Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8859806
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 41
Found at i:8133517 original size:19 final size:19
Alignment explanation
Indices: 8133493--8133550 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
8133483 GCTGTTTGAA
8133493 GTTGCTGCTGTTAGGAGCT
1 GTTGCTGCTGTTAGGAGCT
*
8133512 GTTGCTG-T-TT--GA--A
1 GTTGCTGCTGTTAGGAGCT
8133525 GTTGCTGCTGTTAGGAGCT
1 GTTGCTGCTGTTAGGAGCT
8133544 GTTGCTG
1 GTTGCTG
8133551 TTAGAAGCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 4 0.13
17 4 0.13
18 1 0.03
19 14 0.45
ACGTcount: A:0.10, C:0.14, G:0.36, T:0.40
Consensus pattern (19 bp):
GTTGCTGCTGTTAGGAGCT
Found at i:8133549 original size:16 final size:16
Alignment explanation
Indices: 8133479--8133561 Score: 94
Period size: 16 Copynumber: 5.2 Consensus size: 16
8133469 TTTGGGATCA
* *
8133479 TGTTGCTGTTTGAAGT
1 TGTTGCTGTTAGAAGC
* *
8133495 TGCTGCTGTTAGGAGC
1 TGTTGCTGTTAGAAGC
* *
8133511 TGTTGCTGTTTGAAGT
1 TGTTGCTGTTAGAAGC
* *
8133527 TGCTGCTGTTAGGAGC
1 TGTTGCTGTTAGAAGC
8133543 TGTTGCTGTTAGAAGC
1 TGTTGCTGTTAGAAGC
8133559 TGT
1 TGT
8133562 AGTTTGGAGC
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 53 1.00
ACGTcount: A:0.13, C:0.12, G:0.34, T:0.41
Consensus pattern (16 bp):
TGTTGCTGTTAGAAGC
Found at i:8138836 original size:22 final size:22
Alignment explanation
Indices: 8138803--8138845 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8138793 GAAAATTTAG
8138803 ATTTTTATTATTTATG-TCATTA
1 ATTTTTATTATTT-TGATCATTA
8138825 ATTTATTA-TATTTTGATCATT
1 ATTT-TTATTATTTTGATCATT
8138846 GAACCATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.11
22 14 0.74
23 3 0.16
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.63
Consensus pattern (22 bp):
ATTTTTATTATTTTGATCATTA
Found at i:8146471 original size:2 final size:2
Alignment explanation
Indices: 8146464--8146491 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8146454 TACCATAAAA
8146464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8146492 CACAAAGACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8147952 original size:29 final size:26
Alignment explanation
Indices: 8147871--8147953 Score: 62
Period size: 29 Copynumber: 2.9 Consensus size: 26
8147861 TTAAACTGTA
8147871 AAATAAATAAAATGAATAAAT-AAATATT
1 AAATAAA-AAAA-GAATAAATGAAA-ATT
*
8147899 AAATAAAAAAA-AATAAAGAAGGAAAATT
1 AAATAAAAAAAGAAT--A-AATGAAAATT
8147927 CAAATAAAAAAAGGAATAAATTGAAAA
1 -AAATAAAAAAA-GAATAAA-TGAAAA
8147954 GAATTAAGGA
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
25 3 0.07
27 5 0.11
28 14 0.31
29 20 0.44
31 3 0.07
ACGTcount: A:0.71, C:0.01, G:0.08, T:0.19
Consensus pattern (26 bp):
AAATAAAAAAAGAATAAATGAAAATT
Found at i:8156133 original size:2 final size:2
Alignment explanation
Indices: 8156126--8156208 Score: 157
Period size: 2 Copynumber: 41.5 Consensus size: 2
8156116 AAAGAACAAG
8156126 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8156168 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8156209 CATTAATATA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8157620 original size:19 final size:19
Alignment explanation
Indices: 8157579--8157636 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
8157569 TGAAAAGAAA
*
8157579 ATAATAAAAAAAATA-AAT
1 ATAATAAAAATAATATAAT
*
8157597 A-AATAATAATAATATAAT
1 ATAATAAAAATAATATAAT
*
8157615 ATAATAAAAATTATATAAT
1 ATAATAAAAATAATATAAT
8157634 ATA
1 ATA
8157637 TACTTCAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 11 0.32
18 5 0.15
19 18 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATAAAAATAATATAAT
Found at i:8157665 original size:35 final size:34
Alignment explanation
Indices: 8157621--8157775 Score: 104
Period size: 32 Copynumber: 4.5 Consensus size: 34
8157611 TAATATAATA
* *
8157621 AAAATTATATAATATATACTTCAAAAATATTTTTT
1 AAAACTATATAATATATA-TTCAAAAATATGTTTT
* * * *
8157656 AAAACTATAT-AT-TATATTTAAAAAAAAGTTTC
1 AAAACTATATAATATATATTCAAAAATATGTTTT
* ***
8157688 AAAACTATATATTATATAGTTTTCAAA-ATGTTTT
1 AAAACTATATAATATATA-TTCAAAAATATGTTTT
* *
8157722 AAAA--ATATTATATAAGTTTTCAAAAAATATGTTTTT
1 AAAACTATATAATAT-A-TATTC-AAAAATATG-TTTT
*
8157758 AAAACTATATATTATATA
1 AAAACTATATAATATATA
8157776 ATTTTTCCAA
Statistics
Matches: 90, Mismatches: 20, Indels: 19
0.70 0.16 0.15
Matches are distributed among these distances:
32 28 0.31
33 8 0.09
34 19 0.21
35 18 0.20
36 9 0.10
37 1 0.01
38 7 0.08
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (34 bp):
AAAACTATATAATATATATTCAAAAATATGTTTT
Found at i:8157805 original size:38 final size:36
Alignment explanation
Indices: 8157651--8157932 Score: 216
Period size: 38 Copynumber: 7.9 Consensus size: 36
8157641 TCAAAAATAT
*** *
8157651 TTTTTAAAACTATATATTATAT---TTAAAAAAAAG
1 TTTTTAAAACTATATATTATATAAGTTTTCAAAATG
*
8157684 -TTTCAAAACTATATATTATAT-AGTTTTCAAAATG
1 TTTTTAAAACTATATATTATATAAGTTTTCAAAATG
8157718 -TTTT-AAA--A-ATATTATATAAGTTTTCAAAAAATATG
1 TTTTTAAAACTATATATTATATAAGTTTTC---AAA-ATG
*
8157753 TTTTTAAAACTATATATTATATAATTTTTCCAAAAATG
1 TTTTTAAAACTATATATTATATAAGTTTT-C-AAAATG
* *
8157791 TTTTTAAAATTATATATTATATAATTTTTCAAAAATG
1 TTTTTAAAACTATATATTATATAAGTTTTC-AAAATG
* * ** *
8157828 TTTTAAAAGAATTATATACCATATAAGTTTTCGAAATG
1 TTTT-TAA-AACTATATATTATATAAGTTTTCAAAATG
*
8157866 -TTTTAAAA--A-CTA-TATATAAGTTTTCAAAATG
1 TTTTTAAAACTATATATTATATAAGTTTTCAAAATG
* *
8157897 TTTTAAAAACTATATAATATATAAATGTTTTCAAAA
1 TTTTTAAAACTATATATTATAT-AA-GTTTTCAAAA
8157933 CTATATATTA
Statistics
Matches: 208, Mismatches: 19, Indels: 39
0.78 0.07 0.15
Matches are distributed among these distances:
30 9 0.04
31 25 0.12
32 29 0.14
33 4 0.02
34 14 0.07
35 7 0.03
36 11 0.05
37 20 0.10
38 48 0.23
39 25 0.12
40 15 0.07
41 1 0.00
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.44
Consensus pattern (36 bp):
TTTTTAAAACTATATATTATATAAGTTTTCAAAATG
Found at i:8157906 original size:31 final size:31
Alignment explanation
Indices: 8157848--8157912 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
8157838 ATTATATACC
*
8157848 ATATAAGTTTTCGAAATGTTTTAAAAACTAT
1 ATATAAGTTTTCAAAATGTTTTAAAAACTAT
8157879 ATATAAGTTTTCAAAATGTTTTAAAAACTAT
1 ATATAAGTTTTCAAAATGTTTTAAAAACTAT
8157910 ATA
1 ATA
8157913 ATATATAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.42
Consensus pattern (31 bp):
ATATAAGTTTTCAAAATGTTTTAAAAACTAT
Found at i:8157922 original size:27 final size:27
Alignment explanation
Indices: 8157861--8157958 Score: 101
Period size: 27 Copynumber: 3.5 Consensus size: 27
8157851 TAAGTTTTCG
*
8157861 AAATGTTTTAAAAACTATAT-ATAAGTTTT
1 AAATGTTTTAAAAACTATATAAT-A--TAT
8157890 CAAAATGTTTTAAAAACTATATAATATAT
1 --AAATGTTTTAAAAACTATATAATATAT
* *
8157919 AAATGTTTTCAAAACTATATATTATAT
1 AAATGTTTTAAAAACTATATAATATAT
*
8157946 ATAT-TTTTAAAAA
1 AAATGTTTTAAAAA
8157959 TATTTTCAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
26 8 0.13
27 28 0.46
29 2 0.03
31 21 0.34
32 2 0.03
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (27 bp):
AAATGTTTTAAAAACTATATAATATAT
Found at i:8157971 original size:38 final size:38
Alignment explanation
Indices: 8157919--8158061 Score: 103
Period size: 38 Copynumber: 3.8 Consensus size: 38
8157909 TATAATATAT
* *
8157919 AAATGTTTTC-AAAACTATATATTATATATATTTTTAA
1 AAATATTTTCAAAAACTATATATTATATATATTTTCAA
* * * * * *
8157956 AAATATTTTCAAAAACCATATAATATACAAACTTTCGA
1 AAATATTTTCAAAAACTATATATTATATATATTTTCAA
* * * *
8157994 AAATCGTTTTCTGAAAATTATATATTATAT-T-TTGTCAA
1 AAAT-ATTTTC-AAAAACTATATATTATATATATTTTCAA
* * *
8158032 AAACATTTTCACAAACTATATTACTATATA
1 AAATATTTTCAAAAACTATA-TATTATATA
8158062 CATATATATA
Statistics
Matches: 77, Mismatches: 24, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
36 7 0.09
37 21 0.27
38 31 0.40
39 5 0.06
40 13 0.17
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.41
Consensus pattern (38 bp):
AAATATTTTCAAAAACTATATATTATATATATTTTCAA
Found at i:8158841 original size:84 final size:83
Alignment explanation
Indices: 8158699--8159170 Score: 559
Period size: 84 Copynumber: 5.6 Consensus size: 83
8158689 GCTATGTTGT
* * * * *
8158699 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTTCGGTTGGCAGATAACCCTT
1 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGGCAGATAACCCTT
* *
8158764 CTCGACTTAAGCTATACTAC
64 CTCGACTTAAGTTATGCTAC
*
8158784 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGGCAGATAACCCTTC
* * * *
8158849 TAGCCTTGAGTTATGCTAT
65 TCGACTTAAGTTATGCTAC
* * * * *
8158868 AAATGATGTGCCTTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTTTGGTTGGCAGATAGCCCTT
1 AAATGATGTGCCTT-GGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGGCAGATAACCCTT
* *
8158933 CTCGACTTAAGCTATGCTGC
64 CTCGACTTAAGTTATGCTAC
* * * ** * * *
8158953 AAATGATATGTCGTT-GAACCAAGCGTAGTCTAACTCAAAGGTCTTTTGTTGGCAGATAACCCTT
1 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTGGCAGATAACCCTT
8159017 CTCGACTTAAGTTATGCTAC
64 CTCGACTTAAGTTATGCTAC
* * *
8159037 AAATAATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCT
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGGCAGATAACCCTTCT
* *
8159102 CGATTTAAGTTATGCTGC
66 CGACTTAAGTTATGCTAC
* * *
8159120 AAATAATGTGCCTTGGAGCTAAGCGTAGTCGAACTCGAAGGCCTTTGGTGG
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGG
8159171 GTACAATTCC
Statistics
Matches: 329, Mismatches: 52, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
83 88 0.27
84 159 0.48
85 79 0.24
86 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (83 bp):
AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTGGCAGATAACCCTTCT
CGACTTAAGTTATGCTAC
Found at i:8158958 original size:169 final size:169
Alignment explanation
Indices: 8158668--8159169 Score: 670
Period size: 169 Copynumber: 3.0 Consensus size: 169
8158658 TTTTATTGAG
* * * * * *
8158668 AGATAGCCCTTCTTGCCTTGAGCTATGTTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAA
1 AGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAA
* * *
8158733 CTCGAAGGTCTTCGGTTGGCAGATAACCCTTCTCGACTTAAGCTATACTACAAATGATGTGCCTT
66 CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT
*
8158798 GGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGAC
131 GGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGTGAC
8158837 AGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAA
1 AGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAA
* * * *
8158902 CTCGAGGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGTCGT
66 CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCT
* * * * * *
8158967 T-GAACCAAGCGTAGTCTAACTCAAAGGTCTTTTGTTGGC
130 TGGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGTGAC
* * * * * * * * *
8159006 AGATAACCCTTCTCGACTTAAGTTATGCTACAAATAATATGCCTT-GGAGCTGAGCGTAGTCGAA
1 AGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAA
* * *
8159070 CTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTCGATTTAAGTTATGCTGCAAATAATGTGCCTT
66 CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT
*
8159134 GGAGCTAAGCGTAGTCGAACTCGAAGG-CCTTTGGTG
131 GGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGTG
8159170 GGTACAATTC
Statistics
Matches: 289, Mismatches: 42, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
166 10 0.03
167 64 0.22
168 28 0.10
169 184 0.64
170 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (169 bp):
AGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGATGTGCCTTCGAAGCTGAGTGTAATCGAA
CTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTT
GGAGCTAAGCGTAGTCGAACTCGAAGGTCTTTTGGTGAC
Found at i:8159405 original size:110 final size:110
Alignment explanation
Indices: 8159262--8159665 Score: 565
Period size: 110 Copynumber: 3.7 Consensus size: 110
8159252 GTATTGTTTC
* * * **
8159262 GAGTCCAATATCCTTCGCTGTGAAGTTAAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
* *
8159327 ACAGCCAGCCGCCCATTCACTGTGAAGTTGAGCTTGTGTTGTCTC
66 ACAGTCAGCCGCCCATTCACTGTGAAGTTGAGCTTGTGTTGTCTT
* * * *
8159372 AAGTCTAATATCATTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTATTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
* * *
8159437 ACAGTCGGTCGCCCATTCACTGTGAAGTTGAGCTTGTATTGTCTT
66 ACAGTCAGCCGCCCATTCACTGTGAAGTTGAGCTTGTGTTGTCTT
* * *
8159482 GAGTCCAATATCTTTCGTTATGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTATTTGTTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
*** * * * *
8159547 ACAGTCAGTTTCCCCTTCACTGTAAAGTTCAACTTGTGTTGTCTT
66 ACAGTCAGCCGCCCATTCACTGTGAAGTTGAGCTTGTGTTGTCTT
* * *
8159592 GAGTCTAATATCCTTCGTTGTGAAGATGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
8159657 ACAGTCAGC
66 ACAGTCAGC
8159666 TTTTCTCGAC
Statistics
Matches: 259, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
110 259 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (110 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTG
ACAGTCAGCCGCCCATTCACTGTGAAGTTGAGCTTGTGTTGTCTT
Found at i:8165073 original size:17 final size:18
Alignment explanation
Indices: 8165051--8165088 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
8165041 AGCAAAATGA
8165051 ATAAATAATAATATA-AT
1 ATAAATAATAATATATAT
*
8165068 ATAAATTATAATATATAT
1 ATAAATAATAATATATAT
8165086 ATA
1 ATA
8165089 CTTCAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATAAATAATAATATATAT
Found at i:8165218 original size:38 final size:35
Alignment explanation
Indices: 8165126--8165415 Score: 269
Period size: 38 Copynumber: 8.1 Consensus size: 35
8165116 ATTATATTTA
* *
8165126 AAAAAGTTTTCAAAACTATATATTATAT-AGTTTTC
1 AAAATGTTTT-AAAACTATATAATATATAAGTTTTC
8165161 AAAATGTTTTAAAA--ATAT--TATATAAGTTTTC
1 AAAATGTTTTAAAACTATATAATATATAAGTTTTC
* * *
8165192 AAAAAATGTCTTTAGAACTATATATTATATAATTTTTCC
1 --AAAATGT-TTTAAAACTATATAATATATAAGTTTT-C
* *
8165231 AAAAATGTTTTTAAAATTATAT-AT-TATAATTTTTC
1 -AAAATG-TTTTAAAACTATATAATATATAAGTTTTC
*
8165266 AAAAATGTTTTAAAAGAATTATATAATATATAAGTTTTC
1 -AAAATGTTTT--AA-AACTATATAATATATAAGTTTTC
*
8165305 AAAATGTTTTAAAA--A-CT-ATATATAAGTTTTC
1 AAAATGTTTTAAAACTATATAATATATAAGTTTTC
8165336 AAAATGTTTTAAAAACTATATAATATATAAATGTTTTC
1 AAAATGTTTT-AAAACTATATAATATAT-AA-GTTTTC
8165374 AAAATGTTTTAAAAACTATATAATATATAAATGTTTTC
1 AAAATGTTTT-AAAACTATATAATATAT-AA-GTTTTC
8165412 AAAA
1 AAAA
8165416 CTATATATTA
Statistics
Matches: 224, Mismatches: 9, Indels: 41
0.82 0.03 0.15
Matches are distributed among these distances:
30 5 0.02
31 31 0.14
32 9 0.04
33 8 0.04
34 15 0.07
35 20 0.09
36 24 0.11
37 11 0.05
38 89 0.40
39 12 0.05
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (35 bp):
AAAATGTTTTAAAACTATATAATATATAAGTTTTC
Found at i:8165327 original size:106 final size:105
Alignment explanation
Indices: 8165125--8165415 Score: 305
Period size: 106 Copynumber: 2.7 Consensus size: 105
8165115 TATTATATTT
* * *
8165125 AAAAAAGTTTTCAAAACTATATATTATATAGTTTTCAAAATGTTTT-AAAA-ATAT--TATATAA
1 AAAAATGTTTTAAAAACTATATATTATA-ATTTTTCAAAATGTTTTAAAAATATATAATATATAA
*
8165186 GTTTTCAAAAAATGTCTTTAGAACTATATATTATATAATTTTTCC
65 GTTTTC--AAAATGTCTTTAGAAC-ATATATTATATAAGTTTT-C
* *
8165231 AAAAATGTTTTTAAAATTATATATTATAATTTTTCAAAAATGTTTTAAAAGAATTATATAATATA
1 AAAAATGTTTTAAAAACTATATATTATAATTTTTC-AAAATGTTTT-AAA-AA-TATATAATATA
8165296 TAAGTTTTCAAAATGT-TTTA-AA-A-ACTA-TATATAAGTTTTC
62 TAAGTTTTCAAAATGTCTTTAGAACATA-TATTATATAAGTTTTC
8165336 -AAAATGTTTTAAAAACTATATAATATATAAATGTTTTCAAAATGTTTTAAAAACTATATAATAT
1 AAAAATGTTTTAAAAACTATAT-AT-TAT-AAT-TTTTCAAAATGTTTTAAAAA-TATATAATAT
8165400 ATAAATGTTTTCAAAA
61 AT-AA-GTTTTCAAAA
8165416 CTATATATTA
Statistics
Matches: 162, Mismatches: 8, Indels: 29
0.81 0.04 0.15
Matches are distributed among these distances:
104 19 0.12
105 23 0.14
106 55 0.34
107 26 0.16
108 7 0.04
109 4 0.02
110 4 0.02
111 11 0.07
113 13 0.08
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (105 bp):
AAAAATGTTTTAAAAACTATATATTATAATTTTTCAAAATGTTTTAAAAATATATAATATATAAG
TTTTCAAAATGTCTTTAGAACATATATTATATAAGTTTTC
Found at i:8165351 original size:31 final size:31
Alignment explanation
Indices: 8165291--8165357 Score: 134
Period size: 31 Copynumber: 2.2 Consensus size: 31
8165281 GAATTATATA
8165291 ATATATAAGTTTTCAAAATGTTTTAAAAACT
1 ATATATAAGTTTTCAAAATGTTTTAAAAACT
8165322 ATATATAAGTTTTCAAAATGTTTTAAAAACT
1 ATATATAAGTTTTCAAAATGTTTTAAAAACT
8165353 ATATA
1 ATATA
8165358 ATATATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (31 bp):
ATATATAAGTTTTCAAAATGTTTTAAAAACT
Found at i:8165405 original size:27 final size:27
Alignment explanation
Indices: 8165375--8165441 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
8165365 AATGTTTTCA
8165375 AAATGTTTTAAAAACTATATAATATAT
1 AAATGTTTTAAAAACTATATAATATAT
* *
8165402 AAATGTTTTCAAAACTATATATTATAT
1 AAATGTTTTAAAAACTATATAATATAT
*
8165429 ATAT-TTTTAAAAA
1 AAATGTTTTAAAAA
8165442 TATTTTCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 8 0.22
27 28 0.78
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.43
Consensus pattern (27 bp):
AAATGTTTTAAAAACTATATAATATAT
Found at i:8165452 original size:144 final size:143
Alignment explanation
Indices: 8165154--8165421 Score: 348
Period size: 144 Copynumber: 1.8 Consensus size: 143
8165144 TATATTATAT
* *
8165154 AGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTTCAAAAAATGTCTTTAGAACTATATATTA
1 AGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTTC-AAAAATGTCTTTAAAACTATATAATA
* * * *
8165219 TATAATTTTTCCAAAAATGTTTTTAAAATTATATATTATAATTTTTCAAAAATGTTTTAAAAGAA
65 TATAATTTTTCCAAAAATGTTTTAAAAACTATATATTATAATTTTTCAAAAATATATTAAAAGAA
*
8165284 TTATATAATATATA
130 TTATATAATAAATA
8165298 AGTTTTCAAAATGTTTTAAAAACTA-TATATAAGTTTTC-AAAATGT-TTTAAAAACTATATAAT
1 AGTTTTCAAAATGTTTTAAAAA-TATTATATAAGTTTTCAAAAATGTCTTT-AAAACTATATAAT
*
8165360 ATATAAATGTTTT-C-AAAATGTTTTAAAAACTATATAATATATAAATGTTTTCAAAACTATAT
64 ATAT-AAT-TTTTCCAAAAATGTTTTAAAAACTATAT-AT-TAT-AAT-TTTTCAAAAATATAT
8165422 ATTATATATA
Statistics
Matches: 109, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
141 3 0.03
142 41 0.38
143 6 0.06
144 42 0.39
145 5 0.05
146 12 0.11
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (143 bp):
AGTTTTCAAAATGTTTTAAAAATATTATATAAGTTTTCAAAAATGTCTTTAAAACTATATAATAT
ATAATTTTTCCAAAAATGTTTTAAAAACTATATATTATAATTTTTCAAAAATATATTAAAAGAAT
TATATAATAAATA
Found at i:8165453 original size:65 final size:65
Alignment explanation
Indices: 8165268--8165465 Score: 188
Period size: 65 Copynumber: 3.0 Consensus size: 65
8165258 AATTTTTCAA
* * * *
8165268 AAATGTTTTAAAAGAATTATATAATATAT-AA-GTTTTCAAAATGTTTTAAAAACTATAT-ATAA
1 AAATGTTTT-AAA-AACTATATAATATATAAATGTTTTAAAAATATTTTAAAAACCATATAAT-A
*
8165330 GTTTT
63 --TAT
* * *
8165335 CAAAATGTTTTAAAAACTATATAATATATAAATGTTTTCAAAATGTTTTAAAAACTATATAATAT
1 --AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAAAATATTTTAAAAACCATATAATAT
8165400 AT
64 AT
* * * *
8165402 AAATGTTTTCAAAACTATATATTATATATAT-TTTTAAAAATATTTTCAAAAACCATATAGTATA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAAAATATTTT-AAAAACCATATAATATA
8165466 CAAACTTTCG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
64 13 0.11
65 43 0.37
67 16 0.14
68 5 0.04
69 37 0.32
70 2 0.02
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (65 bp):
AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAAAATATTTTAAAAACCATATAATATAT
Found at i:8165454 original size:38 final size:38
Alignment explanation
Indices: 8165402--8165548 Score: 111
Period size: 38 Copynumber: 3.8 Consensus size: 38
8165392 TATAATATAT
* *
8165402 AAATGTTTTC-AAAACTATATATTATATATATTTTTAA
1 AAATATTTTCAAAAACTATATATTATATATATTTTCAA
* * * * * *
8165439 AAATATTTTCAAAAACCATATAGTATACAAACTTTCGA
1 AAATATTTTCAAAAACTATATATTATATATATTTTCAA
* * * *
8165477 AAATCGTTTTCTGAAAATTATATATTATAT-T-TTGTCAA
1 AAAT-ATTTTC-AAAAACTATATATTATATATATTTTCAA
* *
8165515 AAACATTTTCACAAACTATATTATTATTATATAT
1 AAATATTTTCAAAAACTATA-TATTA-TATATAT
8165549 ATATATAATA
Statistics
Matches: 80, Mismatches: 23, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
36 7 0.09
37 19 0.24
38 34 0.43
39 6 0.08
40 14 0.17
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (38 bp):
AAATATTTTCAAAAACTATATATTATATATATTTTCAA
Found at i:8165587 original size:23 final size:23
Alignment explanation
Indices: 8165543--8165589 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
8165533 TATTATTATT
*
8165543 ATATATATATATAATAATAAATA
1 ATATATATATATAATAAAAAATA
8165566 ATATATATATAT-ATAACAAAATA
1 ATATATATATATAATAA-AAAATA
8165589 A
1 A
8165590 CTCCGGGCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
ATATATATATATAATAAAAAATA
Found at i:8165633 original size:9 final size:9
Alignment explanation
Indices: 8165619--8165659 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 9
8165609 TCTACAGCTG
8165619 TAAAATAAA
1 TAAAATAAA
8165628 TAAAATAAA
1 TAAAATAAA
8165637 T-AAATAAA
1 TAAAATAAA
8165645 TATTAAAT-AA
1 TA--AAATAAA
8165655 TAAAA
1 TAAAA
8165660 GAATAAAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 11 0.38
9 10 0.34
10 4 0.14
11 4 0.14
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
TAAAATAAA
Found at i:8167002 original size:9 final size:9
Alignment explanation
Indices: 8166985--8167030 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
8166975 CAAATTAATT
8166985 AAATAAATAA
1 AAAT-AATAA
8166995 AAATAATAA
1 AAATAATAA
8167004 ATAATAATAA
1 A-AATAATAA
*
8167014 TAATAATAA
1 AAATAATAA
*
8167023 TAATAATA
1 AAATAATA
8167031 TATAATACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
9 22 0.65
10 12 0.35
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AAATAATAA
Found at i:8167009 original size:3 final size:3
Alignment explanation
Indices: 8166990--8167037 Score: 69
Period size: 3 Copynumber: 15.3 Consensus size: 3
8166980 TAATTAAATA
*
8166990 AAT AAA AAT AAT AAAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
8167037 A
1 A
8167038 CATATACCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
3 35 0.85
4 6 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8167037 original size:7 final size:7
Alignment explanation
Indices: 8166997--8167117 Score: 78
Period size: 7 Copynumber: 17.3 Consensus size: 7
8166987 ATAAATAAAA
*
8166997 ATAATAA
1 ATAATAT
8167004 ATAATA-
1 ATAATAT
8167010 ATAATA-
1 ATAATAT
8167016 ATAATA-
1 ATAATAT
8167022 ATAATA-
1 ATAATAT
8167028 AT-ATAT
1 ATAATAT
8167034 AATACATAT
1 -ATA-ATAT
*
8167043 ACCAATAT
1 A-TAATAT
*
8167051 ATAAAAT
1 ATAATAT
8167058 ATAAATAAT
1 AT-AAT-AT
*
8167067 ATACT-T
1 ATAATAT
8167073 AT-ATCAT
1 ATAAT-AT
8167080 ATAATAT
1 ATAATAT
8167087 ATAATAT
1 ATAATAT
8167094 ATAATAT
1 ATAATAT
8167101 ACT-ATAT
1 A-TAATAT
8167108 AATAATAT
1 -ATAATAT
8167116 AT
1 AT
8167118 TAATTGTGTC
Statistics
Matches: 95, Mismatches: 6, Indels: 26
0.75 0.05 0.20
Matches are distributed among these distances:
5 4 0.04
6 23 0.24
7 41 0.43
8 18 0.19
9 9 0.09
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:8167103 original size:32 final size:30
Alignment explanation
Indices: 8166997--8167117 Score: 110
Period size: 28 Copynumber: 4.1 Consensus size: 30
8166987 ATAAATAAAA
* *
8166997 ATAATAAATAATAATAATA-AT-AATAATA-
1 ATAATATATAAT-ATACTATATCAATAATAT
* *
8167025 ATAATATATAATACA-TATACCAAT-ATAT
1 ATAATATATAATATACTATATCAATAATAT
*
8167053 AAAATATAAATAATATACTTATATCATATAATAT
1 ATAATAT--ATAATATAC-TATATCA-ATAATAT
8167087 ATAATATATAATATACTATAT-AATAATAT
1 ATAATATATAATATACTATATCAATAATAT
8167116 AT
1 AT
8167118 TAATTGTGTC
Statistics
Matches: 77, Mismatches: 7, Indels: 17
0.76 0.07 0.17
Matches are distributed among these distances:
26 2 0.03
27 6 0.08
28 20 0.26
29 9 0.12
30 8 0.10
31 5 0.06
32 15 0.19
33 2 0.03
34 10 0.13
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (30 bp):
ATAATATATAATATACTATATCAATAATAT
Found at i:8167754 original size:25 final size:25
Alignment explanation
Indices: 8167726--8167774 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8167716 TTTTAACTCG
8167726 AAAACTTTCAAATTAAGTTCAATCA
1 AAAACTTTCAAATTAAGTTCAATCA
* *
8167751 AAAACTTTCGAATTGAGTTCAATC
1 AAAACTTTCAAATTAAGTTCAATC
8167775 TAATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (25 bp):
AAAACTTTCAAATTAAGTTCAATCA
Found at i:8169326 original size:15 final size:15
Alignment explanation
Indices: 8169306--8169337 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8169296 GAAGCCGCGA
8169306 AGATTCGGCGACTGG
1 AGATTCGGCGACTGG
8169321 AGATTCGGCGACTGG
1 AGATTCGGCGACTGG
8169336 AG
1 AG
8169338 GGCGAGTGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.41, T:0.19
Consensus pattern (15 bp):
AGATTCGGCGACTGG
Found at i:8174158 original size:2 final size:2
Alignment explanation
Indices: 8174151--8174180 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8174141 TTCTGTTCCA
8174151 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8174181 GTCATAATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8176881 original size:63 final size:63
Alignment explanation
Indices: 8176782--8176911 Score: 260
Period size: 63 Copynumber: 2.1 Consensus size: 63
8176772 CCTGCGCTTG
8176782 CGTCGCATACCCGAGAGCCTGAGAGCCTGTTGTGGCTTATCATTCATCAAGTAAGACAAGCAA
1 CGTCGCATACCCGAGAGCCTGAGAGCCTGTTGTGGCTTATCATTCATCAAGTAAGACAAGCAA
8176845 CGTCGCATACCCGAGAGCCTGAGAGCCTGTTGTGGCTTATCATTCATCAAGTAAGACAAGCAA
1 CGTCGCATACCCGAGAGCCTGAGAGCCTGTTGTGGCTTATCATTCATCAAGTAAGACAAGCAA
8176908 CGTC
1 CGTC
8176912 TGGAATAGAC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (63 bp):
CGTCGCATACCCGAGAGCCTGAGAGCCTGTTGTGGCTTATCATTCATCAAGTAAGACAAGCAA
Found at i:8184185 original size:12 final size:12
Alignment explanation
Indices: 8184168--8184193 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8184158 ACCTGCTCAG
8184168 GACGACGATGAT
1 GACGACGATGAT
8184180 GACGACGATGAT
1 GACGACGATGAT
8184192 GA
1 GA
8184194 TGGTGACGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (12 bp):
GACGACGATGAT
Found at i:8184218 original size:18 final size:18
Alignment explanation
Indices: 8184175--8184218 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8184165 CAGGACGACG
* *
8184175 ATGATGACGACGATGATG
1 ATGATGACGACGACGATA
*
8184193 ATGGTGACGACGACGATA
1 ATGATGACGACGACGATA
8184211 ATGATGAC
1 ATGATGAC
8184219 AGTGAGGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (18 bp):
ATGATGACGACGACGATA
Found at i:8187426 original size:50 final size:50
Alignment explanation
Indices: 8187338--8187470 Score: 121
Period size: 51 Copynumber: 2.6 Consensus size: 50
8187328 CCCTACGTGG
* *
8187338 CGTATAGCGC-GTATCAAGGGGCGCGCTATACC-CCACGTGTAC-CC-AGTCAA
1 CGTATAGCGCGGT-TC-AGGGGCGCGCT-TTCCTCCACGTG-ACGCCAAATCAA
* *
8187388 CGTATAGCGCGGTTCAGGGTGCGCGCTTTCCTCTACGTGACGCCAAATCAG
1 CGTATAGCGCGGTTCAGGG-GCGCGCTTTCCTCCACGTGACGCCAAATCAA
* * *
8187439 CATATAACGCGGTGCAGGGGGCGCGCTTTCCT
1 CGTATAGCGCGGTTCA-GGGGCGCGCTTTCCT
8187471 GCTAAGGATG
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
49 9 0.13
50 27 0.39
51 31 0.44
52 3 0.04
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (50 bp):
CGTATAGCGCGGTTCAGGGGCGCGCTTTCCTCCACGTGACGCCAAATCAA
Found at i:8192438 original size:13 final size:14
Alignment explanation
Indices: 8192414--8192442 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8192404 CTTTGACTTA
8192414 TTATTATTTAAAAT
1 TTATTATTTAAAAT
8192428 TTATT-TTTAAAAT
1 TTATTATTTAAAAT
8192441 TT
1 TT
8192443 TTAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTATTTAAAAT
Found at i:8196296 original size:2 final size:2
Alignment explanation
Indices: 8196289--8196347 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
8196279 CAATCCAAGA
8196289 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8196331 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
8196348 ATAATTGAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8197373 original size:18 final size:19
Alignment explanation
Indices: 8197334--8197377 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
8197324 AATCTAAAAT
*
8197334 ATAAATATTAAATTATTCA
1 ATAAATATTAAATTATTAA
8197353 ATAAATA-TAAA-TATTAAA
1 ATAAATATTAAATTATT-AA
8197371 ATAAATA
1 ATAAATA
8197378 GAATAGATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 12 0.52
19 7 0.30
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
ATAAATATTAAATTATTAA
Found at i:8198083 original size:20 final size:20
Alignment explanation
Indices: 8198060--8198285 Score: 111
Period size: 20 Copynumber: 11.2 Consensus size: 20
8198050 TAATCACAAA
*
8198060 GCGAATATGAAAATCGCAAC
1 GCGAATACGAAAATCGCAAC
* *
8198080 GCGAACA-TATAAATCGCAAC
1 GCGAATACGA-AAATCGCAAC
* ** *
8198100 GCG-ATTCTGACTATCGTAAC
1 GCGAATAC-GAAAATCGCAAC
* * *
8198120 GAGTATCCGTAAAATCGCAAC
1 GCGAATACG-AAAATCGCAAC
* * * *
8198141 ACGTATCCGTAAATCGCAAC
1 GCGAATACGAAAATCGCAAC
8198161 GAC-AATACGTAAAATCGCAAC
1 G-CGAATACG-AAAATCGCAAC
*
8198182 GAC-AATACGTAAATCGCAAC
1 G-CGAATACGAAAATCGCAAC
* *
8198202 GCGTAT-CTGTAAATCGCAAC
1 GCGAATAC-GAAAATCGCAAC
* * *
8198222 GAGAATACGTAAATCGCAAT
1 GCGAATACGAAAATCGCAAC
* * * * *
8198242 GCGTATCCGTAAATCGTAAT
1 GCGAATACGAAAATCGCAAC
* *
8198262 GCGAATACGTAAATCGTAAC
1 GCGAATACGAAAATCGCAAC
8198282 GCGA
1 GCGA
8198286 TTTTTTAAAG
Statistics
Matches: 164, Mismatches: 32, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
19 4 0.02
20 120 0.73
21 40 0.24
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (20 bp):
GCGAATACGAAAATCGCAAC
Found at i:8198229 original size:40 final size:41
Alignment explanation
Indices: 8198112--8198284 Score: 183
Period size: 40 Copynumber: 4.3 Consensus size: 41
8198102 GATTCTGACT
* * * *
8198112 ATCGTAACGAGTATCCGTAAAATCGCAAC-ACGTATCCGTAA
1 ATCGCAACGCGTATCCGTAAAATCGCAACGA-GAATACGTAA
* * *
8198153 ATCGCAACGAC-AATACGTAAAATCGCAACGACAATACGTAA
1 ATCGCAACG-CGTATCCGTAAAATCGCAACGAGAATACGTAA
*
8198194 ATCGCAACGCGTATCTGT-AAATCGCAACGAGAATACGTAA
1 ATCGCAACGCGTATCCGTAAAATCGCAACGAGAATACGTAA
* * * *
8198234 ATCGCAATGCGTATCCGT-AAATCGTAATGCGAATACGTAA
1 ATCGCAACGCGTATCCGTAAAATCGCAACGAGAATACGTAA
*
8198274 ATCGTAACGCG
1 ATCGCAACGCG
8198285 ATTTTTTAAA
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
40 66 0.59
41 44 0.40
42 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGTATCCGTAAAATCGCAACGAGAATACGTAA
Found at i:8198274 original size:60 final size:60
Alignment explanation
Indices: 8198131--8198282 Score: 164
Period size: 60 Copynumber: 2.5 Consensus size: 60
8198121 AGTATCCGTA
* *
8198131 AAATCGCAACACGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGACAATACGT
1 AAATCGCAACGCGAAT-CGTAAATCGCAACGACAATACGTAAAATCGCAACGACAATACGT
* * * * *
8198192 AAATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGT-AAATCGCAATG-CGTATCCGT
1 AAATCGCAACGCGAATC-GTAAATCGCAACGACAATACGTAAAATCGCAACGAC-AATACGT
* * *
8198252 AAATCGTAATGCGAATACGTAAATCGTAACG
1 AAATCGCAACGCGAAT-CGTAAATCGCAACG
8198283 CGATTTTTTA
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
59 1 0.01
60 41 0.52
61 37 0.47
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (60 bp):
AAATCGCAACGCGAATCGTAAATCGCAACGACAATACGTAAAATCGCAACGACAATACGT
Found at i:8198795 original size:21 final size:21
Alignment explanation
Indices: 8198754--8198812 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
8198744 TTCTAAACTT
8198754 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
8198774 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
8198795 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
8198813 TCGCAACGCG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 11 0.33
21 22 0.67
ACGTcount: A:0.51, C:0.17, G:0.20, T:0.12
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:8198892 original size:19 final size:19
Alignment explanation
Indices: 8198868--8198924 Score: 96
Period size: 19 Copynumber: 2.9 Consensus size: 19
8198858 GCGATTCTCT
8198868 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
8198887 CGTTGCGATTTTCATTCTCT
1 CGTTGCGATTTTCATT-TCG
8198907 CGTTGCGATTTTCATTTC
1 CGTTGCGATTTTCATTTC
8198925 AACCAAAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.49
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:8198895 original size:33 final size:34
Alignment explanation
Indices: 8198837--8198924 Score: 90
Period size: 39 Copynumber: 2.5 Consensus size: 34
8198827 CAAAATCGCA
*
8198837 TTGCGATTTTAATTTCGCTACGCG-ATTCTCTCG
1 TTGCGATTTTCATTTCGCTACGCGTATTCTCTCG
*
8198870 TTGCGATTTTCATTTCGCGT-TGCGATTTTCATTCTCTCG
1 TTGCGATTTTCATTTCGC-TACGCG----T-ATTCTCTCG
8198909 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
8198925 AACCAAAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
33 20 0.43
34 1 0.02
39 25 0.54
ACGTcount: A:0.12, C:0.23, G:0.17, T:0.48
Consensus pattern (34 bp):
TTGCGATTTTCATTTCGCTACGCGTATTCTCTCG
Found at i:8198912 original size:20 final size:20
Alignment explanation
Indices: 8198861--8198922 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
8198851 TCGCTACGCG
8198861 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
8198881 ATT-TCGCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
8198900 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
8198920 ATT
1 ATT
8198923 TCAACCAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 18 0.46
20 21 0.54
ACGTcount: A:0.11, C:0.23, G:0.16, T:0.50
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:8200951 original size:21 final size:21
Alignment explanation
Indices: 8200927--8200993 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
8200917 TCATTCTTTG
*
8200927 AGAGTCCCCTCCCACCGTTCA
1 AGAGGCCCCTCCCACCGTTCA
* ** * *
8200948 AGAGGCCACTGTCATCGTTGA
1 AGAGGCCCCTCCCACCGTTCA
* *
8200969 AGAGGCCCATCCCACCATTCA
1 AGAGGCCCCTCCCACCGTTCA
8200990 AGAG
1 AGAG
8200994 CCCGTTTCAC
Statistics
Matches: 33, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.25, C:0.36, G:0.21, T:0.18
Consensus pattern (21 bp):
AGAGGCCCCTCCCACCGTTCA
Found at i:8200951 original size:42 final size:42
Alignment explanation
Indices: 8200884--8200993 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
8200874 GTCATCCCTC
* * * * * *
8200884 AAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCTTTG
1 AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCA-TCGTTG
*
8200927 -AGAGTCCCCTCCCACCGTTCAAGAGGCCACTGTCATCGTTG
1 AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCATCGTTG
* * *
8200968 AAGAGGCCCATCCCACCATTCAAGAG
1 AAGAGTCCCCTCCCACCGTTCAAGAG
8200994 CCCGTTTCAC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
41 5 0.09
42 51 0.91
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (42 bp):
AAGAGTCCCCTCCCACCGTTCAAGAGGCCACTATCATCGTTG
Found at i:8202360 original size:14 final size:14
Alignment explanation
Indices: 8202338--8202374 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
8202328 GATTGTTTAA
8202338 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
8202352 ATT-ATTTGTAAAAG
1 -TTGATTTGTAAAAG
8202366 TTGATTTGT
1 TTGATTTGT
8202375 TTAATTGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 17 0.81
15 2 0.10
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:8202503 original size:19 final size:19
Alignment explanation
Indices: 8202481--8202539 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
8202471 AAAAATGACT
8202481 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
8202500 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
8202514 ATCGCAATGCGAAATTAAA
1 ATCGCAATGCGAAATGAAA
8202533 ATCGCAA
1 ATCGCAA
8202540 CGACAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 16 0.50
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:8202523 original size:33 final size:33
Alignment explanation
Indices: 8202481--8202560 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
8202471 AAAAATGACT
* *
8202481 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
8202514 ATCGCAATGCGAAATTAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
8202547 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
8202561 CTAAATTCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:8202594 original size:19 final size:19
Alignment explanation
Indices: 8202572--8202703 Score: 86
Period size: 19 Copynumber: 7.4 Consensus size: 19
8202562 TAAATTCGCG
8202572 TTGCGATTTTCATTTTGCA
1 TTGCGATTTTCATTTTGCA
** *
8202591 TTGCGA--TTC--CCT-CG
1 TTGCGATTTTCATTTTGCA
* *
8202605 TTACGATTTTCATTTCGCA
1 TTGCGATTTTCATTTTGCA
*
8202624 TTGCGA--TTC--TCT-CA
1 TTGCGATTTTCATTTTGCA
*
8202638 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTTGCA
** * *
8202657 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTT-TGCA
8202677 TTGCGATTTTCATTTTGCA
1 TTGCGATTTTCATTTTGCA
8202696 TTGCGATT
1 TTGCGATT
8202704 CTCTCGTTGC
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
14 14 0.17
15 2 0.02
16 6 0.07
17 6 0.07
18 1 0.01
19 37 0.45
20 16 0.20
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTTGCA
Found at i:8202617 original size:33 final size:33
Alignment explanation
Indices: 8202570--8202716 Score: 177
Period size: 33 Copynumber: 4.3 Consensus size: 33
8202560 ACTAAATTCG
*
8202570 CGTTGCGATTTTCATTTTGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
8202603 CGTTACGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
* *
8202636 CATTGCGATTTTCATTTCGCATTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTTCGCATTGCGAT--TC----CCT
* *
8202675 CGTTGCGATTTTCATTTTGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
8202708 CGTTGCGAT
1 CGTTGCGAT
8202717 AGTAATTTCC
Statistics
Matches: 97, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
33 66 0.68
35 2 0.02
37 2 0.02
39 27 0.28
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
Found at i:8202682 original size:20 final size:19
Alignment explanation
Indices: 8202647--8202737 Score: 66
Period size: 20 Copynumber: 4.9 Consensus size: 19
8202637 ATTGCGATTT
*
8202647 TCATTTCGCATTGCGATAG
1 TCATTTCGCGTTGCGATAG
**
8202666 TCATTTCCGCGTTGCGATTT
1 TCATTT-CGCGTTGCGATAG
* *
8202686 TCATTTTGCATTGCGAT--
1 TCATTTCGCGTTGCGATAG
*
8202703 TC---TCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATAG
*
8202719 TAATTTCCGCGTTGCGATA
1 TCATTT-CGCGTTGCGATA
8202738 AACATTAAGA
Statistics
Matches: 55, Mismatches: 10, Indels: 13
0.71 0.13 0.17
Matches are distributed among these distances:
14 9 0.16
16 1 0.02
17 2 0.04
19 16 0.29
20 27 0.49
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (19 bp):
TCATTTCGCGTTGCGATAG
Found at i:8202683 original size:53 final size:52
Alignment explanation
Indices: 8202568--8202736 Score: 157
Period size: 53 Copynumber: 3.2 Consensus size: 52
8202558 AAACTAAATT
* * * * **
8202568 CGCGTTGCGATTTTCATTTTGCATTGCGATTCCCTCGTTACGATTTTCATTT-
1 CGCGTTGCGATTTTCA-TTTGCATTGCGATTCTCGCATTGCGATAGTCATTTC
* *
8202620 CGCATTGCGATTCTCTCA-TTGCGATTTTC-ATT-TCGCATTGCGATAGTCATTTC
1 CGCGTTGCGATT-T-TCATTTGC-A-TTGCGATTCTCGCATTGCGATAGTCATTTC
* * *
8202673 CGCGTTGCGATTTTCATTTTGCATTGCGATTCTCTCGTTGCGATAGTAATTTC
1 CGCGTTGCGATTTTCA-TTTGCATTGCGATTCTCGCATTGCGATAGTCATTTC
8202726 CGCGTTGCGAT
1 CGCGTTGCGAT
8202737 AAACATTAAG
Statistics
Matches: 95, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
51 6 0.06
52 34 0.36
53 49 0.52
54 6 0.06
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (52 bp):
CGCGTTGCGATTTTCATTTGCATTGCGATTCTCGCATTGCGATAGTCATTTC
Found at i:8202705 original size:72 final size:66
Alignment explanation
Indices: 8202572--8202716 Score: 191
Period size: 72 Copynumber: 2.1 Consensus size: 66
8202562 TAAATTCGCG
* *
8202572 TTGCGATTTTCATTTTGCATTGCGATTCCCTCGTTACGATTTTCATTTCGCATTGCGATTCTCTC
1 TTGCGATTTTCATTTCGCATTGCGATTCCCGCGTTACGATTTTCATTTCGCATTGCGATTCTCTC
8202637 A
66 A
* *
8202638 TTGCGATTTTCATTTCGCATTGCGATAGTCATTTCCGCGTTGCGATTTTCATTTTGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT--TC----CCGCGTTACGATTTTCATTTCGCATTGCGAT
*
8202703 TCTCTCG
60 TCTCTCA
8202710 TTGCGAT
1 TTGCGAT
8202717 AGTAATTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
66 25 0.37
68 2 0.03
72 41 0.60
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (66 bp):
TTGCGATTTTCATTTCGCATTGCGATTCCCGCGTTACGATTTTCATTTCGCATTGCGATTCTCTC
A
Found at i:8202725 original size:72 final size:73
Alignment explanation
Indices: 8202603--8202737 Score: 200
Period size: 72 Copynumber: 1.9 Consensus size: 73
8202593 GCGATTCCCT
** *
8202603 CGTTACGATTTTCATTTCGCATTGCGATTCTCTCATTGCGATTTTCATTT-CGCATTGCGATAGT
1 CGTTACGATTTTCATTTCGCATTGCGATTCTCTCATTGCGATAGTAATTTCCGCATTGCGATAGT
8202667 CATTTCCG
66 CATTTCCG
* * * *
8202675 CGTTGCGATTTTCATTTTGCATTGCGATTCTCTCGTTGCGATAGTAATTTCCGCGTTGCGATA
1 CGTTACGATTTTCATTTCGCATTGCGATTCTCTCATTGCGATAGTAATTTCCGCATTGCGATA
8202738 AACATTAAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
72 44 0.80
73 11 0.20
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.42
Consensus pattern (73 bp):
CGTTACGATTTTCATTTCGCATTGCGATTCTCTCATTGCGATAGTAATTTCCGCATTGCGATAGT
CATTTCCG
Found at i:8202782 original size:20 final size:20
Alignment explanation
Indices: 8202709--8202782 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 20
8202699 CGATTCTCTC
* *
8202709 GTTGCGATAGTAATTTCCGC
1 GTTGCGATAGTCATTTCCGT
** **
8202729 GTTGCGATAAACA-TTAAGAT
1 GTTGCGATAGTCATTTCCG-T
8202749 GATTGCGA-ACGTCATTTCCGT
1 G-TTGCGATA-GTCATTTCCGT
8202770 GTTGCGATAGTCA
1 GTTGCGATAGTCA
8202783 AATGAATTCC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.56
21 11 0.28
22 3 0.08
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (20 bp):
GTTGCGATAGTCATTTCCGT
Found at i:8205042 original size:14 final size:14
Alignment explanation
Indices: 8205023--8205049 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8205013 TCCCGTGTCA
8205023 TTTTCTTTGGGGAC
1 TTTTCTTTGGGGAC
8205037 TTTTCTTTGGGGA
1 TTTTCTTTGGGGA
8205050 TTTCTTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.11, G:0.30, T:0.52
Consensus pattern (14 bp):
TTTTCTTTGGGGAC
Found at i:8205276 original size:24 final size:24
Alignment explanation
Indices: 8205249--8205302 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
8205239 TTGAAAAATC
8205249 ATCAAAATCC-GAGTATTGACCAAG
1 ATCAAAATCCAG-GTATTGACCAAG
*
8205273 ATCAAAGTCCAGGTATTGACCAAG
1 ATCAAAATCCAGGTATTGACCAAG
8205297 ATCAAA
1 ATCAAA
8205303 TTTTGAATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 27 0.96
25 1 0.04
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCAGGTATTGACCAAG
Found at i:8206228 original size:60 final size:60
Alignment explanation
Indices: 8206164--8206336 Score: 240
Period size: 60 Copynumber: 2.9 Consensus size: 60
8206154 CAGAATCTCG
* * *
8206164 TTGCGATTTACAGATTCGCATTGTGATTTACGTATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTACAGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCA
* * * *
8206224 TTGCGATTTACAGATACGTATTGCGATTTACGTATTCTCGTTGCGATTTACGTATTCTCG
1 TTGCGATTTACAGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCA
* *
8206284 TTGCGATTTACGGATACGCGTTGCGATTTTACGTATT-GTCGTTGCGATTTACG
1 TTGCGATTTACAGATACGCATTGCGA-TTTACGTATTCG-CGTTGCGATTTACG
8206337 GATACGCGTT
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
60 76 0.76
61 24 0.24
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (60 bp):
TTGCGATTTACAGATACGCATTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCA
Found at i:8206346 original size:20 final size:20
Alignment explanation
Indices: 8206162--8206412 Score: 206
Period size: 20 Copynumber: 12.5 Consensus size: 20
8206152 GTCAGAATCT
8206162 CGTTGCGATTTACAG-ATTCG
1 CGTTGCGATTTAC-GTATTCG
* *
8206182 CATTGTGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
8206202 CATTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
* *
8206222 CATTGCGATTTACAG-ATACG
1 CGTTGCGATTTAC-GTATTCG
** *
8206242 TATTGCGATTTACGTATTCT
1 CGTTGCGATTTACGTATTCG
*
8206262 CGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACGTATTCG
* *
8206282 CGTTGCGATTTACGGATACG
1 CGTTGCGATTTACGTATTCG
8206302 CGTTGCGATTTTACGTATT-G
1 CGTTGCGA-TTTACGTATTCG
* *
8206322 TCGTTGCGATTTACGGATACG
1 -CGTTGCGATTTACGTATTCG
* * *
8206343 CGTTGTGATAGT-CAG-AATCG
1 CGTTGCGAT-TTAC-GTATTCG
** *
8206363 CGTTGCGATTTATATGTTCG
1 CGTTGCGATTTACGTATTCG
** * *
8206383 CGTTATGATTTTCATATTCG
1 CGTTGCGATTTACGTATTCG
8206403 CGTTGCGATT
1 CGTTGCGATT
8206413 ATGGAAAATC
Statistics
Matches: 188, Mismatches: 33, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.02
20 165 0.88
21 20 0.11
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.40
Consensus pattern (20 bp):
CGTTGCGATTTACGTATTCG
Found at i:8206511 original size:20 final size:19
Alignment explanation
Indices: 8206462--8206515 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
8206452 ATTATTCATA
8206462 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
8206481 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
8206502 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
8206516 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:8209049 original size:20 final size:19
Alignment explanation
Indices: 8209024--8209071 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
8209014 ATATATTGTC
8209024 TATTTTTTAAT-TTTTAATTT
1 TATTTTTTAATGTTTT--TTT
*
8209044 TATTTTTCAATGTTTTTTT
1 TATTTTTTAATGTTTTTTT
8209063 TAATTTTTT
1 T-ATTTTTT
8209072 GAATAGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.17
20 16 0.67
21 4 0.17
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (19 bp):
TATTTTTTAATGTTTTTTT
Found at i:8220667 original size:44 final size:43
Alignment explanation
Indices: 8220617--8220740 Score: 167
Period size: 44 Copynumber: 2.8 Consensus size: 43
8220607 CAACTAGAAG
* * *
8220617 CTTGAATCTTGTATCTGGTTATTTTGTTCAACATCTAAACGAAA
1 CTTGAATCTTGTATCTGATTCTTTTG-TCAACATCTAAACAAAA
* * *
8220661 TTTGAATCTTGTATCTGATTCTTTTGCTCAACATCCAAATAAAA
1 CTTGAATCTTGTATCTGATTCTTTTG-TCAACATCTAAACAAAA
8220705 CTTGAATCTTGTATCTGATTCTTTTAGTCAACATCT
1 CTTGAATCTTGTATCTGATTCTTTT-GTCAACATCT
8220741 TGATGAAGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
44 69 0.99
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (43 bp):
CTTGAATCTTGTATCTGATTCTTTTGTCAACATCTAAACAAAA
Found at i:8224855 original size:20 final size:20
Alignment explanation
Indices: 8224832--8225010 Score: 94
Period size: 20 Copynumber: 8.9 Consensus size: 20
8224822 AAAGTTTTCA
8224832 AATTCGCAACACGAATTTAG
1 AATTCGCAACACGAATTTAG
* * *
8224852 AATTCGTAACACAAAATTTGG
1 AATTCGCAACAC-GAATTTAG
* * *
8224873 AATTCGCAACACATAAGTCA-
1 AATTCGCAACAC-GAATTTAG
* * *
8224893 AATTCACAACTCGAATTTGAC
1 AATTCGCAACACGAATTT-AG
* **
8224914 AATTCGCAACACAAATTTCT
1 AATTCGCAACACGAATTTAG
** *
8224934 TTTTCGCAACACGATTTTTA-
1 AATTCGCAACACGA-ATTTAG
* *
8224954 AATTCGCAACGCGAATTT-T
1 AATTCGCAACACGAATTTAG
* ** * *
8224973 ATTTCGCAACTTGATTTTCG
1 AATTCGCAACACGAATTTAG
*
8224993 AATTCGTAACACGAATTT
1 AATTCGCAACACGAATTT
8225011 TAATTTCGCA
Statistics
Matches: 116, Mismatches: 37, Indels: 12
0.70 0.22 0.07
Matches are distributed among these distances:
19 20 0.17
20 57 0.49
21 39 0.34
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (20 bp):
AATTCGCAACACGAATTTAG
Found at i:8224930 original size:21 final size:21
Alignment explanation
Indices: 8224832--8224931 Score: 82
Period size: 21 Copynumber: 4.9 Consensus size: 21
8224822 AAAGTTTTCA
*
8224832 AATTCGCAACACGAATTT-AG
1 AATTCGCAACACAAATTTGAG
*
8224852 AATTCGTAACACAAAATTTG-G
1 AATTCGCAACAC-AAATTTGAG
* *
8224873 AATTCGCAACACATAA-GTCA-
1 AATTCGCAACACA-AATTTGAG
* * * *
8224893 AATTCACAACTCGAATTTGAC
1 AATTCGCAACACAAATTTGAG
8224914 AATTCGCAACACAAATTT
1 AATTCGCAACACAAATTT
8224932 CTTTTTCGCA
Statistics
Matches: 61, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
19 2 0.03
20 25 0.41
21 34 0.56
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (21 bp):
AATTCGCAACACAAATTTGAG
Found at i:8224980 original size:19 final size:19
Alignment explanation
Indices: 8224916--8225035 Score: 82
Period size: 20 Copynumber: 6.1 Consensus size: 19
8224906 AATTTGACAA
* *
8224916 TTCGCAACACAAATTTCTTT
1 TTCGCAACACGAATTT-TAT
* *
8224936 TTCGCAACACGATTTTTAAA
1 TTCGCAACACGAATTTT-AT
*
8224956 TTCGCAACGCGAATTTTAT
1 TTCGCAACACGAATTTTAT
** *
8224975 TTCGCAACTTG-ATTTTCGAA
1 TTCGCAACACGAATTTT--AT
*
8224995 TTCGTAACACGAATTTTAAT
1 TTCGCAACACGAATTTT-AT
*
8225015 TTCGCAAAAC-AACTTTTAT
1 TTCGCAACACGAA-TTTTAT
8225034 TT
1 TT
8225036 TCGTAACACA
Statistics
Matches: 78, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
18 5 0.06
19 17 0.22
20 51 0.65
21 5 0.06
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (19 bp):
TTCGCAACACGAATTTTAT
Found at i:8224989 original size:39 final size:39
Alignment explanation
Indices: 8224914--8225021 Score: 126
Period size: 39 Copynumber: 2.7 Consensus size: 39
8224904 CGAATTTGAC
* * *
8224914 AATTCGCAACACAAATTTCTTTTTCGCAACACGATTTTTA
1 AATTCGCAACACGAATTT-TATTTCGCAACACGATTTTCA
* ** *
8224954 AATTCGCAACGCGAATTTTATTTCGCAACTTGATTTTCG
1 AATTCGCAACACGAATTTTATTTCGCAACACGATTTTCA
*
8224993 AATTCGTAACACGAATTTTAATTTCGCAA
1 AATTCGCAACACGAATTTT-ATTTCGCAA
8225022 AACAACTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 33 0.57
40 25 0.43
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (39 bp):
AATTCGCAACACGAATTTTATTTCGCAACACGATTTTCA
Found at i:8225046 original size:20 final size:19
Alignment explanation
Indices: 8224995--8225046 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
8224985 GATTTTCGAA
8224995 TTCGTAACACGAATTTTAAT
1 TTCGTAACAC-AATTTTAAT
* * *
8225015 TTCGCAAAACAACTTTTATT
1 TTCGTAACACAA-TTTTAAT
8225035 TTCGTAACACAA
1 TTCGTAACACAA
8225047 ATGTTTTGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (19 bp):
TTCGTAACACAATTTTAAT
Found at i:8225831 original size:12 final size:12
Alignment explanation
Indices: 8225810--8225843 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8225800 ACCACATTTC
*
8225810 CAATACCAAACA
1 CAATATCAAACA
8225822 CAATATCAAACA
1 CAATATCAAACA
*
8225834 CAATCTCAAA
1 CAATATCAAA
8225844 ATCCACAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:8226000 original size:24 final size:24
Alignment explanation
Indices: 8225968--8226021 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8225958 GTATTCGAAA
*
8225968 TTTGATCTTGGTTAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
8225992 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
8226016 TTTGAT
1 TTTGAT
8226022 GATGTTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:8228307 original size:18 final size:18
Alignment explanation
Indices: 8228281--8228316 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8228271 AAGCAAAGGG
*
8228281 AAATTAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
8228299 AAATCAAAATCTCAATCA
1 AAATCAAAATCGCAATCA
8228317 CAACCGCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.19, G:0.03, T:0.22
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:8228624 original size:20 final size:20
Alignment explanation
Indices: 8228599--8228651 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
8228589 AACACAAAAA
8228599 TCGCAACTCGAAAAT-ATAAT
1 TCGCAACTCGAAAATGA-AAT
*
8228619 TCGCAACTTGAAAATGAAAT
1 TCGCAACTCGAAAATGAAAT
8228639 TCGCAACTCGAAA
1 TCGCAACTCGAAA
8228652 TCGATTTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.43, C:0.21, G:0.13, T:0.23
Consensus pattern (20 bp):
TCGCAACTCGAAAATGAAAT
Found at i:8228765 original size:74 final size:74
Alignment explanation
Indices: 8228679--8228874 Score: 261
Period size: 74 Copynumber: 2.6 Consensus size: 74
8228669 TTTCACGTTG
* * *
8228679 CGAATTTAAATATCGAGTTGCTATTTTCTTGTTGCGAATTTTATTTTCGAATTGCGAATTCGATT
1 CGAATTTGAATATCGAGTTGCGATTTTCTTGTTGCGAATTTGATTTTCGAATTGCGAATTCGATT
8228744 TTCGAGTTC
66 TTCGAGTTC
* * ** *
8228753 CGGAA-TTGAATATCGAGTTACGATTTT-TGTGTTGCGAATTTGATTTTTGCGTTGCGAATTTGA
1 C-GAATTTGAATATCGAGTTGCGATTTTCT-TGTTGCGAATTTGATTTTCGAATTGCGAATTCGA
* *
8228816 TTTTTGAGTTG
64 TTTTCGAGTTC
*
8228827 CGAATTTGAATATCGAGTTGCGATTTTCGTGTTGCGAATTTGATTTTC
1 CGAATTTGAATATCGAGTTGCGATTTTCTTGTTGCGAATTTGATTTTC
8228875 TTAAAGGTAT
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
73 4 0.04
74 98 0.93
75 3 0.03
ACGTcount: A:0.21, C:0.11, G:0.22, T:0.45
Consensus pattern (74 bp):
CGAATTTGAATATCGAGTTGCGATTTTCTTGTTGCGAATTTGATTTTCGAATTGCGAATTCGATT
TTCGAGTTC
Found at i:8228874 original size:20 final size:20
Alignment explanation
Indices: 8228709--8228849 Score: 107
Period size: 20 Copynumber: 7.3 Consensus size: 20
8228699 CTATTTTCTT
*
8228709 GTTGCGAATTTTATTTTCGA
1 GTTGCGAATTTGATTTTCGA
* *
8228729 ATTGCGAATTCGATTTTCGA
1 GTTGCGAATTTGATTTTCGA
* * *
8228749 GTTCCGGAA-TTGAATATCGA
1 GTTGC-GAATTTGATTTTCGA
* *
8228769 GTTACG-A--T--TTTT-GT
1 GTTGCGAATTTGATTTTCGA
* *
8228783 GTTGCGAATTTGATTTTTGC
1 GTTGCGAATTTGATTTTCGA
*
8228803 GTTGCGAATTTGATTTTTGA
1 GTTGCGAATTTGATTTTCGA
* *
8228823 GTTGCGAATTTGAATATCGA
1 GTTGCGAATTTGATTTTCGA
8228843 GTTGCGA
1 GTTGCGA
8228850 TTTTCGTGTT
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
14 6 0.06
15 3 0.03
17 2 0.02
18 1 0.01
19 5 0.05
20 76 0.79
21 3 0.03
ACGTcount: A:0.22, C:0.11, G:0.24, T:0.43
Consensus pattern (20 bp):
GTTGCGAATTTGATTTTCGA
Found at i:8230810 original size:21 final size:21
Alignment explanation
Indices: 8230730--8230820 Score: 94
Period size: 21 Copynumber: 4.3 Consensus size: 21
8230720 AGTATGGAAT
* *
8230730 GTGGATCCTGAACGATGGGAT
1 GTGGATCCTGAACGATGAGAG
* *
8230751 GTGGATCATGAACGATGGGAG
1 GTGGATCCTGAACGATGAGAG
* *
8230772 G-GGCCTCTTGAACGATGAGAG
1 GTGG-ATCCTGAACGATGAGAG
*
8230793 GTGGATCCTGAACAATGAGAG
1 GTGGATCCTGAACGATGAGAG
*
8230814 GTAGATC
1 GTGGATC
8230821 ATACTTCTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
20 2 0.03
21 55 0.93
22 2 0.03
ACGTcount: A:0.27, C:0.14, G:0.37, T:0.21
Consensus pattern (21 bp):
GTGGATCCTGAACGATGAGAG
Found at i:8231246 original size:63 final size:64
Alignment explanation
Indices: 8231121--8231293 Score: 187
Period size: 63 Copynumber: 2.8 Consensus size: 64
8231111 AGCACCTACC
* * *
8231121 TCATCACGTAAAGCAGCTACCTCACCACGTAAA-ACAGCTACCTCACCACGTAAAGCACCATTG
1 TCATCACGTAAAGCAGCTACCTCACTACGTAAAGACACCTACCTCATCACGTAAAGCACCATTG
* * * * *
8231184 TTATCACGTAAAACAGCTACCTCACTACGTAAAGAC-CCTACCTCATCACAG-CATGCATCATTG
1 TCATCACGTAAAGCAGCTACCTCACTACGTAAAGACACCTACCTCATCAC-GTAAAGCACCATTG
* *
8231247 TCATCACTTAAAGCA-CTGACCTCA-TCACGTAAAG-CACCTAACTCATC
1 TCATCACGTAAAGCAGCT-ACCTCACT-ACGTAAAGACACCTACCTCATC
8231294 TCATGGAGGT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
62 4 0.04
63 86 0.92
64 3 0.03
ACGTcount: A:0.34, C:0.34, G:0.11, T:0.21
Consensus pattern (64 bp):
TCATCACGTAAAGCAGCTACCTCACTACGTAAAGACACCTACCTCATCACGTAAAGCACCATTG
Found at i:8231291 original size:21 final size:21
Alignment explanation
Indices: 8231103--8231293 Score: 124
Period size: 21 Copynumber: 9.1 Consensus size: 21
8231093 TGAAATAATC
*
8231103 TCACGTAGAGCACCTACCTCA
1 TCACGTAAAGCACCTACCTCA
*
8231124 TCACGTAAAGCAGCTACCTCA
1 TCACGTAAAGCACCTACCTCA
* * *
8231145 CCACGTAAAACAGCTACCTCA
1 TCACGTAAAGCACCTACCTCA
* ** *
8231166 CCACGTAAAGCACC-ATTGTTA
1 TCACGTAAAGCACCTA-CCTCA
* *
8231187 TCACGTAAAACAGCTACCTCA
1 TCACGTAAAGCACCTACCTCA
8231208 -CTACGTAAAG-ACCCTACCTCA
1 TC-ACGTAAAGCA-CCTACCTCA
* * * **
8231229 TCACAG-CATGCATC-ATTGTCA
1 TCAC-GTAAAGCACCTA-CCTCA
*
8231250 TCACTTAAAGCA-CTGACCTCA
1 TCACGTAAAGCACCT-ACCTCA
*
8231271 TCACGTAAAGCACCTAACTCA
1 TCACGTAAAGCACCTACCTCA
8231292 TC
1 TC
8231294 TCATGGAGGT
Statistics
Matches: 129, Mismatches: 29, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
20 5 0.04
21 117 0.91
22 7 0.05
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.21
Consensus pattern (21 bp):
TCACGTAAAGCACCTACCTCA
Found at i:8231417 original size:21 final size:21
Alignment explanation
Indices: 8231393--8231495 Score: 65
Period size: 21 Copynumber: 5.0 Consensus size: 21
8231383 GTGATGGAAT
8231393 AGGTGATGGATCTCGGTGTCG
1 AGGTGATGGATCTCGGTGTCG
* * * *
8231414 AGGTG-TAGA-GTC-GTCTAG
1 AGGTGATGGATCTCGGTGTCG
*
8231432 AGGTGATGGCTCTCGGTGTCG
1 AGGTGATGGATCTCGGTGTCG
* *
8231453 AGGTG-TAGA-ATCGGCTCGAT-G
1 AGGTGATGGATCTCGG-T-G-TCG
*
8231474 AGGTGATGGATCTCGGAGTCG
1 AGGTGATGGATCTCGGTGTCG
8231495 A
1 A
8231496 AGTAGAGAAT
Statistics
Matches: 58, Mismatches: 15, Indels: 18
0.64 0.16 0.20
Matches are distributed among these distances:
18 9 0.16
19 8 0.14
20 9 0.16
21 24 0.41
22 4 0.07
23 4 0.07
ACGTcount: A:0.18, C:0.15, G:0.41, T:0.26
Consensus pattern (21 bp):
AGGTGATGGATCTCGGTGTCG
Found at i:8231495 original size:42 final size:42
Alignment explanation
Indices: 8231393--8231548 Score: 194
Period size: 42 Copynumber: 3.8 Consensus size: 42
8231383 GTGATGGAAT
* * *
8231393 AGGTGATGGATCTCGGTGTCGAGGTGTAGAGTC-G-TCTA-G
1 AGGTGATGGATCTCGGTGTCGAAGTGTAGAATCGGCTCGATG
* *
8231432 AGGTGATGGCTCTCGGTGTCGAGGTGTAGAATCGGCTCGATG
1 AGGTGATGGATCTCGGTGTCGAAGTGTAGAATCGGCTCGATG
* * *
8231474 AGGTGATGGATCTCGGAGTCGAAGTAG-AGAATTGACTCGATG
1 AGGTGATGGATCTCGGTGTCGAAGT-GTAGAATCGGCTCGATG
*
8231516 AGGTGATGGATCTCGGTGTCGAAGTGGAGAATC
1 AGGTGATGGATCTCGGTGTCGAAGTGTAGAATC
8231549 CCGTCGATGA
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 31 0.30
40 1 0.01
41 4 0.04
42 65 0.64
43 1 0.01
ACGTcount: A:0.22, C:0.13, G:0.39, T:0.26
Consensus pattern (42 bp):
AGGTGATGGATCTCGGTGTCGAAGTGTAGAATCGGCTCGATG
Found at i:8234776 original size:38 final size:38
Alignment explanation
Indices: 8234723--8234800 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
8234713 GATTGCTTAG
*
8234723 TAAATTCATGTGGTTGCTGCCAATACTGCTAAACAGTT
1 TAAATTCATGCGGTTGCTGCCAATACTGCTAAACAGTT
8234761 TAAATTCATGCGGTTGCTGCCAATACTGCTAAACAGTT
1 TAAATTCATGCGGTTGCTGCCAATACTGCTAAACAGTT
8234799 TA
1 TA
8234801 GTCTTTAACC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (38 bp):
TAAATTCATGCGGTTGCTGCCAATACTGCTAAACAGTT
Found at i:8235425 original size:22 final size:22
Alignment explanation
Indices: 8235400--8235452 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
8235390 GATGGAGGGG
*
8235400 GTCGCCGGATATGGGGACGAAT
1 GTCGCCGGATATGGAGACGAAT
*
8235422 GTCGCCGGATATGGAGACGGAT
1 GTCGCCGGATATGGAGACGAAT
*
8235444 GTCACCGGA
1 GTCGCCGGA
8235453 GAGAGTGAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.40, T:0.17
Consensus pattern (22 bp):
GTCGCCGGATATGGAGACGAAT
Found at i:8235627 original size:19 final size:19
Alignment explanation
Indices: 8235537--8235628 Score: 87
Period size: 20 Copynumber: 4.7 Consensus size: 19
8235527 CTATTTACAT
8235537 TTGTGTTGCGAAAATAAAA
1 TTGTGTTGCGAAAATAAAA
* *
8235556 GTTGTTTTGCGAAATTAAAA
1 -TTGTGTTGCGAAAATAAAA
*
8235576 TTCGTGTTGCG-AATTCAAAAA
1 TT-GTGTTGCGAAAAT--AAAA
* * *
8235597 TCGAGTTACGAAAATAAAA
1 TTGTGTTGCGAAAATAAAA
8235616 TTGTGTTGCGAAA
1 TTGTGTTGCGAAA
8235629 TTGAAACGCG
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
19 20 0.34
20 30 0.52
21 8 0.14
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.33
Consensus pattern (19 bp):
TTGTGTTGCGAAAATAAAA
Found at i:8235649 original size:59 final size:58
Alignment explanation
Indices: 8235545--8235690 Score: 161
Period size: 59 Copynumber: 2.5 Consensus size: 58
8235535 ATTTGTGTTG
* * **
8235545 CGAAAATAAAAGTTGTTTTGCGAAATTAAAATTCGTGTTGCGAATTCAAAAATCGAGTTA
1 CGAAAATAAAA-TTGTGTTGCGAAATTGAAACGCGTGTTGCGAATT-AAAAATCGAGTTA
* ** *
8235605 CGAAAATAAAATTGTGTTGCGAAATTGAAACGCGCT-TTGTGAATTAAAAATCTTGTTG
1 CGAAAATAAAATTGTGTTGCGAAATTGAAACGCG-TGTTGCGAATTAAAAATCGAGTTA
8235663 CGAAAA-AGAAATTCGTGTTGCGAAATTG
1 CGAAAATA-AAATT-GTGTTGCGAAATTG
8235691 TCAAATTCGA
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
57 1 0.01
58 21 0.28
59 41 0.55
60 12 0.16
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (58 bp):
CGAAAATAAAATTGTGTTGCGAAATTGAAACGCGTGTTGCGAATTAAAAATCGAGTTA
Found at i:8235744 original size:21 final size:22
Alignment explanation
Indices: 8235718--8235763 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
8235708 ATTTGACTTA
8235718 TGTGTTGCGAATTCCAAATT-T
1 TGTGTTGCGAATTCCAAATTCT
8235739 TGTGTTGCGAATTCCAAATTCT
1 TGTGTTGCGAATTCCAAATTCT
8235761 TGT
1 TGT
8235764 TGTGAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (22 bp):
TGTGTTGCGAATTCCAAATTCT
Found at i:8244242 original size:17 final size:18
Alignment explanation
Indices: 8244205--8244245 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
8244195 CTATTATGTA
*
8244205 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
8244223 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
8244240 TTTACT
1 TTTACT
8244246 AATATAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:8244500 original size:111 final size:111
Alignment explanation
Indices: 8244306--8244638 Score: 612
Period size: 111 Copynumber: 3.0 Consensus size: 111
8244296 TGAAAATCAT
*
8244306 ATATCTCTACACTTTGCTGATACGGTAATATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAATATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
8244371 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
*
8244417 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAATATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
8244482 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
* * *
8244528 ATATCTCGACACTTTGCTGATACAGTAATATTTTCACGTTTTAATTTAATTTAAATTGTTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAATATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
8244593 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
8244639 TTTTTGTAAT
Statistics
Matches: 215, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 215 1.00
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAATATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:8254058 original size:34 final size:34
Alignment explanation
Indices: 8253994--8254058 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
8253984 CTCAAACTAA
*
8253994 ATATCTTTCAATATTAAAATTTAAATAGATAATT
1 ATATCTTTCAATATTAAAATTCAAATAGATAATT
*
8254028 ATATCTTTTAAT-TTGAAATATTCAAA-AGATA
1 ATATCTTTCAATATT-AAA-ATTCAAATAGATA
8254059 TAAACTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 2 0.07
34 19 0.70
35 6 0.22
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.43
Consensus pattern (34 bp):
ATATCTTTCAATATTAAAATTCAAATAGATAATT
Found at i:8254143 original size:63 final size:63
Alignment explanation
Indices: 8254033--8254151 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 63
8254023 TAATTATATC
* * * * *
8254033 TTTTAATTTGAAATATTCAAAAGATATAAACTCTTTTTACTATTCAAACTTAAATATATTTTG
1 TTTTAATTTGAAAAATTCAAAAGATATAAACTATCTTTAATAATCAAACTTAAATATATTTTG
* *
8254096 TTTTAATTTGAAAAATTCAAAATGATAT-AATTATCTTTAATAATCAAATTTAAATA
1 TTTTAATTTGAAAAATTCAAAA-GATATAAACTATCTTTAATAATCAAACTTAAATA
8254152 GGTAACAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
63 43 0.90
64 5 0.10
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.45
Consensus pattern (63 bp):
TTTTAATTTGAAAAATTCAAAAGATATAAACTATCTTTAATAATCAAACTTAAATATATTTTG
Found at i:8256795 original size:19 final size:20
Alignment explanation
Indices: 8256768--8256805 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8256758 AGATAAAATA
8256768 TTTAAAATTATAA-AGAAAG
1 TTTAAAATTATAATAGAAAG
*
8256787 TTTATAATTATAATAGAAA
1 TTTAAAATTATAATAGAAA
8256806 ATCAAACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
TTTAAAATTATAATAGAAAG
Found at i:8272311 original size:17 final size:18
Alignment explanation
Indices: 8272289--8272322 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8272279 TAAGTGATTT
8272289 GATTAAAGAA-ATTAAAA
1 GATTAAAGAATATTAAAA
*
8272306 GATTAATGAATATTAAA
1 GATTAAAGAATATTAAA
8272323 GAAATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (18 bp):
GATTAAAGAATATTAAAA
Found at i:8275894 original size:22 final size:22
Alignment explanation
Indices: 8275866--8275921 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
8275856 GTCGAGGGTT
8275866 TCATAGGTCCTTCGGGACATAC
1 TCATAGGTCCTTCGGGACATAC
* *
8275888 TCATAGGTCATTCGGGACATAT
1 TCATAGGTCCTTCGGGACATAC
*
8275910 TCACAGGTCCTT
1 TCATAGGTCCTT
8275922 AGAGATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.30
Consensus pattern (22 bp):
TCATAGGTCCTTCGGGACATAC
Found at i:8282206 original size:22 final size:22
Alignment explanation
Indices: 8282181--8282233 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
8282171 GTCGAGGGTT
*
8282181 TCATAGGTCATTCGGGACATAC
1 TCATAGGTCATTCGAGACATAC
* *
8282203 TCATAGGTCCTTCGAGACATAT
1 TCATAGGTCATTCGAGACATAC
*
8282225 TCACAGGTC
1 TCATAGGTC
8282234 TTATGGACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (22 bp):
TCATAGGTCATTCGAGACATAC
Found at i:8283320 original size:130 final size:128
Alignment explanation
Indices: 8283022--8283363 Score: 363
Period size: 130 Copynumber: 2.7 Consensus size: 128
8283012 CGCAAAATGC
* * *
8283022 ATCGATACACATATATA-AAGTATTGATACTTATAATTTCGAAATCTATTACTTTAAAGTAATAG
1 ATCGATA-ACATGTATATAAGTATCGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATAG
** * * * * * *
8283086 GTTTATTTACAATGAAAATGGTAAAAGTCTATCGATATAATGATAATAGGCATAAACATCAAGT
65 GTAAATTAACAATGTACACGATAAAAGTCTATCGATATAATGAAAATAGGCATAAACATCAAGT
* * ** *
8283150 ATCGATACACATGTATA-AGGTATCGATACGTGGAATTTCGAAACCTAGTACTTTAAAGTAATAG
1 ATCGATA-ACATGTATATAAGTATCGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATAG
* * **
8283214 GTAAATTAACAATGTACACGATAAACGTTTCTA-CTGATATAATGAAAATAGGCGTAAATGTACA
65 GTAAATTAACAATGTACACGATAAAAG--TCTATC-GATATAATGAAAATAGGCATAAACAT-CA
8283278 AGT
126 AGT
* *
8283281 ATCGAT-AC-TGTCATATAAGTATCGATTA-TTATAATTTCGAAACATATTACTTTAAAGTATTA
1 ATCGATAACATGT-ATATAAGTATCGA-TACTTATAATTTCGAAACCTATTACTTTAAAGTAATA
*
8283343 GGTAAATTAACATTGTACACG
64 GGTAAATTAACAATGTACACG
8283364 GTAATATATT
Statistics
Matches: 179, Mismatches: 28, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
128 78 0.44
129 6 0.03
130 82 0.46
131 13 0.07
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (128 bp):
ATCGATAACATGTATATAAGTATCGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATAGG
TAAATTAACAATGTACACGATAAAAGTCTATCGATATAATGAAAATAGGCATAAACATCAAGT
Found at i:8284468 original size:29 final size:31
Alignment explanation
Indices: 8284434--8284497 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
8284424 ATGGATTTGG
* *
8284434 TTAGTGGCCAAAATATAAA-TTTTG-AAAGT
1 TTAGTGACCAAAATATAAACTTTAGAAAAGT
* *
8284463 TTAGTGACGAAATTATAAACTTTAGAAAAGT
1 TTAGTGACCAAAATATAAACTTTAGAAAAGT
8284494 TTAG
1 TTAG
8284498 AAACTAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 16 0.55
30 4 0.14
31 9 0.31
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.34
Consensus pattern (31 bp):
TTAGTGACCAAAATATAAACTTTAGAAAAGT
Found at i:8286594 original size:23 final size:22
Alignment explanation
Indices: 8286538--8286598 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
8286528 TAGCATTTTC
*
8286538 GTAAGAATACTTTGTGTACTTG
1 GTAAGAGTACTTTGTGTACTTG
8286560 G--AGTAGTACTTTGTGTACTATG
1 GTAAG-AGTACTTTGTGTACT-TG
8286582 GTAAGAGTACTTTGTGT
1 GTAAGAGTACTTTGTGT
8286599 GCGAGGATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
20 2 0.06
21 14 0.41
22 4 0.12
23 12 0.35
24 2 0.06
ACGTcount: A:0.25, C:0.08, G:0.26, T:0.41
Consensus pattern (22 bp):
GTAAGAGTACTTTGTGTACTTG
Found at i:8287974 original size:20 final size:20
Alignment explanation
Indices: 8287949--8288035 Score: 147
Period size: 20 Copynumber: 4.3 Consensus size: 20
8287939 TTTTACGAAT
*
8287949 TCGCAACGCGAATATGTAAA
1 TCGCAACGCGAATCTGTAAA
*
8287969 TCGCAATGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
8287989 TCGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
*
8288009 TCGCAACGTGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
8288029 TCGCAAC
1 TCGCAAC
8288036 ACAGAAGTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (20 bp):
TCGCAACGCGAATCTGTAAA
Found at i:8287979 original size:41 final size:42
Alignment explanation
Indices: 8287904--8288035 Score: 143
Period size: 40 Copynumber: 3.3 Consensus size: 42
8287894 CTTAGTTTCC
* * *
8287904 AAATTTGCAACGCGAATATGTAAATC-AAATTGCG-AT-TTT
1 AAATTCGCAACGCGAATATGTAAATCGCAATTGCGAATCTGT
8287943 ACGAATTCGCAACGCGAATATGTAAATCGCAA-TGCGAATCTGT
1 A--AATTCGCAACGCGAATATGTAAATCGCAATTGCGAATCTGT
* * *
8287986 AAA-TCGCAACGCGAATCTGTAAATCGCAA-CGTGAATCTGT
1 AAATTCGCAACGCGAATATGTAAATCGCAATTGCGAATCTGT
8288026 AAA-TCGCAAC
1 AAATTCGCAAC
8288036 ACAGAAGTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
39 1 0.01
40 44 0.54
41 30 0.37
42 4 0.05
43 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (42 bp):
AAATTCGCAACGCGAATATGTAAATCGCAATTGCGAATCTGT
Found at i:8288067 original size:20 final size:20
Alignment explanation
Indices: 8288044--8288190 Score: 145
Period size: 20 Copynumber: 7.3 Consensus size: 20
8288034 ACACAGAAGT
*
8288044 CAAATTTGCAATGCGATTTC
1 CAAATTCGCAATGCGATTTC
8288064 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAATGCGATTTC
* * * *
8288084 CAAATTCGCAACGTGAATCTG
1 CAAATTCGCAATGCG-ATTTC
* ** **
8288105 TAAA-TCGCAACACAGAAGT-
1 CAAATTCGCAATGC-GATTTC
8288124 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAATGCGATTTC
8288144 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAATGCGATTTC
* * *
8288164 CAAATTCGCAACGTGATTTA
1 CAAATTCGCAATGCGATTTC
8288184 CAAATTC
1 CAAATTC
8288191 ACAACACTAA
Statistics
Matches: 105, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
19 6 0.06
20 92 0.88
21 7 0.07
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (20 bp):
CAAATTCGCAATGCGATTTC
Found at i:8288073 original size:80 final size:81
Alignment explanation
Indices: 8287989--8288179 Score: 307
Period size: 80 Copynumber: 2.4 Consensus size: 81
8287979 AATCTGTAAA
* ** *
8287989 TCGCAACGCGAATCTGTAAA-TCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTTGC
1 TCGCAATGCGAATCTCCAAATTCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTCGC
8288053 AATGCGATTTCCAAAT
66 AATGCGATTTCCAAAT
*
8288069 TCGCAATGCG-ATTTCCAAATTCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTCGC
1 TCGCAATGCGAATCTCCAAATTCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTCGC
8288133 AATGCGATTTCCAAAT
66 AATGCGATTTCCAAAT
*
8288149 TCGCAATGCG-ATTTCCAAATTCGCAACGTGA
1 TCGCAATGCGAATCTCCAAATTCGCAACGTGA
8288180 TTTACAAATT
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
79 6 0.06
80 99 0.94
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (81 bp):
TCGCAATGCGAATCTCCAAATTCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTCGC
AATGCGATTTCCAAAT
Found at i:8288195 original size:20 final size:20
Alignment explanation
Indices: 8288044--8288223 Score: 141
Period size: 20 Copynumber: 8.9 Consensus size: 20
8288034 ACACAGAAGT
* *
8288044 CAAATTTGCAATGCGATTTC
1 CAAATTCGCAACGCGATTTC
*
8288064 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAACGCGATTTC
* * *
8288084 CAAATTCGCAACGTGAATCTG
1 CAAATTCGCAACGCG-ATTTC
* * **
8288105 TAAA-TCGCAACACAGAAGT-
1 CAAATTCGCAACGC-GATTTC
*
8288124 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAACGCGATTTC
*
8288144 CAAATTCGCAATGCGATTTC
1 CAAATTCGCAACGCGATTTC
* *
8288164 CAAATTCGCAACGTGATTTA
1 CAAATTCGCAACGCGATTTC
* * *
8288184 CAAATTCACAACACTAAATTT-
1 CAAATTCGCAACGC--GATTTC
*
8288205 CAAATTCGCAACTCGATTT
1 CAAATTCGCAACGCGATTT
8288224 TTGAATTCGC
Statistics
Matches: 129, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
19 10 0.08
20 96 0.74
21 19 0.15
22 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.28
Consensus pattern (20 bp):
CAAATTCGCAACGCGATTTC
Found at i:8288196 original size:80 final size:80
Alignment explanation
Indices: 8288009--8288223 Score: 292
Period size: 80 Copynumber: 2.7 Consensus size: 80
8287999 AATCTGTAAA
** * *
8288009 TCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTTGCAATGCGATTTCCAAATTCGCA
1 TCGCAACGTGAATCTACAAATCACAACACAGAAGTCAAATTCGCAATGCGATTTCCAAATTCGCA
8288074 ATGCGATTTCCAAAT
66 ATGCGATTTCCAAAT
** *
8288089 TCGCAACGTGAATCTGTAAATCGCAACACAGAAGTCAAATTCGCAATGCGATTTCCAAATTCGCA
1 TCGCAACGTGAATCTACAAATCACAACACAGAAGTCAAATTCGCAATGCGATTTCCAAATTCGCA
8288154 ATGCGATTTCCAAAT
66 ATGCGATTTCCAAAT
* *
8288169 TCGCAACGTG-ATTTACAAATTCACAACACTA-AATTTCAAATTCGCAACT-CGATTT
1 TCGCAACGTGAATCTACAAA-TCACAACAC-AGAA-GTCAAATTCGCAA-TGCGATTT
8288224 TTGAATTCGC
Statistics
Matches: 125, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
79 6 0.05
80 99 0.79
81 19 0.15
82 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.27
Consensus pattern (80 bp):
TCGCAACGTGAATCTACAAATCACAACACAGAAGTCAAATTCGCAATGCGATTTCCAAATTCGCA
ATGCGATTTCCAAAT
Found at i:8288232 original size:20 final size:20
Alignment explanation
Indices: 8288207--8288256 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8288197 CTAAATTTCA
*
8288207 AATTCGCAACT-CGATTTTT
1 AATTCGCAACTACGAATTTT
8288226 GAATTCGCAA-TACGAATTTT
1 -AATTCGCAACTACGAATTTT
8288246 AATTTCGCAAC
1 AA-TTCGCAAC
8288257 AGGTTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
AATTCGCAACTACGAATTTT
Found at i:8290020 original size:19 final size:20
Alignment explanation
Indices: 8289998--8290035 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8289988 AATATTTTGT
8289998 TTCGAATT-CGAAAATAAAA
1 TTCGAATTGCGAAAATAAAA
**
8290017 TTCGCGTTGCGAAAATAAA
1 TTCGAATTGCGAAAATAAA
8290036 TACGCTTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (20 bp):
TTCGAATTGCGAAAATAAAA
Found at i:8290048 original size:19 final size:20
Alignment explanation
Indices: 8290006--8290048 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
8289996 GTTTCGAATT
* *
8290006 CGAAAATAAAATTCGCGTTG
1 CGAAAATAAAATACGCGTTA
*
8290026 CGAAAAT-AAATACGCTTTA
1 CGAAAATAAAATACGCGTTA
8290045 CGAA
1 CGAA
8290049 TTTGACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.23
Consensus pattern (20 bp):
CGAAAATAAAATACGCGTTA
Found at i:8291071 original size:21 final size:22
Alignment explanation
Indices: 8291046--8291097 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
8291036 ACACTTTACA
*
8291046 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
8291069 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
8291092 ATATAA
1 ATATAA
8291098 GCGCTATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:8291106 original size:19 final size:20
Alignment explanation
Indices: 8291059--8291114 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 20
8291049 TAACCACTAC
8291059 CTATTACATTATATAAACGATA
1 CTATTACATTATATAAACG--A
*
8291081 CCTATTACATTATATAAGCG-
1 -CTATTACATTATATAAACGA
*
8291101 CTATTACATCATAT
1 CTATTACATTATAT
8291115 TTTACCTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 13 0.42
23 18 0.58
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (20 bp):
CTATTACATTATATAAACGA
Found at i:8291506 original size:23 final size:23
Alignment explanation
Indices: 8291480--8291542 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
8291470 ATATAACCAC
8291480 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* *
8291503 TACCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
8291526 TACCTATTACATCATAT
1 TACCTATTACATTATAT
8291543 TTTTACCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:8292010 original size:39 final size:39
Alignment explanation
Indices: 8291956--8292041 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
8291946 CAAGTTGGAG
*
8291956 ATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTGA
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
* *
8291995 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTGG
1 ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
8292034 ATTTTGAT
1 ATTTTGAT
8292042 GAGCATCGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.49
Consensus pattern (39 bp):
ATTTTGATTTCCTTTTGCTTGGCACCATATGAGATTTGA
Found at i:8292353 original size:24 final size:25
Alignment explanation
Indices: 8292300--8292353 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
8292290 AAATATATAT
8292300 TGAAATTCAAACTCAAATTAAAATA
1 TGAAATTCAAACTCAAATTAAAATA
* *
8292325 T-AAATTCAAACTCCAATT-ACATA
1 TGAAATTCAAACTCAAATTAAAATA
8292348 TGAAAT
1 TGAAAT
8292354 GAATTTGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 5 0.19
24 20 0.77
25 1 0.04
ACGTcount: A:0.52, C:0.15, G:0.04, T:0.30
Consensus pattern (25 bp):
TGAAATTCAAACTCAAATTAAAATA
Found at i:8292786 original size:21 final size:22
Alignment explanation
Indices: 8292760--8292811 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 22
8292750 TTTACAATAT
*
8292760 ATTATATAA-GCTACCTATTAC
1 ATTATATAACGATACCTATTAC
8292781 ATTATATAAACGATACCTATTAC
1 ATTATAT-AACGATACCTATTAC
8292804 ATTATATA
1 ATTATATA
8292812 CCCACCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 7 0.25
22 3 0.11
23 18 0.64
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.38
Consensus pattern (22 bp):
ATTATATAACGATACCTATTAC
Found at i:8295422 original size:178 final size:180
Alignment explanation
Indices: 8294950--8295437 Score: 869
Period size: 181 Copynumber: 2.7 Consensus size: 180
8294940 CGACACATTT
* * * * *
8294950 TAGGTTGTAGACATATTCACGCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
8295015 ATTACATTATAATTATGGGTTCCGA-GTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
8295079 TTTTCTTCCAATATGGACATAAAGTACCGACACAATATTAAAAGTGTCGATA
131 TTTTCTTCCAATATGGA-ATAAAGTACCGA-ACAATATTAAAAGTGTCGATA
8295131 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
8295196 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACAC-TTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
8295260 TTTTCTTCCAATATGG-ATAAAGTACCG-ACAATATTAAAAAGTGTCGATA
131 TTTTCTTCCAATATGGAATAAAGTACCGAACAATATT-AAAAGTGTCGATA
8295309 TAGGTTGTAGACCTATTCGCTCATACAACCGGTAT-TTTATACCTGTTATATTACAAAATTATCT
1 TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
8295373 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
66 ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
8295438 GGAGACTTTA
Statistics
Matches: 299, Mismatches: 5, Indels: 9
0.96 0.02 0.03
Matches are distributed among these distances:
177 79 0.26
178 70 0.23
179 11 0.04
181 123 0.41
182 16 0.05
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (180 bp):
TAGGTTGTAGACCTATTCGCTCATACAACCGGTATATTTATACCTGTTATATTACAAAATTATCT
ATTACATTATAATTATGGGTTCCGATGTGTAAATGTCGACACTTTTTTAAATCGTATCGACACAT
TTTTCTTCCAATATGGAATAAAGTACCGAACAATATTAAAAGTGTCGATA
Found at i:8297560 original size:195 final size:197
Alignment explanation
Indices: 8296804--8297860 Score: 1838
Period size: 195 Copynumber: 5.5 Consensus size: 197
8296794 TTTAAATTAG
8296804 TATCGACACAAACTATATTAGTGTCG--ACATTATTTAGACATATTCTCACATAAAA-CGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
8296866 ATTGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
* *
8296930 CGACACTTTTTATAT-CGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATAT-T-TAAAT
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT-TCTGGAAAT
* *
8296992 TAG
195 AAA
*
8296995 TATCGAAACAAACTATATTAGTGTCGACAC-TTATTTAGACATATTCTCACAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
*
8297058 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTA-ACTTTTGGGTTCGATGATGTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
8297122 CGACAC-TTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATAT-T-TAAAT
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT-TCTGGAAAT
8297184 ---
195 AAA
8297184 TATCGACAC-AACTATATTAGTGTCG--ACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
*
8297246 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAATTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
8297311 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
8297376 AA
196 AA
8297378 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
8297443 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
8297507 CGACACTTTTTATATAT-GATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
8297571 AA
196 AA
8297573 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
*
8297638 ATTGTAACGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
66 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
*
8297703 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAAAA
131 CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
8297768 AA
196 AA
8297770 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATA-TCTCACAT-AAACCGGTATA
1 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
8297833 ATTGTACCGGTTAGATTG-AAAATTACAT
66 ATTGTACCGGTTAGATTGAAAAATTACAT
8297861 CCTTTTGGCC
Statistics
Matches: 836, Mismatches: 11, Indels: 35
0.95 0.01 0.04
Matches are distributed among these distances:
186 2 0.00
187 22 0.03
188 65 0.08
189 39 0.05
190 49 0.06
191 40 0.05
192 124 0.15
193 21 0.03
194 19 0.02
195 198 0.24
196 88 0.11
197 169 0.20
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (197 bp):
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGAT
CGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATA
AA
Found at i:8297764 original size:392 final size:385
Alignment explanation
Indices: 8296804--8297860 Score: 1841
Period size: 392 Copynumber: 2.7 Consensus size: 385
8296794 TTTAAATTAG
8296804 TATCGACACAAACTATATTAGTGTCGACATTATTTAGACATATTCTCACATAAAA-CGGTATAAT
1 TATCGACACAAACTATATTAGTGTCGACATTATTTAGACATATTCTCACATAAAACCGGTATAAT
8296868 TGTACCGGTTAGATTG-AAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATCG
66 TGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATCG
* * *
8296932 ACACTTTTTATAT-CGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATAT-T-TAAATTA
131 ACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT-TCTGGAAATAA
* *
8296994 GTATCGAAACAAACTATATTAGTGTCGACAC-TTATTTAGACATATTCTCACATAAACCGGTATA
195 ATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAACCGGTATA
8297058 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTAACTTTTGGGTTCGATGATGTTGGGATC
260 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTAACTTTTGGGTTCGATGATGTTGGGATC
*
8297123 GACACTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATATTTAAAT
325 GACACTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATATTGAAAT
8297184 TATCGACAC-AACTATATTAGTGTCGACATTATTTAGACATATTCTCACATAAAACCGGTATAAT
1 TATCGACACAAACTATATTAGTGTCGACATTATTTAGACATATTCTCACATAAAACCGGTATAAT
*
8297248 TGTACCGGTTAGATTGAAAAATTACATATTACATTATAATTTTGGGTTCGATGATTTTGGGATCG
66 TGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATCG
8297313 ACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATAAA
131 ACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATAAA
8297378 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGTATA
196 TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACAT-AAACCGGTATA
*
8297443 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGGAT
260 ATTGTACCGGTTAGATTGAAAAATTACATATTACATTA-ACTTTTGGGTTCGATGATGTTGGGAT
8297507 CGACACTTTTTATATAT-GATCGACACTTTATGGTGCACCCTGTTTTCCATTCAT-TCTGGAAAT
324 CGACAC-TTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATAT-T-GAAAT
8297570 AAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAAACCGGT
1 ---TATCGACACAAACTATATTAGTGTCG--ACATTATTTAGACATATTCTCACATAAAACCGGT
*
8297635 ATAATTGTAACGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
61 ATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
8297700 GATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAA
126 GATCGACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAA
*
8297765 AAAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATA-TCTCACATAAACCGG
191 ATAAATATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAACCGG
8297829 TATAATTGTACCGGTTAGATTG-AAAATTACAT
256 TATAATTGTACCGGTTAGATTGAAAAATTACAT
8297861 CCTTTTGGCC
Statistics
Matches: 649, Mismatches: 11, Indels: 25
0.95 0.02 0.04
Matches are distributed among these distances:
379 45 0.07
380 34 0.05
381 61 0.09
382 39 0.06
383 34 0.05
384 23 0.04
385 115 0.18
386 16 0.02
389 19 0.03
390 45 0.07
391 8 0.01
392 210 0.32
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (385 bp):
TATCGACACAAACTATATTAGTGTCGACATTATTTAGACATATTCTCACATAAAACCGGTATAAT
TGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGGATCG
ACACTTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATTCTGGAAATAAA
TATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCACATAAACCGGTATAA
TTGTACCGGTTAGATTGAAAAATTACATATTACATTAACTTTTGGGTTCGATGATGTTGGGATCG
ACACTTTTATATATGGATCGACACTTTATGGTGCACCCTGTTTTCCATTCATATTGAAAT
Found at i:8298016 original size:19 final size:19
Alignment explanation
Indices: 8297985--8298033 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
8297975 TTATATTCAC
8297985 ATACGAAAA-TATAAATCGT
1 ATAC-AAAATTATAAATCGT
*
8298004 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
8298023 ATACAAAATTA
1 ATACAAAATTA
8298034 ACCCTACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:8299871 original size:33 final size:32
Alignment explanation
Indices: 8299817--8299881 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
8299807 CATCTTAATA
*
8299817 TCACCCCTTACACCCCAACTTCTTTCACCACT
1 TCACCCCTAACACCCCAACTTCTTTCACCACT
* *
8299849 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCT-AACACCCCAACTTCTTTCACCACT
8299882 CCATCTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.22, C:0.49, G:0.00, T:0.29
Consensus pattern (32 bp):
TCACCCCTAACACCCCAACTTCTTTCACCACT
Found at i:8299955 original size:21 final size:21
Alignment explanation
Indices: 8299915--8299978 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
8299905 CCCCTTATGC
* *
8299915 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
8299936 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
*
8299957 -TGATC-AGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
8299977 CT
1 CT
8299979 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 15 0.42
21 21 0.58
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.41
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:8302219 original size:17 final size:18
Alignment explanation
Indices: 8302197--8302239 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
8302187 ATATATCCGG
8302197 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
8302214 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
8302234 TATCAT
1 TATCAT
8302240 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:8302257 original size:20 final size:19
Alignment explanation
Indices: 8302202--8302248 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
8302192 TCCGGTATCA
8302202 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
8302221 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
8302242 TTTTACC
1 TTTTACC
8302249 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Done.