1 ATCGCAACGCGAAA
8094656 TGCAAATCGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACC
Found at i:8094664 original size:19 final size:17
Alignment explanation
Indices: 8094642--8094732 Score: 68
Period size: 14 Copynumber: 5.4 Consensus size: 17
8094632 GGAAATGGCT
8094642 ATCGCAATGCGAAATGCAA
1 ATCGCAAT-CGAAATG-AA
*
8094661 ATCGCAA-CGACA--AA
1 ATCGCAATCGAAATGAA
*
8094675 ATCGCAATGGGAAATGAAA
1 ATCGCAAT-CGAAATG-AA
*
8094694 ATCGCAA-CGACA--AA
1 ATCGCAATCGAAATGAA
8094708 ATCGCAATACGAAATGAA
1 ATCGCAAT-CGAAATGAA
8094726 ATCGCAA
1 ATCGCAA
8094733 CGACAAAATC
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
14 18 0.32
16 7 0.12
17 7 0.12
18 9 0.16
19 16 0.28
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (17 bp):
ATCGCAATCGAAATGAA
Found at i:8094678 original size:14 final size:14
Alignment explanation
Indices: 8094659--8094748 Score: 72
Period size: 14 Copynumber: 5.8 Consensus size: 14
8094649 TGCGAAATGC
8094659 AAATCGCAACGACA
1 AAATCGCAACGACA
* *
8094673 AAATCGCAATGGGAAATGA
1 AAATCGCAA--CG--A-CA
8094692 AAATCGCAACGACA
1 AAATCGCAACGACA
*
8094706 AAATCGCAATACGAAA
1 AAATCGC-A-ACGACA
8094722 TGAAATCGCAACGACA
1 --AAATCGCAACGACA
8094738 AAATCGCAACG
1 AAATCGCAACG
8094749 CGAAACACAA
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
14 28 0.46
15 2 0.03
16 11 0.18
17 2 0.03
18 8 0.13
19 10 0.16
ACGTcount: A:0.49, C:0.22, G:0.18, T:0.11
Consensus pattern (14 bp):
AAATCGCAACGACA
Found at i:8094689 original size:33 final size:33
Alignment explanation
Indices: 8094642--8094764 Score: 185
Period size: 33 Copynumber: 3.8 Consensus size: 33
8094632 GGAAATGGCT
8094642 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
* *
8094675 ATCGCAATGGGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
*
8094708 ATCGCAATACGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGCAAATCGCAACGACAAA
* **
8094740 ATCGCAACGCGAAACACAAATCGCA
1 ATCGCAATGCGAAATGCAAATCGCA
8094765 TTGCGATTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
32 28 0.35
33 53 0.65
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (33 bp):
ATCGCAATGCGAAATGCAAATCGCAACGACAAA
Found at i:8094761 original size:65 final size:66
Alignment explanation
Indices: 8094642--8094764 Score: 187
Period size: 65 Copynumber: 1.9 Consensus size: 66
8094632 GGAAATGGCT
* * * *
8094642 ATCGCAATGCGAAATGCAAATCGCAACGACAAAATCGCAATGGGAAATGAAAATCGCAACGACAA
1 ATCGCAATACGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
8094707 A
66 A
8094708 ATCGCAATACGAAATG-AAATCGCAACGACAAAATCGCAACGCGAAA-CACAAATCGCA
1 ATCGCAATACGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCA-AAATCGCA
8094765 TTGCGATTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
64 1 0.02
65 36 0.69
66 15 0.29
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (66 bp):
ATCGCAATACGAAATGCAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
A
Found at i:8094784 original size:14 final size:14
Alignment explanation
Indices: 8094765--8094821 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
8094755 ACAAATCGCA
*
8094765 TTGCGATTTTGTCG
1 TTGCGATTTTATCG
8094779 TTGCGATTTTCATTTCG
1 TTGCGATTTT-A--TCG
8094796 CATTGCGATTTTATCG
1 --TTGCGATTTTATCG
8094812 TTGCGATTTT
1 TTGCGATTTT
8094822 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 20 0.54
16 3 0.08
17 3 0.08
18 1 0.03
19 10 0.27
ACGTcount: A:0.12, C:0.16, G:0.21, T:0.51
Consensus pattern (14 bp):
TTGCGATTTTATCG
Found at i:8094802 original size:33 final size:33
Alignment explanation
Indices: 8094760--8094837 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
8094750 GAAACACAAA
*
8094760 TCGCATTGCGATTTTGTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTATCGTTGCGATTTTCATT
8094793 TCGCATTGCGATTTTATCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTATCGTTGCGATTTTCATT
8094826 TCGCATTGCGAT
1 TCGCATTGCGAT
8094838 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.14, C:0.19, G:0.21, T:0.46
Consensus pattern (33 bp):
TCGCATTGCGATTTTATCGTTGCGATTTTCATT
Found at i:8094803 original size:19 final size:19
Alignment explanation
Indices: 8094779--8094837 Score: 83
Period size: 19 Copynumber: 3.4 Consensus size: 19
8094769 GATTTTGTCG
8094779 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
8094798 TTGCGATTTT-A--TCG--
1 TTGCGATTTTCATTTCGCA
8094812 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
8094831 TTGCGAT
1 TTGCGAT
8094838 AGCCATTTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
14 10 0.29
15 1 0.03
16 3 0.09
17 3 0.09
18 1 0.03
19 17 0.49
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:8094844 original size:19 final size:20
Alignment explanation
Indices: 8094822--8094865 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8094812 TTGCGATTTT
8094822 CATTT-CGCATTGCGATAGC
1 CATTTCCGCATTGCGATAGC
* *
8094841 CATTTCCGCGTTGCGATAGT
1 CATTTCCGCATTGCGATAGC
8094861 CATTT
1 CATTT
8094866 TCATGTTGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CATTTCCGCATTGCGATAGC
Found at i:8094873 original size:20 final size:20
Alignment explanation
Indices: 8094831--8094876 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
8094821 TCATTTCGCA
*
8094831 TTGCGATAGCCATTTCCGCG
1 TTGCGATAGCCATTTCCACG
* * *
8094851 TTGCGATAGTCATTTTCATG
1 TTGCGATAGCCATTTCCACG
8094871 TTGCGA
1 TTGCGA
8094877 AAGTAAACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCACG
Found at i:8096746 original size:20 final size:20
Alignment explanation
Indices: 8096723--8096767 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8096713 AATGAAAATT
8096723 GCAACACGAAAATGACTATC
1 GCAACACGAAAATGACTATC
* **
8096743 GCAACGCGAATTTGACTATC
1 GCAACACGAAAATGACTATC
8096763 GCAAC
1 GCAAC
8096768 GAGAAACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
GCAACACGAAAATGACTATC
Found at i:8097044 original size:22 final size:22
Alignment explanation
Indices: 8097017--8097060 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8097007 GATGGAGATA
8097017 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
8097039 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
8097061 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:8097274 original size:20 final size:20
Alignment explanation
Indices: 8097249--8097300 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
8097239 ATTATGTATT
8097249 ATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGAAAGTCAGA
*
8097269 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTCAGA
*
8097289 ATCTCGTTGCGA
1 ATCGCGTTGCGA
8097301 TTTTGTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTCAGA
Found at i:8097334 original size:20 final size:20
Alignment explanation
Indices: 8097309--8097362 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
8097299 GATTTTGTAT
8097309 TATCGCATTGCGATAGTAAA
1 TATCGCATTGCGATAGTAAA
* *
8097329 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAA
8097349 TATCGCATTGCGAT
1 TATCGCATTGCGAT
8097363 TTTCCCAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAA
Found at i:8097334 original size:61 final size:61
Alignment explanation
Indices: 8097228--8097365 Score: 188
Period size: 61 Copynumber: 2.3 Consensus size: 61
8097218 CGCTTTGAAA
* * * *
8097228 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTCAAAATCGCATTGCGAAAGTCAGT
* * * *
8097289 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGT-AAATATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTCAAA-ATCGCATTGCGAAAGTCAGT
8097350 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
8097366 CCCAATTCGC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
60 2 0.03
61 64 0.97
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (61 bp):
ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTCAAAATCGCATTGCGAAAGTCAGT
Found at i:8097381 original size:61 final size:61
Alignment explanation
Indices: 8097228--8097383 Score: 154
Period size: 61 Copynumber: 2.6 Consensus size: 61
8097218 CGCTTTGAAA
* ** * * * *
8097228 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAAAATCGCATTGCGAAAGTCAGT
* * ** * * *
8097289 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGT-AAATATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAAA-ATCGCATTGCGAAAGTCAGT
8097350 ATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCATTGCGATTTT-CCAATATCGCGTTGCGAT
8097384 TTACTTATTC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
60 2 0.03
61 75 0.95
62 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (61 bp):
ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTCAAAATCGCATTGCGAAAGTCAGT
Found at i:8097473 original size:21 final size:21
Alignment explanation
Indices: 8097433--8097473 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8097423 ACTGTAGACC
** *
8097433 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGCAACT
8097454 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATGCAAC
8097474 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCGCAACGCGAAATGCAACT
Found at i:8102637 original size:23 final size:23
Alignment explanation
Indices: 8102592--8102645 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
8102582 ATTTATCTTT
*
8102592 TAAATTTTATAAAAAATGTATATA
1 TAAATTTTATAAAAAA-GAATATA
8102616 TAAATTTTATTAAAAAA-AATATA
1 TAAATTTTA-TAAAAAAGAATATA
8102639 TAAATTT
1 TAAATTT
8102646 AAAATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 12 0.43
24 9 0.32
25 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAATTTTATAAAAAAGAATATA
Found at i:8102638 original size:25 final size:24
Alignment explanation
Indices: 8102592--8102645 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
8102582 ATTTATCTTT
**
8102592 TAAATTTTATAAAAAATGTATATA
1 TAAATTTTATAAAAAAAATATATA
*
8102616 TAAATTTTATTAAAAAAA-ATATA
1 TAAATTTTATAAAAAAAATATATA
8102639 TAAATTT
1 TAAATTT
8102646 AAAATAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 12 0.44
24 15 0.56
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TAAATTTTATAAAAAAAATATATA
Found at i:8107506 original size:33 final size:33
Alignment explanation
Indices: 8107464--8107528 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
8107454 TTCTCCAGGA
**
8107464 GGGGTCATAAAACTTTGTGACGGTAGCGGCGGC
1 GGGGTCATAAAACTAGGTGACGGTAGCGGCGGC
*
8107497 GGGGTCATAAAACTAGGTGACGGTGGCGGCGG
1 GGGGTCATAAAACTAGGTGACGGTAGCGGCGG
8107529 TGGCATCGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.17, G:0.43, T:0.18
Consensus pattern (33 bp):
GGGGTCATAAAACTAGGTGACGGTAGCGGCGGC
Found at i:8109276 original size:21 final size:22
Alignment explanation
Indices: 8109247--8109305 Score: 75
Period size: 21 Copynumber: 2.6 Consensus size: 22
8109237 TATGCAAAAA
*
8109247 AAATTAATTAAATAC-AATATT
1 AAATAAATTAAATACAAATATT
8109268 AAATAAATTAAATACAAAATATT
1 AAATAAATTAAATAC-AAATATT
*
8109291 AAATATAATAAAATA
1 AAATA-AATTAAATA
8109306 TACCTTAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 14 0.42
23 11 0.33
24 8 0.24
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATAAATTAAATACAAATATT
Found at i:8117149 original size:23 final size:24
Alignment explanation
Indices: 8117118--8117163 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
8117108 TCACAGCCCA
*
8117118 ATTTAATG-TGAGTTTTTTGTGTC
1 ATTTAATGTTGAGTTTTGTGTGTC
*
8117141 ATTTTATGTTTGAGTTTTGTGTG
1 ATTTAATG-TTGAGTTTTGTGTG
8117164 AAATTGATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
25 12 0.63
ACGTcount: A:0.15, C:0.02, G:0.24, T:0.59
Consensus pattern (24 bp):
ATTTAATGTTGAGTTTTGTGTGTC
Found at i:8121420 original size:2 final size:2
Alignment explanation
Indices: 8121413--8121437 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8121403 ATTATATCAT
8121413 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8121438 TAATGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8133516 original size:32 final size:32
Alignment explanation
Indices: 8133479--8133557 Score: 149
Period size: 32 Copynumber: 2.5 Consensus size: 32
8133469 TTTGGGATCA
8133479 TGTTGCTGTTTGAAGTTGCTGCTGTTAGGAGC
1 TGTTGCTGTTTGAAGTTGCTGCTGTTAGGAGC
8133511 TGTTGCTGTTTGAAGTTGCTGCTGTTAGGAGC
1 TGTTGCTGTTTGAAGTTGCTGCTGTTAGGAGC
*
8133543 TGTTGCTGTTAGAAG
1 TGTTGCTGTTTGAAG
8133558 CTGTAGTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.14, C:0.11, G:0.34, T:0.41
Consensus pattern (32 bp):
TGTTGCTGTTTGAAGTTGCTGCTGTTAGGAGC
Done.