Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009644.1 Hibiscus syriacus cultivar Beakdansim tig00117060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 611714
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:828 original size:104 final size:103
Alignment explanation
Indices: 335--1620 Score: 1403
Period size: 103 Copynumber: 12.5 Consensus size: 103
325 GGTTCTGACA
* *
335 GAGATGAATTATTT-TTTCGAGTTAAACAATTTGTAAAATTTGTGTTTCAAGGGAAAACTGTCTC
1 GAGATGAATT-TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTC
* * * *
399 AAGCAAGACGAAATTGGTTTTAAGAAAAATAATTTCAACT
64 AAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * * * *
439 GAGATGAAATTTTCTTTCGAGTGAAACAA-TTCTAAAATTTATGTTTAAAGGGAAAACTCTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* * *
503 AGCGAGATGAAATTGGTTTTAAGAAAAAGAATCTTAAGT
65 AGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * * *
542 GACA--AATTTTT-TTTCTGAGTTAAGCAATTTC--AAATTTCTGTTTCAAGGGAAACTGTCTCA
1 GAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* * * ** * * * *
602 AGCGATATGGAATTAATTTTAAG-AACATAATATCAATT
65 AGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * *
640 GGGAT-AATTTTTTGTTTC-ATATGAAACAATTTCTAATAATTT-TGTTTCAAGGGAAATTGTCT
1 GAGATGAA-TTTTTGTTTCGA-GTGAAACAATTTCTAA-AATTTGTGTTTCAAGGGAAACTGTCT
* * * *
702 CAAACAAGACAAAATTCGTTTTAAGAAAAACAATCTCAAGT
63 CAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
** * * *
743 GATTTGAATTTTTGTTTCGAGTGAAACGATTTCTAAAATTTTTGTTTCAAGAGAAACCTGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTGTCTCA
* * * *
808 GGCAAGACGAATTTGGTTTTAAGAAAAACAATCTCATGT
65 AGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
*
847 GAGATGAATTTTTATTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* **
912 CCGAGACGAAATTGGTTTTAAGAAAAATTATCTCAAGT
66 GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* *
950 GAAATGAATTTTTGTTTCGAGTTAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * *
1015 GCGAGACGAAGTTGGTTTTAAGAAAAATAATCTCAAGC
66 GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * * * * *
1053 AAGATGAATTTTTGTTTTGAGTAAAACAATTTCTAAAATTTGGGTTTCAAGGGAAAACTATGTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* *
1118 AGCGAGA-GAAAATTGATTTTAAGAATAACAATCTCAAGT
65 AGCGAGACG-AAATTGGTTTTAAGAAAAACAATCTCAAGT
** * * * *
1157 GATTTGAA-TTTT-TTTCGAGTGAAACAATTTCTAAAATTTATATTTTTCAAGGGAAAATATTCT
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAA-TT-TGTGTTTCAAGGGAAACT-GTCT
* ** * *
1220 CAGGCGAGATAAAATTGGTTTTAAGGAAAA-AATC-CAAAAT
63 CAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTC-AAGT
* * * *
1260 GAGATGAATTTTCGTTTAGAGTGAAACAATTTCTAGAATTTGTATTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * *
1325 GCGAGATGAAATTTGTTTTAAG-AAAACTATCTCAAGT
66 GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * *
1362 GAAATAAATTTTTGTTTCTAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * *
1427 G-AAGGAAGAAATTGGTTTTAAGAAAAACAAACTCAAGT
66 GCGA-GACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * * **
1465 --GATGAA--TTTGCTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGGAAAAGTGTAACA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* *
1526 AGCGAGAGGAAATTGGTTTTAAGAAAAACAAAT-TTAAGT
65 AGCGAGACGAAATTGGTTTTAAGAAAAAC-AATCTCAAGT
* * * *
1565 GAGATGAACTTTTGTTTCTAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA
1621 TTGTGTAATA
Statistics
Matches: 996, Mismatches: 151, Indels: 71
0.82 0.12 0.06
Matches are distributed among these distances:
98 12 0.01
99 72 0.07
100 73 0.07
101 31 0.03
102 180 0.18
103 365 0.37
104 241 0.24
105 22 0.02
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (103 bp):
GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGT
Found at i:895 original size:207 final size:206
Alignment explanation
Indices: 335--6448 Score: 4495
Period size: 207 Copynumber: 30.1 Consensus size: 206
325 GGTTCTGACA
* *
335 GAGATGAATTATTT-TTTCGAGTTAAACAATTTGTAAAATTTGTGTTTCAAGGGAAAACTGTCTC
1 GAGATGAATT-TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTC
* * * * *
399 AAGCAAGACGAAATTGGTTTTAAGAAAAATAATTTCAACTGAGATGAAATTTTCTTTCGAGTGAA
64 AAGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAA
* * * *
464 ACAA-TTCTAAAATTTATGTTTAAAGGGAAAACTCTCTCAAGCGAGATGAAATTGGTTTTAAGAA
129 ACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAA
* *
528 AAAGAATCTTAAGT
193 AAACAATCTCAAGT
* * * *
542 GACA--AATTTTT-TTTCTGAGTTAAGCAATTTC--AAATTTCTGTTTCAAGGGAAACTGTCTCA
1 GAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* * * * ** * * * * * *
602 AGCGATATGGAATTAATTTTAAG-AACATAATATCAATTGGGAT-AATTTTTTGTTTC-ATATGA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GTGA
* * * * *
664 AACAATTTCTAATAATTT-TGTTTCAAGGGAAATTGTCTCAAACAAGACAAAATTCGTTTTAAGA
128 AACAATTTCTAA-AATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGA
728 AAAACAATCTCAAGT
192 AAAACAATCTCAAGT
** * * *
743 GATTTGAATTTTTGTTTCGAGTGAAACGATTTCTAAAATTTTTGTTTCAAGAGAAACCTGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTGTCTCA
* * * *
808 GGCAAGACGAATTTGGTTTTAAGAAAAACAATCTCATGTGAGATGAATTTTTATTTCGAGTGAAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
*
873 CAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAACCGAGACGAAATTGGTTTTAAGAAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
**
938 ATTATCTCAAGT
195 ACAATCTCAAGT
* *
950 GAAATGAATTTTTGTTTCGAGTTAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * ** * *
1015 GCGAGACGAAGTTGGTTTTAAGAAAAATAATCTCAAGCAAGATGAATTTTTGTTTTGAGTAAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * * * *
1080 AATTTCTAAAATTTGGGTTTCAAGGGAAAACTATGTCAAGCGAGA-GAAAATTGATTTTAAGAAT
131 AATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACG-AAATTGGTTTTAAGAAA
1144 AACAATCTCAAGT
194 AACAATCTCAAGT
** * * * *
1157 GATTTGAA-TTTT-TTTCGAGTGAAACAATTTCTAAAATTTATATTTTTCAAGGGAAAATATTCT
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAA-TT-TGTGTTTCAAGGGAAACT-GTCT
* * ** * * * *
1220 CAGGCGAGATAAAATTGGTTTTAAGGAAAA-AATC-CAAAATGAGATGAATTTTCGTTTAGAGTG
63 CAAGCAAGACGAAATTGGTTTTAAGAAAAACAATCTC-AAGTGAGATGAATTTTTGTTTCGAGTG
* * * *
1283 AAACAATTTCTAGAATTTGTATTTCAAGGGAAACTGTCTCAAGCGAGATGAAATTTGTTTTAAG-
127 AAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGA
*
1347 AAAACTATCTCAAGT
192 AAAACAATCTCAAGT
* * *
1362 GAAATAAATTTTTGTTTCTAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * *
1427 G-AAGGAAGAAATTGGTTTTAAGAAAAACAAACTCAAGT--GATGAA--TTTGCTTCGAGTGAGA
66 GCAA-GACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* ** *
1487 CAATTTCTAAAATTTGTGTTTCAAGGGAAAAGTGTAACAAGCGAGAGGAAATTGGTTTTAAGAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
*
1552 AACAAAT-TTAAGT
194 AAC-AATCTCAAGT
* * * * *
1565 GAGATGAACTTTTGTTTCTAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAA-T-TGT---
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* *
1625 GTAATACG--A---G----ACA-AAAAA-AATCTCAAGTGAGATGAATTTTT-TTT-GAGTGAAA
66 GCAAGACGAAATTGGTTTTA-AGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* * * * * * *
1677 CAATTTCTAAAATTTGTGTTTCGAGGGAAATTATCTTAATCGAGACCAAATTGGTTTTAAGAAGA
130 CAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
*
1742 ATAATCTCAAGT
195 ACAATCTCAAGT
* * * *
1754 GAGATGAGTTTTTTTTTCGAGTGAAACAATTTGTAAAATTTGTTTTTCAAGGGAAAACTGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* * ** * * *
1819 ATCGAGAAAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAGA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* * *
1884 CAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTCAAGAGAGATGAAATTTGTTTTAAGAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
*
1949 AAGAATCTCAAGT
194 AACAATCTCAAGT
* * * *
1962 --GAT-AA-TTTT-TTCCTAAGTGAAACAATTT-TAAAATTTTTGTTTCAAGGGAAACTATCTCA
1 GAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* * * * *
2021 AG-AGAGACGAAATTGATTTTAAGAAAAATAATATCAAGTGAGAT-AATTTTTTGTTTC-ATATC
65 AGCA-AGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GTG
** * * * * *
2083 AAACAAAATCTAAAATTTTTGTTTCAAGGGAAATTGTGTCAAGTGAGATGAAATTGGTTTTAAGA
127 AAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGA
* *
2148 GAAACAATATCAAGT
192 AAAACAATCTCAAGT
** * ** * * * * *
2163 GATTTAAATTTTTGTTTCGAGTGAAACAATTTCTAATTTTTTTGTTTCAAGAAGAAATTGTTTGA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAACTGTCTCA
* * * * * * *
2228 GGCAAGATGAATTTAGTTTTAAGAAAAATATATCTCAGGTGAGATGAAATTTTGTTTC-ATGTGA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACA-ATCTCAAGTGAGATGAATTTTTGTTTCGA-GTGA
* * *
2292 AACAATTTCTAAAATTTGTTTTTCAAGGAAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAA
128 AACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAA
*
2357 AAACAATCTC-TG-
193 AAACAATCTCAAGT
* * * * * * * * *
2369 GAAATAAATGTTTGTTTCGAGTGAAGCAATTTATAAAATTTTTGTTTTAAAGGAAACTATCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* *
2434 GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * **
2499 AATTTCTAAAATTTGTGGTTT-ATGGGAAAACTGTGTCAATTGAGA-GAAAATTGGTTTTAAGAA
131 AATTTCTAAAATTTGT-GTTTCAAGGG-AAACTGTCTCAAGCGAGACG-AAATTGGTTTTAAGAA
*
2562 AAACAATTTCAAGT
193 AAACAATCTCAAGT
* * * * *
2576 GAGATGAATTTTTGTTTCTAGTG-----------AAAATTTGAGTTTAAAGGGAAATTGTCTCAT
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
** * * **
2630 GGGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAAATTTGTTTCGAGTGAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * * * * * *
2695 AATTTCTAAAATTTATGTTTAAAGGGAAACTGTTTTAAGTGAGATGAAATTGGTTTTGAGAAAAA
131 AATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAA
*
2760 CAATCTAAAGT
196 CAATCTCAAGT
* * *
2771 GAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTTCAAGGGAAAAATGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* * * * * * * * * * *
2836 AGCGAGATGAAAATGGTTCTAAGAAAAACATTATCAAGTGAGATGATTTTTTTTTTCAATTG-AT
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
*** * * * * * * * *
2900 TTTTTTCAACAAATTTTTGTTTTAAAGGG-CATTGTCTCAAACGAGA-AAAATTGGTTGTAA-AA
130 CAATTTCTA-AAATTTGTG-TTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAA
* *
2962 AATATATTCTCATA-T
193 AA-ACAATCTCA-AGT
* * * * * * ** *
2977 GAGATAAATTTTTGTTTCAAGTGAAACAAATTGTGAAATTTGAGTTTCAAGTTAAAATTGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAACTGTCTCA
** * * * * **
3042 AGTGAGACGAAATTGGTTATAAGAAAAACATTCTCAAGTGGGATGAAGTTTAATTTCGAGTGAAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* ** * * * * *
3107 CAATTTCTAACATTCATGTTTCAAGGGAAAGATGTCTCAAGCGAGACAAAATTAGTTATAAGGAA
130 CAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
* *
3172 AAGAATCTTAAGT
194 AACAATCTCAAGT
* * * * *
3185 AAGA-CAA--TTT-TTT-GAGTAAAACAATTT-TAAAATTTATGTTTCAAGGGAAATTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * * *
3244 GGGAGGA-AAAATTGGTTTTAAGAAAAATAATCTCAAGCGAGAT-ATATTTTTGTTTC-ACGTGA
66 -GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA-ATTTTTGTTTCGA-GTGA
** * * * * *
3306 AACAATTTCTAAAATTTGTGTTTCAAGGGAAACCATCTCAAGCAAGGCAAAACTGGTTTTATGAA
128 AACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAA
3371 AAACAATCTCAAGT
193 AAACAATCTCAAGT
** * * *
3385 GATTTGAATTTTT-TTTCGACTGAAACAATTTCTAAAATTTGTGTTTCAAGGAAAAACAT-TATC
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGG-GAAAC-TGTCTC
* * * * ** *
3448 ACGCGAGACGAAATTCGTTTTAAG-AAAACAATCTCAAGTGTGATGAATTTTCATTTTGAGTGAA
64 AAGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAA
* * * * * *
3512 ACAATTTCTAGAATTTGTATTTCAAGAGAAACTGTTTCAAGGGAGACGAAATTGGTTTTAATAAA
129 ACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
*
3577 AAGCAATCTGAAGT
194 AA-CAATCTCAAGT
* * * * * * *
3591 GAAATAAATTTTTATTTCAAGTGAAACAATTTCTGAAATTTGTGTTTCAAGTGAAACTGTTTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * *
3656 GCAAGATGAAATTGGTTTTAAGAAAAACAAACTCAAGT--GATGAATTTTTGTTTCAAGTGAAAG
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * * ** * *
3719 AATTTGTAAAATTTGTGTTTCGAGGGAAAAGTGTAACTAGCGAGAGGAAATTGGTTTTCAA-AAA
131 AATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTT-AAGAAA
* * *
3783 AACATTTTTAAGT
194 AACAATCTCAAGT
* * * * * *
3796 GAGATGAATTTTTGTTTCCAATGAAACAATTTCTAAAATTTGTGTTTAAAGGGAAATTGTTTCAT
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * * * *
3861 G--TGAC--AA--------AA-AAATA-AATCTCAAGTGAGATTAAATTTTGTTTTGAGAGAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * * * * **
3912 AATTTTTTAAATTTGCGTTTCAAGGGAAAACTGTCTCAAGTGAGATGAAATTTTTTTTAAGAAAA
131 AATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
* *
3977 AGAATCTAAAGT
195 ACAATCTCAAGT
* * * *
3989 --G-TGAA-TTTT-TTTCTTAGTGAAACAATTTC-AAAATTTTTGTTTCAAGGAAAACTATCTCA
1 GAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* * * * *
4048 AG-AGAGACGAAATTGATTTTAAGAAAAATAATATTAAGTGAGAT-AATTTTTTGTTTC-ATATG
65 AGCA-AGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GTG
* * * * *
4110 AAACAATTTCTAGAATTTTTATTT-AAGGGGAAACTGTCTCAAGTGAGACGAAATTGGCTTTAAG
127 AAACAATTTCTAAAATTTGTGTTTCAA-GGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
4174 AAAAACAATCTCAAGT
191 AAAAACAATCTCAAGT
** * * * * ** * *
4190 GATTTGAATTTTTGTTTCGAATGAAACAATTTCTAAATTTTTTGTTTTAAGAAAAAATTGTCTGA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAACTGTCTCA
* * * * * *
4255 GGCAAGACGAATTTGGTTTTAAGAAAAACAATCTCTAGTGAGATTAAATTTTGTTTCAAGTGAAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* * * *
4320 CAATTTCTAAAATTTGTTTTTCAAGGAAAATTGTCTCAAGCAAGACGAAATTGG-TTTAA-AAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
* *
4383 ACAATCTTAGGT
195 ACAATCTCAAGT
* * * * *
4395 AAAATAAATTTTTGTTTCAAGTGAAACAGTTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* * * * ** * *
4460 GCGAGACAAAATTGGTTTTACGAAAAACAATCTCAAGTGTGATGAATAATTGTTTCGGGTAAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
** * * *
4525 AATTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGAGA-GAAAATTAGTTTAAAGAAA
131 AATTTCTAAAATTTGTGTTTCAAGGGAAA-CTGTCTCAAGCGAGACG-AAATTGGTTTTAAGAAA
*
4589 AACAATCTCAAGC
194 AACAATCTCAAGT
* * * * ** * * **
4602 GAG-GGAA--ATTGTCTC-A-TG---CGA-GAC-GAAA-TTGAT-TTT-AA-GAAAATCAATCTC
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTG-TGTTTCAAGGGAAA-CTGTCTC
** * * * ** * * * *
4653 AAGTGAGATGAAATT-TTCTTTCGAGTGAAACAATTTC---T-A-A--AATTTGTGTTTCAAGAG
64 AAGCAAGACGAAATTGGT-TTT-AAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTG
*** * * **** *** * * *
4710 AAATTGTCTCAAGCGAAACGAAAATAG-TTCTAATAAAAACAT-TCTAAAGTGAGATGAATATT-
127 AAACAATTTCTA---AAA--TTTGT-GTTTC-AAGGGAAAC-TGTCTCAAGCGAGACGAA-ATTG
** * * *
4772 -TTTTCAAGTGAAATATTTTC----
183 GTTTT-AAGAAAAACAATCTCAAGT
* * * *** * * * *** *
4792 GA-A--AATTTTTGTGTCAAGAGAAATTGTCTCAAGTGAGACGAAATTG-G-TTGAAAAAAAATA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTC---T-A-A--AATTTGTGTTTCAAGGGAAA-C
* ** * ** * * * * *
4852 TATTCTCAAGTGAGATGATTTTTGTTTCGAAAAAAAATGAAAATATATTCTCAAGTGAGATGATT
58 T-GTCTCAAGCAAGACGAAATTGGTTT-------TAA-GAAAA-ACAATCTCAAGTGAGATGAAT
* * * * * * * *
4917 TTTTGTTTCAATGCGAAAAAATATCGAAAAATTT-TGTTTTAAGGGAAACTGTCTTAAGTGAGAC
113 TTTTGTTTCGA-GTGAAACAATTTC-TAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGAC
* * * ** *
4981 AAAATTGGTTTTGACAAAATTAATCTCAAAT
176 GAAATTGGTTTTAAGAAAAACAATCTCAAGT
* * * * * * * * *
5012 GCGATTAATTTTTGTTTGGAGTCAAACAAATTGTGAAATTTATTTTTCAAGGGAAAACTGTCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCA
* ** * * * *
5077 AGCGAGAAAAAATTGGTTTTTAAAAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAG
65 AGCAAGACGAAATTGG-TTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAA
* *
5142 ACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTCAAGCGAGATGAAATTTGTTTTAA-AA
129 ACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAA
* *
5206 AAAGAATCTCCAGT
193 AAACAATCTCAAGT
* * ** *
5220 --GAT-AATTTTT-TTCTTGAGTGAAACAATTT-TAAAATTTTTGTTTCAAGATAAACTATCTCA
1 GAGATGAATTTTTGTT-TCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
* * * * *
5280 AG-AGAGACGAAATTGATTTTAAGAAAAAATAATATCAAATGAGAT-AATTTTTTGTTTC-ATAT
65 AGCA-AGACGAAATTGGTTTTAAG-AAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GT
* ** * * * * * * * * *
5342 CAAACAAAATCTAAAATTTTTATTTCAAGGGAAATTGTTTGAGGCAAAACGAAATTAGTTTTAAG
126 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
*
5407 AGAAACAATCTCAAGT
191 AAAAACAATCTCAAGT
** * * * * * * *
5423 GATTTGAATTTTTGTTTCAAGTGAAACAATTTCTAAATTTTTTGTTTCAAGAAGAAATTGTTTGA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAACTGTCTCA
* * * ** * * *
5488 GGCAAGATGAATTTGGTTTTAAGAAAAAGTATTTCAAGTGATATGAAATTTTGTTTC-ATGTGAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA-GTGAA
* * * * * *
5552 ACAATTTCTAAAATTTGTTTTTTAAGGGAAACTGTATTAAGTGAGATGAAATTGGTTTTAAGAAA
129 ACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
*
5617 AACAATCTC-AGA
194 AACAATCTCAAGT
* * * * *
5629 GAAATAAATTTTTGTTTCGAGTGAAGCAATTTCTAAAATTTTTGTTTGAAGGGAAACTGTCTCAA
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
* *
5694 GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAAC
66 GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
* * * *
5759 AATTTCTAAAATTTGTGTTTGAAGGGAAAACTGTGTCAAGTGAGA--AAATTGATTTTAAGAAAA
131 AATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
5822 ACAATCTCAAGT
195 ACAATCTCAAGT
* * * * *
5834 AAGATGAATTTTTGTTTCTAGTG-----------AAAATTTGGGTTTTAAGGGAAATTGTCTCAT
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA-
* ** * *
5888 AG-GAGACG-AATTGAATTTAAGAAAATCAATCTCAAGTGAGATGAAATTTT-TTTCGAGTGAAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* * * * * * *
5950 CCATTTCTAAAATTTGTGTTTAAAGCGAAATTGTTTTAAGCGAGATGAAATTGGTTTTAAGAAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAA
*
6015 ACAATCTAAAGT
195 ACAATCTCAAGT
* * *
6027 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTT-AGAGGGAAAATTATCTC
1 GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA-AGGG-AAACTGTCTC
* * * * * * *
6091 AGGCGAGATGAAAATGGTTCTAAGAAAAACATTCTCAAGTGAGATGAATTTTT-TTT-AAGTGAA
64 AAGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAA
* * * * * * * * *
6154 ATATTTTCGAAAATTTTTGTTTCAAGGGAAATTGTCTCAAGCGAGACAAAATCGGTTATAA-AAC
129 ACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
* *
6218 AATATTCTCAAGT
194 AACAATCTCAAGT
* *** * * *
6231 GAGATAAATTTTTGTTTCGAGTGAAACAATATGAAAAAATTT-TGTTTGAAGGAAAACTATCTCA
1 GAGATGAATTTTTGTTTCGAGTGAAACAAT-TTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCA
** * *
6295 AGTGAGACGAAATTGATTTT------AAC-A----AA---A-AT-AATTTTTATTTCGAGTGAAA
65 AGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAA
* * * * * * * *
6344 CAAATTGTGAAATTTGAGTTTCAAGGGAAAATTGTCTCAAGCGAGAAGAAATTGATTATAAGAAA
130 CAATTTCTAAAATTTGTGTTTCAAGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAA
* *
6409 AACATTCTTAAGT
194 AACAATCTCAAGT
* * *
6422 GAGATGAAGTTTAGTTTTGAGTGAAAC
1 GAGATGAATTTTTGTTTCGAGTGAAAC
6449 TGTCACACCC
Statistics
Matches: 4674, Mismatches: 962, Indels: 558
0.75 0.16 0.09
Matches are distributed among these distances:
187 7 0.00
188 48 0.01
189 147 0.03
190 87 0.02
191 65 0.01
192 54 0.01
193 171 0.04
194 62 0.01
195 103 0.02
196 121 0.03
197 8 0.00
198 4 0.00
199 3 0.00
200 44 0.01
201 300 0.06
202 253 0.05
203 265 0.06
204 338 0.07
205 745 0.16
206 655 0.14
207 748 0.16
208 255 0.05
209 59 0.01
210 4 0.00
211 2 0.00
212 1 0.00
213 3 0.00
214 5 0.00
215 4 0.00
216 32 0.01
217 23 0.00
218 10 0.00
219 4 0.00
220 5 0.00
221 13 0.00
222 8 0.00
223 18 0.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.34
Consensus pattern (206 bp):
GAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAA
GCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAAC
AATTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAA
CAATCTCAAGT
Found at i:1791 original size:103 final size:103
Alignment explanation
Indices: 1637--4600 Score: 2589
Period size: 104 Copynumber: 29.1 Consensus size: 103
1627 AATACGAGAC
* *
1637 AAAAAAAATCTCAAGTGAGATGAATTTTT-TTT-GAGTGAAACAATTTCTAAAATTTGTGTTTCG
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * *
1700 AGGGAAATTATCTTAATCGAGACCAAATTGGTTTTAAG
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * *
1738 AAGAATAATCTCAAGTGAGATGAGTTTTTTTTTCGAGTGAAACAATTTGTAAAATTTGTTTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* **
1803 AGGGAAAACTGTCTCAATCGAGAAAAAATTGGTTTTAAG
66 AGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * *
1842 AAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAGACAATTTCTAAAATTTGTGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * *
1907 AGGGAAAACTGTCTCAAGAGAGATGAAATTTGTTTTAAG
66 AGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * *
1946 AAAAAGAATCTCAAGT--GAT-AA-TTTT-TTCCTAAGTGAAACAATTT-TAAAATTTTTGTTTC
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTC
* * *
2005 AAGGGAAACTATCTCAAGAGAGACGAAATTGATTTTAAG
65 AAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * ** *
2044 AAAAATAATATCAAGTGAGAT-AATTTTTTGTTTC-ATATCAAACAAAATCTAAAATTTTTGTTT
1 AAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTT
* * * *
2107 CAAGGGAAATTGTGTCAAGTGAGATGAAATTGGTTTTAAG
64 CAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * ** * ** *
2147 AGAAACAATATCAAGTGATTTAAATTTTTGTTTCGAGTGAAACAATTTCTAATTTTTTTGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * * * * * *
2212 AGAAGAAATTGTTTGAGGCAAGATGAATTTAGTTTTAAG
66 AG-GGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * *
2251 AAAAATATATCTCAGGTGAGATGAAATTTTGTTTC-ATGTGAAACAATTTCTAAAATTTGTTTTT
1 AAAAACA-ATCTCAAGTGAGATGAATTTTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTT
* *
2315 CAAGGAAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAG
64 CAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * * *
2355 AAAAACAATCTC-TG-GAAATAAATGTTTGTTTCGAGTGAAGCAATTTATAAAATTTTTGTTTTA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* *
2418 AAGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAG
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
*
2456 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGGTTT-
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGT-GTTTC
* * **
2520 ATGGGAAAACTGTGTCAATTGAGA-GAAAATTGGTTTTAAG
65 AAGGG-AAACTGTCTCAAGCGAGACG-AAATTGGTTTTAAG
* * * *
2560 AAAAACAATTTCAAGTGAGATGAATTTTTGTTTCTAGTG-----------AAAATTTGAGTTTAA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
2614 AGGGAAATTGTCTCATGGGAGACGAAATTGATTTTAAG
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* ** * *
2652 AAAATCAATCTCAAGTGAGATGAAAATTTGTTTCGAGTGAAACAATTTCTAAAATTTATGTTTAA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * *
2717 AGGGAAACTGTTTTAAGTGAGATGAAATTGGTTTTGAG
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * *
2755 AAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
2820 AGGGAAAAATGTCTCAAGCGAGATGAAAATGGTTCTAAG
66 AGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * **** * *
2859 AAAAACATTATCAAGTGAGATGATTTTTTTTTTCAATTG-ATTTTTTTCAACAAATTTTTGTTTT
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTA-AAATTTGTG-TTT
* * * * * *
2923 AAAGGG-CATTGTCTCAAACGAGA-AAAATTGGTTGTAA-
64 CAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * * *
2960 AAAATATATTCTCATA-TGAGATAAATTTTTGTTTCAAGTGAAACAAATTGTGAAATTTGAGTTT
1 AAAA-ACAATCTCA-AGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTT
** * * *
3024 CAAGTTAAAATTGTCTCAAGTGAGACGAAATTGGTTATAAG
64 CAAG-GGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * ** * **
3065 AAAAACATTCTCAAGTGGGATGAAGTTTAATTTCGAGTGAAACAATTTCTAACATTCATGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
3130 AGGGAAAGATGTCTCAAGCGAGACAAAATTAGTTATAAG
66 AGGGAAA-CTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * *
3169 GAAAAGAATCTTAAGTAAGA-CAA--TTT-TTT-GAGTAAAACAATTT-TAAAATTTATGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * *
3228 AGGGAAATTGTCTCAAGGGAGGA-AAAATTGGTTTTAAG
66 AGGGAAACTGTCTCAAGCGA-GACGAAATTGGTTTTAAG
* *
3266 AAAAATAATCTCAAGCGAGAT-ATATTTTTGTTTC-ACGTGAAACAATTTCTAAAATTTGTGTTT
1 AAAAACAATCTCAAGTGAGATGA-ATTTTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTT
** * * * * *
3329 CAAGGGAAACCATCTCAAGCAAGGCAAAACTGGTTTTATG
64 CAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
** *
3369 AAAAACAATCTCAAGTGATTTGAATTTTT-TTTCGACTGAAACAATTTCTAAAATTTGTGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
3433 AGGAAAAACAT-TATCACGCGAGACGAAATTCGTTTTAAG
66 AGG-GAAAC-TGTCTCAAGCGAGACGAAATTGGTTTTAAG
* ** * * *
3472 -AAAACAATCTCAAGTGTGATGAATTTTCATTTTGAGTGAAACAATTTCTAGAATTTGTATTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
3536 AGAGAAACTGTTTCAAGGGAGACGAAATTGGTTTTAAT
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * *
3574 AAAAAGCAATCTGAAGTGAAATAAATTTTTATTTCAAGTGAAACAATTTCTGAAATTTGTGTTTC
1 AAAAA-CAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTC
* * * *
3639 AAGTGAAACTGTTTCAAGCAAGATGAAATTGGTTTTAAG
65 AAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * *
3678 AAAAACAAACTCAAGT--GATGAATTTTTGTTTCAAGTGAAAGAATTTGTAAAATTTGTGTTTCG
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* ** * *
3741 AGGGAAAAGTGTAACTAGCGAGAGGAAATTGGTTTTCAA-
66 AGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTT-AAG
* * * * * *
3780 AAAAACATTTTTAAGTGAGATGAATTTTTGTTTCCAATGAAACAATTTCTAAAATTTGTGTTTAA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * *
3845 AGGGAAATTGTTTC-A-TGTGAC--AA--------AA-
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * * *
3870 AAATA-AATCTCAAGTGAGATTAAATTTTGTTTTGAGAGAAACAATTTTTTAAATTTGCGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * **
3934 AGGGAAAACTGTCTCAAGTGAGATGAAATTTTTTTTAAG
66 AGGG-AAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * *
3973 AAAAAGAATCTAAAGT--G-TGAA-TTTT-TTTCTTAGTGAAACAATTTC-AAAATTTTTGTTTC
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTC
* * * *
4032 AAGGAAAACTATCTCAAGAGAGACGAAATTGATTTTAAG
65 AAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * *
4071 AAAAATAATATTAAGTGAGAT-AATTTTTTGTTTC-ATATGAAACAATTTCTAGAATTTTTATTT
1 AAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTT
* *
4134 -AAGGGGAAACTGTCTCAAGTGAGACGAAATTGGCTTTAAG
64 CAA-GGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
** * * * *
4174 AAAAACAATCTCAAGTGATTTGAATTTTTGTTTCGAATGAAACAATTTCTAAATTTTTTGTTTTA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
** * * * * *
4239 AGAAAAAATTGTCTGAGGCAAGACGAATTTGGTTTTAAG
66 AG-GGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * *
4278 AAAAACAATCTCTAGTGAGATTAAATTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTTTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * *
4343 AGGAAAATTGTCTCAAGCAAGACGAAATTGG-TTTAA-
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* * * * * * *
4379 AAAAACAATCTTAGGTAAAATAAATTTTTGTTTCAAGTGAAACAGTTTCTAAAATTTGTGTTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* *
4444 AGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTACG
66 AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
* ** * * **
4482 AAAAACAATCTCAAGTGTGATGAATAATTGTTTCGGGTAAAACAATTTCTAAAATTTGCATTTCA
1 AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * *
4547 AGGGAAATCTGTGTCAAGCGAGA-GAAAATTAGTTTAAAG
66 AGGGAAA-CTGTCTCAAGCGAGACG-AAATTGGTTTTAAG
4586 AAAAACAATCTCAAG
1 AAAAACAATCTCAAG
4601 CGAGGGAAAT
Statistics
Matches: 2321, Mismatches: 440, Indels: 201
0.78 0.15 0.07
Matches are distributed among these distances:
89 50 0.02
90 14 0.01
91 1 0.00
92 68 0.03
93 13 0.01
94 2 0.00
97 40 0.02
98 110 0.05
99 55 0.02
100 45 0.02
101 264 0.11
102 232 0.10
103 661 0.28
104 706 0.30
105 60 0.03
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (103 bp):
AAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA
AGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAG
Found at i:1793 original size:189 final size:188
Alignment explanation
Indices: 1449--1809 Score: 453
Period size: 189 Copynumber: 1.9 Consensus size: 188
1439 TGGTTTTAAG
*
1449 AAAAACAAACTCAAGTGATGAATTTGCTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGG
1 AAAAACAAACTCAAGTGATGAATTTGCTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG
** *
1514 AAAAGTGTAACAAGCGAGAGGAAATTGGTTTTAAGAAAAACAAATTTAAGTGAGATGAACTTTTG
66 AAAAGTGTAACAAGCGAGACCAAATTGGTTTTAAGAAAAACAAATTCAAGTGAGATGAACTTTTG
*
1579 TTTCTAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAATTGTGTAATACGAGAC
131 TTTCGAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAATTGTGTAATACGAGAC
** * *
1637 AAAAA-AAATCTCAAGTGAGATGAATTTTTTTTGAGTGAAACAATTTCTAAAATTTGTGTTTCGA
1 AAAAACAAA-CTCAAGT--GATGAATTTGCTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAA
* * * * *
1701 GGG-AAA-T-TATCTTAATCGAGACCAAATTGGTTTTAAGAAGAA-TAATCTCAAGTGAGATGAG
63 GGGAAAAGTGTAAC--AAGCGAGACCAAATTGGTTTTAAGAAAAACAAAT-TCAAGTGAGATGAA
* * * * * *
1762 TTTTTTTTTCGAGTGAAACAATTTGTAAAATTTGTTTTTCAAGGGAAA
125 CTTTTGTTTCGAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAA
1810 ACTGTCTCAA
Statistics
Matches: 147, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
187 6 0.04
188 16 0.11
189 81 0.55
190 44 0.30
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (188 bp):
AAAAACAAACTCAAGTGATGAATTTGCTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG
AAAAGTGTAACAAGCGAGACCAAATTGGTTTTAAGAAAAACAAATTCAAGTGAGATGAACTTTTG
TTTCGAGTGAAACAATTTCTAAAATTTCTGTTTAAAGGGAAATTGTGTAATACGAGAC
Found at i:2472 original size:309 final size:306
Alignment explanation
Indices: 1637--6322 Score: 2807
Period size: 309 Copynumber: 15.3 Consensus size: 306
1627 AATACGAGAC
* * * *
1637 AAAAAAAATCTCAAGTGAGATG-AATTTTTTTTGAGTGAAACAATTTCTAAAATTTGTGTTTCGA
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTTCAGTGAAACAATTTCTAAAATTTGTGTTTCAA
* * * * * * * * *
1701 GGGAAATTATCTTAATCGAGACCAAATTGGTTTTAAGAAGAATAATCTCAAGTGAGATGAGTTTT
66 GGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTT
* * * * * **
1766 TTTTTCGAGTGAAACAATTTGTAAAATTTGTTTTTCAAGGGAAAACTGTCTCAATCGAGAAAAAA
131 TGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGG-AAACTGTCTCAAGCGAGACGAAA
* *
1831 TTGGTTTTAAGAAAAACAATCTCAAGTGAGA-TGAAATTTTGTTTCGAGAGAGACAATTTCTAAA
195 TTGGTTTTAAGAAAAACAATCTCAAGTGA-ATTG-AATTTTGTTTCGAGTGAAACAATTTCTAAA
* * *
1895 ATTTGTGTTTCAAGGGAAAACTGTCTCAAGAGAGATGAAATTTGTTTTAAG
258 ATTTGTGTTTCAAGAG-AAACTGTCTCAAGCGAGACGAAA-TTGTTTTAAG
* * *
1946 AAAAAGAATCTCAAGT--GAT--AATTTT-TTCCTAAGTGAAACAATTT-TAAAATTTTTGTTTC
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTT--TCAGTGAAACAATTTCTAAAATTTGTGTTTC
* * * * * * *
2005 AAGGGAAACTATCTCAAGAGAGACGAAATTGATTTTAAGAAAAATAATATCAAGTGAGATAATTT
64 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* * ** * * * * * *
2070 TTTGTTTC-ATATCAAACAAAATCTAAAATTTTTGTTTCAAGGGAAATTGTGTCAAGTGAGATGA
129 TTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTTCAAAGGAAACTGTCTCAAGCGAGACGA
* * * *
2134 AATTGGTTTTAAGAGAAACAATATCAAGTGATTTAAATTTTTGTTTCGAGTGAAACAATTTCTAA
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAA-TTTTGTTTCGAGTGAAACAATTTCTAA
** * * * * * * * *
2199 TTTTTTTGTTTCAAGAAGAAATTGTTTGAGGCAAGATGAATTTAGTTTTAAG
257 AATTTGTGTTTCAAG-AGAAACTGTCTCAAGCGAGACGAAATT-GTTTTAAG
* * *
2251 AAAAATATATCTCAGGTGAGATGAAATTTTGTTTCATGTGAAACAATTTCTAAAATTTGTTTTTC
1 AAAAACA-ATCTCAAGTGAGATGAAATTTTGTTTCA-GTGAAACAATTTCTAAAATTTGTGTTTC
* * * *
2316 AAGGAAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTC-TG-GAAATAAATG
64 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* * * * *
2379 TTTGTTTCGAGTGAAGCAATTTATAAAATTTTTGTTTTAAAGGAAACTATCTCAAGCGAGACGAA
129 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGGAAACTGTCTCAAGCGAGACGAA
*
2444 ATTGGTTTTAAGAAAAACAATCTCAAGTGAGA-TGAATTTTTGTTTCGAGTAAAACAATTTCTAA
194 ATTGGTTTTAAGAAAAACAATCTCAAGTGA-ATTGAA-TTTTGTTTCGAGTGAAACAATTTCTAA
* * * **
2508 AATTTGTGGTTT-ATGGGAAAACTGTGTCAATTGAGA-GAAAATTGGTTTTAAG
257 AATTTGT-GTTTCAAGAG-AAACTGTCTCAAGCGAGACG-AAATT-GTTTTAAG
* * * *
2560 AAAAACAATTTCAAGTGAGATGAATTTTTGTTTCTAGTG-----------AAAATTTGAGTTTAA
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTTC-AGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * * * *
2614 AGGGAAATTGTCTCATGGGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAA-A
65 AGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAATT
* * * * *
2678 TTTGTTTCGAGTGAAACAATTTCTAAAATTTATGTTT-AAAGGGAAACTGTTTTAAGTGAGATGA
129 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAA-GGAAACTGTCTCAAGCGAGACGA
* *
2742 AATTGGTTTTGAGAAAAACAATCTAAAGTGAGA-TGAAATTTTGTTTCGAGTGAAACAATTTCTA
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGA-ATTG-AATTTTGTTTCGAGTGAAACAATTTCTA
* * * * * *
2806 AAATTTGAGTTTCAAGGGAAAAATGTCTCAAGCGAGATGAAAATGGTTCTAAG
256 AAATTTGTGTTTCAAGAG-AAACTGTCTCAAGCGAGACG-AAATTGTTTTAAG
* * ** * * **** * *
2859 AAAAACATTATCAAGTGAGATGATTTTTTTTTTCAATTG-ATTTTTTTCAACAAATTTTTGTTTT
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTTC-AGTGAAACAATTTCTA-AAATTTGTG-TTT
* * * * * * *
2923 AAAGGG-CATTGTCTCAAACGAGA-AAAATTGGTTGTAA-AAAATATATTCTCATA-TGAGATAA
63 CAAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAA-ACAATCTCA-AGTGAGATAA
* * * * * * * *
2984 ATTTTTGTTTCAAGTGAAACAAATTGTGAAATTTGAGTTTC-AAGTTAAAATTGTCTCAAGTGAG
126 ATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAG--GAAACTGTCTCAAGCGAG
* * * **
3048 ACGAAATTGGTTATAAGAAAAACATTCTCAAGTGGGA-TGAAGTTTAATTTCGAGTGAAACAATT
189 ACGAAATTGGTTTTAAGAAAAACAATCTCAAGT-GAATTGAA-TTTTGTTTCGAGTGAAACAATT
* ** * * * *
3112 TCTAACATTCATGTTTCAAGGGAAAGATGTCTCAAGCGAGACAAAATTAGTTATAAG
252 TCTAAAATTTGTGTTTCAAGAGAAA-CTGTCTCAAGCGAGACGAAATT-GTTTTAAG
* * * * * *
3169 GAAAAGAATCTTAAGT-A-A-GACAA-TTT-TTTGAGTAAAACAATTT-TAAAATTTATGTTTCA
1 AAAAACAATCTCAAGTGAGATGA-AATTTTGTTTCAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * *
3228 AGGGAAATTGTCTCAAGGGAGGA-AAAATTGGTTTTAAGAAAAATAATCTCAAGCGAGATATATT
65 AGGGAAACTGTCTCAAGCGA-GACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* ** * * *
3292 TTTGTTTC-ACGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACCATCTCAAGCAAGGCAA
129 TTTGTTTCGA-GTGAAACAATTTCTAAAATTTGTGTTTCAAAGGAAACTGTCTCAAGCGAGACGA
* * * * *
3356 AACTGGTTTTATGAAAAACAATCTCAAGTGATTTGAATTTTTTTTCGACTGAAACAATTTCTAAA
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAATTTTGTTTCGAGTGAAACAATTTCTAAA
* * *
3421 ATTTGTGTTTCAAGGAAAAACAT-TATCACGCGAGACGAAATTCGTTTTAAG
258 ATTTGTGTTTCAA-GAGAAAC-TGTCTCAAGCGAGACGAAATT-GTTTTAAG
* * * * *
3472 -AAAACAATCTCAAGTGTGATG-AATTTTCATTTTGAGTGAAACAATTTCTAGAATTTGTATTTC
1 AAAAACAATCTCAAGTGAGATGAAATTTT--GTTTCAGTGAAACAATTTCTAAAATTTGTGTTTC
* * * * * * *
3535 AAGAGAAACTGTTTCAAGGGAGACGAAATTGGTTTTAATAAAAAGCAATCTGAAGTGAAATAAAT
64 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAA-CAATCTCAAGTGAGATAAAT
* * * * * *
3600 TTTTATTTCAAGTGAAACAATTTCTGAAATTTGTGTTTC-AAGTGAAACTGTTTCAAGCAAGATG
128 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAG-GAAACTGTCTCAAGCGAGACG
* * * *
3664 AAATTGGTTTTAAGAAAAACAAACTCAAGTG-A-TGAATTTTTGTTTCAAGTGAAAGAATTTGTA
192 AAATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAA-TTTTGTTTCGAGTGAAACAATTTCTA
* * * ** * *
3727 AAATTTGTGTTTCGAGGGAAAAGTGTAACTAGCGAGAGGAAATTGGTTTTCAA-
256 AAATTTGTGTTTCAAGAG-AAACTGTCTCAAGCGAGACGAAATT-GTTTT-AAG
* * * * * *
3780 AAAAACATTTTTAAGTGAGATGAATTTTTGTTTCCAATGAAACAATTTCTAAAATTTGTGTTTAA
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTT-CAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * *
3845 AGGGAAATTGTTTC-A-TGTGAC--AA--------AA-AAATA-AATCTCAAGTGAGATTAAA-T
65 AGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGA-TAAATT
* * * * * * * *
3895 TTTGTTTTGAGAGAAACAATTTTTTAAATTTGCGTTTCAAGGGAAAACTGTCTCAAGTGAGATGA
129 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGG-AAACTGTCTCAAGCGAGACGA
** * * *
3960 AATTTTTTTTAAGAAAAAGAATCTAAAGTG---TGAATTTT-TTTCTTAGTGAAACAATTTC-AA
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAATTTTGTTTC-GAGTGAAACAATTTCTAA
* * *
4020 AATTTTTGTTTCAAG-GAAAACTATCTCAAGAGAGACGAAATTGATTTTAAG
257 AATTTGTGTTTCAAGAG-AAACTGTCTCAAGCGAGACGAAATTG-TTTTAAG
* * * * * * * *
4071 AAAAATAATATTAAGTGAGAT-AATTTTTTGTTTCATATGAAACAATTTCTAGAATTTTTATTT-
1 AAAAACAATCTCAAGTGAGATGAA-ATTTTGTTTCA-GTGAAACAATTTCTAAAATTTGTGTTTC
* * * ** *
4134 AAGGGGAAACTGTCTCAAGTGAGACGAAATTGGCTTTAAGAAAAACAATCTCAAGTGATTTGAAT
64 AA-GGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAAT
* * * * ** * * * *
4199 TTTTGTTTCGAATGAAACAATTTCTAAATTTTTTGTTTTAAGAAAAAATTGTCTGAGGCAAGACG
128 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAA-AGGAAACTGTCTCAAGCGAGACG
* * * *
4264 AATTTGGTTTTAAGAAAAACAATCTCTAGTGAGATTAAATTTTGTTTCAAGTGAAACAATTTCTA
192 AAATTGGTTTTAAGAAAAACAATCTCAAGTGA-ATTGAATTTTGTTTCGAGTGAAACAATTTCTA
* * * *
4329 AAATTTGTTTTTCAAG-GAAAATTGTCTCAAGCAAGACGAAATTGGTTTAA-
256 AAATTTGTGTTTCAAGAG-AAACTGTCTCAAGCGAGACGAAATTGTTTTAAG
* * * * *
4379 AAAAACAATCTTAGGTAAAAT-AAATTTTTGTTTCAAGTGAAACAGTTTCTAAAATTTGTGTTTC
1 AAAAACAATCTCAAGTGAGATGAAA-TTTTGTTTC-AGTGAAACAATTTCTAAAATTTGTGTTTC
* * * *
4443 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTACGAAAAACAATCTCAAGTGTGATGAATA
64 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* * * ** * *
4508 ATTGTTTCGGGTAAAACAATTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGAGA-GA
129 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGGAAA-CTGTCTCAAGCGAGACG-
* * * ** * * * ** *
4572 AAATTAGTTTAAAGAAAAACAATCTCAAGCG-AGGGAA-ATTGTCTC-A-TG---CGA-GAC-GA
192 AAATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAATTTTGTTTCGAGTGAAACAATTTCTAA
** * * * *
4628 AA-TTGAT-TTT-AAGA-AAATCAATCTCAAGTGAGATGAAATTTTCTTTCGAG
257 AATTTG-TGTTTCAAGAGAAA-CTGTCTCAAGCGAGACGAAATTGT-TTT-AAG
** * * * **
4678 TGAAACAATTTC---T---A--AAATTTGTGTTTCA-AGAGA-AATTGTCTCAAGCGAA-ACGAA
1 AAAAACAATCTCAAGTGAGATGAAATTT-TGTTTCAGTGAAACAATT-TCT-AA---AATTTG--
*** * * * * ** *
4732 AATAG-TTCTAATAAAAACAT-TCTAAAGTGAGATGAATATT--TTTTCAAGTGAAA-TAT-T--
58 --T-GTTTC-AAGGGAAAC-TGTCTCAAGCGAGA-CAAAATTGGTTTT-AAGAAAAACAATCTCA
** * * * *** * * * **
4789 --TTCGA-AAATTTTTGTGTCAAGAGAAATTGTCTCAAGTGAGACGAAATTG-G-TTGAAAAAAA
116 AGTGAGATAAATTTTTGTTTCGAGTGAAACAATTTC---T-A-A--AATTTGTGTTTCAAAGGAA
* * * * ** * * * *
4849 ATATATTCTCAAGTGAGATGATTTTTGTTTCGAAAAAAAATGAAAATATATTCTCAAGTGAGA-T
174 A-CT-GTCTCAAGCGAGACGAAATTGGTTT-------TAA-GAAAA-ACAATCTCAAGTGA-ATT
* * * * * * * * * *
4913 GATTTTTTGTTTCAATGCGAAAAAATATCGAAAAATTT-TGTTTTAAGGGAAACTGTCTTAAGTG
227 GA-ATTTTGTTTCGA-GTGAAACAATTTC-TAAAATTTGTGTTTCAAGAGAAACTGTCTCAAGCG
* * *
4977 AGACAAAATTGGTTTTGAC
289 AGACGAAATT-GTTTTAAG
** * * * * * * * * * * *
4996 AAAATTAATCTCAAATGCGATTAATTTTTGTTTGGAGTCAAACAAATTGTGAAATTTATTTTTCA
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTT-CAGTGAAACAATTTCTAAAATTTGTGTTTCA
* * *
5061 AGGGAAAACTGTCTCAAGCGAGAAAAAATTGGTTTTTAAAAAAAACAATCTAAAGTGAGATGAAA
65 AGGG-AAACTGTCTCAAGCGAGACAAAATTGG-TTTTAAGAAAAACAATCTCAAGTGAGAT-AAA
* * *
5126 -TTTTGTTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTCAAGCGAGAT
127 TTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGG-AAACTGTCTCAAGCGAGAC
* * *
5190 GAAATTTGTTTTAA-AAAAAGAATCTCCAGTG-A-T-AATTTT-TTTCTTGAGTGAAACAATTT-
191 GAAATTGGTTTTAAGAAAAACAATCTCAAGTGAATTGAATTTTGTTTC--GAGTGAAACAATTTC
* * * *
5249 TAAAATTTTTGTTTCAAGATAAACTATCTCAAGAGAGACGAAATTGATTTTAAG
254 TAAAATTTGTGTTTCAAGAGAAACTGTCTCAAGCGAGACGAAATTG-TTTTAAG
* * * * * * ** * *
5303 AAAAAATAATATCAAATGAGAT-AATTTTTTGTTTCATATCAAACAAAATCTAAAATTTTTATTT
1 -AAAAACAATCTCAAGTGAGATGAA-ATTTTGTTTCA-GTGAAACAATTTCTAAAATTTGTGTTT
* * * * * * * * * ** *
5367 CAAGGGAAATTGTTTGAGGCAAAACGAAATTAGTTTTAAGAGAAACAATCTCAAGTGATTTGAAT
63 CAAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAAT
* * * * * * * * * *
5432 TTTTGTTTCAAGTGAAACAATTTCTAAATTTTTTGTTTCAAGAAGAAATTGTTTGAGGCAAGATG
128 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAA-AGGAAACTGTCTCAAGCGAGACG
* ** *
5497 AATTTGGTTTTAAGAAAAAGTATTTCAAGTG-ATATGAAATTTTGTTTC-ATGTGAAACAATTTC
192 AAATTGGTTTTAAGAAAAACAATCTCAAGTGAAT-TG-AATTTTGTTTCGA-GTGAAACAATTTC
* * * * * * *
5560 TAAAATTTGTTTTTTAAGGGAAACTGTATTAAGTGAGATGAAATTGGTTTTAAG
254 TAAAATTTGTGTTTCAAGAGAAACTGTCTCAAGCGAGACGAAATT-GTTTTAAG
* * * * *
5614 AAAAACAATCTC-AGAGAAAT-AAATTTTTGTTTCGAGTGAAGCAATTTCTAAAATTTTTGTTTG
1 AAAAACAATCTCAAGTGAGATGAAA-TTTTGTTTC-AGTGAAACAATTTCTAAAATTTGTGTTTC
* *
5677 AAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATT
64 AAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATT
* * * * *
5742 TTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTGAAGGGAAAACTGTGTCAAGTGAGA--A
129 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGG-AAACTGTCTCAAGCGAGACGA
* * *
5805 AATTGATTTTAAGAAAAACAATCTCAAGT-AAGATGAATTTTTGTTTCTAGTG-----------A
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGAA-TTGAA-TTTTGTTTCGAGTGAAACAATTTCTA
* * * * *
5858 AAATTTGGGTTTTAAGGGAAATTGTCTCATAG-GAGACG-AATTGAATTTAAG
256 AAATTTGTGTTTCAAGAGAAACTGTCTCA-AGCGAGACGAAATTG-TTTTAAG
* * *
5909 AAAATCAATCTCAAGTGAGATGAAATTTT-TTTCGAGTGAAACCATTTCTAAAATTTGTGTTTAA
1 AAAAACAATCTCAAGTGAGATGAAATTTTGTTTC-AGTGAAACAATTTCTAAAATTTGTGTTTCA
* * * * ** * *
5973 AGCGAAATTGTTTTAAGCGAGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAATTT
65 AGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTT
* * * * * *
6038 TTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTT-AGAGGGAAAATTATCTCAGGCGAGATGA
130 TTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCA-AAGG-AAACTGTCTCAAGCGAGACGA
* * * ** * * *
6102 AAATGGTTCTAAGAAAAACATTCTCAAGTGAGA-TGAATTTT-TTTTAAGTGAAATATTTTCGAA
193 AATTGGTTTTAAGAAAAACAATCTCAAGTGA-ATTGAATTTTGTTTCGAGTGAAACAATTTCTAA
* * * * * *
6165 AATTTTTGTTTCAAGGGAAATTGTCTCAAGCGAGACAAAATCGGTTATAA-
257 AATTTGTGTTTCAAGAGAAACTGTCTCAAGCGAGACGAAAT-TGTTTTAAG
* * * ***
6215 AACAATATTCTCAAGTGAGAT-AAATTTTTGTTTCGAGTGAAACAATATGAAAAAATTT-TGTTT
1 AAAAACAATCTCAAGTGAGATGAAA-TTTTGTTTC-AGTGAAACAAT-TTCTAAAATTTGTGTTT
* * * * * * *
6278 GAAGGAAAACTATCTCAAGTGAGACGAAATTGATTTTAACAAAAA
63 CAAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAA
6323 TAATTTTTAT
Statistics
Matches: 3411, Mismatches: 713, Indels: 508
0.74 0.15 0.11
Matches are distributed among these distances:
289 3 0.00
290 15 0.00
291 108 0.03
292 32 0.01
293 23 0.01
294 54 0.02
295 225 0.07
296 79 0.02
297 128 0.04
298 42 0.01
299 196 0.06
300 13 0.00
302 13 0.00
303 73 0.02
304 89 0.03
305 286 0.08
306 291 0.09
307 232 0.07
308 403 0.12
309 563 0.17
310 236 0.07
311 117 0.03
312 16 0.00
313 4 0.00
315 3 0.00
316 1 0.00
317 1 0.00
318 15 0.00
319 33 0.01
320 22 0.01
321 11 0.00
322 28 0.01
323 9 0.00
324 5 0.00
325 6 0.00
326 7 0.00
327 7 0.00
328 19 0.01
329 3 0.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (306 bp):
AAAAACAATCTCAAGTGAGATGAAATTTTGTTTCAGTGAAACAATTTCTAAAATTTGTGTTTCAA
GGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTT
TGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAAGGAAACTGTCTCAAGCGAGACGAAAT
TGGTTTTAAGAAAAACAATCTCAAGTGAATTGAATTTTGTTTCGAGTGAAACAATTTCTAAAATT
TGTGTTTCAAGAGAAACTGTCTCAAGCGAGACGAAATTGTTTTAAG
Found at i:2665 original size:196 final size:194
Alignment explanation
Indices: 2414--6256 Score: 626
Period size: 205 Copynumber: 19.0 Consensus size: 194
2404 AAATTTTTGT
*
2414 TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA
1 TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGA
** * * *
2479 ATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGGTTT-ATGGGAAAACTGTGTCAATTGAG
66 AAATTTGTTTCGAGTAAAACAATTTCTAAAATTTAT-GTTTAAAGGG-AAACTGTGTCAAGTGAG
* * * *
2543 A-GAAAATTGGTTTTAAGAAAAACAATTTCAAGTGAGATGAATTTTTGTTTCTAGTGAAAATTTG
129 ATG-AAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAAATTTG
2607 AG
193 AG
* * * * *
2609 TTTAAAGGGAAATTGTCTCATGGGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATG
1 TTTAAA-GGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
* * *
2674 AAAATTTGTTTCGAGTGAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTTTTAAGTGAGA
65 AAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGAGA
*
2739 TGAAATTGGTTTTGAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTC
130 TGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTG----------
2804 TAAAATTTGAG
185 -AAAATTTGAG
* * * * * * * * *
2815 TTTCAAGGGAAAAATGTCTCAAGCGAGATGAAAATGGTTCTAAGAAAAACATTATCAAGTGAGAT
1 TTT-AAAGG-AAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
*** * * ** **** * * * * * **
2880 GATTTTTTTTTTC-AATTGATTTTTTTCAACAAATTTTTGTTTTAAAGGG-CATTGTCTCAAACG
64 GAAAATTTGTTTCGAGTAAAACAATTTCTA-AAATTTATG-TTTAAAGGGAAACTGTGTCAAGTG
* * * * * *
2943 AGA-AAAATTGGTTGTAA-AAAATATATTCTCATA-TGAGAT-AAATTTTTGTTTCAAGTGAAAC
127 AGATGAAATTGGTTTTAAGAAAA-ACAATCT-AAAGTGAGATGAAA-TTTTGTTTCGAGTG----
3004 AAATTGTGAAATTTGAG
185 --A-----AAATTTGAG
* * * * * * * * *
3021 TTTCAAGTTAAAATTGTCTCAAGTGAGACGAAATTGGTTATAAGAAAAACATTCTCAAGTGGGAT
1 TTTAAAG--GAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
* * * * * * * * *
3086 G-AAGTTTAATTTCGAGTGAAACAATTTCTAACATTCATGTTTCAAGGGAAAGATGTCTCAAGCG
64 GAAAATTT-GTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAA-CTGTGTCAAGTG
** * * * * * * * * ** * * *
3150 AGACAAAATTAGTTATAAGGAAAAGAATCTTAAGTAAGA-CAATTTTTTGAGTAAAACAATTTTA
127 AGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAA-ATTTT--GT--TTCGA-GTGA
3214 AAATTT-ATG
186 AAATTTGA-G
* * * * * * * *
3223 TTTCAAGGGAAATTGTCTCAAGGGAGGA-AAAATTGGTTTTAAGAAAAATAATCTCAAGCGAGAT
1 TTT-AAAGGAAACTATCTCAAGCGA-GACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
** * * * ** * **
3287 -ATATTTTTGTTTC-ACGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACCATCTCAAGCA
64 GA-AAATTTGTTTCGA-GTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTG
*** * * * ** *
3350 AGGCAAAACTGGTTTTATGAAAAACAATCTCAAGTGATTTG-AATTTTTTTTCGACTGAAACAAT
127 AGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGA--G-------
* *
3414 TTCTAAAATTTGTG
183 -T-GAAAATTTGAG
* * * *
3428 TTTCAAGGAAAAAC-ATTATCACGCGAGACGAAATTCG-TTTTAAG-AAAACAATCTCAAGTGTG
1 TTTAAAGG--AAACTA-TCTCAAGCGAGACGAAATT-GATTTTAAGAAAAACAATCTCAAGTGAG
* * * * * * * * * * *
3490 ATG-AATTTTCATTTTGAGTGAAACAATTTCTAGAATTTGTATTTCAAGAGAAACTGTTTCAAGG
62 ATGAAAATTT-GTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGT
* * * * * *
3554 GAGACGAAATTGGTTTTAATAAAAAGCAATCTGAAGTGAAAT-AAATTTTTATTTCAAGTGAAAC
126 GAGATGAAATTGGTTTTAAGAAAAA-CAATCTAAAGTGAGATGAAA-TTTTGTTTCGAGTG-AA-
3618 AATTTCTGAAATTTGTG
187 AA-TT-TG--A-----G
* * * * * * *
3635 TTTCAAGTGAAACTGTTTCAAGCAAGATGAAATTGGTTTTAAGAAAAACAAACTCAAGT--GATG
1 TTTAAAG-GAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
** * * * * * ** * * *
3698 AATTTTTGTTTCAAGTGAAAGAATTTGTAAAATTTGTGTTTCGAGGGAAA-AGTGTAACTAGCGA
65 AAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGT--CAAGTGA
* * * * * * * *
3762 GAGGAAATTGGTTTTCAA-AAAAACATTTTTAAGTGAGATGAATTTTTGTTTCCAATGAAACAAT
128 GATGAAATTGGTTTT-AAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAA-ATT
3826 T---
191 TGAG
* ** * * * * * * *
3827 TCT-AA--AATTTGTGTTTAA---AG-GGAAATTGTTTCATGTGACAAAAAAATAAATCTCAAGT
1 TTTAAAGGAAACTAT-CTCAAGCGAGACGAAATTGATT--T-T-A-AGAAAAA-CAATCTCAAGT
* * * * * ** * *
3885 GAGATTAAATTTTGTTTTGAG-AGAAACAATTTTTTAAATTTGCGTTTCAAGGGAAAACTGTCTC
59 GAGATGAAAATTTGTTTCGAGTA-AAACAATTTCTAAAATTTATGTTTAAAGGG-AAACTGTGTC
** * *
3949 AAGTGAGATGAAATTTTTTTTAAGAAAAAGAATCTAAAGT--G-TG-AATTTT-TTTCTTAGTGA
122 AAGTGAGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTC-GAGTG-
*
4009 AACAATTTCAAAATTTTTG
185 AA-AATTT---GA-----G
* * * * *
4028 TTTCAAGGAAAACTATCTCAAGAGAGACGAAATTGATTTTAAGAAAAATAATATTAAGTGAGAT-
1 TTTAAAGG-AAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
** * * * * *
4092 AATTTTTTGTTTC-A-TATGAAACAATTTCTAGAATTTTTATTTAAGGGGAAACTGTCTCAAGTG
65 AA-AATTTGTTTCGAGTA--AAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTG
* * * ** * *
4155 AGACGAAATTGGCTTTAAGAAAAACAATCTCAAGTGATTTGAATTTTTGTTTCGAATGAAACAAT
127 AGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTG-AA-AA-
*
4220 TTCTAAATTTTTTG
189 TT-T-GA------G
** * * * * * * * *
4234 TTTTAAGAAAAAATTGTCTGAGGCAAGACGAATTTGGTTTTAAGAAAAACAATCTCTAGTGAGAT
1 -TTTAA-AGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
* * * * * * * * * * **
4299 TAAATTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTTTTTCAAGGAAAATTGTCTCAAGCAAG
64 GAAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGAG
* * * * *
4364 ACGAAATTGG-TTTAA-AAAAACAATCTTAGGTAAAAT-AAATTTTTGTTTCAAGTGAAACAGTT
129 ATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAA-TTTTGTTTC----G----AG--
* *
4426 TCTAAAATTTGTG
183 T-GAAAATTTGAG
* * * * * *
4439 TTTCAAGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTACGAAAAACAATCTCAAGTGTGATG
1 TTT-AAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
* *** * *
4504 AATAA-TTGTTTCGGGTAAAACAATTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGA
65 AA-AATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAA-CTGTGTCAAGTGA
* * * * * ** * *
4568 GA-GAAAATTAGTTTAAAGAAAAACAATCTCAAGCGAG-GGAAATTGTCTCATGCGAGACG-AAA
128 GATG-AAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATT-T-TGTTTCGAG-TGAAAA
4630 -TTGA-
189 TTTGAG
* * * * * * * ** *
4634 TTTTAAGAAAATCAATCTCAAGTGAGATGAAATT-TTCTTTCGAGTGAAACAATTTC---T---A
1 TTTAAAGGAAA-CTATCTCAAGCGAGACGAAATTGAT-TTT-AAGAAAAACAATCTCAAGTGAGA
* * * *** *
4692 --AAATTTGTGTTTCAAG--AGA-AATTGTCTCAAGCGAAACGAAAATAGTTCTAATA--AAAAC
63 TGAAAATT-TGTTTCGAGTAAAACAATT-TCT--A---AAA--TTTAT-GTT-TAA-AGGGAAAC
* * * *** *
4750 AT-TCTAAAGTGAGATGAATATT--TTTTCAAGTGAAATATTTTCGAAAATTTTTGTGTCAAGA-
116 -TGTGTCAAGTGAGATGAA-ATTGGTTTT-AA--GAAAAACAATC-TAAA-----GTG---AGAT
* * *** * *
4811 GAAATTGTCTCAAGTGAGACGAAA-TTG-G
167 GAAATTTTGTTTCGAGTGA--AAATTTGAG
* ** * * * ** * * *
4839 TTGAAAAAAAATATATTCTCAAGTGAGATGATTTTTG-TTTCGAAAAAAAATGAAAATATATTCT
1 TTTAAAGGAAA-CTA-TCTCAAGCGAGACGA-AATTGATTT-------TAA-GAAAA-ACAATCT
*** * * * * *
4903 CAAGTGAGATGATTTTTTGTTTCAATGCGAAAA-AATATCGAAAAATTT-TGTTTTAAGGGAAAC
54 CAAGTGAGATGAAAATTTGTTTCGA-G-TAAAACAATTTC-TAAAATTTATGTTTAAAGGGAAAC
* * ** * * ** * * * *
4966 TGTCTTAAGTGAGACAAAATTGGTTTTGACAAAATTAATCTCAAA-TGCGATTAATTTTTGTTTG
116 TGTGTCAAGTGAGATGAAATTGGTTTTAAGAAAAACAATCT-AAAGTGAGATGAAATTTTGTTTC
* *
5030 GAGTCAAACAAATTGTGAAA
180 GAGT--GA-AAATT-TG-AG
* ** * * *
5050 TTTATTTTTCAAGGGAAAACTGTCTCAAGCGAGAAAAAATTGGTTTTTAAAAAAAACAATCTAAA
1 TTTA------AA-GG-AAACTATCTCAAGCGAGACGAAATT-GATTTTAAGAAAAACAATCTCAA
* * * * * *
5115 GTGAGATGAAATTTTGTTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCT
57 GTGAGATGAAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGG-AAACTGTGT
* * * **
5180 CAAGCGAGATGAAATTTGTTTTAA-AAAAAGAATCTCCAGT--GAT--AATTTT-TTTCTTGAGT
121 CAAGTGAGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTC--GAGT
*
5239 GAAACAATTTTAAAATTTTTG
184 G-AA-AA-TTT--GA-----G
* * * * * *
5260 TTTCAAGATAAACTATCTCAAGAGAGACGAAATTGATTTTAAGAAAAAATAATATCAAATGAGAT
1 TTTAAAG-GAAACTATCTCAAGCGAGACGAAATTGATTTTAAG-AAAAACAATCTCAAGTGAGAT
** ** * * * * * * * *
5325 -AATTTTTTGTTTC-A-TATCAAACAAAATCTAAAATTTTTATTTCAAGGGAAATTGTTTGAGGC
64 GAA-AATTTGTTTCGAGTA--AAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGT
* * * * * * ** * *
5387 AAAACGAAATTAGTTTTAAGAGAAACAATCTCAAGTGATTTGAATTTTTGTTTCAAGTGAAACAA
126 GAGATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTG-AA-AA
*
5452 TTTCTAAATTTTTTG
189 -TT-T-GA------G
* * * * * * * * * * ** * *
5467 TTTCAAGAAGAAATTGTTTGAGGCAAGATGAATTTGGTTTTAAGAAAAAGTATTTCAAGTGATAT
1 TTT-AA-AGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
* * * * * * *
5532 GAAATTTTGTTTC-ATGTGAAACAATTTCTAAAATTTGTTTTTTAAGGGAAACTGTATTAAGTGA
64 GAAAATTTGTTTCGA-GTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGA
* * *
5596 GATGAAATTGGTTTTAAGAAAAACAATCT-CAGAGAAAT-AAATTTTTGTTTCGAGTGAAGCAAT
128 GATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAA-TTTTGTTTCGAGTGAA--AA-
*
5659 TTCTAAAATTTTTG
189 TT-T--GA-----G
* * *
5673 TTTGAAGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATG
1 TTT-AAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
** * *
5738 AATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTGAAGGGAAAACTGTGTCAAGTGAG
65 AAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGG-AAACTGTGTCAAGTGAG
* * * * * *
5803 A--AAATTGATTTTAAGAAAAACAATCTCAAGTAAGATGAATTTTTGTTTCTAGTGAAAATTTGG
129 ATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAAATTTGA
5866 G
194 G
* * * * *
5867 TTTTAAGGGAAATTGTCTCATAG-GAGACG-AATTGAATTTAAGAAAATCAATCTCAAGTGAGAT
1 -TTTAAAGGAAACTATCTCA-AGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
* * * * * * * * *
5930 G-AAATTTTTTTCGAGTGAAACCATTTCTAAAATTTGTGTTTAAAGCGAAATTGTTTTAAGCGAG
64 GAAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGAG
*
5994 ATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTT
129 ATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTG---------
6059 CTAAAATTTGAG
185 --AAAATTTGAG
* * * * * * * *
6071 TTTAGAGGGAAAATTATCTCAGGCGAGATGAAAATGGTTCTAAGAAAAACATTCTCAAGTGAGAT
1 TTTA-AAGG-AAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGAT
* ** * * * * * * * * *
6136 G--AATTTTTTTTAAGTGAAATATTTTCGAAAATTTTTGTTTCAAGGGAAATTGTCTCAAGCGAG
64 GAAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGAG
** * * * * * *
6199 ACAAAATCGGTTATAA-AACAATATTCTCAAGTGAGAT-AAATTTTTGTTTCGAGTGAAA
129 ATGAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAA-TTTTGTTTCGAGTGAAA
6257 CAATATGAAA
Statistics
Matches: 2710, Mismatches: 629, Indels: 620
0.68 0.16 0.16
Matches are distributed among these distances:
185 9 0.00
186 6 0.00
187 7 0.00
188 13 0.00
189 21 0.01
190 14 0.01
191 27 0.01
192 46 0.02
193 157 0.06
194 45 0.02
195 116 0.04
196 113 0.04
197 10 0.00
198 2 0.00
199 6 0.00
200 42 0.02
201 137 0.05
202 103 0.04
203 112 0.04
204 195 0.07
205 468 0.17
206 378 0.14
207 379 0.14
208 114 0.04
209 62 0.02
210 9 0.00
211 5 0.00
212 5 0.00
213 7 0.00
214 17 0.01
215 9 0.00
216 23 0.01
217 21 0.01
218 4 0.00
219 3 0.00
220 4 0.00
221 8 0.00
222 5 0.00
223 1 0.00
224 2 0.00
225 5 0.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.34
Consensus pattern (194 bp):
TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGA
AAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGTTTAAAGGGAAACTGTGTCAAGTGAGAT
GAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAAATTTGAG
Found at i:2786 original size:195 final size:195
Alignment explanation
Indices: 2414--2796 Score: 547
Period size: 196 Copynumber: 2.0 Consensus size: 195
2404 AAATTTTTGT
*
2414 TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA
1 TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGA
** * * *
2479 ATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGGTTTATGGGAAAACTGTGTCAATTGAGA
66 AAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGGTTTAAGGGAAAACTGTGTCAAGTGAGA
* * * *
2544 GAAAATTGGTTTTAAGAAAAACAATTTCAAGTGAGATGAATTTTTGTTTCTAGTGAAAATTTGAG
131 GAAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAAATTTGAG
* * * * *
2609 TTTAAAGGGAAATTGTCTCATGGGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATG
1 TTTAAA-GGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATG
* * *
2674 AAAATTTGTTTCGAGTGAAACAATTTCTAAAATTTAT-GTTTAAAGGG-AAACTGTTTTAAGTGA
65 AAAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGGTTT-AAGGGAAAACTGTGTCAAGTGA
*
2737 GATG-AAATTGGTTTTGAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAA
129 GA-GAAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAA
2797 CAATTTCTAA
Statistics
Matches: 166, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
195 76 0.46
196 90 0.54
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (195 bp):
TTTAAAGGAAACTATCTCAAGCGAGACGAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGA
AAATTTGTTTCGAGTAAAACAATTTCTAAAATTTATGGTTTAAGGGAAAACTGTGTCAAGTGAGA
GAAAATTGGTTTTAAGAAAAACAATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAAAATTTGAG
Found at i:3365 original size:614 final size:605
Alignment explanation
Indices: 1645--4600 Score: 2267
Period size: 614 Copynumber: 4.8 Consensus size: 605
1635 ACAAAAAAAA
* * * ** * *
1645 TCTCAAGTGAGATGAATTTTT-TTTGA-GTGAAACAATTTCTAAAATTTGTGTTTCGAGGGAAAT
1 TCTCAAGTGAGATGAATTTTTGTTTCATGTGAAACAATTTCAAAAATTTGTTTTTAAAGGAAAAC
* * * * * * *
1708 TATCTTAATCGAGACCAAATTGGTTTTAAGAAGAATAATCTCA-AGTGAGATGAGTTTTTTTTTC
66 TGTCTCAAACGAGACAAAATTGGTTTTAAGAA-AATAATCTCATA-TGAGATAAATTTTTGTTTC
* **
1772 GAGTGAAACAATTTGTAAAATTTGTTTTTCAAGGGAAAACTGTCTCAA-TCGAGAAAAAATTGGT
129 GAGTGAAACAATTTGTAAAATTTGTGTTTCAA--GAAAACTGTCTCAAGT-GAGACGAAATTGGT
* *
1836 TTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAGACAATTTCTAAAATTTGT
191 TTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGT
** * * *
1901 GTTTCAAGGGAAAACTGTCTCAAGAGAGATGAAATTTGTTTTAAGAAAAAGAATCTCAAGT-GAT
256 GTTTCAAGGGAAAACTGTCTCAAGAGAGACAAAATTAGTTTTAAGAAAAAGAATCTTAAGTAGAC
* * * *
1965 AATTTTTTCCTAAGTGAAACAATTTTAAAATTTTTGTTTCAAGGGAAACTATCTCAAGAGAGACG
321 AA-TTTTT--T-AGT-AAACAATTTTAAAATTTATGTTTCAAGGGAAATTGTCTCAAGGGAGACG
* * * **
2030 AAATTGATTTTAAGAAAAATAATATCAAGTGAGATAATTTTTTGTTTCATATCAAACAAAATCTA
381 AAATTGATTTTAAGAAAAATAATCTCAAGTGAGATAA-TTTTTGTTTCA-GTGAAACAATTTCTA
* * * * *
2095 AAATTTTTGTTTCAAGGGAAATTGTGTCAAGTGAGATGAAATTGGTTTTAAGAGAAACAATATCA
444 AAATTTATGTTTCAAGGGAAACTGTCTCAAGTGAGATGAAATTGGTTTT-AGAAAAACAATCTCA
* ** *
2160 AGTGATTTAAATTTTTGTTTCGAGTGAAACAATTTCTAATTTTTTTGTTTCAA--GAAGAAATTG
508 AGTGATTGAAA-TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAA-AAA-TG
* * * * * *
2223 TTTGAGGCAAGATGAATTTAGTTTTAAGAAAAATAT
570 TATCAAGCGAGATGAAATTAGTTTTAAGAAAAACAT
* * * *
2259 ATCTCAGGTGAGATGAAATTTTGTTTCATGTGAAACAATTTCTAAAATTTGTTTTTCAAGGAAAA
1 -TCTCAAGTGAGATGAATTTTTGTTTCATGTGAAACAATTTCAAAAATTTGTTTTTAAAGGAAAA
* * * * *
2324 CTGTCTCAAGCGAGACAAAATTGGTTTTAAGAAAAACAATCTC-T-GGAAATAAATGTTTGTTTC
65 CTGTCTCAAACGAGACAAAATTGGTTTTAAG-AAAATAATCTCATATGAGATAAATTTTTGTTTC
* * * * * * *
2387 GAGTGAAGCAATTTATAAAATTTTTGTTTTAAAGGAAACTATCTCAAGCGAGACGAAATTGGTTT
129 GAGTGAAACAATTTGTAAAATTTGTG-TTTCAAGAAAACTGTCTCAAGTGAGACGAAATTGGTTT
* *
2452 TAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGG
193 TAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGT-G
* * ** * * *
2517 TTT-ATGGGAAAACTGTGTCAATTGAGAGAAAATTGGTTTTAAGAAAAACAAT-TTCAAGTGAGA
257 TTTCAAGGGAAAACTGTCTCAAGAGAGACAAAATTAGTTTTAAGAAAAAGAATCTT-AAGT-AGA
* ** * * * * *
2580 TGAA-TTTTT-GT-TTCTA-GTGAAAATTTGA-GTTTAAAGGGAAATTGTCTCATGGGAGACGAA
320 -CAATTTTTTAGTAAACAATTTTAAAATTT-ATGTTTCAAGGGAAATTGTCTCAAGGGAGACGAA
**
2640 ATTGATTTTAAG-AAAATCAATCTCAAGTGAGATGAAAATTTGTTTCGAGTGAAACAATTTCTAA
383 ATTGATTTTAAGAAAAAT-AATCTCAAGTGAGAT-AATTTTTGTTTC-AGTGAAACAATTTCTAA
* * * *
2704 AATTTATGTTTAAAGGGAAACTGTTTTAAGTGAGATGAAATTGGTTTTGAGAAAAACAATCTAAA
445 AATTTATGTTTCAAGGGAAACTGTCTCAAGTGAGATGAAATTGGTTTT-AGAAAAACAATCTCAA
* * *
2769 GTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTTCAAGGGAAAAATGTCT
509 GTGA-TTGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAAATGTAT
* * *
2834 CAAGCGAGATGAAAATGGTTCTAAGAAAAACAT
573 CAAGCGAGATGAAATTAGTTTTAAGAAAAACAT
* * * **** * *
2867 TATCAAGTGAGATGATTTTTTTTTTCAAT-TG-ATTTTTTTCAACAAATTTTTGTTTTAAAGG-G
1 TCTCAAGTGAGATGAATTTTTGTTTC-ATGTGAAACAATTTCAA-AAATTTGT-TTTTAAAGGAA
* * *
2929 CATTGTCTCAAACGAGA-AAAATTGGTTGTAA-AAAATATATTCTCATATGAGATAAATTTTTGT
63 AACTGTCTCAAACGAGACAAAATTGGTTTTAAGAAAATA-A-TCTCATATGAGATAAATTTTTGT
* * * * *
2992 TTCAAGTGAAACAAATTGTGAAATTTGAGTTTCAAGTTAAAATTGTCTCAAGTGAGACGAAATTG
126 TTCGAGTGAAACAATTTGTAAAATTTGTGTTTCAAG--AAAACTGTCTCAAGTGAGACGAAATTG
* * * * ** * *
3057 GTTATAAGAAAAACATTCTCAAGTGGGATGAAGTTTAATTTCGAGTGAAACAATTTCTAACATTC
189 GTTTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT
* * * *
3122 ATGTTTCAAGGGAAAGA-TGTCTCAAGCGAGACAAAATTAGTTATAAGGAAAAGAATCTTAAGTA
254 GTGTTTCAAGGGAAA-ACTGTCTCAAGAGAGACAAAATTAGTTTTAAGAAAAAGAATCTTAAGT-
3186 AGACAATTTTTTGAGTAAAACAATTTTAAAATTTATGTTTCAAGGGAAATTGTCTCAAGGGAGGA
317 AGACAATTTTTT-AGT-AAACAATTTTAAAATTTATGTTTCAAGGGAAATTGTCTCAAGGGA-GA
* * *
3251 -AAAATTGGTTTTAAGAAAAATAATCTCAAGCGAGATATATTTTTGTTTCACGTGAAACAATTTC
379 CGAAATTGATTTTAAGAAAAATAATCTCAAGTGAGATA-ATTTTTGTTTCA-GTGAAACAATTTC
* ** ** *** *
3315 TAAAATTTGTGTTTCAAGGGAAACCATCTCAAGCAAGGCAAAACTGGTTTTATGAAAAACAATCT
442 TAAAATTTATGTTTCAAGGGAAACTGTCTCAAGTGAGATGAAATTGGTTTTA-GAAAAACAATCT
* * *
3380 CAAGTGATTTG-AATTTTTTTTCGACTGAAACAATTTCTAAAATTTGTGTTTCAAGGAAAAACAT
506 CAAGTGA-TTGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAA-AT
* * * *
3444 -TATCACGCGAGACGAAATTCGTTTTAAG-AAAACAA
569 GTATCAAGCGAGATGAAATTAGTTTTAAGAAAAACAT
* * * * * *
3479 TCTCAAGTGTGATGAATTTTCAT-TTTGA-GTGAAACAATTTCTAGAATTTGTATTTCAA-GAGA
1 TCTCAAGTGAGATGAATTTT--TGTTTCATGTGAAACAATTTCAAAAATTTGTTTTTAAAGGA-A
* ** * * * * * *
3541 AACTGTTTCAAGGGAGACGAAATTGGTTTTAATAAAAAGCAATCTGA-AGTGAAATAAATTTTTA
63 AACTGTCTCAAACGAGACAAAATTGGTTTTAA-GAAAA-TAATCTCATA-TGAGATAAATTTTTG
* * * * * ** *
3605 TTTCAAGTGAAACAATTTCTGAAATTTGTGTTTCAAGTGAAACTGTTTCAAGCAAGATGAAATTG
125 TTTCGAGTGAAACAATTTGTAAAATTTGTGTTTCAAG-AAAACTGTCTCAAGTGAGACGAAATTG
* * * * *
3670 GTTTTAAGAAAAACAAACTCAAGT--GATGAATTTTTGTTTCAAGTGAAAGAATTTGTAAAATTT
189 GTTTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT
* * ** * * ** * * * *
3733 GTGTTTCGAGGGAAAAGTGTAACTAGCGAGAGGAAATTGGTTTTCAA-AAAAACATTTTTAAGTG
254 GTGTTTCAAGGGAAAACTGTCTCAAGAGAGACAAAATTAGTTTT-AAGAAAAAGAATCTTAAGT-
* * * * *
3797 AGATGAATTTTTGTTTCCAATGAAACAATTTCTAAAATTTGTGTTTAAAGGGAAATTGTTTC-A-
317 AGA-CAA--TTT-TTT--AGT-AAACAATTT-TAAAATTTATGTTTCAAGGGAAATTGTCTCAAG
* * * * * *
3860 TGTGAC---A---A----AA-AAATA-AATCTCAAGTGAGATTAAATTTTGTTTTGAGAGAAACA
374 GGAGACGAAATTGATTTTAAGAAAAATAATCTCAAGTGAGA-TAATTTTTG-TTTCAGTGAAACA
* * ** **
3913 ATTTTTTAAATTTGCGTTTCAAGGGAAAACTGTCTCAAGTGAGATGAAATTTTTTTTAAGAAAAA
437 ATTTCTAAAATTTATGTTTCAAGGG-AAACTGTCTCAAGTGAGATGAAATTGGTTTT-AGAAAAA
* * * *
3978 GAATCTAAAGTG--TG-AATTTT-TTTCTTAGTGAAACAATTTC-AAAATTTTTGTTTCAA-GGA
500 CAATCTCAAGTGATTGAAATTTTGTTTC-GAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGA
* * * * * * *
4037 AAACTATCTCAAGAGAGACGAAATT-GATTTTAAGAAAAATAA
564 AAAATGTATCAAGCGAGATGAAATTAG-TTTTAAGAAAAACAT
* * * * * * *
4079 TATTAAGTGAGAT-AATTTTTTGTTTCATATGAAACAATTTCTAGAATTT-TTATTTAAGGGGAA
1 TCTCAAGTGAGATGAA-TTTTTGTTTCATGTGAAACAATTTCAAAAATTTGTT-TTTAAAGGAAA
** * * * ** *
4142 ACTGTCTCAAGTGAGACGAAATTGGCTTTAAGAAAAACAATCTCA-AGTGATTTGAATTTTTGTT
64 ACTGTCTCAAACGAGACAAAATTGGTTTTAAG-AAAATAATCTCATA-TGAGATAAATTTTTGTT
* * * * * * * * ** *
4206 TCGAATGAAACAATTTCTAAATTTTTTGTTTTAAGAAAAAATTGTCTGAGGCAAGACGAATTTGG
127 TCGAGTGAAACAATTTGTAAAATTTGTGTTTCAAG--AAAACTGTCTCAAGTGAGACGAAATTGG
* * *
4271 TTTTAAGAAAAACAATCTCTAGTGAGATTAAATTTTGTTTCAAGTGAAACAATTTCTAAAATTTG
190 TTTTAAGAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTG
* * * * * *
4336 TTTTTCAA-GGAAAATTGTCTCAAGCA-AGACGAAATT-GGTTTAA-AAAAACAATCTTAGGTAA
255 TGTTTCAAGGGAAAACTGTCTCAAG-AGAGACAAAATTAGTTTTAAGAAAAAGAATCTTAAGT-A
* * * * * *
4397 AATAAATTTTTGTTTCAAGTGAAACAGTTTCTAAAATTTGTGTTTCAAGGGAAACTGTCTCAAGC
318 GA-CAA--TTT-TTT--AGT-AAACAATTT-TAAAATTTATGTTTCAAGGGAAATTGTCTCAAGG
* * * * * ** * *
4462 GAGACAAAATTGGTTTTACGAAAAACAATCTCAAGTGTGATGAATAATTGTTTCGGGTAAAACAA
375 GAGACGAAATTGATTTTAAGAAAAATAATCTCAAGTGAGAT-AATTTTTGTTTC-AGTGAAACAA
*** * * * *
4527 TTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGAGA-GAAAATTAGTTTAAAGAAAAA
438 TTTCTAAAATTTATGTTTCAAGGGAAA-CTGTCTCAAGTGAGATG-AAATTGGTTT-TAGAAAAA
4591 CAATCTCAAG
500 CAATCTCAAG
4601 CGAGGGAAAT
Statistics
Matches: 1885, Mismatches: 356, Indels: 202
0.77 0.15 0.08
Matches are distributed among these distances:
598 3 0.00
599 155 0.08
600 144 0.08
601 47 0.02
602 42 0.02
603 48 0.03
604 53 0.03
605 4 0.00
606 23 0.01
607 56 0.03
608 258 0.14
609 142 0.08
610 8 0.00
611 89 0.05
612 61 0.03
613 223 0.12
614 329 0.17
615 78 0.04
616 24 0.01
617 96 0.05
618 2 0.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (605 bp):
TCTCAAGTGAGATGAATTTTTGTTTCATGTGAAACAATTTCAAAAATTTGTTTTTAAAGGAAAAC
TGTCTCAAACGAGACAAAATTGGTTTTAAGAAAATAATCTCATATGAGATAAATTTTTGTTTCGA
GTGAAACAATTTGTAAAATTTGTGTTTCAAGAAAACTGTCTCAAGTGAGACGAAATTGGTTTTAA
GAAAAACAATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTC
AAGGGAAAACTGTCTCAAGAGAGACAAAATTAGTTTTAAGAAAAAGAATCTTAAGTAGACAATTT
TTTAGTAAACAATTTTAAAATTTATGTTTCAAGGGAAATTGTCTCAAGGGAGACGAAATTGATTT
TAAGAAAAATAATCTCAAGTGAGATAATTTTTGTTTCAGTGAAACAATTTCTAAAATTTATGTTT
CAAGGGAAACTGTCTCAAGTGAGATGAAATTGGTTTTAGAAAAACAATCTCAAGTGATTGAAATT
TTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAAATGTATCAAGCGAGATGAA
ATTAGTTTTAAGAAAAACAT
Found at i:4277 original size:104 final size:100
Alignment explanation
Indices: 3875--6322 Score: 707
Period size: 103 Copynumber: 24.0 Consensus size: 100
3865 CAAAAAAATA
* * * * ***
3875 AATCTCAAGTGAGATTAAATTTTGTTTTGAGA-GAAACAATTTTTTAAATTTGCGTTTCAAGGGA
1 AATCTCAAGTGA-AATAATTTTTG-TTTCA-ATGAAACAA-TTTCTAAATTTTTTTTTCAA-GGA
** * ** *
3939 AAACTGTCTCAAGTGAGATGAAATTTTTTTTAAGAAAAAG
61 AAACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * *
3979 AATCTAAAGTG---TGAATTTTT-TTCTTAGTGAAACAATTTCAAAATTTTTGTTTCAAGGAAAA
1 AATCTCAAGTGAAAT-AATTTTTGTT-TCAATGAAACAATTTCTAAATTTTTTTTTCAAGGAAAA
* * *
4040 CTATCTCAAG-AGAGACGAAATTGATTTTAAGAAAAAT
64 CTGTCTCAAGCA-AGACGAAATTGGTTTTAAGAAAAAC
* * * * *
4077 AATATTAAGTGAGATAATTTTTTGTTTCATATGAAACAATTTCTAGAATTTTTATTT-AAGGGGA
1 AATCTCAAGTGAAATAA-TTTTTGTTTCA-ATGAAACAATTTCTA-AATTTTTTTTTCAA-GGAA
** *
4141 AACTGTCTCAAGTGAGACGAAATTGGCTTTAAGAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
** * *
4180 AATCTCAAGTGATTTGAATTTTTGTTTCGAATGAAACAATTTCTAAATTTTTTGTTTTAAGAAAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCTAAATTTTTT-TTTCAAG-GAA
* * * *
4245 AATTGTCTGAGGCAAGACGAATTTGGTTTTAAGAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * *
4284 AATCTCTAGTGAGATTAAATTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTTTTTCAAGGAAA
1 AATCTCAAGTGA-AATAATTTTTGTTTCAA-TGAAACAATTTCT-AAATTTTTTTTTCAAGGAAA
*
4349 ATTGTCTCAAGCAAGACGAAATTGG-TTTAA-AAAAAC
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * * *
4385 AATCTTAGGTAAAATAAATTTTTGTTTCAAGTGAAACAGTTTCTAAAATTTGTGTTTCAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTCAA-TGAAACAATTTCT-AAATTTTTTTTTCAAGGAAA
* * *
4450 ACTGTCTCAAGCGAGACAAAATTGGTTTTACGAAAAAC
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
** ** ** * ***
4488 AATCTCAAGTGTGATGAATAATTGTTTCGGGTAAAACAATTTCTAAAATTTGCATTTCAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCAA-GGAA
* * * * *
4553 ATCTGTGTCAAGCGAGA-GAAAATTAGTTTAAAGAAAAAC
62 AACTGTCTCAAGCAAGACG-AAATTGGTTTTAAGAAAAAC
* *** * * * ** * **
4592 AATCTCAAGCGAGGGAA--ATTGTCTC-ATG---CGA-GACGAAA-TTGATTTT-AA-GAAAATC
1 AATCTCAAGTGAAATAATTTTTGTTTCAATGAAACAATTTCTAAATTTTTTTTTCAAGGAAAA-C
** ** * * * **
4647 AATCTCAAGTGAGATGAAATT-TTCTTTCGAGTGAAAC
65 TGTCTCAAGCAAGACGAAATTGGT-TTT-AAGAAAAAC
* * * **** **
4684 AATTTC---T--AA-AATTTGTGTTTCAA-GAGA-AATTGTCTCAAGCGAAACGAAAATAGTTCT
1 AATCTCAAGTGAAATAATTTTTGTTTCAATGAAACAATT-TCT------AAA--TTTTTTTTTC-
** * ** * ** *
4741 AATAAAAACAT-TCTAAAGTGAGATGAATATT--TTTTCAAGTGAAAT
56 AAGGAAAAC-TGTCTCAAGCAAGACGAA-ATTGGTTTT-AAGAAAAAC
* * * * *** ** *
4786 ATTTTC----G-AA-AATTTTTGTGTCAA-GAGA-AATTGTCTCAAGTGAGACGAAATTGGTTGA
1 AATCTCAAGTGAAATAATTTTTGTTTCAATGAAACAATT-TCT--A---A-A--TTTTTTTTTCA
** * * ** * ** * * *
4843 AAAAAAATATATTCTCAAGTGAGATGATTTTTGTTTCGAAAAAAAATGAAAATAT
57 AGGAAAA-CT-GTCTCAAGCAAGACGAAATTGGTTT-------TAA-GAAAA-AC
* * * * * * * *
4898 ATTCTCAAGTGAGATGATTTTTTGTTTCAATGCGAAAAAATATCGAAAAATTTTGTTTT-AAGGG
1 AATCTCAAGTGAAAT-AATTTTTGTTTCAAT--GAAACAATTTC--TAAATTTTTTTTTCAAGGA
* ** * * * **
4962 AAACTGTCTTAAGTGAGACAAAATTGGTTTTGACAAAATT
61 AAACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * * * * *
5002 AATCTCAAATGCGATTAATTTTTGTTTGGAGTCAAACAAATTGTGAAATTTATTTTTCAAGGGAA
1 AATCTCAAGTG-AAATAATTTTTGTTT-CAATGAAACAATTTCT-AAATTTTTTTTTCAA-GGAA
* ** *
5067 AACTGTCTCAAGCGAGAAAAAATTGGTTTTTAAAAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGG-TTTTAAGAAAAAC
* * * * * * *
5107 AATCTAAAGTGAGATGAAATTTTGTTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCAA-GGAA
* * * *
5172 AACTGTCTCAAGCGAGATGAAATTTGTTTTAA-AAAAAG
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * *
5210 AATCTCCAGTG--ATAATTTTTTTCTTGAGTGAAACAATTT-TAAAATTTTTGTTTCAA-GATAA
1 AATCTCAAGTGAAATAATTTTTGT-TTCAATGAAACAATTTCT-AAATTTTTTTTTCAAGGA-AA
* * *
5271 ACTATCTCAAG-AGAGACGAAATTGATTTTAAGAAAAAAT
63 ACTGTCTCAAGCA-AGACGAAATTGGTTTTAAG-AAAAAC
* * * * ** * *
5310 AATATCAAATGAGATAATTTTTTGTTTCATATCAAACAAAATCTAAAATTTTTATTTCAAGGGAA
1 AATCTCAAGTGAAATAA-TTTTTGTTTCA-ATGAAACAATTTCT-AAATTTTTTTTTCAAGGAAA
* * * * * * *
5375 ATTGTTTGAGGCAAAACGAAATTAGTTTTAAGAGAAAC
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
** *
5413 AATCTCAAGTGATTTGAATTTTTGTTTCAAGTGAAACAATTTCTAAATTTTTTGTTTCAAGAAGA
1 AATCTCAAGTGAAAT-AATTTTTGTTTCAA-TGAAACAATTTCTAAATTTTTT-TTTCAAGGA-A
* * * * * * *
5478 AATTGTTTGAGGCAAGATGAATTTGGTTTTAAGAAAAAG
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * *
5517 TATTTCAAGTGATATGAAATTTTGTTTCATGTGAAACAATTTCTAAAATTTGTTTTTT-AAGGGA
1 AATCTCAAGTGAAAT-AATTTTTGTTTCA-ATGAAACAATTTCT-AAATTT-TTTTTTCAAGGAA
* * ** *
5581 AACTGTATTAAGTGAGATGAAATTGGTTTTAAGAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * *
5620 AATCTC-AGAGAAATAAATTTTTGTTTCGAGTGAAGCAATTTCTAAAATTTTTGTTTGAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCAAGGAAA
*
5684 ACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAAC
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * *
5722 AATCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTGAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCAA-GGAA
* ** *
5787 AACTGTGTCAAGTGAGA--AAATTGATTTTAAGAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* *** *
5824 AATCTCAAGT-AAGATGAATTTTTGTTTCTAGTG-AA-AA----T---TTGGGTTTT-AAGGGAA
1 AATCTCAAGTGAA-AT-AATTTTTGTTTC-AATGAAACAATTTCTAAATTTTTTTTTCAAGGAAA
* * ** *
5878 ATTGTCTCATAG-GAGACG-AATTGAATTTAAGAAAATC
63 ACTGTCTCA-AGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * * *
5915 AATCTCAAGTGAGATGAAATTTT-TTTCGAGTGAAACCATTTCTAAAATTTGTGTTTAAAGCG-A
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCAAG-GAA
* * * * *
5978 AATTGTTTTAAGCGAGATGAAATTGGTTTTAAGAAAAAC
62 AACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * ***
6017 AATCTAAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTT-AGAGGGA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAATTTCT-AAATTTTTTTTTCA-A-GGA
* * * * * * *
6081 AAATTATCTCAGGCGAGATGAAAATGGTTCTAAGAAAAAC
61 AAACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * * * * *
6121 ATTCTCAAGTGAGATGAATTTTT-TTT-AAGTGAAATATTTTCGAAAATTTTTGTTTCAAGGGAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTCAA-TGAAACAATTTC-TAAATTTTTTTTTCAAGGAAA
* * * * * * *
6184 ATTGTCTCAAGCGAGACAAAATCGGTTATAA-AACAAT
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
* * * *** * * *
6221 ATTCTCAAGTGAGATAAATTTTTGTTTCGAGTGAAACAATATGAAAAAATTTTGTTTGAAGGAAA
1 AATCTCAAGTGAAAT-AATTTTTGTTTC-AATGAAACAAT-TTCTAAATTTTTTTTTCAAGGAAA
* ** * *
6286 ACTATCTCAAGTGAGACGAAATTGATTTTAACAAAAA
63 ACTGTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAA
6323 TAATTTTTAT
Statistics
Matches: 1828, Mismatches: 369, Indels: 295
0.73 0.15 0.12
Matches are distributed among these distances:
86 2 0.00
88 6 0.00
89 1 0.00
90 29 0.02
91 60 0.03
92 23 0.01
93 6 0.00
94 3 0.00
95 1 0.00
96 4 0.00
97 2 0.00
98 77 0.04
99 35 0.02
100 82 0.04
101 174 0.10
102 353 0.19
103 405 0.22
104 389 0.21
105 108 0.06
106 4 0.00
110 2 0.00
111 3 0.00
112 7 0.00
113 18 0.01
114 1 0.00
115 5 0.00
116 4 0.00
117 1 0.00
118 1 0.00
119 13 0.01
122 6 0.00
123 3 0.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (100 bp):
AATCTCAAGTGAAATAATTTTTGTTTCAATGAAACAATTTCTAAATTTTTTTTTCAAGGAAAACT
GTCTCAAGCAAGACGAAATTGGTTTTAAGAAAAAC
Found at i:4594 original size:308 final size:305
Alignment explanation
Indices: 3908--4600 Score: 758
Period size: 308 Copynumber: 2.3 Consensus size: 305
3898 GTTTTGAGAG
* * * * * **
3908 AAACAATTTTTTAAATTTGCGTTTCAAGGGAAAACTGTCTCAAGTGAGATGAAATTTTTTTTAAG
1 AAACAATTTCTAAAATTTGCGTTTCAAGGGAAATCTGTCTCAAGCGAGACGAAATTAGTTTTAAG
* * * *
3973 AAAAAGAATCTAAAGTGTGAATTTTTTTCTTAGTGAAACAATTTCAAAATTTTTGTTTCAAGGAA
66 AAAAACAATCTCAAGTGTAAATTTTTTTCTAAGTGAAACAATTTCAAAATTTTTGTTTCAAGGAA
* * * * *
4038 AACTATCTCAAGAGAGACGAAATTGATTTTAAGAAAAATAATATTAAGTGAGATAATTTTTTGTT
131 AACTATCTCAAGAGAGACGAAATTGAGTTTAAGAAAAACAATATTAAGTAAAATAAATTTTTGTT
* * * *
4103 TCATATGAAACAATTTCTAGAATTTTTATTTAAGGGGAAACTGTCTCAAGTGAGACGAAATTGGC
196 TCATATGAAACAATTTCTAAAATTTGTATTTAAGGGGAAACTGTCTCAAGCGAGACAAAATTGGC
* ** *
4168 TTTAAGAAAAACAATCTCAAGTGATTTGAATTTTTGTTTCGAATG
261 TTTAAGAAAAACAATCTCAAGTGATATGAATAATTGTTTCGAATA
* ** * ** * * * * *
4213 AAACAATTTCTAAATTTTTTGTTTTAAGAAAAAAT-TGTCTGAGGCAAGACGAATTTGGTTTTAA
1 AAACAATTTCTAAAATTTGCGTTTCAAG-GGAAATCTGTCTCAAGCGAGACGAAATTAGTTTTAA
*
4277 GAAAAACAATCTCTAGTGAGATTAAATTTTGTTTC-AAGTGAAACAATTTCTAAAATTTGTT-TT
65 GAAAAACAATCTCAAGT--G--TAAATTTT-TTTCTAAGTGAAACAATTTC-AAAATTT-TTGTT
* * * *
4340 TCAAGGAAAATTGTCTCAAGCA-AGACGAAATTG-GTTTAA-AAAAACAATCTTAGGTAAAATAA
123 TCAAGGAAAACTATCTCAAG-AGAGACGAAATTGAGTTTAAGAAAAACAATATTAAGTAAAATAA
* *
4402 ATTTTTGTTTCA-AGTGAAACAGTTTCTAAAATTTGTGTTTCAA-GGGAAACTGTCTCAAGCGAG
187 ATTTTTGTTTCATA-TGAAACAATTTCTAAAATTTGTATTT-AAGGGGAAACTGTCTCAAGCGAG
* * **
4465 ACAAAATTGGTTTTACGAAAAACAATCTCAAGTG-TGATGAATAATTGTTTCGGGTA
250 ACAAAATTGGCTTTAAGAAAAACAATCTCAAGTGAT-ATGAATAATTGTTTCGAATA
* * *
4521 AAACAATTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGAGA-GAAAATTAGTTTAAA
1 AAACAATTTCTAAAATTTGCGTTTCAAGGGAAATCTGTCTCAAGCGAGACG-AAATTAGTTTTAA
4585 GAAAAACAATCTCAAG
65 GAAAAACAATCTCAAG
4601 CGAGGGAAAT
Statistics
Matches: 314, Mismatches: 60, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
305 57 0.18
306 3 0.01
307 8 0.03
308 173 0.55
309 28 0.09
310 42 0.13
311 3 0.01
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (305 bp):
AAACAATTTCTAAAATTTGCGTTTCAAGGGAAATCTGTCTCAAGCGAGACGAAATTAGTTTTAAG
AAAAACAATCTCAAGTGTAAATTTTTTTCTAAGTGAAACAATTTCAAAATTTTTGTTTCAAGGAA
AACTATCTCAAGAGAGACGAAATTGAGTTTAAGAAAAACAATATTAAGTAAAATAAATTTTTGTT
TCATATGAAACAATTTCTAAAATTTGTATTTAAGGGGAAACTGTCTCAAGCGAGACAAAATTGGC
TTTAAGAAAAACAATCTCAAGTGATATGAATAATTGTTTCGAATA
Found at i:4631 original size:55 final size:56
Alignment explanation
Indices: 4547--4655 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 56
4537 TTGCATTTCA
*
4547 AGGGAAATCTGTGTCAAGCGAGAGAAAATT-AGTTTAAAGAAAAACAATCTCAAGCG
1 AGGGAAATCTGTCTCAAGCGAGAGAAAATTGA-TTTAAAGAAAAACAATCTCAAGCG
* * *
4603 AGGGAAAT-TGTCTCATGCGAGACG-AAATTGATTTTAAGAAAATCAATCTCAAG
1 AGGGAAATCTGTCTCAAGCGAGA-GAAAATTGATTTAAAGAAAAACAATCTCAAG
4656 TGAGATGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
55 37 0.79
56 10 0.21
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (56 bp):
AGGGAAATCTGTCTCAAGCGAGAGAAAATTGATTTAAAGAAAAACAATCTCAAGCG
Found at i:4656 original size:159 final size:158
Alignment explanation
Indices: 4444--4738 Score: 405
Period size: 159 Copynumber: 1.9 Consensus size: 158
4434 TTGTGTTTCA
* * *
4444 AGGGAAACTGTCTCAAGCGAGACAAAATTGGTTTTACGAAAAACAATCTCAAGTGTGATG-AATA
1 AGGGAAACTGTCTCAAGCGAGACAAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAAAT-
* * * * *
4508 ATTGTTTCGGGTAAAACAATTTCTAAAATTTGCATTTCAAGGGAAATCTGTGTCAAGCGAGA-GA
65 ATTCTTTCGAGTAAAACAATTTCTAAAATTTGCATTTCAAGAGAAAT-TGTCTCAAGCGAAACGA
4572 AAATTAGTTTAAAGAAAAACAATCTCAAGCG
129 AAA-TAGTTTAAAGAAAAACAATCTCAAGCG
* * * * *
4603 AGGGAAATTGTCTCATGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAATT
1 AGGGAAACTGTCTCAAGCGAGACAAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAAATA
* **
4668 TTCTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGAGAAATTGTCTCAAGCGAAACGAAA
66 TTCTTTCGAGTAAAACAATTTCTAAAATTTGCATTTCAAGAGAAATTGTCTCAAGCGAAACGAAA
4733 ATAGTT
131 ATAGTT
4739 CTAATAAAAA
Statistics
Matches: 118, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
158 17 0.14
159 98 0.83
160 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (158 bp):
AGGGAAACTGTCTCAAGCGAGACAAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAAATA
TTCTTTCGAGTAAAACAATTTCTAAAATTTGCATTTCAAGAGAAATTGTCTCAAGCGAAACGAAA
ATAGTTTAAAGAAAAACAATCTCAAGCG
Found at i:4820 original size:102 final size:104
Alignment explanation
Indices: 4606--4834 Score: 286
Period size: 102 Copynumber: 2.2 Consensus size: 104
4596 TCAAGCGAGG
* * * * *
4606 GAAATTGTCTCATGCGAGACG-AAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAATTTT
1 GAAATTGTCTCAAGCGAGACGAAAATAGATTCTAAGAAAAACAATCTAAAGTGAGATGAAATTTT
* * *
4670 CTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGA
66 CTTTCAAGTGAAACAATTTCGAAAATTTGTGTGTCAAGA
* * *
4709 GAAATTGTCTCAAGCGAAACGAAAATAG-TTCTAATAAAAACATTCTAAAGTGAGATG-AATATT
1 GAAATTGTCTCAAGCGAGACGAAAATAGATTCTAAGAAAAACAATCTAAAGTGAGATGAAAT-TT
* * *
4772 T-TTTCAAGTGAAATATTTTCGAAAATTTTTGTGTCAAGA
65 TCTTTCAAGTGAAACAATTTCGAAAATTTGTGTGTCAAGA
*
4811 GAAATTGTCTCAAGTGAGACGAAA
1 GAAATTGTCTCAAGCGAGACGAAA
4835 TTGGTTGAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
102 57 0.53
103 46 0.43
104 5 0.05
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.32
Consensus pattern (104 bp):
GAAATTGTCTCAAGCGAGACGAAAATAGATTCTAAGAAAAACAATCTAAAGTGAGATGAAATTTT
CTTTCAAGTGAAACAATTTCGAAAATTTGTGTGTCAAGA
Found at i:5000 original size:150 final size:148
Alignment explanation
Indices: 4750--5028 Score: 326
Period size: 150 Copynumber: 1.9 Consensus size: 148
4740 TAATAAAAAC
* * * * *
4750 ATTCTAAAGTGAGATGAATATTTTTTCAAGTGAAATATTTTCGAAAATTTTTGTGTCAAGAGAAA
1 ATTCTAAAGTGAGATGAATATTTTTTCAAGCGAAAAAATATCGAAAAATTTTGTGTCAAGAGAAA
* * * * *
4815 TTGTCTCAAGTGAGACGAAATTGGTTGAAAAAAAATATATTCTCAAGTGAGA-TGATTTTTGTTT
66 CTGTCTCAAGTGAGACAAAATTGGTTGAAAAAAAAT-TAATCTCAAATGAGATTAATTTTTGTTT
4879 CGAAAAAAAATGAAAATAT
130 CGAAAAAAAATGAAAATAT
* * * * * *
4898 ATTCTCAAGTGAGATGATTTTTTGTTTCAATGCGAAAAAATATCGAAAAATTTTGTTTTAAGGGA
1 ATTCTAAAGTGAGATGAATATTT-TTTCAA-GCGAAAAAATATCGAAAAATTTTGTGTCAAGAGA
* *** * *
4963 AACTGTCTTAAGTGAGACAAAATTGGTTTTGACAAAATTAATCTCAAATGCGATTAATTTTTGTT
64 AACTGTCTCAAGTGAGACAAAATTGGTTGAAAAAAAATTAATCTCAAATGAGATTAATTTTTGTT
5028 T
129 T
5029 GGAGTCAAAC
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
148 20 0.19
149 18 0.17
150 68 0.64
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (148 bp):
ATTCTAAAGTGAGATGAATATTTTTTCAAGCGAAAAAATATCGAAAAATTTTGTGTCAAGAGAAA
CTGTCTCAAGTGAGACAAAATTGGTTGAAAAAAAATTAATCTCAAATGAGATTAATTTTTGTTTC
GAAAAAAAATGAAAATAT
Found at i:5612 original size:103 final size:102
Alignment explanation
Indices: 4900--6322 Score: 1094
Period size: 102 Copynumber: 14.0 Consensus size: 102
4890 GAAAATATAT
** * * * * *
4900 TCTCAAGTGAGATGATTTTTTGTTTCAATGCGAAAAAATATCGAAAAATTTTGTTTT-AAGGGAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGA-GTGAAACAATTTC-TAAAATTTT-TTTTCAAGGGAA
* * * * * **
4964 ACTGTCTTAAGTGAGACAAAATTGGTTTTGACAAAATTAA
63 ACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * * * * * * * *
5004 TCTCAAATGCGATTAATTTTTGTTTGGAGTCAAACAAATTGTGAAATTTATTTTTCAAGGGAAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT-TTTTTCAAGGG-AAA
** *
5069 CTGTCTCAAGCGAGAAAAAATTGGTTTTTAAAAAAAACAA
64 CTGTCTCAAGCGAGACGAAATTGG-TTTTAAGAAAAACAA
* * *
5109 TCTAAAGTGAGATGAAATTTTGTTTCGAGTGAGACAATTTCTAAAATTTGTGTTTCAAGGGAAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT-TTTTTCAAGGG-AAA
* * *
5174 CTGTCTCAAGCGAGATGAAATTTGTTTTAA-AAAAAGAA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* **
5212 TCTCCAGT--GAT--AATTTT-TTTCTTGAGTGAAACAATTT-TAAAATTTTTGTTTCAAGATAA
1 TCTCAAGTGAGATGAAATTTTGTTTC--GAGTGAAACAATTTCTAAAATTTTT-TTTCAAGGGAA
* * * *
5271 ACTATCTCAAGAGAGACGAAATTGATTTTAAGAAAAAATAA
63 ACTGTCTCAAGCGAGACGAAATTGGTTTTAAG-AAAAACAA
* * * * * **
5312 TATCAAATGAGAT-AATTTTTTGTTTC-ATATCAAACAAAATCTAAAATTTTTATTTCAAGGGAA
1 TCTCAAGTGAGATGAA-ATTTTGTTTCGA-GTGAAACAATTTCTAAAATTTTT-TTTCAAGGGAA
* * * * * * * *
5375 ATTGTTTGAGGCAAAACGAAATTAGTTTTAAGAGAAACAA
63 ACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
** * * * *
5415 TCTCAAGTGATTTGAATTTTTGTTTCAAGTGAAACAATTTCTAAATTTTTTGTTTCAAGAAGAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTTT-TTTCAAG-GGAAA
* * * * * * * **
5480 TTGTTTGAGGCAAGATGAATTTGGTTTTAAGAAAAAGTA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * *
5519 TTTCAAGTGATATGAAATTTTGTTTC-ATGTGAAACAATTTCTAAAATTTGTTTTTTAAGGGAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGA-GTGAAACAATTTCTAAAATTT-TTTTTCAAGGGAAA
* * * *
5583 CTGTATTAAGTGAGATGAAATTGGTTTTAAGAAAAACAA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * * *
5622 TCTC-AGAGAAAT-AAATTTTTGTTTCGAGTGAAGCAATTTCTAAAATTTTTGTTTGAAGGGAAA
1 TCTCAAGTGAGATGAAA-TTTTGTTTCGAGTGAAACAATTTCTAAAATTTTT-TTTCAAGGGAAA
5685 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * * *
5724 TCTCAAGTGAGATGAATTTTTGTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTGAAGGGAAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT-TTTTTCAAGGG-AAA
* * *
5789 CTGTGTCAAGTGAGA--AAATTGATTTTAAGAAAAACAA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * * *** *
5826 TCTCAAGTAAGATGAATTTTTGTTTCTAGTG-AA-AA--T-T----TGGGTTTT-AAGGGAAATT
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTTTTTTCAAGGGAAACT
** *
5881 GTCTCATAG-GAGACG-AATTGAATTTAAGAAAATCAA
66 GTCTCA-AGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * * * *
5917 TCTCAAGTGAGATGAAATTTT-TTTCGAGTGAAACCATTTCTAAAATTTGTGTTTAAAGCGAAAT
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT-TTTTTCAAGGGAAAC
* * *
5981 TGTTTTAAGCGAGATGAAATTGGTTTTAAGAAAAACAA
65 TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* * **
6019 TCTAAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTGAGTTT-AGAGGGAAA
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTT-TTTTTCA-AGGG-AA
* * * * * * *
6083 ATTATCTCAGGCGAGATGAAAATGGTTCTAAGAAAAACAT
63 ACTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
** * * * *
6123 TCTCAAGTGAGATG-AATTTT-TTTTAAGTGAAATATTTTCGAAAATTTTTGTTTCAAGGGAAAT
1 TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTTT-TTTCAAGGGAAAC
* * * * * *
6186 TGTCTCAAGCGAGACAAAATCGGTTATAA-AACAATAT
65 TGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
*** * * *
6223 TCTCAAGTGAGAT-AAATTTTTGTTTCGAGTGAAACAATATGAAAAAATTTTGTTTGAAGGAAAA
1 TCTCAAGTGAGATGAAA-TTTTGTTTCGAGTGAAACAAT-TTCTAAAATTTTTTTTCAAGGGAAA
* * * *
6287 CTATCTCAAGTGAGACGAAATTGATTTTAACAAAAA
64 CTGTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAA
6323 TAATTTTTAT
Statistics
Matches: 1067, Mismatches: 198, Indels: 109
0.78 0.14 0.08
Matches are distributed among these distances:
90 21 0.02
91 47 0.04
92 4 0.00
93 1 0.00
94 1 0.00
95 1 0.00
97 1 0.00
98 34 0.03
99 22 0.02
100 53 0.05
101 58 0.05
102 260 0.24
103 222 0.21
104 252 0.24
105 90 0.08
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (102 bp):
TCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAACAATTTCTAAAATTTTTTTTCAAGGGAAACT
GTCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
Found at i:5921 original size:91 final size:90
Alignment explanation
Indices: 5766--5949 Score: 237
Period size: 91 Copynumber: 2.0 Consensus size: 90
5756 AACAATTTCT
* * *
5766 AAAATTTGTGTTTGAAGGGAAAACTGTGTCAAGTGAGAAAATTGATTTTAAGAAAAACAATCTCA
1 AAAATTTGGGTTTGAAGGGAAAACTGTCTCAAGTGAGAAAATTGAATTTAAGAAAAACAATCTCA
* *
5831 AGTAAGATGAATTTTTGTTTCTAGTG
66 AGTAAGATGAAATTTT-TTTCGAGTG
* * * *
5857 AAAATTTGGGTTTTAAGGG-AAATTGTCTCATAG-GAGACGAATTGAATTTAAGAAAATCAATCT
1 AAAATTTGGGTTTGAAGGGAAAACTGTCTCA-AGTGAGA-AAATTGAATTTAAGAAAAACAATCT
*
5920 CAAGTGAGATGAAATTTTTTTCGAGTG
64 CAAGTAAGATGAAATTTTTTTCGAGTG
5947 AAA
1 AAA
5950 CCATTTCTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
90 24 0.30
91 57 0.70
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (90 bp):
AAAATTTGGGTTTGAAGGGAAAACTGTCTCAAGTGAGAAAATTGAATTTAAGAAAAACAATCTCA
AGTAAGATGAAATTTTTTTCGAGTG
Found at i:6399 original size:88 final size:87
Alignment explanation
Indices: 6237--6410 Score: 208
Period size: 88 Copynumber: 2.0 Consensus size: 87
6227 AAGTGAGATA
* * * *
6237 AATTTTTGTTTCGAGTGAAACAATATGAAAAAATTTTGTTTGAAGGAAAACTATCTCAAGTGAGA
1 AATTTTTATTTCGAGTGAAACAATATGAAAAAATTTAGTTTCAAGGAAAACTATCTCAAGCGAGA
* *
6302 CGAAATTGATTTTAACAAAAAT
66 AGAAATTGATTATAACAAAAAT
** * *
6324 AATTTTTATTTCGAGTGAAACAA-ATTG-TGAAATTTGAGTTTCAAGGGAAAATTGTCTCAAGCG
1 AATTTTTATTTCGAGTGAAACAATA-TGAAAAAATTT-AGTTTCAA-GGAAAACTATCTCAAGCG
*
6387 AGAAGAAATTGATTATAAGAAAAA
63 AGAAGAAATTGATTATAACAAAAA
6411 CATTCTTAAG
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
86 7 0.10
87 30 0.41
88 36 0.49
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (87 bp):
AATTTTTATTTCGAGTGAAACAATATGAAAAAATTTAGTTTCAAGGAAAACTATCTCAAGCGAGA
AGAAATTGATTATAACAAAAAT
Found at i:7217 original size:24 final size:24
Alignment explanation
Indices: 7190--7261 Score: 108
Period size: 24 Copynumber: 2.9 Consensus size: 24
7180 CTATTCTTTC
7190 GCTTCAATTGAACTCAAATTTTAG
1 GCTTCAATTGAACTCAAATTTTAG
*
7214 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAACTCAAATTTTAG
*
7238 GCTTCAATCGAACTTCTAAATTTT
1 GCTTCAATTGAAC-TC-AAATTTT
7262 TTTTTGAGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 34 0.79
25 2 0.05
26 7 0.16
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (24 bp):
GCTTCAATTGAACTCAAATTTTAG
Found at i:12097 original size:22 final size:22
Alignment explanation
Indices: 12070--12134 Score: 103
Period size: 22 Copynumber: 3.0 Consensus size: 22
12060 AACGGTCAAC
*
12070 GGTCAACGGTCGGGTCGGTTCG
1 GGTCAACGGTCGGGTCGGGTCG
12092 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
* *
12114 GGTCAACGATCGGGTTGGGTC
1 GGTCAACGGTCGGGTCGGGTC
12135 AGACCGGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.11, C:0.22, G:0.46, T:0.22
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:18665 original size:14 final size:14
Alignment explanation
Indices: 18646--18680 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
18636 GTCAAAGAAA
18646 GTCAACGATCAACG
1 GTCAACGATCAACG
18660 GTCAACGATCAACG
1 GTCAACGATCAACG
18674 GTCAACG
1 GTCAACG
18681 GTCGGGTCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.34, C:0.29, G:0.23, T:0.14
Consensus pattern (14 bp):
GTCAACGATCAACG
Found at i:18681 original size:7 final size:7
Alignment explanation
Indices: 18646--18683 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
18636 GTCAAAGAAA
18646 GTCAACG
1 GTCAACG
*
18653 ATCAACG
1 GTCAACG
18660 GTCAACG
1 GTCAACG
*
18667 ATCAACG
1 GTCAACG
18674 GTCAACG
1 GTCAACG
18681 GTC
1 GTC
18684 GGGTCGGGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.32, C:0.29, G:0.24, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:18735 original size:9 final size:9
Alignment explanation
Indices: 18717--18796 Score: 61
Period size: 9 Copynumber: 8.3 Consensus size: 9
18707 GGTCGGGTCG
*
18717 GGTCAGACC
1 GGTCAAACC
18726 GGTCAAACC
1 GGTCAAACC
*
18735 GGTTCGAACC
1 GG-TCAAACC
* *
18745 GATTGAAACC
1 G-GTCAAACC
18755 GGTCAAACC
1 GGTCAAACC
18764 GGTCAGAACC
1 GGTCA-AACC
*
18774 GGTTGAAAACC
1 GG-T-CAAACC
*
18785 GGTTAAACC
1 GGTCAAACC
18794 GGT
1 GGT
18797 TTCCAGCAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
9 29 0.51
10 20 0.35
11 7 0.12
12 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.28, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:18757 original size:29 final size:31
Alignment explanation
Indices: 18723--18797 Score: 111
Period size: 29 Copynumber: 2.5 Consensus size: 31
18713 GTCGGGTCAG
18723 ACCGGTCAAACCGGTTC-GAACCGATTG-AA
1 ACCGGTCAAACCGGTTCAGAACCGATTGAAA
*
18752 ACCGGTCAAACCGG-TCAGAACCGGTTGAAA
1 ACCGGTCAAACCGGTTCAGAACCGATTGAAA
*
18782 ACCGGTTAAACCGGTT
1 ACCGGTCAAACCGGTT
18798 TCCAGCAGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 2 0.05
29 23 0.56
30 15 0.37
31 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.25, T:0.17
Consensus pattern (31 bp):
ACCGGTCAAACCGGTTCAGAACCGATTGAAA
Found at i:18795 original size:20 final size:21
Alignment explanation
Indices: 18759--18797 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
18749 GAAACCGGTC
18759 AAACCGGTCAGAACCGGTTGA
1 AAACCGGTCAGAACCGGTTGA
*
18780 AAACCGGTTA-AACCGGTT
1 AAACCGGTCAGAACCGGTT
18798 TCCAGCAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (21 bp):
AAACCGGTCAGAACCGGTTGA
Found at i:20356 original size:12 final size:12
Alignment explanation
Indices: 20341--20397 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
20331 GATACATTAC
*
20341 CTGAATTCTGTT
1 CTGAATTCTGAT
*
20353 CTGATTTCTGAT
1 CTGAATTCTGAT
* *
20365 CTGGATTCTGTT
1 CTGAATTCTGAT
20377 CT-AATATCTGAT
1 CTGAAT-TCTGAT
*
20389 CTAAATTCT
1 CTGAATTCT
20398 ATTTTGATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
11 2 0.06
12 31 0.86
13 3 0.08
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (12 bp):
CTGAATTCTGAT
Found at i:20372 original size:24 final size:24
Alignment explanation
Indices: 20344--20408 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
20334 ACATTACCTG
*
20344 AATTCTGTTCTGATTTCTGATCTG
1 AATTCTGTTCTGATTTCTGATCTA
* * *
20368 GATTCTGTTCTAATATCTGATCTA
1 AATTCTGTTCTGATTTCTGATCTA
* *
20392 AATTCTATTTTGATTTC
1 AATTCTGTTCTGATTTC
20409 AGATATCTCC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (24 bp):
AATTCTGTTCTGATTTCTGATCTA
Found at i:25491 original size:48 final size:49
Alignment explanation
Indices: 25420--25526 Score: 155
Period size: 48 Copynumber: 2.2 Consensus size: 49
25410 ATATTTTATC
* *
25420 TGATTTCTGA-CTTGAATTCTGTTATGATATATTACCTGAATTCTGTTT
1 TGATTTCTGATCTTGAATTCTGTTATGATATATGACCTGAATTATGTTT
* * *
25468 TGATTTCTGATC-TGGATTCTGTTATGATATCTGATCTGAATTATGTTT
1 TGATTTCTGATCTTGAATTCTGTTATGATATATGACCTGAATTATGTTT
25516 TGATTTCTGAT
1 TGATTTCTGAT
25527 ATCTCCATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.21, C:0.11, G:0.17, T:0.50
Consensus pattern (49 bp):
TGATTTCTGATCTTGAATTCTGTTATGATATATGACCTGAATTATGTTT
Found at i:25524 original size:24 final size:24
Alignment explanation
Indices: 25420--25526 Score: 117
Period size: 24 Copynumber: 4.5 Consensus size: 24
25410 ATATTTTATC
25420 TGATTTCTGA-CTTGAATTCTGTTA
1 TGATTTCTGATC-TGAATTCTGTTA
* * * * *
25444 TGATATATTACCTGAATTCTGTTT
1 TGATTTCTGATCTGAATTCTGTTA
*
25468 TGATTTCTGATCTGGATTCTGTTA
1 TGATTTCTGATCTGAATTCTGTTA
* * *
25492 TGATATCTGATCTGAATTATGTTT
1 TGATTTCTGATCTGAATTCTGTTA
25516 TGATTTCTGAT
1 TGATTTCTGAT
25527 ATCTCCATTT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
24 66 0.99
25 1 0.01
ACGTcount: A:0.21, C:0.11, G:0.17, T:0.50
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTCTGTTA
Found at i:26776 original size:3 final size:3
Alignment explanation
Indices: 26768--26795 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
26758 TATATGAATC
26768 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
26796 ATATAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:30564 original size:24 final size:24
Alignment explanation
Indices: 30537--30669 Score: 126
Period size: 24 Copynumber: 5.5 Consensus size: 24
30527 AAATATTTTA
*
30537 TCTGATTTCTGA-CTTGAATTATGT
1 TCTGATTTCTGATC-TGAATTCTGT
* * *
30561 TCTGA-TACATTACCTGAATTCTGT
1 TCTGATTTC-TGATCTGAATTCTGT
* * *
30585 TCTGATTTTTTATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
30609 TCTGATATCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
*
30633 TCTGATATCTGATCTGAATTCTGT
1 TCTGATTTCTGATCTGAATTCTGT
* *
30657 TTTGATTTTTGAT
1 TCTGATTTCTGAT
30670 ATCTCCGTTT
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
23 2 0.02
24 88 0.96
25 2 0.02
ACGTcount: A:0.19, C:0.14, G:0.17, T:0.50
Consensus pattern (24 bp):
TCTGATTTCTGATCTGAATTCTGT
Found at i:30589 original size:12 final size:11
Alignment explanation
Indices: 30578--30663 Score: 73
Period size: 12 Copynumber: 7.3 Consensus size: 11
30568 CATTACCTGA
30578 ATTCTGTTCTG
1 ATTCTGTTCTG
* *
30589 ATTTTTTATCTGG
1 ATTCTGT-TCT-G
30602 ATTCTGTTCTG
1 ATTCTGTTCTG
*
30613 ATATCTGATCTGG
1 AT-TCTGTTCT-G
30626 ATTCTGTTCTG
1 ATTCTGTTCTG
*
30637 ATATCTGATCTG
1 AT-TCTGTTCTG
*
30649 AATTCTGTTTTG
1 -ATTCTGTTCTG
30661 ATT
1 ATT
30664 TTTGATATCT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
11 14 0.23
12 35 0.58
13 11 0.18
ACGTcount: A:0.16, C:0.14, G:0.17, T:0.52
Consensus pattern (11 bp):
ATTCTGTTCTG
Found at i:30592 original size:48 final size:48
Alignment explanation
Indices: 30537--30662 Score: 139
Period size: 48 Copynumber: 2.6 Consensus size: 48
30527 AAATATTTTA
* *
30537 TCTGATTTCTGA-CTTGAATTATGTTCTGATA-CATTACCTGAATTCTGT
1 TCTGATTTCTGATC-TGAATTCTGTTCTGATATC-TGACCTGAATTCTGT
* * * * *
30585 TCTGATTTTTTATCTGGATTCTGTTCTGATATCTGATCTGGATTCTGT
1 TCTGATTTCTGATCTGAATTCTGTTCTGATATCTGACCTGAATTCTGT
* *
30633 TCTGATATCTGATCTGAATTCTGTTTTGAT
1 TCTGATTTCTGATCTGAATTCTGTTCTGAT
30663 TTTTGATATC
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 62 0.97
49 2 0.03
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (48 bp):
TCTGATTTCTGATCTGAATTCTGTTCTGATATCTGACCTGAATTCTGT
Found at i:31654 original size:103 final size:100
Alignment explanation
Indices: 31408--31956 Score: 521
Period size: 103 Copynumber: 5.3 Consensus size: 100
31398 GGGGGTTATA
* * * * * *
31408 GAAACAATTTCTAACATTTGTGTTTCAACGGAAAGCTGTCTCAAGCGAGACGAAAGTAGTTATAA
1 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTCTCTCAAGCGAGACGAAATTGGTTTTAA
* * * * *
31473 GAAAAAGAATCTAAAGTAAGATAAATATTTTTGAGT
65 GAAAAACAATCTCAAGTGAGATAATTTTTTTTGAGT
* * * *
31509 GAAACAATGTC-AAAATTTTTGTTTCAAGGGAAACTGC-CTCAAGCGAGGCAAAATTGGTTTTAA
1 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACT-CTCTCAAGCGAGACGAAATTGGTTTTAA
* * *
31572 GAAAAATAATCTCAAGCGAGATATATTTTTGTTTTACGT
65 GAAAAACAATCTCAAGTGAGATA-ATTTTT-TTTGA-GT
* * ** * *
31611 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACCCTCTCAAGCAAGAAAAAACTGGTTTTATG
1 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTCTCTCAAGCGAGACGAAATTGGTTTTAAG
** *
31676 AAAAACAATCTCAAGTGATTTGAATTTTTTTTCGACT
66 AAAAACAATCTCAAGTGAGAT-AATTTTTTTT-GAGT
* * * *
31713 GAAACTATTTCTAAACTTTGTGTTTCAAGAGAAAACAT-TCTCAGGCGAGACGAAATTGGTTTTA
1 GAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAAC-TCTCTCAAGCGAGACGAAATTGGTTTTA
* *
31777 AGAAAAAAAAATCCCAAGTGAGATGAATTTTCATTTTTGAGT
64 AG-AAAAACAATCTCAAGTGAGAT-AA-TTT--TTTTTGAGT
* * * * * *
31819 GAAACAATTTCTACAATTTGTATTTCAAGGGAAATTTTTTCAAGTGAGACGAAATTGGTTTTAAG
1 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTCTCTCAAGCGAGACGAAATTGGTTTTAAG
*
31884 AAAAACAATCTCAAGTGCA-ATAAATTTTTGTTTCAAGT
66 AAAAACAATCTCAAGTG-AGAT-AATTTTT-TTT-GAGT
* * *
31922 GAAACAATTTCTGAAATTTTTGTTTCAAGTGAAAC
1 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAC
31957 AATTTATGAA
Statistics
Matches: 365, Mismatches: 65, Indels: 34
0.79 0.14 0.07
Matches are distributed among these distances:
99 42 0.12
100 23 0.06
101 16 0.04
102 47 0.13
103 130 0.36
104 41 0.11
105 33 0.09
106 28 0.08
107 5 0.01
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (100 bp):
GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTCTCTCAAGCGAGACGAAATTGGTTTTAAG
AAAAACAATCTCAAGTGAGATAATTTTTTTTGAGT
Found at i:31839 original size:208 final size:207
Alignment explanation
Indices: 31408--31955 Score: 492
Period size: 208 Copynumber: 2.7 Consensus size: 207
31398 GGGGGTTATA
* * * ** * ** * * *
31408 GAAACAATTTCTAACATTTGTGTTTCAACGGAAAGCTGTCTCAAGCGAGACGAAAGTAGTTATAA
1 GAAACAATTTCTAAAATTTGTATTTCAAGGGAAA-CCCTCTCAAGCAAGAAAAAACTGGTTTTAA
* * * * * * * * *
31473 GAAAAAGAATCTAAAGT-AAGATAAA-TATT-TTT-GAGTGAAACAATGTC-AAAATTTTTGTTT
65 GAAAAACAATCTCAAGTGCA-ATAAATTTTTGTTTCAACTGAAACAATTTCTGAAATTTGTGTTT
* * * * * * *
31533 CAAG-GGAAAC-TGCCTCAAGCGAGGCAAAATTGGTTTTAAGAAAAATAATCTCAAGCGAGATAT
129 CAAGAGAAAACAT-TCTCAGGCGAGACGAAATTGGTTTTAAGAAAAAAAATCCCAAGCGAGATAT
31596 ATTTTTGTTTTACGT
193 ATTTTTGTTTTACGT
* *
31611 GAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACCCTCTCAAGCAAGAAAAAACTGGTTTTATG
1 GAAACAATTTCTAAAATTTGTATTTCAAGGGAAACCCTCTCAAGCAAGAAAAAACTGGTTTTAAG
* * * *
31676 AAAAACAATCTCAAGTG-ATTTGAATTTTT-TTTCGACTGAAACTATTTCT-AAACTTTGTGTTT
66 AAAAACAATCTCAAGTGCA-ATAAATTTTTGTTTCAACTGAAACAATTTCTGAAA-TTTGTGTTT
*
31738 CAAGAGAAAACATTCTCAGGCGAGACGAAATTGGTTTTAAGAAAAAAAAATCCCAAGTGAGATGA
129 CAAGAGAAAACATTCTCAGGCGAGACGAAATTGGTTTTAAG-AAAAAAAATCCCAAGCGAGAT-A
31803 -ATTTTCAT-TTTTGA-GT
192 TATTTT--TGTTTT-ACGT
* *** * ** ** *
31819 GAAACAATTTCTACAATTTGTATTTCAAGGGAAATTTTTTCAAGTGAGACGAAATTGGTTTTAAG
1 GAAACAATTTCTAAAATTTGTATTTCAAGGGAAACCCTCTCAAGCAAGAAAAAACTGGTTTTAAG
* *
31884 AAAAACAATCTCAAGTGCAATAAATTTTTGTTTCAAGTGAAACAATTTCTGAAATTTTTGTTTCA
66 AAAAACAATCTCAAGTGCAATAAATTTTTGTTTCAACTGAAACAATTTCTGAAATTTGTGTTTCA
*
31949 AGTGAAA
131 AGAGAAA
31956 CAATTTATGA
Statistics
Matches: 282, Mismatches: 48, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
202 40 0.14
203 38 0.13
204 15 0.05
205 12 0.04
206 29 0.10
207 24 0.09
208 85 0.30
209 36 0.13
210 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (207 bp):
GAAACAATTTCTAAAATTTGTATTTCAAGGGAAACCCTCTCAAGCAAGAAAAAACTGGTTTTAAG
AAAAACAATCTCAAGTGCAATAAATTTTTGTTTCAACTGAAACAATTTCTGAAATTTGTGTTTCA
AGAGAAAACATTCTCAGGCGAGACGAAATTGGTTTTAAGAAAAAAAATCCCAAGCGAGATATATT
TTTGTTTTACGT
Found at i:31941 original size:30 final size:30
Alignment explanation
Indices: 31905--31986 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
31895 CAAGTGCAAT
*
31905 AAATTTTTGTTTCAAGTGAAACAATTTCTG
1 AAATTTTTGTTTCAAGTGAAACAATTTATG
31935 AAATTTTTGTTTCAAGTGAAACAATTTATG
1 AAATTTTTGTTTCAAGTGAAACAATTTATG
* *
31965 AAATTTGTGTTTCAAGGGAAAC
1 AAATTTTTGTTTCAAGTGAAAC
31987 TGTCTCAAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (30 bp):
AAATTTTTGTTTCAAGTGAAACAATTTATG
Found at i:31970 original size:133 final size:131
Alignment explanation
Indices: 31816--32080 Score: 352
Period size: 133 Copynumber: 2.0 Consensus size: 131
31806 TTCATTTTTG
* * * * **
31816 AGTGAAACAATTTCTACAATTTGTATTTCAAGGGAAATTTTTTCAAGTGAGACGAAATTGGTTTT
1 AGTGAAACAATTTATACAATTTGTATTTCAAGGGAAACTGTCTCAAGCAAGACGAAATTGGTTTT
* * *
31881 AAGAAAAACAATCTCAAGTGCAATAAATTTTTGTTTCAAGTGAAACAATTTCTGAAATTTTTGTT
66 AAGAAAAACAAACTCAAGTG--ATAAATTTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTGTT
31946 TCA
129 TCA
* * *
31949 AGTGAAACAATTTATGA-AATTTGTGTTTCAAGGGAAACTGTCTCAAGCAATATGAAATTGGTTT
1 AGTGAAACAATTTAT-ACAATTTGTATTTCAAGGGAAACTGTCTCAAGCAAGACGAAATTGGTTT
* ** *
32013 TAAGAAAAACAAACTCAAGTGATGAATTTTTGTTTTGAGTGAAACAATTTGTAAAATTTGTGTTT
65 TAAGAAAAACAAACTCAAGTGATAAATTTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTGTTT
32078 CA
130 CA
32080 A
1 A
32081 TGGAAAAGTG
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 41 0.36
133 73 0.63
134 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (131 bp):
AGTGAAACAATTTATACAATTTGTATTTCAAGGGAAACTGTCTCAAGCAAGACGAAATTGGTTTT
AAGAAAAACAAACTCAAGTGATAAATTTTTGTTTCAAGTGAAACAATTTCTAAAATTTGTGTTTC
A
Found at i:32144 original size:235 final size:237
Alignment explanation
Indices: 31698--32190 Score: 572
Period size: 235 Copynumber: 2.1 Consensus size: 237
31688 AAGTGATTTG
* * * * * *
31698 AATTTTT-TTTCGACTGAAACTATTTCTAAACTTTGTGTTTCAAGAGAAAACATTCTCAGGCGAG
1 AATTTTTGTTTCAAGTGAAACAATTTATAAACTTTGTGTTTCAAGAGAAAACATTCTCAAGCAAG
31762 ACGAAATTGGTTTTAAGAAAAAAAAATCCCAAGTGAGATGAATTTTCATTTTTGAGTGAAACAAT
66 ACGAAATTGGTTTTAAGAAAAAAAAATCCCAAGT-AGATGAATTTT-ATTTTTGAGTGAAACAAT
* * * * ** *
31827 TTCTACAATTTGTATTTCAAGGGAAATTTTTTCAAGTGAGACGAAATTGGTTTTAAGAAAAACAA
129 TTCTAAAATTTGTATTTCAAGGAAAAGTGTAACAAGCGAGACGAAATTGGTTTTAAGAAAAACAA
* *
31892 TCTCAAGTGCAATAAATTTTTGTTTCAAGTGAAACAATTTCTGA
194 TCTCAAGTGCAATAAATTTTTGTTTCAAGTGAAACAAATTCTAA
*
31936 AATTTTTGTTTCAAGTGAAACAATTTATGAAA-TTTGTGTTTCAAG-GGAAAC-TGTCTCAAGCA
1 AATTTTTGTTTCAAGTGAAACAATTTAT-AAACTTTGTGTTTCAAGAGAAAACAT-TCTCAAGCA
* * * *
31998 ATATGAAATTGGTTTTAAGAAAAACAAA-CTCAAGT-GATGAATTTT-TGTTTTGAGTGAAACAA
64 AGACGAAATTGGTTTTAAGAAAAAAAAATCCCAAGTAGATGAATTTTAT-TTTTGAGTGAAACAA
* * * * *
32060 TTTGTAAAATTTGTGTTTCAATGGAAAAGTGTAACTAGCGCA-AGGAAATTGGTTTTAAGAGAAA
128 TTTCTAAAATTTGTATTTCAA-GGAAAAGTGTAACAAGCG-AGACGAAATTGGTTTTAAGAAAAA
* * * * *
32124 TAATTTTAAGTG-AGATAAATTTTTGTTTCTAGTGAAATAAATTCTAA
191 CAATCTCAAGTGCA-ATAAATTTTTGTTTCAAGTGAAACAAATTCTAA
*
32171 AATTTTTGTTTCAAGGGAAA
1 AATTTTTGTTTCAAGTGAAA
32191 TTAGGTCATG
Statistics
Matches: 217, Mismatches: 31, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
233 1 0.00
234 34 0.16
235 98 0.45
236 1 0.00
237 7 0.03
238 44 0.20
239 29 0.13
240 3 0.01
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.36
Consensus pattern (237 bp):
AATTTTTGTTTCAAGTGAAACAATTTATAAACTTTGTGTTTCAAGAGAAAACATTCTCAAGCAAG
ACGAAATTGGTTTTAAGAAAAAAAAATCCCAAGTAGATGAATTTTATTTTTGAGTGAAACAATTT
CTAAAATTTGTATTTCAAGGAAAAGTGTAACAAGCGAGACGAAATTGGTTTTAAGAAAAACAATC
TCAAGTGCAATAAATTTTTGTTTCAAGTGAAACAAATTCTAA
Found at i:32172 original size:104 final size:101
Alignment explanation
Indices: 31935--32779 Score: 380
Period size: 103 Copynumber: 8.4 Consensus size: 101
31925 ACAATTTCTG
* * * **
31935 AAATTTTTGTTTCAAGTGAAACAATTTATGAAATTTGTGTTTCAAGGGAAACTGTCTCAAGCAAT
1 AAATTTTTGTTTCTAGTGAAACAATTTATAAAATTTGTGTTTCAAGGAAAACTGTAACAAGCAAT
*
32000 ATGAAATTGGTTTTAAGAAAAACAAACTCAAGTGAT
66 AGGAAATTGGTTTTAAGAAAAACAAACTCAAGTGAT
* * * *
32036 GAATTTTTGTTT-TGAGTGAAACAATTTGTAAAATTTGTGTTTCAATGGAAAAGTGTAACTAGCG
1 AAATTTTTGTTTCT-AGTGAAACAATTTATAAAATTTGTGTTTCAA-GGAAAACTGTAACAAGC-
* * * ** *
32100 CA-AGGAAATTGGTTTTAAGAGAAATAATTTTAAGTGAGAT
63 AATAGGAAATTGGTTTTAAGAAAAACAAACTCAAGT--GAT
* * * * * *
32140 AAATTTTTGTTTCTAGTGAAATAAATTCTAAAATTTTTGTTTCAAGGGAAA-T-T---AGGTC-A
1 AAATTTTTGTTTCTAGTGAAACAATTTATAAAATTTGTGTTTCAAGGAAAACTGTAACAAG-CAA
** * * * *
32199 T-GCG--A---G--ACAA-AAAAATAAATATCAAGTAAG
65 TAG-GAAATTGGTTTTAAGAAAAACAAA-CTCAAGTGAT
* * * * * * *** *
32229 AAGATTTTTTGTTTCGAGTGAAAGAATTTCTAAAATTTGTGTTTCGAGGGAAATTGTCTTAAGCG
1 AA-A-TTTTTGTTTCTAGTGAAACAATTTATAAAATTTGTGTTTCAAGGAAAACTGTAACAAGCA
* * * * *
32294 AGATGAAATTGGTTTTAAGAAGAATAATCTCAAGTGAGAT
64 ATAGGAAATTGGTTTTAAGAAAAACAAACTCAAGT--GAT
* * * **
32334 GAA-TTTTGTTTCGAGTGAAACAATTTGTAAAATTTGTGTTTCAAGGGAAAACTGTGTCAAGCAA
1 AAATTTTTGTTTCTAGTGAAACAATTTATAAAATTTGTGTTTCAA-GGAAAACTGTAACAAGCAA
* * **
32398 GAAGAAATTGGTTTTAAGAAAAACAATTTCAAGTGAGTT
65 TAGGAAATTGGTTTTAAGAAAAACAAACTCAAGTGA--T
* * * * * **
32437 GAAA-TTTTGTTTCGAG-GTAAACAATTTCTTAAATTTGCGTTTCAAGAAAAAAACTGTCTCAAG
1 -AAATTTTTGTTTCTAGTG-AAACAATTTATAAAATTTGTGTTTCAAG--GAAAACTGTAACAAG
** * * * * *
32500 TGAGATGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGA-
62 CAATAGGAAATTGGTTTTAAGAAAAACAAACTCAAGTGAT
* * * * * * **
32539 GAATTTTT-TTCTTTGAGTAAAACAATTT-CAAAATTTGTGTTTCAAGGGAAACTATCTCAAG-A
1 AAATTTTTGTT-TCT-AGTGAAACAATTTATAAAATTTGTGTTTCAAGGAAAACTGTAACAAGCA
** * * * *
32601 GGGACGAAATTGATTTTAAGAAAAATAATA-TCACGTGAGAT
64 -ATAGGAAATTGGTTTTAAGAAAAACAA-ACTCAAGT--GAT
* * **
32642 AAATTTTTGTTTCATA-TGAAACAATTTCTAAAATATT-TGTTT-AAGGGGAAACTGTCTCAAGC
1 AAATTTTTGTTTC-TAGTGAAACAATTTATAAAAT-TTGTGTTTCAA-GGAAAACTGTAACAAGC
* * * * * *
32704 GAGACGAAATTGGTTTTACGAAAAACAATCTCAAGTTATTT
63 AATAGGAAATTGGTTTTAAGAAAAACAAACTCAAGTGA--T
* * *
32745 GAATTTTTGTTTATAGTGAAACAATTT-CAAAATTT
1 AAATTTTTGTTTCTAGTGAAACAATTTATAAAATTT
32780 TTTGCTTCTA
Statistics
Matches: 582, Mismatches: 107, Indels: 110
0.73 0.13 0.14
Matches are distributed among these distances:
89 3 0.01
90 8 0.01
91 50 0.09
92 1 0.00
93 2 0.00
95 1 0.00
96 5 0.01
97 2 0.00
98 3 0.01
99 1 0.00
100 39 0.07
101 51 0.09
102 119 0.20
103 157 0.27
104 92 0.16
105 48 0.08
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (101 bp):
AAATTTTTGTTTCTAGTGAAACAATTTATAAAATTTGTGTTTCAAGGAAAACTGTAACAAGCAAT
AGGAAATTGGTTTTAAGAAAAACAAACTCAAGTGAT
Found at i:32537 original size:105 final size:104
Alignment explanation
Indices: 32235--32843 Score: 555
Period size: 103 Copynumber: 5.9 Consensus size: 104
32225 TAAGAAGATT
* * * *
32235 TTTTGTTTCGAGTGAAAGAATTTCTAAAATTTGTGTTTC--GAGGGAAATTGTCTTAAGCGAGAT
1 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAGAT
* *
32298 GAAATTGGTTTTAAGAAGAATAATCTCAAGTGAGATGAA
66 GAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA
* * * *
32337 TTTTGTTTCGAGTGAAACAATTTGTAAAATTTGTGTTTCAAG-GGAAAACTGTGTCAAGCAAGAA
1 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAGAT
* *
32401 GAAATTGGTTTTAAGAAAAACAATTTCAAGTGAGTTGAAA
66 GAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATG-AA
* * ** *
32441 TTTTGTTTCGAG-GTAAACAATTTCTTAAATTTGCGTTTCAAGAAAAAAACTGTCTCAAGTGAGA
1 TTTTGTTTCGAGTG-AAACAATTTCTAAAATTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAGA
* * * *
32505 TGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGAGA--AT
65 TGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA
* * * * * *
32543 TTTTTTCTTTGAGTAAAACAATTTC-AAAATTTGTGTTTCAAG-GG-AAACTATCTCAAGAGGGA
1 TTTTGT-TTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAGA
* * * * * *
32605 CGAAATTGATTTTAAGAAAAATAATATCACGTGAGATAAA
65 TGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA
* *
32645 TTTTTGTTTC-ATATGAAACAATTTCTAAAATATT-TGTTT-AAG-GGGAAACTGTCTCAAGCGA
1 -TTTTGTTTCGA-GTGAAACAATTTCTAAAAT-TTGTGTTTCAAGAGGAAAACTGTCTCAAGCGA
* * * **
32706 GACGAAATTGGTTTTACGAAAAACAATCTCAAGTTATTTGAA
63 GATGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA
** * * * * * * * *
32748 TTTTTGTTTATAGTGAAACAATTTC-AAAATTTTTTGCTTCTAGA-AAAAATTGTCTGAGGCAAG
1 -TTTTGTTTCGAGTGAAACAATTTCTAAAA-TTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAG
* * *
32811 ACGAATTTGGTTTTAAGAAAAAAAAATCTCAAG
64 ATGAAATTGGTTTTAAG-AAAAACAATCTCAAG
32844 CAAGACGAAA
Statistics
Matches: 413, Mismatches: 74, Indels: 37
0.79 0.14 0.07
Matches are distributed among these distances:
100 44 0.11
101 1 0.00
102 83 0.20
103 152 0.37
104 73 0.18
105 60 0.15
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (104 bp):
TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGAGGAAAACTGTCTCAAGCGAGAT
GAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA
Found at i:32666 original size:205 final size:205
Alignment explanation
Indices: 32283--32728 Score: 510
Period size: 205 Copynumber: 2.2 Consensus size: 205
32273 CGAGGGAAAT
* * * * *
32283 TGTCTTAAGCGAGATGAAATTGGTTTTAAGAAGAATAATCTCAAGTGAGATGAATTTTGTTTCGA
1 TGTCTCAAGCGAGATGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGAGA-GAATTTTGTTTCGA
* * * * *
32348 GTGAAACAATTTGTAAAATTTGTGTTTCAAGGGAAAACTGTGTCAAGCAAGAAGAAATTGGTTTT
65 GTAAAACAATTTGCAAAATTTGTGTTTCAAGGGAAAACTATCTCAAGCAAGAAGAAATTGATTTT
* * *
32413 AAGAAAAACAATTTCAAGTGAGTTGAAATTTTGTTTCGAGGTAAACAATTTCTTAAAT-TTGCGT
130 AAGAAAAACAATATCAAGTGAGATGAAATTTTGTTTCGAGGTAAACAATTTCTAAAATATT-CGT
32477 TTCAAGAAAAAAAC
194 TT-AAG-AAAAAAC
* * * *
32491 TGTCTCAAGTGAGATGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGAGA-ATTTTTTTCTTTGA
1 TGTCTCAAGCGAGATGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGAGAGAATTTTGT-TTCGA
* *
32555 GTAAAACAATTT-CAAAATTTGTGTTTCAAGGG-AAACTATCTCAAG-AGGGACGAAATTGATTT
65 GTAAAACAATTTGCAAAATTTGTGTTTCAAGGGAAAACTATCTCAAGCA-AGAAGAAATTGATTT
* * ** *
32617 TAAGAAAAATAATATCACGTGAGAT-AAATTTTTGTTTC-ATATGAAACAATTTCTAAAATATTT
129 TAAGAAAAACAATATCAAGTGAGATGAAA-TTTTGTTTCGAGGT-AAACAATTTCTAAAATATTC
***
32680 GTTTAAGGGGAAAC
192 GTTTAAGAAAAAAC
* *
32694 TGTCTCAAGCGAGACGAAATTGGTTTTACGAAAAA
1 TGTCTCAAGCGAGATGAAATTGGTTTTAAGAAAAA
32729 CAATCTCAAG
Statistics
Matches: 203, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
203 36 0.18
204 9 0.04
205 72 0.35
206 27 0.13
207 15 0.07
208 44 0.22
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (205 bp):
TGTCTCAAGCGAGATGAAATTGGTTTTAAGAAAAAGAAGCTAAAGTGAGAGAATTTTGTTTCGAG
TAAAACAATTTGCAAAATTTGTGTTTCAAGGGAAAACTATCTCAAGCAAGAAGAAATTGATTTTA
AGAAAAACAATATCAAGTGAGATGAAATTTTGTTTCGAGGTAAACAATTTCTAAAATATTCGTTT
AAGAAAAAAC
Found at i:32876 original size:36 final size:37
Alignment explanation
Indices: 32806--32877 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
32796 ATTGTCTGAG
*
32806 GCAAGACGAATTTGGTTTTAAGAAAAAAAAATCTCAA
1 GCAAGACGAAATTGGTTTTAAGAAAAAAAAATCTCAA
*
32843 GCAAGACGAAATTGGTTTTAAG-AAAAACAATCTCA
1 GCAAGACGAAATTGGTTTTAAGAAAAAAAAATCTCA
32878 GGTGATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
36 12 0.36
37 21 0.64
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.24
Consensus pattern (37 bp):
GCAAGACGAAATTGGTTTTAAGAAAAAAAAATCTCAA
Found at i:32994 original size:103 final size:103
Alignment explanation
Indices: 32837--40319 Score: 7110
Period size: 103 Copynumber: 73.9 Consensus size: 103
32827 GAAAAAAAAA
* * * *
32837 TCTCAAGCAAGACGAAATTGGTTTTAAGAAAAACAATCTCAGGTGATATAAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
32902 TGAAGCAATTTCTAAAATTTGTGTTTCAGGGGAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * *
32940 TCTCAAGAGAGACGAAATTGGTTTTAAGAAAATCAATCTCAAGTGAGATGAATTTTTGTTTCGGG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
33005 TAAAACAATTTCTAAAATTTGCGTTTCAAGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* ** * * * *
33044 TGTCTAA-TTAGA-GAAAATTGGTTTAAAGAGAAACAATCTCAAGTGACATGAATTTTTGTTTCT
1 TCTC-AAGCGAGACG-AAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCG
* *
33107 AGTG-AA-AA-TT-T---A---G-GTTTCAAGGTAAATTG
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * * *
33136 TCTCATGCGAGACGAAATTGATTTTAAGAAAATCAATCTCATGTGAAATGAAATTTTCTTTCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
33201 TAAAACAATTTCTAAAATTTGTGTTTCAA-GGAAATTTA
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTG
* * * * * * * * * *
33239 TCTCAAGCGAAACAAAAATGGTTCTAAGAAAAACATTCACAAGTGTGATG-CTTTTTTTTTCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * * *
33303 TGAAATATTTTCGAAAATTTTTGTGTCAAGGGAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * *
33341 TCTCAAGCGAGATGAAATTGGTTGTAA-AAAAATATTCTCAAGTGAGATGATTTTTTGTTTCGAA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCG-A
* * * *
33405 GTGAAACAATATCGAAAAAATTTGT-CTT-AAGGAAAACTG
65 GTGAAACAATTTC--TAAAATTTGTGTTTCAAGGGAAACTG
** * * * ** * ** * *
33444 --TCAAGTAAGACAAAATTGGTTTTCAGGAAATTAATCTCAAATTCGTTTAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * * *
33507 TGAAACAAATTGTGAAATTTGAGTTTCAAGGGAAAATTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * ** * * *
33546 TCTCAATCGAGATGAAATTACTTTTAAGAAAAACATTCTCAAGTGAGATGAAGTTTAGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
33611 TGAAACAATTTCTAACATTTGTGTTTCAAGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
** * * * *
33650 TCTCAAGCGAGAATAAATTAGTTTTAAGAAAAAGAATCTCAAGTAAGA-CAA-TTTT-TTTCTGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTC-GA
*
33712 GTGAAACAATTTC-AAAATTTATGTTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * *
33750 TCTTAAGCGATACAAAATTGATATTAAGAAAAATAATCTCAAGTGAAAT-ATATTTTTGTTTC-A
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA-ATTTTTGTTTCGA
* *
33813 CGTGAAACAATTTCTAAAATTTGTGTTTCAAGGAAAATTG
65 -GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* ** * ** *
33853 TCTCTAGAAAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTGATTTG-ATTTTT-TTT-GAC
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
33915 TTAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACAT-
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAAC-TG
* * * * *
33954 TCTCAGGCGATACAAAATTAGTTTTAAGAAAAACAATC-CAAAGTGAGATGAATTTTCGTTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTC-AAGTGAGATGAATTTTTGTTTCGA
* *
34018 GTGAAACAATTTCTAGAATTTGTATTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
34057 CCTCAAGCGAGACGAAATTAGTTTTAAGAAAAAAAATCTCAAGTGAAATAAATTTTTGTTTTGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
34122 TGAAACAATTTCTGAAATTTGTGTTTCAAGGGAAATTA
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
34160 TCTCAAGCAAGATGAAATTGGTTTTAAGAAAAACAAACTCAAGT--CATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
34223 TGAAACAATTTCAAAAATTTGTATTTCAAGGGAAAAGTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
** * * ** *
34262 TAACAAGCGAGAGGAAATTGGTTTTAAGAAAAACAATTTCAAGTGAGATGAATTTTCATTTCTAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
34327 TGAAACAATTTCTAAAATTTGTGTTTCAAAGTAAATTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * *
34365 TGTCATGCGACAC-AAA--------AA-CATAAC---CTCAAGTGAGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
34417 TGAAACAATTTCTAAAATTT-TGTTTCAAGGGAAATTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
34454 TCTTAAGCAAGACGGAATTGGTTTTAAGAAGAATAATATCAAGTGAGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
34519 TGAAACAATTTGTAAAATTTGTGTTTCAAGGGAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
34557 TCTCAGGCGAGAAGAAATTGGTTTTAAGAAGAACAATCTCATGTGAGATGAAATTTTGTTTAGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
34622 TGAAACAATTTCTAAAATTTGTGTTTCAAGAGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAG-GGAAACTG
* * * *
34661 TCTCAAGCGAGATGAAAATGGTTTTAAGAAAAAGAATCTCAAGT--GAT-AATTTTT-TTCCTGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTC-GA
* * *
34722 GTGAAACACTTTC--AAATTT-T-TTTCGAGGGAAACTA
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * * *
34757 TATCAAGAGAGACGAAATTGATATTAAG-AAAATAATATTAAGTGAGATAAATTTTTGTTTC-AT
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA-
* * *
34820 GTGAAACAATTTCTAAATTTTTTGTTTGAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
34859 TCTCAAGCGAGAAGAAATTGGTTTTAAGAAAAACAGTCTCAAGTG-GTTTGAATATTTTTTTTCG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAG-ATGAAT-TTTTGTTTCG
** * * *** *
34923 AGTGAAACAATTTCTAATTTTTTTGTTTTAAAAAAAATTG
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * *
34963 TCTCAGGCAAGACGAATTTGGTTTTAAGAAAAACAATCTCAAGTGAGAAGAAATTTTATTTCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * * *
35028 TGGAATAATTTCTAAATTTTGTTTTTCAAGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * *
35066 TCTCAAGCGAGAAGAAATTGGTTTTAAGAAAAACAATCTCAGGTGAAAT-ATATTTTAGTTTCTA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA-ATTTTTGTTTCGA
* * *
35130 GTGAAGCAATTTCTAAAATTTGTGTTTTAAGGGAAACTA
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * *
35169 TCTCAAGTGAGACGAAATTGGTTTGAAGGAAAACCATATCATGTAAGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
35234 T---A-AATTTCTAAAATTTGTTTTTCAAGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * * * *
35269 TGTCAAGCTAGA-GAAAATTAGTTTTAAGAAAAATAATCTCAATTGAGATGAATTTTTGTTTCTA
1 TCTCAAGCGAGACG-AAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
*
35333 GTGAAACAATTTCTAAAATTTGTGTTTCAA-GGAAATTTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAA-CTG
* * * * *
35372 TCTTAAGCGAGATGAAATTGGTTTTAAGAAAAACAATCTTAAGTGAGATGAATTTTTCTTTCGAA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
35437 TG-AATAATTTCTAAAAGTTGTGTTTCAAGGGAAAATTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * * *
35475 TCTCAAGCGAGACGAGATTAGTTTTAAGAAAAACATTCTCAAGTGAGATTAATTTTTATTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * * *
35540 TGATACAATTTCAAAAATTTTTGTTTCATGGGAAATTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * ** * * * *
35578 TCTCAAGCAAGATGAAATTAATTTTAAGAAAAACAATCTCAAATGAGATTAATTTTTTTTCTTCA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGT-TTCG
* * *
35643 AGTGAAACAATTTGTAAAATTTGAGTTTCAAGGGAAAACTA
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* *
35684 TCTCAGGCAAGACGAAATTGGTTTTAAGAAAAAACAATCTCAAGTGAGATGAATTTTTTGTTTCG
1 TCTCAAGCGAGACGAAATTGGTTTTAAG-AAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCG
* * * *
35749 ATTGAAATAATTTCTAAAATTTGTGTTTAAATGGAAAACTG
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAA-GGGAAACTG
* * * * * ** **
35790 TCTCAAACGAGAAGAAATTGGTTTTAAGAAAAAGAATCTCACGTTAGACAAATTTTT-CCT-GAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* ** *
35853 TGAAACAATTTC-AAAATTTCTAATTCAAGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * *
35890 TATCAAGCGAGATGAAATTTGTTTTAAGAAAAATAATCTCACA-TGAGAT-ATATTTTTATTTC-
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCA-AGTGAGATGA-ATTTTTGTTTCG
* * *
35952 ATGTGAAACAATTTCTAAAATTTGTTTTTAAAGGGAAAATG
64 A-GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
35993 TCTCAAACAAGATGAAATTGGTTTTAAGAAAAACAATATCAAGTGATATGAATTTTTAATTT-GA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTT-GTTTCGA
* *
36057 GTGAAACAATTTCTAAAATTTTTGTTTCAAGGGAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * ** * *
36096 TCTAAAGC-ATGATGAAATTGGTTTTAAGAAAAACAATCTCAAGTGATTTTAATTGTT-TTT-GA
1 TCTCAAGCGA-GACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
*
36158 GTTAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACAT-
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAAC-TG
* * * * * *
36198 TCACATGCTAGACGAAATTGATTTTAAGAAAAA-AATCTCAACTGAGATTG-ATTTTCGTTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGA-TGAATTTTTGTTTCGA
* * * *
36261 --GAAAAAAATTCTAGAATTTGTATTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * *
36298 TCTCAAGCGAGACAAAATTGGTTTTAAGAAGAACAATCTCAAGTGAGAT-AAGTTTTCGTTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA
* * ** *
36362 GTGAAATAATTTGTAAAATACGTGTTTCAAGGGAAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * *
36402 GCTCAAGCGATAAGAAATTGGTTTTAAG-AAAA-AATCTCAAGTGAGATAAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
36465 TGAAACAATTTTTAAAATTTATGTTTCTAGGGAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
** * *
36503 TCTCAAGCGAGATTAAATTGGTTTTAAGAAAAAGAATATCAAGTGAGA--ATATTTTT-TTTCTG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGA-ATTTTTGTTTC-G
* * *
36565 -GTGAAACAATTTC-AAAATTTATATTTCAAGGGAAATTG
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * * * *
36603 TCTTAAGCGAGACGAAATTGATTTTAAGAAAAATAATATCAATTGGGATAAAATTTTGTTTCGTA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCG-A
* * * *
36668 -CGAAATAATTTCTAAAATTTGTGTGTCAAGAGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * ** *
36706 TCTGAAGCAAGACGATATTGCTTTTTAAGAAAAACAATCTCAAGTGATTTTAATTTTTGTTTCGA
1 TCTCAAGCGAGACGAAATTG-GTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* * * * * *
36771 GTTAAACATTTTGTAATATTTGTGTATCAAGGGAAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * *
36811 TCTAAAGCAAGGCGAAATTGGTTTTTAA-AAAAA-AATCTCAAGTGAGATGAATTTTTGTTTCGA
1 TCTCAAGCGAGACGAAATTGG-TTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
36874 GTGAAACAATTTCTAAAATTTGTATTTCAAAGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * **
36913 TCTCAAGCGAGACAAAATTGATTTTAAG-AAAACAA-CATCAA--GAGAT-TTTTTTTGTTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATC-TCAAGTGAGATGAATTTTTGTTTCGA
*
36973 GTGAAACTATTTCTAAAATTTGTGTTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
37012 TCTCAAGCGAGA-TAAATTTGGTTTCAAGAAAAACAATCTCAAGTGACATCAA-TTTT-TTTCGA
1 TCTCAAGCGAGACGAAA-TTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* * *
37074 TTG-AATAATTTCTAAAATTTGAGTTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * ** *
37112 ACTCAAGC-ATGACAAAATTGGTTTTAAGAAAAACAATATGAAGTGATTTGAA--ATT-TTTCGA
1 TCTCAAGCGA-GACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
37173 GTG-AACTAATATCTAAAATTTGTGTTTCAAAGGAAAACAT-
65 GTGAAAC-AATTTCTAAAATTTGTGTTTC-AAGGGAAAC-TG
* * * **
37213 TCTCAGGCTAGACGAAATTGG-TTTAAGAAAAACAATCTCAAGTG-GATGATTTTTTGTTTCTTG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
37276 TGAAACAATTTCTAGAATTTGTATTTCAAGGGAAACGG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * *
37314 TCTTAAGTGAGACAAAATTGGTTTTAAGAAAAACAATCTCAAGTAAGATAAATTTTTGTTTC-AC
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA-
*
37378 ATGAAACAATTTCTAAAATATT-TGTTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAAT-TTGTGTTTCAAGGGAAACTG
* * * * * ** *
37417 TCTCAAGTGACACAAAATTGGTTTTAAGAAAAACAAACTCAAGTAATTTGAATTTTTATTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * *
37482 TAAAACAAATTGTAAAATTTGTGTTTCAAGGGAAAAGTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
** * *
37521 TCTCAAGTAAGATGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
37586 TGAAACAATTTCTAAAATTTG-GGTTCAAGGGAACAATG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAA-ACTG
* * *
37624 TCTCAAGTGAGACGAAATTGGTTTTAAGAAAAACATTCTCAAGTGAGATGAATTTTTGTTTCGTG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
37689 TGAAACAATTTCTAAAATTTGTGTTTCAAGGTAAGCTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
*
37727 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAACCAATCTCAAGTGA-ATTG-ATTTTT-TTTCCG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGA-TGAATTTTTGTTT-CG
* *
37789 AATGAAACAATTTATAAAATTTGTGTTTCAAGGGAAAACAT-
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAAC-TG
* * * *
37830 TCACAGGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTTAGATGAATTTTCT-TTTCAA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTT-TGTTTCGA
* * *
37894 ATGAAACAATTTCTAGAATTTGTATTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
37933 TCTCATGCGAGACAAAATTGGTTTTAGGAAAAATAATCTCAAGTG-GAATGAATTTTTGTTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAG-ATGAATTTTTGTTTCGA
* *
37997 GTGAAACAATTTCTAAAATTTCTGTTTCAAGGGAAAAATG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * * * * * * *
38037 TGTCATGC-AGGAGGAAATTGG-TTTAAAAAAAATAATTTCAAGTGAGAT-AAATTGTGTTTCTA
1 TCTCAAGCGA-GACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
38099 GTGAAACAATTACTAAAATTTGTGTTTCAAGGGAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* *
38138 TGTCATGCGAGAC-AAA-------T------AA-AATCTCAAGTGAGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * *
38188 TCAAATAATTTGTAAAATTTGTAATTT-AAGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGT-GTTTCAAGGG-AAACTG
** * * * *
38227 TCTCAAGCGAGATTAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTTCTTTCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
38292 TG-AA-AATTTCTAAAATTTGTGTTTCAAGGGAAAAT-
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* ** * *
38327 TCTCAAGCAAGATTAAATTGGTTTTAAGAAAAAAGAATCTCAAGT--GA-GAA-TTTT-TTCCTG
1 TCTCAAGCGAGACGAAATTGGTTTTAAG-AAAAACAATCTCAAGTGAGATGAATTTTTGTTTC-G
* * * *
38387 AGTGAAACAATTTC-AAAA-TTATGTTTCAATGGAAATTA
64 AGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * ** * * * * *
38425 TCTC-AGATGAGACCAAATTTATTTTAAG-AAAATAATATAAAATGAGATAAATTTTTGTTTC-A
1 TCTCAAG-CGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
*
38487 TGTGAAACAATTTCTAAAATTTTTGTTTCAA-GGAAACTG
65 -GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * **
38526 TCTCAAGCAAGGCGAAATTAGTTTTAAGAAAAACAATCTCAAGTGATTTGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * * * *
38591 TAAAACGATTTCTAAAATTAT-TGTTGCAAAAGAAAAATG
66 TGAAACAATTTCTAAAATT-TGTGTTTC-AAGGGAAACTG
* * * * * *
38630 TCTC-AGACAAGACGAATTTGCTTTTATGAAAAATAATCTCAAGTGAGATGAATTTTTGTTTTGA
1 TCTCAAG-CGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* * * * *
38694 TTGAAACAATTTCTAATATTTGTTTTTCAAGGAAAAATG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * ** * * * *
38733 TCTCGAGCGAGA-TAAATTTTATTTTAAGAAAAATAATCTCAAGTGAAATAAATTTTTGTTTCAA
1 TCTCAAGCGAGACGAAA-TTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
38797 GTGAAACAATTTTTAAAATTTGTGGTTCAAGGGAAACTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * *
38836 TCTCAAGCGAGATGAAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAA-TTTT-TTTCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * * *
38899 TAAAACAATTCCTAAAATATGTGTTTCATGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* ** * **
38938 TGTCAAGCGAGA-G--ATTTTTTTTAAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTTTA
1 TCTCAAGCGAGACGAAATTGGTTTT-AAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
39000 GTG-----------AAAATTTGGGTTT-ATAGGGAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCA-AGGGAAACTG
* * * * * *
39028 CCTTATGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAATTTTTCTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
39093 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
39131 TCTCAAGCAAGATGAAATT-ATTTTAAGAAAAACAATCTCAAGTGAAAT-AATTTTT-TTCCAAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
39193 TGAAACAATTTCTAAATTTTGTGTTTCAAGGGAAACTA
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
39231 TCTCAATCGAGACAAAATTGGTTTTAAG-AAAACAATCTCAAGTTAGATGAATTTTT-TTCCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* *
39294 TAAAACAATTCCTAAAATTTGTGTTTCAAGGGAAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * *
39333 TGTCAAGCGAGA-GAAAATTGGTTTTAAGAAAAACAATATCAAATGAGATGAATTTTTGTTTCTA
1 TCTCAAGCGAGACG-AAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* * * *
39397 GTG-----------AAAATTTGGGTTTAAATGGAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* **
39425 TCT-AATGCGAGACGAAATTGATTTTAAGAAAATGAATCTCAAGTGAGATGAATTTTTGTTTCGA
1 TCTCAA-GCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
*
39489 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * ** *
39528 TCTCTAGCAAGATGAAATTGATTTTAAGAAAAACAATCTCAAGTGATTTGAA---TTGTTTTGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
39590 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACAT-
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAAC-TG
* * *
39629 TCTCAGGCGAGACGAAATTGGTTTTAACAAAAACAATCTC-AGATGAGATGAA--TTTATTTCGA
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAG-TGAGATGAATTTTTGTTTCGA
* * * * *
39691 GTGAAAAAATTTCTAAAATTTTTATTTCAGGGGAAACTA
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* ** * * * **
39730 CCTCAAGAAAGACGAAATTGGTTTTAAGAAAAACAATATCAATTGAAAT-AATTTTTTGTTTCTT
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAA-TTTTTGTTTCGA
* * * * *
39794 GTGAAACAATTTTTAAAATTTGTTTTTCAAAGAAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
39833 TCTCAAGCGAGACAAAATTGATTTTAAGAAAAATAATCTCAAGTGGGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* ** * *
39898 GGAAACCGTTTTTAAAAATTGTGTTTCAAGGGAAACTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * * * *
39936 TGTCAA--GAGAGGAAATTTAGTTTTAAGATAAACAATTTCAAGTGAGATGAATTTTTGTTTCTA
1 TCTCAAGCGAGACGAAA-TTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGA
* *
39999 GTGAAACAATTTCTAAAATTTTTGTTTCAAGGGAAATTG
65 GTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * * *
40038 TGTCACGCGAGAC------------AA-AAAACCAATCTCAAGTGATATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * ** * *
40090 CGAAACAATTTCTAAAATTTGTGTTTCGAGATAAATTA
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
* * *
40128 TCTTAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTTAAGTGAGATGAATTTTTGTTTTGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
* * *
40193 TGAAAAAATTTGTAAAATTTGTGTTTCAAGGGAAAAGTG
66 TGAAACAATTTCTAAAATTTGTGTTTCAAGGG-AAACTG
* * * * * *
40232 TCTCAAGTGAGGCAAAATTGATTTTAAGAAAAACAACCTTAAGTGAGATGAATTTTTGTTTCGAG
1 TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
*
40297 TGAAACAATTTTTAAAATTTGTG
66 TGAAACAATTTCTAAAATTTGTG
40320 CAACAATCAT
Statistics
Matches: 6064, Mismatches: 1027, Indels: 577
0.79 0.13 0.08
Matches are distributed among these distances:
87 14 0.00
88 37 0.01
89 41 0.01
90 137 0.02
91 20 0.00
92 151 0.02
93 40 0.01
94 6 0.00
95 14 0.00
96 43 0.01
97 38 0.01
98 54 0.01
99 150 0.02
100 612 0.10
101 692 0.11
102 906 0.15
103 1998 0.33
104 900 0.15
105 94 0.02
106 86 0.01
107 31 0.01
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (103 bp):
TCTCAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAG
TGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAACTG
Found at i:33067 original size:244 final size:242
Alignment explanation
Indices: 32603--33086 Score: 582
Period size: 244 Copynumber: 2.0 Consensus size: 242
32593 TCTCAAGAGG
*
32603 GACGAAATTGATTTTAAGAAAAATAATATCACGTGAGATAAATTTTTGTTTCATATGAAACAATT
1 GACGAAATTGATTTTAAGAAAAACAATATCACGTGAGATAAATTTTTGTTTCATATGAAACAATT
* *
32668 TCTAAAATATTTGTTTAAGGGGAAACTGTCTCAAGCGAGACGAAATTGGTTTTACGAAAAACAAT
66 TCTAAAATATTTGTTTAAGGGGAAACTGTCTCAAGAGAGACGAAATTGGTTTTAAGAAAAACAAT
* ** * * ** *
32733 CTCAAGTTATTTGAATTTTTGTTTATAGTGAAACAATTTCAAAATTTTTTGCTTCTAGAAAAAAT
131 CTCAAGTGAGATGAATTTTTGTTTAGAGTAAAACAATTTCAAAATTTTGCGCTTCAAGAAAAAAT
* * *
32798 TGTCTGAGGCAAGACGAATTTGGTTTTAAGAAAAAAAAATCTCAAGCAA
196 TGTCTGAAGCAAGAC-AAATTGGTTTAAAG-AAAAAAAATCTCAAGCAA
* * * * * *
32847 GACGAAATTGGTTTTAAGAAAAACAATCTCAGGTGATATAAATTTTTGTTTCGA-GTGAAGCAAT
1 GACGAAATTGATTTTAAGAAAAACAATATCACGTGAGATAAATTTTTGTTTC-ATATGAAACAAT
* *
32911 TTCTAAAAT-TTGTGTTTCAGGGGAAACTGTCTCAAGAGAGACGAAATTGGTTTTAAGAAAATCA
65 TTCTAAAATATT-TGTTTAAGGGGAAACTGTCTCAAGAGAGACGAAATTGGTTTTAAGAAAAACA
* * * *
32975 ATCTCAAGTGAGATGAATTTTTGTTTCGGGTAAAACAATTTCTAAAA-TTTGCGTTTCAAGGGAA
129 ATCTCAAGTGAGATGAATTTTTGTTTAGAGTAAAACAATTTC-AAAATTTTGCGCTTCAA-GAAA
* ** * *
33039 AACTGTGTCT-AATTAGAGA-AAATTGGTTTAAAGAGAAACAATCTCAAG
192 AAAT-TGTCTGAAGCA-AGACAAATTGGTTTAAAGAAAAAAAATCTCAAG
33087 TGACATGAAT
Statistics
Matches: 203, Mismatches: 31, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
243 15 0.07
244 167 0.82
245 13 0.06
246 8 0.04
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (242 bp):
GACGAAATTGATTTTAAGAAAAACAATATCACGTGAGATAAATTTTTGTTTCATATGAAACAATT
TCTAAAATATTTGTTTAAGGGGAAACTGTCTCAAGAGAGACGAAATTGGTTTTAAGAAAAACAAT
CTCAAGTGAGATGAATTTTTGTTTAGAGTAAAACAATTTCAAAATTTTGCGCTTCAAGAAAAAAT
TGTCTGAAGCAAGACAAATTGGTTTAAAGAAAAAAAATCTCAAGCAA
Found at i:37066 original size:36 final size:37
Alignment explanation
Indices: 36988--37066 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 37
36978 ACTATTTCTA
** ** *
36988 AAATTTGTGTTTCAAGGGAAACTGTCTCAAGCGAGAT
1 AAATTTGTGTTTCAAGAAAAACAATCTCAAGCGACAT
*
37025 AAATTTG-GTTTCAAGAAAAACAATCTCAAGTGACAT
1 AAATTTGTGTTTCAAGAAAAACAATCTCAAGCGACAT
*
37061 CAATTT
1 AAATTT
37067 TTTTCGATTG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
36 28 0.80
37 7 0.20
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (37 bp):
AAATTTGTGTTTCAAGAAAAACAATCTCAAGCGACAT
Found at i:38247 original size:190 final size:190
Alignment explanation
Indices: 37967--38324 Score: 483
Period size: 190 Copynumber: 1.9 Consensus size: 190
37957 TAGGAAAAAT
* *
37967 AATCTCAAGTGGAATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTCTGTTTCAAGGGAA
1 AATCTCAAGTGGAATGAATTTTTGTTTCGAGTCAAACAATTTCTAAAATTTCTATTTCAAGGGAA
* * * * *
38032 AAATGTGTCATGCAGGAGGAAATTGG-TTTAAAAAAAATAATTTCAAGTGAGAT-AAATTGTGTT
66 AAATGTCTCAAGCAGGAGGAAATTGGTTTTAAAAAAAACAATCTCAAGTGAGATAAAATTGTCTT
*
38095 TCTAGTGAAACAATTACTAAAATTTGTGTTTCAAGGGAAATTGTGTCATGCGAGACAAATAA
131 TCAAGTG-AA-AATTACTAAAATTTGTGTTTCAAGGGAAATTGTGTCATGCGAGACAAATAA
* * *
38157 AATCTCAAGT-GAGATGAATTTTTGTTTCGAGTCAAATAATTTGTAAAATTTGTAATTT-AAGGG
1 AATCTCAAGTGGA-ATGAATTTTTGTTTCGAGTCAAACAATTTCTAAAATTTCT-ATTTCAAGGG
* ** * *
38220 AAAACTGTCTCAAGC-GAGATTAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAAATTTT
64 AAAAATGTCTCAAGCAG-GAGGAAATTGGTTTTAAAAAAAACAATCTCAAGTGAGATAAAATTGT
*
38284 CTTTCAAGTGAAAATTTCTAAAATTTGTGTTTCAAGGGAAA
128 CTTTCAAGTGAAAATTACTAAAATTTGTGTTTCAAGGGAAA
38325 ATTCTCAAGC
Statistics
Matches: 146, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
189 3 0.02
190 100 0.68
191 29 0.20
192 14 0.10
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (190 bp):
AATCTCAAGTGGAATGAATTTTTGTTTCGAGTCAAACAATTTCTAAAATTTCTATTTCAAGGGAA
AAATGTCTCAAGCAGGAGGAAATTGGTTTTAAAAAAAACAATCTCAAGTGAGATAAAATTGTCTT
TCAAGTGAAAATTACTAAAATTTGTGTTTCAAGGGAAATTGTGTCATGCGAGACAAATAA
Found at i:38329 original size:27 final size:27
Alignment explanation
Indices: 38275--38327 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
38265 TCAAGTGAGA
*
38275 TAAAATTTTCTTTCAAGTGAAAATTTC
1 TAAAATTTTCTTTCAAGGGAAAATTTC
*
38302 TAAAATTTGTGTTTCAAGGGAAAATT
1 TAAAATTT-TCTTTCAAGGGAAAATT
38328 CTCAAGCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.42
Consensus pattern (27 bp):
TAAAATTTTCTTTCAAGGGAAAATTTC
Found at i:39435 original size:397 final size:395
Alignment explanation
Indices: 38215--40319 Score: 1933
Period size: 397 Copynumber: 5.2 Consensus size: 395
38205 TTTGTAATTT
* ** * * * *
38215 AAGGGAAAACTGTCTCAAGCGAGATTAAATTGGTTTTAAGAAAAACAATCTCAAGTGAGATAAAA
1 AAGGG-AAATTGTCT-AAGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAT
* * *
38280 TTTTCTTTCAAGTG-AA-AATTTCTAAAATTTGTGTTTCAAGGGAAAAT-TCTCAAGCAAGATTA
64 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGA
* * *
38342 AATTGGTTTTAAGAAAAAAGAATCTCAAGTG--A-GAA-TTTTTTCCTGAGTGAAACAATTTC-A
129 AATT-ATTTTAAG-AAAAACAATCTCAAGTGAAATGAATTTTTTTCC-AAGTGAAACAATTTCTA
* * * * * ** * * *
38402 AAA-TTATGTTTCAATGGAAATTATCTC-AGATGAGACCAAATTTATTTTAAGAAAATAATATAA
191 AAATTTGTGTTTCAAGGGAAACTATCTCAAG-CGAGACGAAATTGGTTTTAAGAAAACAATCTCA
* * * *
38465 AATGAGATAAATTTTTGTTTC-ATGTGAAACAATTTCTAAAATTTTTGTTTCAA-GG-AAACTGT
255 AGTGAGATGAA-TTTT-TTTCGA-GTAAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGT
* * * * **
38527 CTCAAGCAAGGCGAAATTAGTTTTAAGAAAAACAATCTCAAGTGATTTGAATTTTTGTTTCGAGT
317 CTCAAGCGA-GAGAAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTC---T
* * *
38592 AAAACGATTTCTAAAATTAT-TGTTGCA
378 ---A-G---T-GAAAATT-TGGGTT-TA
* * * * * * * *
38619 AAAGAAAAATGTCTCAGACAAGACGAATTTGCTTTTATGAAAAAT-AATCTCAAGTGAGATGAAT
1 AAGGGAAATTGTCTAAG-CGAGACGAAATTGATTTTAAG-AAAATCAATCTCAAGTGAGATGAAT
* * * * * * *
38683 TTTTGTTTTGATTGAAACAATTTCTAATATTTGTTTTTCAAGGAAAAATGTCTCGAGCGAGAT-A
64 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGA
* * * *
38747 AATTTTATTTTAAGAAAAATAATCTCAAGTGAAATAAATTTTTGTTTCAAGTGAAACAATTTTTA
129 AA--TTATTTTAAGAAAAACAATCTCAAGTGAAATGAATTTTT-TTCCAAGTGAAACAATTTCTA
* * *
38812 AAATTTGTGGTTCAAGGGAAACTGTCTCAAGCGAGATGAAATTGGTTTTAAGAAAAACAATCTCA
191 AAATTTGTGTTTCAAGGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAG-AAAACAATCTCA
* * * * * *
38877 AATGAGATGAATTTTTTTCAAGTAAAACAATTCCTAAAATATGTGTTTCATGGGAAAACTGTGTC
255 AGTGAGATGAATTTTTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTC
** *
38942 AAGCGAGAG--ATTTTTTTTAAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTTTAGTGAA
320 AAGCGAGAGAAATTGGTTTT-AAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTCTAGTGAA
39005 AATTTGGGTTTA
384 AATTTGGGTTTA
* * *
39017 TAGGGAAATTGCCTTATGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAATT
1 AAGGGAAATTGTC-TAAGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAATT
*
39082 TTTCTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGAA
65 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGAA
*
39147 ATTATTTTAAGAAAAACAATCTCAAGTGAAAT-AATTTTTTTCCAAGTGAAACAATTTCTAAATT
130 ATTATTTTAAGAAAAACAATCTCAAGTGAAATGAATTTTTTTCCAAGTGAAACAATTTCTAAAAT
* * *
39211 TTGTGTTTCAAGGGAAACTATCTCAATCGAGACAAAATTGGTTTTAAGAAAACAATCTCAAGTTA
195 TTGTGTTTCAAGGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAGAAAACAATCTCAAGTGA
* *
39276 GATGAATTTTTTTCCGAGTAAAACAATTCCTAAAATTTGTGTTTCAAGGGAAAACTGTGTCAAGC
260 GATGAATTTTTTT-CGAGTAAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTCAAGC
*
39341 GAGAGAAAATTGGTTTTAAGAAAAACAATATCAAATGAGATGAATTTTTGTTTCTAGTGAAAATT
324 GAGAG-AAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTCTAGTGAAAATT
39406 TGGGTTTA
388 TGGGTTTA
* *
39414 AATGGAAATTGTCTAATGCGAGACGAAATTGATTTTAAGAAAATGAATCTCAAGTGAGATGAATT
1 AAGGGAAATTGTCTAA-GCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAATT
*
39479 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCTAGCAAGATGAA
65 TTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGAA
** * *
39544 ATTGATTTTAAGAAAAACAATCTCAAGTGATTTGAATTGTTTT--GAGTGAAACAATTTCTAAAA
130 ATT-ATTTTAAGAAAAACAATCTCAAGTGAAATGAATTTTTTTCCAAGTGAAACAATTTCTAAAA
* *
39607 TTTGTGTTTCAAGGGAAAAC-ATTCTCAGGCGAGACGAAATTGGTTTTAACAAAAACAATCTC-A
194 TTTGTGTTTCAAGGG-AAACTA-TCTCAAGCGAGACGAAATTGGTTTTAA-GAAAACAATCTCAA
* * * * **
39670 GATGAGATGAATTTATTTCGAGTGAAAA-AATTTCTAAAATTTTTATTTC-AGGGGAAACTACCT
256 G-TGAGATGAATTTTTTTCGAGT-AAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCT
** * * * *
39733 CAAGAAAGACGAAATTGGTTTTAAGAAAAACAATATCAATTGAAAT-AATTTTTTGTTTCTTGTG
319 CAAGCGAGA-GAAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAA-TTTTTGTTTCTAGTG
**
39797 AAACAATTTTTAAAATTTGTTTTTCA
382 -----------AAAATTTGGGTTT-A
* * *
39823 AA-GAAAATTGTCTCAAGCGAGACAAAATTGATTTTAAGAAAAAT-AATCTCAAGTGGGATGAAT
1 AAGGGAAATTGTCT-AAGCGAGACGAAATTGATTTTAAG-AAAATCAATCTCAAGTGAGATGAAT
* ** * * * * *
39886 TTTTGTTTCGAGGGAAACCGTTTTTAAAAATTGTGTTTCAAGGGAAACTGTGTCAAG--AGAGGA
64 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGA
* * * * *
39949 AATTTAGTTTTAAGATAAACAATTTCAAGTGAGATGAATTTTTGTTTCTAGTGAAACAATTTCTA
129 AA-TTA-TTTTAAGAAAAACAATCTCAAGTGAAATGAATTTTT-TTCCAAGTGAAACAATTTCTA
* * * * * *
40014 AAATTTTTGTTTCAAGGGAAATTGTGTCACGCGAGAC---A--------AA-AAACCAATCTCAA
191 AAATTTGTGTTTCAAGGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAGAAAACAATCTCAA
* ** * * *
40067 GTGATATGAATTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTC--GAGATAAATTATC
256 GTGAGATGAA-TTTT-TTTCGAGTAAAACAATTTCTAAAATTTGTGTTTCAAGGGA-AAACTGTC
* * *
40130 TTAAGCGAGACGAAATTGGTTTTAAGAAAAACAATCTTAAGTGAGATGAATTTTTGTTT-TGAGT
318 TCAAGCGAGA-GAAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTCT-AGT
*
40194 GAAAAAATTTGTAAAATTTGTGTTTC
381 G--AAAATTTG--------G-GTTTA
* * * * * * *
40220 AAGGGAAAAGTGTCTCAAGTGAGGCAAAATTGATTTTAAGAAAAACAACCTTAAGTGAGATGAAT
1 AAGGG-AAATTGTCT-AAGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAAT
*
40285 TTTTGTTTCGAGTGAAACAATTTTTAAAATTTGTG
64 TTTTGTTTCGAGTGAAACAATTTCTAAAATTTGTG
40320 CAACAATCAT
Statistics
Matches: 1437, Mismatches: 187, Indels: 159
0.81 0.10 0.09
Matches are distributed among these distances:
389 8 0.01
394 28 0.02
395 118 0.08
396 29 0.02
397 323 0.22
398 283 0.20
399 131 0.09
400 1 0.00
402 2 0.00
403 51 0.04
404 10 0.01
405 47 0.03
406 27 0.02
407 37 0.03
408 113 0.08
409 48 0.03
410 102 0.07
411 44 0.03
412 35 0.02
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.34
Consensus pattern (395 bp):
AAGGGAAATTGTCTAAGCGAGACGAAATTGATTTTAAGAAAATCAATCTCAAGTGAGATGAATTT
TTGTTTCGAGTGAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAATGTCTCAAGCAAGATGAAA
TTATTTTAAGAAAAACAATCTCAAGTGAAATGAATTTTTTTCCAAGTGAAACAATTTCTAAAATT
TGTGTTTCAAGGGAAACTATCTCAAGCGAGACGAAATTGGTTTTAAGAAAACAATCTCAAGTGAG
ATGAATTTTTTTCGAGTAAAACAATTTCTAAAATTTGTGTTTCAAGGGAAAACTGTCTCAAGCGA
GAGAAATTGGTTTTAAGAAAAACAATCTCAAATGAGATGAATTTTTGTTTCTAGTGAAAATTTGG
GTTTA
Found at i:40138 original size:90 final size:90
Alignment explanation
Indices: 39968--40140 Score: 238
Period size: 90 Copynumber: 1.9 Consensus size: 90
39958 TTAAGATAAA
* * * * *
39968 CAATTTCAAGTGAGATGAATTTTTGTTTCTAGTGAAACAATTTCTAAAATTTTTGTTTCAAGGGA
1 CAATCTCAAGTGAGATGAATTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAGAGA
* * *
40033 AATTGTGTCACGCGAGACAAAAAAC
66 AATTATCTCAAGCGAGACAAAAAAC
* * *
40058 CAATCTCAAGTGATATGAATTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCGAGATA
1 CAATCTCAAGTGAGATGAATTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAGAGA
*
40123 AATTATCTTAAGCGAGAC
66 AATTATCTCAAGCGAGAC
40141 GAAATTGGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 71 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (90 bp):
CAATCTCAAGTGAGATGAATTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAGAGA
AATTATCTCAAGCGAGACAAAAAAC
Found at i:40138 original size:295 final size:297
Alignment explanation
Indices: 39782--40316 Score: 756
Period size: 295 Copynumber: 1.8 Consensus size: 297
39772 TTGAAATAAT
** * * * *
39782 TTTTTGTTTCTTGTGAAACAATTTTTAAAATTTGTTTTTCAAAGAAAATTGTCTCAAGCGAGACA
1 TTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAAGAAAATTATCTCAAGCGAGACA
* * *** *
39847 AAATTGATTTTAAGAAAAATAATCTCAAGTGGGATGAATTTTTGTTTCGAGGGAAACCGTTTTTA
66 AAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGGGAAAAAATTTGTA
* * * *
39912 AAAATTGTGTTTCAAGGG-AAACTGTGTCAAGAGAGG--AAATTTAGTTTTAAGATAAACAA-TT
131 AAAATTGTGTTTCAAGGGAAAACTGTCTCAAGAGAGGCAAAATTGA-TTTTAAGAAAAACAACCT
*
39973 TCAAGTGAGATGAATTTTTGTTTCTAGTGAAACAATTTCTAAAATTTTTGTTTCAAGGGAAATTG
195 T-AAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTTTGTTTCAAGGGAAATTG
40038 TGTCACGCGAGACAAAAAACCAATCTCAAGTGATATGAA
259 TGTCACGCGAGACAAAAAACCAATCTCAAGTGATATGAA
* *
40077 TTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTC-GAGATAAATTATCTTAAGCGAGAC
1 TTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAAGA-AAATTATCTCAAGCGAGAC
* * * * *
40141 GAAATTGGTTTTAAGAAAAACAATCTTAAGTGAGATGAATTTTTGTTTTGAGTGAAAAAATTTGT
65 AAAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGGGAAAAAATTTGT
* * *
40206 AAAATTTGTGTTTCAAGGGAAAAGTGTCTCAAGTGAGGCAAAATTGATTTTAAGAAAAACAACCT
130 AAAAATTGTGTTTCAAGGGAAAACTGTCTCAAGAGAGGCAAAATTGATTTTAAGAAAAACAACCT
*
40271 TAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTTTAAAATTT
195 TAAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTT
40317 GTGCAACAAT
Statistics
Matches: 207, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
294 3 0.01
295 124 0.60
296 15 0.07
297 57 0.28
298 8 0.04
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (297 bp):
TTTTTGTTTCGAGCGAAACAATTTCTAAAATTTGTGTTTCAAAGAAAATTATCTCAAGCGAGACA
AAATTGATTTTAAGAAAAACAATCTCAAGTGAGATGAATTTTTGTTTCGAGGGAAAAAATTTGTA
AAAATTGTGTTTCAAGGGAAAACTGTCTCAAGAGAGGCAAAATTGATTTTAAGAAAAACAACCTT
AAGTGAGATGAATTTTTGTTTCGAGTGAAACAATTTCTAAAATTTTTGTTTCAAGGGAAATTGTG
TCACGCGAGACAAAAAACCAATCTCAAGTGATATGAA
Found at i:44195 original size:32 final size:32
Alignment explanation
Indices: 44159--44219 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
44149 CCCAAGTGTG
44159 TACCTTAGG-ACCTAAGAGCCTACCAAAGGAAA
1 TACCTT-GGCACCTAAGAGCCTACCAAAGGAAA
* * *
44191 TACCTTGGCGCCTCAGAGCCTACCCAAGG
1 TACCTTGGCACCTAAGAGCCTACCAAAGG
44220 TCACCTTAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 2 0.08
32 23 0.92
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.16
Consensus pattern (32 bp):
TACCTTGGCACCTAAGAGCCTACCAAAGGAAA
Found at i:45325 original size:27 final size:27
Alignment explanation
Indices: 45264--45326 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
45254 TATGGCTTGG
*
45264 GGATATTTTAGGTCATTTCATACTTTA
1 GGATATTTTAGGTCATTTCACACTTTA
* * *
45291 TGAGTATTTT-GGTTATTTCACAGTTTAA
1 GGA-TATTTTAGGTCATTTCACACTTT-A
45319 GGATATTT
1 GGATATTT
45327 CAGTCCTTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.49
Consensus pattern (27 bp):
GGATATTTTAGGTCATTTCACACTTTA
Found at i:49253 original size:27 final size:27
Alignment explanation
Indices: 49195--49284 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
49185 CAGAGCTTGG
* * * *
49195 GGGTATTTTAGGTTATTTCATACTTTAG
1 GGGTATTTTA-GTTATTTCGTAGTTAAA
49223 GGGTATTTTAGTTATTTCGTAGTTAAA
1 GGGTATTTTAGTTATTTCGTAGTTAAA
* * *
49250 GGGTATTTCAATCATTTCGTAGTTAAA
1 GGGTATTTTAGTTATTTCGTAGTTAAA
49277 GGGTATTT
1 GGGTATTT
49285 CAATCATTTC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 45 0.82
28 10 0.18
ACGTcount: A:0.24, C:0.07, G:0.22, T:0.47
Consensus pattern (27 bp):
GGGTATTTTAGTTATTTCGTAGTTAAA
Found at i:49285 original size:27 final size:27
Alignment explanation
Indices: 49236--49294 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
49226 TATTTTAGTT
49236 ATTTCGTAGTTAAAGGGTATTTCAATC
1 ATTTCGTAGTTAAAGGGTATTTCAATC
49263 ATTTCGTAGTTAAAGGGTATTTCAATC
1 ATTTCGTAGTTAAAGGGTATTTCAATC
49290 ATTTC
1 ATTTC
49295 CTTTCGTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (27 bp):
ATTTCGTAGTTAAAGGGTATTTCAATC
Found at i:50166 original size:21 final size:21
Alignment explanation
Indices: 50142--50188 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50132 TCAATAGCTG
50142 ATCAAAGACGATCAATGACCA
1 ATCAAAGACGATCAATGACCA
* ** *
50163 ATCAACGGTGGTCAATGACCA
1 ATCAAAGACGATCAATGACCA
50184 ATCAA
1 ATCAA
50189 TGGTCAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCAAAGACGATCAATGACCA
Found at i:51044 original size:26 final size:26
Alignment explanation
Indices: 51008--51076 Score: 93
Period size: 26 Copynumber: 2.7 Consensus size: 26
50998 TGGCAGTTTT
51008 TAGAAGGTCGAGTCAGCAACAGCTTC
1 TAGAAGGTCGAGTCAGCAACAGCTTC
** *
51034 TAGAAGGTCGAGTCAGCAGTAGTTTC
1 TAGAAGGTCGAGTCAGCAACAGCTTC
* *
51060 TAGAAGATCTAGTCAGC
1 TAGAAGGTCGAGTCAGC
51077 GCCCTTCTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (26 bp):
TAGAAGGTCGAGTCAGCAACAGCTTC
Found at i:55632 original size:170 final size:173
Alignment explanation
Indices: 55347--55689 Score: 640
Period size: 170 Copynumber: 2.0 Consensus size: 173
55337 TATAATACGT
55347 CACTTCCTTACCCCACTACGGTTAGGAAAATTCATTTTTCCTTGGTCATACAGGTTTTTACCGCA
1 CACTTCCTTACCCCACTACGGTTAGGAAAATTCATTTTTCCTTGGTCATACAGGTTTTTACCGCA
55412 GATTCATTAAGGATTTTTCCAAGGTGGTGCAACCATTATGCGAGTTGTTACAGAAGGATAAAACC
66 GATTCATTAAGGATTTTTCCAAGGTGGTGCAACCATTATGCGAGTTGTTACAGAAGGATAAAACC
55477 TTTAATTTTGACCAACAATACAGAGAA-AAATT-TCATTTTAA
131 TTTAATTTTGACCAACAATACAGAGAATAAATTGTCATTTTAA
55518 CACTTCCTTACCCCACTACGGTTAGGAAAATTCATTTTTTCCTTGGTCAT-CAGGTTTTTACCG-
1 CACTTCCTTACCCCACTACGGTTAGGAAAATTCA-TTTTTCCTTGGTCATACAGGTTTTTACCGC
55581 AGATTCATTAAGGATTTTTCCAAGGTGGTGCAACCATTATGCGAGTTGTTACAGAAGGATAAAAC
65 AGATTCATTAAGGATTTTTCCAAGGTGGTGCAACCATTATGCGAGTTGTTACAGAAGGATAAAAC
*
55646 CTTTAATTTTGACCAACAATACAGAGAATAATTTGTCATTTTAA
130 CTTTAATTTTGACCAACAATACAGAGAATAAATTGTCATTTTAA
55690 AGGAAAGTTG
Statistics
Matches: 168, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
170 93 0.55
171 51 0.30
172 24 0.14
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (173 bp):
CACTTCCTTACCCCACTACGGTTAGGAAAATTCATTTTTCCTTGGTCATACAGGTTTTTACCGCA
GATTCATTAAGGATTTTTCCAAGGTGGTGCAACCATTATGCGAGTTGTTACAGAAGGATAAAACC
TTTAATTTTGACCAACAATACAGAGAATAAATTGTCATTTTAA
Found at i:57701 original size:35 final size:36
Alignment explanation
Indices: 57661--57733 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 36
57651 TCACCCCCAT
*
57661 CCCTATCTCTATTACTTCCCA-TTTAATTTTAACTC
1 CCCTATCTCTATGACTTCCCATTTTAATTTTAACTC
57696 CCCTATCTCTATGACTTCCCATTTTAATTTTAACTC
1 CCCTATCTCTATGACTTCCCATTTTAATTTTAACTC
57732 CC
1 CC
57734 TTTTATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 20 0.56
36 16 0.44
ACGTcount: A:0.22, C:0.33, G:0.01, T:0.44
Consensus pattern (36 bp):
CCCTATCTCTATGACTTCCCATTTTAATTTTAACTC
Found at i:58273 original size:15 final size:15
Alignment explanation
Indices: 58253--58283 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
58243 ATCATTCGTG
58253 ACCGACAAGCTTTCC
1 ACCGACAAGCTTTCC
58268 ACCGACAAGCTTTCC
1 ACCGACAAGCTTTCC
58283 A
1 A
58284 TCCTGTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.39, G:0.13, T:0.19
Consensus pattern (15 bp):
ACCGACAAGCTTTCC
Found at i:67114 original size:17 final size:16
Alignment explanation
Indices: 67092--67194 Score: 70
Period size: 16 Copynumber: 6.6 Consensus size: 16
67082 GAAAGCAAAT
67092 TGGACTTATATCTAATA
1 TGGAC-TATATCTAATA
*
67109 TGGACTATTATTTAATA
1 TGGACTA-TATCTAATA
67126 TGGACTATA--TAATA
1 TGGACTATATCTAATA
** * * *
67140 TTTATTTTATTTAATA
1 TGGACTATATCTAATA
67156 TGGACTATA--TAATA
1 TGGACTATATCTAATA
* * * *
67170 TGCAATCTATTTAATA
1 TGGACTATATCTAATA
67186 TGGACTATA
1 TGGACTATA
67195 ATATGAAACT
Statistics
Matches: 66, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
14 21 0.32
16 25 0.38
17 20 0.30
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (16 bp):
TGGACTATATCTAATA
Found at i:67151 original size:30 final size:30
Alignment explanation
Indices: 67116--67194 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
67106 ATATGGACTA
** *
67116 TTATTTAATATGGACTATATAATATTTATT
1 TTATTTAATATGGACTATATAATATGCAAT
67146 TTATTTAATATGGACTATATAATATGCAAT
1 TTATTTAATATGGACTATATAATATGCAAT
*
67176 CTATTTAATATGGACTATA
1 TTATTTAATATGGACTATA
67195 ATATGAAACT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (30 bp):
TTATTTAATATGGACTATATAATATGCAAT
Found at i:67184 original size:16 final size:14
Alignment explanation
Indices: 67147--67206 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
67137 ATATTTATTT
*
67147 TATTTAATATGGAC
1 TATTTAATATGAAC
*
67161 TATATAATATGCAATC
1 TATTTAATATG-AA-C
*
67177 TATTTAATATGGAC
1 TATTTAATATGAAC
67191 TA--TAATATGAAAC
1 TATTTAATATG-AAC
67204 TAT
1 TAT
67207 AACATGTACT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
12 7 0.19
13 4 0.11
14 13 0.35
15 2 0.05
16 11 0.30
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (14 bp):
TATTTAATATGAAC
Found at i:69221 original size:22 final size:22
Alignment explanation
Indices: 69196--69243 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
69186 ATAAAATCCT
* * *
69196 TTTTATCTTTTTCATTTCTTTA
1 TTTTACCTTTTTCATTCCCTTA
*
69218 TTTTCCCTTTTTCATTCCCTTA
1 TTTTACCTTTTTCATTCCCTTA
69240 TTTT
1 TTTT
69244 CTCTCTGCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.10, C:0.21, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTACCTTTTTCATTCCCTTA
Found at i:69244 original size:22 final size:22
Alignment explanation
Indices: 69202--69244 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
69192 TCCTTTTTAT
* *
69202 CTTTTTCATTTCTTTATTTTCC
1 CTTTTTCATTCCCTTATTTTCC
69224 CTTTTTCATTCCCTTATTTTC
1 CTTTTTCATTCCCTTATTTTC
69245 TCTCTGCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTTTCATTCCCTTATTTTCC
Found at i:72857 original size:30 final size:30
Alignment explanation
Indices: 72824--72881 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
72814 ACGTGGCTCA
* *
72824 TTTTTATGCTCATGCCATGTTTATGCATCAT
1 TTTTTA-GCTCATGCAATGTATATGCATCAT
*
72855 TTTTTAGCTCATTCAATGTATATGCAT
1 TTTTTAGCTCATGCAATGTATATGCAT
72882 TCATAGTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (30 bp):
TTTTTAGCTCATGCAATGTATATGCATCAT
Found at i:79872 original size:11 final size:11
Alignment explanation
Indices: 79856--79882 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
79846 ATCTTATTAT
79856 CCGAAATTTTC
1 CCGAAATTTTC
79867 CCGAAATTTTC
1 CCGAAATTTTC
79878 CCGAA
1 CCGAA
79883 CTTTATCGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (11 bp):
CCGAAATTTTC
Found at i:82934 original size:26 final size:26
Alignment explanation
Indices: 82895--82979 Score: 136
Period size: 26 Copynumber: 3.3 Consensus size: 26
82885 AAGGGACTAA
*
82895 GTGTA-TACGGTGGGCACGACCTTAT
1 GTGTATTATGGTGGGCACGACCTTAT
*
82920 GTGTATTATGGTGGGCATGACCTTAT
1 GTGTATTATGGTGGGCACGACCTTAT
*
82946 GTGTATTATGGTGGGCACGACCTTGT
1 GTGTATTATGGTGGGCACGACCTTAT
82972 GTGTATTA
1 GTGTATTA
82980 GCACTTCGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
25 5 0.09
26 50 0.91
ACGTcount: A:0.19, C:0.14, G:0.32, T:0.35
Consensus pattern (26 bp):
GTGTATTATGGTGGGCACGACCTTAT
Found at i:87822 original size:54 final size:54
Alignment explanation
Indices: 87764--87890 Score: 191
Period size: 54 Copynumber: 2.4 Consensus size: 54
87754 ATTTGTTGTT
* **
87764 GTTGGTTCTTGCAAATTCAAAAATGGTTGCAACTAGTTCAAGTCATTCATTGGA
1 GTTGGTTCTTGCAAATCCAAAAATGAATGCAACTAGTTCAAGTCATTCATTGGA
* * *
87818 GTTGGTTCTTGCAAATCCTAAAATGAATGCAACTTGTTCAAGTCATTCGTTGGA
1 GTTGGTTCTTGCAAATCCAAAAATGAATGCAACTAGTTCAAGTCATTCATTGGA
*
87872 GTTGTTTCTTGCAAATCCA
1 GTTGGTTCTTGCAAATCCA
87891 GTAATGGATT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (54 bp):
GTTGGTTCTTGCAAATCCAAAAATGAATGCAACTAGTTCAAGTCATTCATTGGA
Found at i:88088 original size:54 final size:54
Alignment explanation
Indices: 88006--88130 Score: 189
Period size: 54 Copynumber: 2.3 Consensus size: 54
87996 TTGTTGAAGA
* * *
88006 TCATTCGTTGGAGTTGGTTCTTGCAAATCCATAAA-TGATTGCAACTGGTTCAAG
1 TCATTCGTTGGAGTTGGTTCTTGCAAATCAAGAAATTG-TTGCAACTAGTTCAAG
* *
88060 TCATTCGTTGGAGTTGGTTCTTTCAAATCAAGAAATTGTTGCAACTATTTCAAG
1 TCATTCGTTGGAGTTGGTTCTTGCAAATCAAGAAATTGTTGCAACTAGTTCAAG
88114 TCATTCGTTGGAGTTGG
1 TCATTCGTTGGAGTTGG
88131 AGTTGGTTCT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 63 0.97
55 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (54 bp):
TCATTCGTTGGAGTTGGTTCTTGCAAATCAAGAAATTGTTGCAACTAGTTCAAG
Found at i:88349 original size:54 final size:54
Alignment explanation
Indices: 88280--88419 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
88270 AAGATAATTC
** * * * **
88280 GTTGGAGTTTATTCTTGCAAATCCATAAATGGTTGCAACTGGTTCATGTCATTT
1 GTTGGAGTTGGTTCTTGTAAATCCAAAAATGGTTGCAACCGGTTCAAATCATTT
*
88334 GTTGGAGTTGGTTCTTGTGAATCCAAAAATGGTTGCAACCGGTTCAAATCATTT
1 GTTGGAGTTGGTTCTTGTAAATCCAAAAATGGTTGCAACCGGTTCAAATCATTT
* *
88388 GTTCGG-GTTGGTTCTTGTAAATTCAGAAATGG
1 GTT-GGAGTTGGTTCTTGTAAATCCAAAAATGG
88420 ATTGTTAGGA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 72 0.97
55 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (54 bp):
GTTGGAGTTGGTTCTTGTAAATCCAAAAATGGTTGCAACCGGTTCAAATCATTT
Found at i:88756 original size:53 final size:53
Alignment explanation
Indices: 88674--88814 Score: 167
Period size: 53 Copynumber: 2.6 Consensus size: 53
88664 TTTTGAAGAA
* * * *
88674 CATTCGTTGGAGGTGGTTCTCCAATTCCAAAAATAGTTGCAAAAT-TTTCAAGT
1 CATTCGTTGGAGTTGGTTCTACAAATCCAAAAATAGTTGC-AAATGGTTCAAGT
* * *
88727 CATTCATTGGAGTTGGTTCTACAAATCCAAAAATGGTTGCAAGTGGTTCAAGT
1 CATTCGTTGGAGTTGGTTCTACAAATCCAAAAATAGTTGCAAATGGTTCAAGT
* * *
88780 CATTCGTTGAAGTTGGTTCTTGCAAATCCAGAAAT
1 CATTCGTTGGAGTTGGTTC-TACAAATCCAAAAAT
88815 GGATGGTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
52 3 0.04
53 59 0.79
54 13 0.17
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (53 bp):
CATTCGTTGGAGTTGGTTCTACAAATCCAAAAATAGTTGCAAATGGTTCAAGT
Found at i:89058 original size:153 final size:153
Alignment explanation
Indices: 88790--89123 Score: 456
Period size: 153 Copynumber: 2.2 Consensus size: 153
88780 CATTCGTTGA
* *
88790 AGTTGGTTCTTGCAAATCCAGAAATGGATGGTCACGAGGGTGTATAAAATCCTGAAGTCTAAAAT
1 AGTTGGTTCTTGCAAAT-CAGAAATGGATGGTCACGAGGGTGTATAAAACCCTGAAGCCTAAAAT
* * *
88855 AAACAAACAAATATCAAAGATCTATATTGAACAGTCAATTGATAGAAAGAAAATCAAAACACTTA
65 AAACAAACAAATATCAAAGATCTATATTAAACAATCAATTGATAGAAAGAAAATAAAAACACTTA
*
88920 CGGTTGTTGAATATCATTCATTAG
130 CGGTTGTTGAAGATCATTCATTAG
* * * **
88944 AGTTGGTTCTTGCAAATCAAGAAATGGATTGTCATGA-GGTTTATAAAACCCT-AAGGCCTGCAA
1 AGTTGGTTCTTGCAAATC-AGAAATGGATGGTCACGAGGGTGTATAAAACCCTGAA-GCCTAAAA
* * *
89007 TAAACAAACAAATATTAAAGATCTATATTAAACAATTAATTGATAGAAAGAAAATAAAAACATTT
64 TAAACAAACAAATATCAAAGATCTATATTAAACAATCAATTGATAGAAAGAAAATAAAAACACTT
* *
89072 ACGGTTTTTGAAGATCATTTATTAG
129 ACGGTTGTTGAAGATCATTCATTAG
**
89097 TCTTGGTTCTTGCAAATTCAGAAATGG
1 AGTTGGTTCTTGCAAA-TCAGAAATGG
89124 TTGCAACTGG
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
152 2 0.01
153 122 0.77
154 35 0.22
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (153 bp):
AGTTGGTTCTTGCAAATCAGAAATGGATGGTCACGAGGGTGTATAAAACCCTGAAGCCTAAAATA
AACAAACAAATATCAAAGATCTATATTAAACAATCAATTGATAGAAAGAAAATAAAAACACTTAC
GGTTGTTGAAGATCATTCATTAG
Found at i:89144 original size:54 final size:54
Alignment explanation
Indices: 89085--89199 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
89075 GTTTTTGAAG
* * *
89085 ATCATTTATTAGTCTTGGTTCTTGCAAATTCAGAAATGGTTGCAACTGGTTCAA
1 ATCATTCATTAGACTTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAA
* * * *
89139 ATCATTCGTTGGAGTTGGTTCTTGCAAATCCAGAAATGGTTGCAATTGGTTCAA
1 ATCATTCATTAGACTTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAA
*
89193 GTCATTC
1 ATCATTC
89200 GTAGGGGTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (54 bp):
ATCATTCATTAGACTTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAA
Found at i:89200 original size:54 final size:54
Alignment explanation
Indices: 89099--89228 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
89089 TTTATTAGTC
* *
89099 TTGGTTCTTGCAAATTCAGAAATGGTTGCAACTGGTTCAAATCATTCGTTGGAG
1 TTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAAATCATTCGTAGGAG
* * *
89153 TTGGTTCTTGCAAATCCAGAAATGGTTGCAATTGGTTCAAGTCATTCGTAGGGG
1 TTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAAATCATTCGTAGGAG
* *
89207 TTAGTTCTTG-AAATCCATAAAT
1 TTGGTTCTTGCAAATCCAGAAAT
89229 TGAGTTTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 11 0.16
54 58 0.84
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (54 bp):
TTGGTTCTTGCAAATCCAGAAATGGTTGCAACTGGTTCAAATCATTCGTAGGAG
Found at i:91968 original size:34 final size:35
Alignment explanation
Indices: 91921--92010 Score: 128
Period size: 34 Copynumber: 2.6 Consensus size: 35
91911 GTTCAATTTT
91921 GATCAAGCTGGTAATTCCTTATATAGGTTCAG-ACC
1 GATCAA-CTGGTAATTCCTTATATAGGTTCAGCACC
*
91956 GATCAACTGGTAATTCCTTATATAGGTTCAGCACT
1 GATCAACTGGTAATTCCTTATATAGGTTCAGCACC
* **
91991 TATCAGTTGGTAATTCCTTA
1 GATCAACTGGTAATTCCTTA
92011 CGACCTAAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 25 0.50
35 25 0.50
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (35 bp):
GATCAACTGGTAATTCCTTATATAGGTTCAGCACC
Found at i:96859 original size:34 final size:35
Alignment explanation
Indices: 96792--96898 Score: 155
Period size: 34 Copynumber: 3.1 Consensus size: 35
96782 GATTCTGGAG
* **
96792 TATATAGGTTCAGCTCTAATCAAGCTGGTAATTCCT
1 TATATAGGTTCAGCACCGATC-AGCTGGTAATTCCT
96828 TATATAGGTTCAGC-CCGATC-GACTGGTAATTCCT
1 TATATAGGTTCAGCACCGATCAG-CTGGTAATTCCT
96862 TATATAGGTTCAGCACCGATCAGCTGGTAATTCCT
1 TATATAGGTTCAGCACCGATCAGCTGGTAATTCCT
96897 TA
1 TA
96899 CGGACCTAAG
Statistics
Matches: 66, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
33 1 0.02
34 26 0.39
35 24 0.36
36 15 0.23
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (35 bp):
TATATAGGTTCAGCACCGATCAGCTGGTAATTCCT
Found at i:98802 original size:15 final size:16
Alignment explanation
Indices: 98784--98813 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
98774 ATATAGTGAC
98784 AAGTTTT-GTAACTAA
1 AAGTTTTAGTAACTAA
98799 AAGTTTTAGTAACTA
1 AAGTTTTAGTAACTA
98814 TGACTGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (16 bp):
AAGTTTTAGTAACTAA
Found at i:100556 original size:8 final size:8
Alignment explanation
Indices: 100545--100579 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
100535 ATTTTTATCA
100545 TTTTTAAT
1 TTTTTAAT
100553 TTTTTAAT
1 TTTTTAAT
100561 TTTTTAAT
1 TTTTTAAT
**
100569 AATTTAAT
1 TTTTTAAT
100577 TTT
1 TTT
100580 AATATTTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTAAT
Found at i:100586 original size:24 final size:23
Alignment explanation
Indices: 100555--100604 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
100545 TTTTTAATTT
*
100555 TTTAAT-TTTT-TAATAATTTAAT
1 TTTAATATTTTGT-ATAATTTAAA
*
100577 TTTAATATTTTGTATATTTTAAA
1 TTTAATATTTTGTATAATTTAAA
100600 TTTAA
1 TTTAA
100605 AATAATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
23 17 0.71
24 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (23 bp):
TTTAATATTTTGTATAATTTAAA
Found at i:102116 original size:21 final size:21
Alignment explanation
Indices: 102090--102129 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
102080 TCACAATAAC
102090 ATATTAAATTTAATCAAAAAT
1 ATATTAAATTTAATCAAAAAT
102111 ATATTAAATTTAATCAAAA
1 ATATTAAATTTAATCAAAA
102130 TAAAAAGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATTAAATTTAATCAAAAAT
Found at i:108353 original size:24 final size:24
Alignment explanation
Indices: 108264--108365 Score: 98
Period size: 24 Copynumber: 4.2 Consensus size: 24
108254 TTATCCGATT
* * *
108264 TCTGATTTGAATTCTGTTTTGACA
1 TCTGATCTGAATTCTGTTCTGATA
*
108288 TCTGATCTGAAATCTGTTCTGAT-
1 TCTGATCTGAATTCTGTTCTGATA
* * *
108311 TCCTAACCTGGATTCTGTTCTGATA
1 T-CTGATCTGAATTCTGTTCTGATA
* * *
108336 TCTGATCTGAATTATGTTTTGATT
1 TCTGATCTGAATTCTGTTCTGATA
108360 TCTGAT
1 TCTGAT
108366 ATCTCCGTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
23 1 0.02
24 60 0.97
25 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.17, T:0.47
Consensus pattern (24 bp):
TCTGATCTGAATTCTGTTCTGATA
Found at i:110112 original size:17 final size:17
Alignment explanation
Indices: 110086--110120 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
110076 AATATGTTTC
110086 AATTAGTATTTTACTTT
1 AATTAGTATTTTACTTT
* *
110103 AATTATTATTTTATTTT
1 AATTAGTATTTTACTTT
110120 A
1 A
110121 GTCATGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (17 bp):
AATTAGTATTTTACTTT
Found at i:110302 original size:2 final size:2
Alignment explanation
Indices: 110295--110336 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
110285 TAAAACCAGA
110295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
110337 TGTTTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:113430 original size:20 final size:20
Alignment explanation
Indices: 113394--113447 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
113384 TTCATTACTT
*
113394 TTTTTATGTTTGT-ATTTGCA
1 TTTTTATATTT-TCATTTGCA
*
113414 TTTTTATATTTTCATTTTCA
1 TTTTTATATTTTCATTTGCA
113434 --TTTA-ATTTTCATTT
1 TTTTTATATTTTCATTT
113448 TATATTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.32
18 4 0.13
19 1 0.03
20 16 0.52
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTTATATTTTCATTTGCA
Found at i:114469 original size:19 final size:18
Alignment explanation
Indices: 114445--114481 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
114435 GAAGGAATTC
*
114445 GAGAATTTATTGATAAATG
1 GAGAATTAATTGA-AAATG
114464 GAGAATTAATTGAAAATG
1 GAGAATTAATTGAAAATG
114482 TGATCAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.46, C:0.00, G:0.22, T:0.32
Consensus pattern (18 bp):
GAGAATTAATTGAAAATG
Found at i:115729 original size:8 final size:8
Alignment explanation
Indices: 115716--115758 Score: 59
Period size: 8 Copynumber: 5.0 Consensus size: 8
115706 TTCAAATAGC
115716 AAAAAGAA
1 AAAAAGAA
115724 AAAAAGAA
1 AAAAAGAA
115732 AAAAAGAA
1 AAAAAGAA
115740 GAAAGAAGAA
1 -AAA-AAGAA
115750 AAAGAAGAA
1 AAA-AAGAA
115759 GAAGATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.48
9 12 0.36
10 5 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:115737 original size:16 final size:18
Alignment explanation
Indices: 115716--115761 Score: 69
Period size: 16 Copynumber: 2.6 Consensus size: 18
115706 TTCAAATAGC
115716 AAAAAGAA-AAA-AAGAA
1 AAAAAGAAGAAAGAAGAA
115732 AAAAAGAAGAAAGAAGAA
1 AAAAAGAAGAAAGAAGAA
115750 AAAGAAGAAGAA
1 AAA-AAGAAGAA
115762 GATAAATTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.30
17 3 0.11
18 8 0.30
19 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAGAAGAAAGAAGAA
Found at i:115743 original size:19 final size:20
Alignment explanation
Indices: 115719--115761 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
115709 AAATAGCAAA
115719 AAGAAAAAAAGAAAAA-AAG
1 AAGAAAAAAAGAAAAAGAAG
*
115738 AAG-AAAGAAGAAAAAGAAG
1 AAGAAAAAAAGAAAAAGAAG
115757 AAGAA
1 AAGAA
115762 GATAAATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 11 0.52
19 9 0.43
20 1 0.05
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAGAAAAAAAGAAAAAGAAG
Found at i:115760 original size:15 final size:16
Alignment explanation
Indices: 115716--115763 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
115706 TTCAAATAGC
*
115716 AAAAAGAAAAAAAGAA-
1 AAAAAG-AAGAAAGAAG
115732 AAAAAGAAGAAAGAAG
1 AAAAAGAAGAAAGAAG
115748 AAAAAGAAG-AAGAAG
1 AAAAAGAAGAAAGAAG
115763 A
1 A
115764 TAAATTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 15 0.50
16 15 0.50
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (16 bp):
AAAAAGAAGAAAGAAG
Found at i:118085 original size:54 final size:54
Alignment explanation
Indices: 118003--118115 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
117993 GCTTCATTGG
* * * *
118003 CGAACATCTGAGCATAAGCCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTA
1 CGAACATCTGAGCAGAAGCCACAAGAAAGGATGAATGTATTGTCAAAAGTTTTA
118057 CGAACATCT-AGACAGAAGCCACAAGAAAGGATGAATGTATTGTCAAAAGTTTTA
1 CGAACATCTGAG-CAGAAGCCACAAGAAAGGATGAATGTATTGTCAAAAGTTTTA
118111 CGAAC
1 CGAAC
118116 TAGTTATTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.04
54 52 0.96
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (54 bp):
CGAACATCTGAGCAGAAGCCACAAGAAAGGATGAATGTATTGTCAAAAGTTTTA
Found at i:118505 original size:22 final size:22
Alignment explanation
Indices: 118479--118579 Score: 186
Period size: 22 Copynumber: 4.6 Consensus size: 22
118469 TACATCTACA
118479 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
118501 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
118523 CTCTTCAAAGATGATAGATT-T
1 CTCTTCAAAGATGATAGATTCT
118544 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
*
118566 CTTTTCAAAGATGA
1 CTCTTCAAAGATGA
118580 AAGCTTTATT
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
21 21 0.27
22 56 0.73
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (22 bp):
CTCTTCAAAGATGATAGATTCT
Found at i:118561 original size:43 final size:44
Alignment explanation
Indices: 118479--118579 Score: 186
Period size: 43 Copynumber: 2.3 Consensus size: 44
118469 TACATCTACA
118479 CTCTTCAAAGATGATAGATTCTCTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCTCTCTTCAAAGATGATAGATTCT
118523 CTCTTCAAAGATGATAGATT-TCTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCTCTCTTCAAAGATGATAGATTCT
*
118566 CTTTTCAAAGATGA
1 CTCTTCAAAGATGA
118580 AAGCTTTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
43 36 0.64
44 20 0.36
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (44 bp):
CTCTTCAAAGATGATAGATTCTCTCTTCAAAGATGATAGATTCT
Found at i:119273 original size:45 final size:45
Alignment explanation
Indices: 119209--119333 Score: 196
Period size: 45 Copynumber: 2.8 Consensus size: 45
119199 CTATTTCCCA
*
119209 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCTTTCGGGT
1 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
*
119254 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
** * *
119299 CATCCATAAGACCTACAGTGCAGGATGTTTTCAAA
1 CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAA
119334 AATCCTTCAG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (45 bp):
CATCTGTAAGACCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
Found at i:119451 original size:77 final size:77
Alignment explanation
Indices: 119276--119487 Score: 273
Period size: 77 Copynumber: 2.8 Consensus size: 77
119266 CTTCAGTGCA
* * * *
119276 TGATGTTTTCAAAGCCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTC-AAAAATCCT
1 TGATGTTTTCAAAACCTTTGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
119340 TCAGGAGCTTTT
66 TCAGGAGCTTTT
* * * *
119352 TGATGTTTTCAAGACCTTTGGGTCATCCGTAAAACCTGCAGTGCAGGAAGTTTTCAAAAAAACCT
1 TGATGTTTTCAAAACCTTTGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
* *
119417 TCGGGAGTTTTT
66 TCAGGAGCTTTT
* * * * * *
119429 TGATATTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCGGTGCATGATGTTTTCAAAA
1 TGATGTTTTCAAAACCTTTGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAA
119488 CCTTCGGGTC
Statistics
Matches: 116, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
76 48 0.41
77 68 0.59
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (77 bp):
TGATGTTTTCAAAACCTTTGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
TCAGGAGCTTTT
Found at i:119485 original size:45 final size:45
Alignment explanation
Indices: 119429--119532 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
119419 GGGAGTTTTT
* * ** * *
119429 TGATATTTTCAAAACCTTTGGGTCATCTGTAAGCCCT-TCGGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTAT-AGTGCA
119474 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTATAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTATAGTGCA
*
119519 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
119533 AGCCTTCGAG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTATAGTGCA
Found at i:119499 original size:122 final size:122
Alignment explanation
Indices: 119352--119655 Score: 394
Period size: 121 Copynumber: 2.5 Consensus size: 122
119342 AGGAGCTTTT
* * * * *
119352 TGATGTTTTCAAGACCTTTGGGTCATCCGTAAAACCTGCAGTGCAGGAAGTTTTCAAAAAAACCT
1 TGATGTTTTCAAAACCTTCGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
* * * * * *
119417 TCGGGAGTTTTTTGATATTTTCAAAACCTTTGGGTCATCTGTAAGCCCTTCGGTGCA
66 TCGAGAGCTTTTTGATATTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
* * *
119474 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTATAGTGCAGGATGTTTTC-AAAAAGCCT
1 TGATGTTTTCAAAACCTTCGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
* *
119538 TCGAGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
66 TCGAGAGCTTTTTGATATTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
* * * * *
119595 TGATGTTTTTAAAAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAA
1 TGATG-TTTTCAAAA-CCTTCGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAA
119656 CCTTTGGGTC
Statistics
Matches: 156, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
121 62 0.40
122 56 0.36
123 35 0.22
124 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (122 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCGTAAGACCTACAGTGCAGGATGTTTTCAAAAAAACCT
TCGAGAGCTTTTTGATATTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
Found at i:119561 original size:76 final size:76
Alignment explanation
Indices: 119474--119615 Score: 230
Period size: 76 Copynumber: 1.9 Consensus size: 76
119464 CTTCGGTGCA
*
119474 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTATAGTGCAGGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
119539 CGAGAGCTTTT
66 CGAGAGCTTTT
* ** * *
119550 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTTAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
119615 C
66 C
119616 AGGACATCTG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 60 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (76 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
CGAGAGCTTTT
Found at i:119575 original size:198 final size:198
Alignment explanation
Indices: 119231--119609 Score: 593
Period size: 198 Copynumber: 1.9 Consensus size: 198
119221 CTTCAGTGCA
* * *
119231 TGATGTTTTCAAAGCTTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
1 TGATATTTTCAAACCTTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
*
119296 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAATCCTTCAGGAGCTTTTTGATGTTTT
66 GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATGTTTT
* *
119361 CAAGACCTTTGGGTCATCCGTAAAACCTGCAGTGCAGGAAGTTTTCAAAAAAACCTTCGGGAGTT
131 CAAGACCTTCGGGTCATCCGTAAAACCTACAGTGCAGGAAGTTTTCAAAAAAACCTTCGGGAGTT
119426 TTT
196 TTT
*
119429 TGATATTTTCAAAACCTTT-GGGTCATCTGTAAGCCCTTCGGTGCATGATGTTTTCAAAACCTTC
1 TGATATTTTC-AAACCTTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTC
*
119493 GGGTCATCCATAAGACCTATAGTGCAGGATGTTTTCAAAAAGCCTTC-GAGAGCTTTTTGATGTT
65 GGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAG-GAGCTTTTTGATGTT
* * * * *
119557 TTCAA-AGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTTAAAAA
129 TTCAAGA-CCTTCGGGTCATCCGTAAAACCTACAGTGCAGGAAGTTTTCAAAAA
119610 GCCTTCAGGA
Statistics
Matches: 165, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
197 2 0.01
198 156 0.95
199 7 0.04
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (198 bp):
TGATATTTTCAAACCTTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCG
GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATGTTTT
CAAGACCTTCGGGTCATCCGTAAAACCTACAGTGCAGGAAGTTTTCAAAAAAACCTTCGGGAGTT
TTT
Found at i:119624 original size:47 final size:47
Alignment explanation
Indices: 119560--119711 Score: 200
Period size: 47 Copynumber: 3.3 Consensus size: 47
119550 TGATGTTTTC
* *
119560 AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTTAA
1 AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTTAA
*
119607 AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATG-TTTTCA
1 AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTTAA
** * ** * *
119653 AAA-CCTTTGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAA
1 AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTTAA
119699 AAAGCCTTCAGGA
1 AAAGCCTTCAGGA
119712 ACTTTTTGAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
45 30 0.34
46 15 0.17
47 44 0.49
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTTAA
Found at i:119692 original size:45 final size:45
Alignment explanation
Indices: 119550--119700 Score: 212
Period size: 45 Copynumber: 3.3 Consensus size: 45
119540 GAGAGCTTTT
*
119550 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
* * *
119595 TGATGTTTTTAAAAAGCCTTCAGGACATCTGTAAGACCTACAGTGCA
1 TGATG-TTTTCAAAA-CCTTCGGGTCATCTGTAAGACCTACAGTGCA
* **
119642 TGATGTTTTCAAAACCTTTGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
*
119687 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
119701 AGCCTTCAGG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
45 44 0.47
46 15 0.16
47 34 0.37
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGCA
Found at i:119730 original size:168 final size:166
Alignment explanation
Indices: 119429--119830 Score: 576
Period size: 168 Copynumber: 2.4 Consensus size: 166
119419 GGGAGTTTTT
* * * * * *
119429 TGATATTTTCAAAACCTTTGGGT-CATCTGTAAGCCCTTCGGTGCATGATGTTTTCAAAACCTTC
1 TGATTTTTTAAAAACC-TTCGGTACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTC
* *
119493 GGGTCATCCATAAGACCTATAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAGCTTTTTGATGTTT
65 GGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAACTTTTTGATGTTT
119558 TCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
130 TCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
119595 TGATGTTTTTAAAAAGCCTTCAGG-ACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCT
1 TGAT-TTTTTAAAAA-CCTTC-GGTACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCT
*
119659 TTGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTC-AGGAACTTTTTGATG
63 TCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGA-GAACTTTTTGATG
119723 TTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
127 TTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
* * * ** * *
119763 TGATTTTTTCAAAACTTTCGGTTCATCCATAAGACCTACAGTGCAAGATGTTTTTAAAAAGCCTT
1 TGATTTTTTAAAAACCTTCGGTACATCTGTAAGACCTACAGTGCATGATG-TTTTCAAAA-CCTT
119828 CGG
64 CGG
119831 AGATTTTTGA
Statistics
Matches: 211, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
165 2 0.01
166 32 0.15
167 28 0.13
168 149 0.71
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (166 bp):
TGATTTTTTAAAAACCTTCGGTACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTCG
GGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGAGAACTTTTTGATGTTTT
CAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
Found at i:119789 original size:45 final size:45
Alignment explanation
Indices: 119718--119830 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
119708 AGGAACTTTT
* * **
119718 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
1 TGATTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
119763 TGATTTTTTCAAAACTTTCGGTTCATCCATAAGACCTACAGTGCA
1 TGATTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
119808 AGATGTTTTTAAAAAGCCTTCGG
1 TGAT-TTTTTCAAAA-CCTTCGG
119831 AGATTTTTGA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 42 0.74
46 9 0.16
47 6 0.11
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATTTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
Found at i:119892 original size:120 final size:121
Alignment explanation
Indices: 119607--119920 Score: 490
Period size: 121 Copynumber: 2.6 Consensus size: 121
119597 ATGTTTTTAA
* *
119607 AAAGCCTTCAGGACATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTT-GGGTCATCCA
1 AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAA-CTTTCGGGTCATCCA
*
119671 TAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAACTTTTTGATGTTTTC
65 TAAGACCTACAGTGCAAGATGTTTTCAAAAAGCCTTCAGGAACTTTTTGATGTTTTC
* *
119728 AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATTTTTTCAAAACTTTCGGTTCATCCAT
1 AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACTTTCGGGTCATCCAT
*
119793 AAGACCTACAGTGCAAGATGTTTTTAAAAAGCCTTC-GGAGA-TTTTTGATGTTTTC
66 AAGACCTACAGTGCAAGATGTTTTCAAAAAGCCTTCAGGA-ACTTTTTGATGTTTTC
* * * * *
119848 AAAGTCTTCGGGTCATTTGTAAGACCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCATTCTT
1 AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACTTTCGGGTCATCCAT
119913 AAGACCTA
66 AAGACCTA
119921 TGGACAGAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
120 87 0.49
121 91 0.51
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (121 bp):
AAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCATGATGTTTTCAAAACTTTCGGGTCATCCAT
AAGACCTACAGTGCAAGATGTTTTCAAAAAGCCTTCAGGAACTTTTTGATGTTTTC
Found at i:121328 original size:17 final size:17
Alignment explanation
Indices: 121303--121336 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
121293 ATATGTTTCG
121303 ATTAGTATTTTACTTTA
1 ATTAGTATTTTACTTTA
* *
121320 ATTATTATTTTATTTTA
1 ATTAGTATTTTACTTTA
121337 GTCATGCTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (17 bp):
ATTAGTATTTTACTTTA
Found at i:124008 original size:17 final size:18
Alignment explanation
Indices: 123975--124008 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
123965 TCAATTCTGT
*
123975 CTTATTATTTAATTCCAA
1 CTTATCATTTAATTCCAA
123993 CTTATCATTT-ATTCCA
1 CTTATCATTTAATTCCA
124009 GACCTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTATCATTTAATTCCAA
Found at i:127817 original size:24 final size:24
Alignment explanation
Indices: 127785--127834 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
127775 ATGTCGATAG
127785 CTGCACTGGTACAATTCTTTTAAC
1 CTGCACTGGTACAATTCTTTTAAC
127809 CTGCACTGGTACAATTCTTTTAAC
1 CTGCACTGGTACAATTCTTTTAAC
127833 CT
1 CT
127835 ACAATGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (24 bp):
CTGCACTGGTACAATTCTTTTAAC
Found at i:129714 original size:17 final size:18
Alignment explanation
Indices: 129681--129714 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
129671 TCAATTCTGT
*
129681 CTTATTATTTAATTCCAA
1 CTTATCATTTAATTCCAA
129699 CTTATCATTT-ATTCCA
1 CTTATCATTTAATTCCA
129715 GACCTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTATCATTTAATTCCAA
Found at i:135136 original size:28 final size:27
Alignment explanation
Indices: 135104--135172 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
135094 TATTTATCTT
135104 TTTAATTTTGTAAAAAAAATAATATAAA
1 TTTAATTTTGTAAAAAAAAT-ATATAAA
*
135132 TTTAAAATTTT-TAAAGAAAATATATAAA
1 TTT--AATTTTGTAAAAAAAATATATAAA
135160 -TTAATTATTGTAA
1 TTTAATT-TTGTAA
135173 TATTATAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
25 4 0.11
26 2 0.06
27 5 0.14
28 10 0.28
29 9 0.25
30 6 0.17
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (27 bp):
TTTAATTTTGTAAAAAAAATATATAAA
Found at i:135368 original size:15 final size:16
Alignment explanation
Indices: 135340--135370 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
135330 ACAATATTCT
135340 CAGTAATCTTTTTTCC
1 CAGTAATCTTTTTTCC
135356 CAGTAAT-TTTTTTCC
1 CAGTAATCTTTTTTCC
135371 TACTGATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52
Consensus pattern (16 bp):
CAGTAATCTTTTTTCC
Found at i:141271 original size:29 final size:28
Alignment explanation
Indices: 141217--141290 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 28
141207 ATTGTTTTTA
* *
141217 TTTATTTTAATTTTGGCTCATTATTTTGAT
1 TTTATTTT-ATTTT-GATCATGATTTTGAT
**
141247 TTTATTTTATTTTGATCACTGATTTTTCT
1 TTTATTTTATTTTGATCA-TGATTTTGAT
141276 TTCTA-TTTATTTTGA
1 TT-TATTTTATTTTGA
141291 ATCTGATGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
28 4 0.11
29 24 0.63
30 10 0.26
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65
Consensus pattern (28 bp):
TTTATTTTATTTTGATCATGATTTTGAT
Found at i:144219 original size:59 final size:59
Alignment explanation
Indices: 144156--144745 Score: 437
Period size: 59 Copynumber: 10.0 Consensus size: 59
144146 TTACCAAATG
* *
144156 GCACTATATGTGCTAAAATGATAAGGAGATCATACTGAATGTATGAATTTCCATATGGA
1 GCACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
* * * *
144215 GCACTGA-GTGTTCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGA
1 GCACT-ATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
* *
144274 GCACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTACATATGGA
1 GCACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
* * *
144333 GCACTGA-GTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAGG-
1 GCACT-ATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATAT-GGA
* * * * * ***
144392 GCATTATATGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGAAAAA
1 GCACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
* * * * * * *
144451 GCACTA-AGGGTGCTAAAAGGATAAAGAAATCATACT-AACGTATTGATTTTCATAT-AA
1 GCACTATA-TGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
* * * * *
144508 GGCACT-TCTTGTGCTAAAAATGGTAAAGAGATCATACT-AATGGTATGGATTCTCGA-ATAGG-
1 -GCACTAT-ATGTGCT-AAAATGATAAGGAAATCATACTGAAT-GTATGGATT-TCCATAT-GGA
* * *
144569 GCACTTTATGTGCTAAAAATGGTAAAGG-AATCATACT-AATGGTATGGATTCTCGA-ATAGG-
1 GCACTATATGTGCT-AAAATGAT-AAGGAAATCATACTGAAT-GTATGGATT-TCCATAT-GGA
* * * * * * *
144629 GCACT-TCGTGTGCTAAAATAAGAAGGAAATCATA-TTAA-GTATATGATATTCCAGATAGA
1 GCACTAT-ATGTGCTAAAATGATAAGGAAATCATACTGAATGTAT-GGAT-TTCCATATGGA
* * * * **
144688 GCACTGACA-GTGCTAATATTATAAGGAAATTATAC-GAATTGTATAAATTTCC-TATGGA
1 GCACT-ATATGTGCTAAAATGATAAGGAAATCATACTGAA-TGTATGGATTTCCATATGGA
144746 ATGTATGGAT
Statistics
Matches: 433, Mismatches: 69, Indels: 59
0.77 0.12 0.11
Matches are distributed among these distances:
57 6 0.01
58 42 0.10
59 297 0.69
60 78 0.18
61 10 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.30
Consensus pattern (59 bp):
GCACTATATGTGCTAAAATGATAAGGAAATCATACTGAATGTATGGATTTCCATATGGA
Found at i:144298 original size:118 final size:118
Alignment explanation
Indices: 144155--144717 Score: 495
Period size: 118 Copynumber: 4.8 Consensus size: 118
144145 ATTACCAAAT
* *
144155 GGCACTATATGTGCTAAAATGATAAGGAGATCATACTGAATGTATGAATTTCCATATGGAGCACT
1 GGCACTATATGTGCTAAAATGATAAGGAGATCATACTGAGTGTATGGATTTCCATATGGAGCACT
* * *
144220 GAGTGTTCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATAT-G
66 GAGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAG
* *
144272 GAGCACTATATGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTACATATGGAGCAC
1 G-GCACTATATGTGCTAAAATGATAAGGAGATCATACTGAGTGTATGGATTTCCATATGGAGCAC
144337 TGAGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAG
65 TGAGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAG
* * * ***
144391 GGCATTATATGTGCTAAAATGGTAAGG-GAATCATACTGAGTGTATGGATTTCCAGAAAAAGCAC
1 GGCACTATATGTGCTAAAATGATAAGGAG-ATCATACTGAGTGTATGGATTTCCATATGGAGCAC
* * * * * ** * * *
144455 TAAGGGTGCTAAAAGGATAAAGAAATCATACT-AACGTATTGATTTTCATATAA
65 TGAGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAG
* * * * *
144508 GGCACT-TCTTGTGCTAAAAATGGTAAAGAGATCATACT-AATGGTATGGATTCTCGA-ATAGG-
1 GGCACTAT-ATGTGCT-AAAATGATAAGGAGATCATACTGAGT-GTATGGATT-TCCATAT-GGA
* * * * *
144569 GCACTTTA-TGTGCTAAAAATGGTAAAGG-AATCATACT-AATGGTATGGATTCTCGA-ATAG
61 GCAC-TGAGTGTGCT-AAAATGAT-AAGGAAATCATATTGAAT-ATATGGATT-TCCATATAG
* * * * * * * * *
144628 GGCACT-TCGTGTGCTAAAATAAGAAGGAAATCATATTAAGTATAT-GATATTCCAGATAGAGCA
1 GGCACTAT-ATGTGCTAAAATGATAAGGAGATCATACTGAGTGTATGGAT-TTCCATATGGAGCA
** * *
144691 CTGACAGTGCTAATATTATAAGGAAAT
64 CTGAGTGTGCTAAAATGATAAGGAAAT
144718 TATACGAATT
Statistics
Matches: 367, Mismatches: 59, Indels: 39
0.79 0.13 0.08
Matches are distributed among these distances:
116 1 0.00
117 34 0.09
118 244 0.66
119 56 0.15
120 30 0.08
121 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (118 bp):
GGCACTATATGTGCTAAAATGATAAGGAGATCATACTGAGTGTATGGATTTCCATATGGAGCACT
GAGTGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAG
Found at i:144466 original size:177 final size:177
Alignment explanation
Indices: 144164--144618 Score: 496
Period size: 177 Copynumber: 2.6 Consensus size: 177
144154 TGGCACTATA
* * * *
144164 TGTGCTAAAATGATAAGGAGATCATACTGAATGTATGAATTTCCATAT-GGAGCACTGA-GTGTT
1 TGTGCTAAAATGATAAGGAGATCATACTGAATGTATGGATTTCCATATAGG-GCACTTATATGTG
* * * * *** *
144227 CTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCATATGGAGCACTATATGTGCTAAAA
65 CTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGAAAAAGCACTATAGGTGCTAAAA
* * ** *
144292 TGATAAGGAAATCATACTGAGTGTATGGATTTACATAT-GGAGCACTGAG
130 GGATAAAGAAATCATACT-AACGTATGGATTTACATATAAG-GCACTGAG
* * *
144341 TGTGCTAAAATGATAAGGAAATCATATTGAATATATGGATTTCCATATAGGGCA-TTATATGTGC
1 TGTGCTAAAATGATAAGGAGATCATACTGAATGTATGGATTTCCATATAGGGCACTTATATGTGC
144405 TAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGAAAAAGCACTA-AGGGTGCTAAAA
66 TAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGAAAAAGCACTATA-GGTGCTAAAA
* * ***
144469 GGATAAAGAAATCATACTAACGTATTGATTTTCATATAAGGCACTTCT
130 GGATAAAGAAATCATACTAACGTATGGATTTACATATAAGGCACTGAG
* * *
144517 TGTGCTAAAAATGGTAAAGAGATCATACT-AATGGTATGGATTCTCGA-ATAGGGCACTT-TATG
1 TGTGCT-AAAATGATAAGGAGATCATACTGAAT-GTATGGATT-TCCATATAGGGCACTTATATG
* *
144579 TGCTAAAAATGGTAAAGGAATCATACT-AATGGTATGGATT
63 TGCT-AAAATGGTAAGGGAATCATACTGAGT-GTATGGATT
144619 CTCGAATAGG
Statistics
Matches: 235, Mismatches: 33, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
176 32 0.14
177 166 0.71
178 37 0.16
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (177 bp):
TGTGCTAAAATGATAAGGAGATCATACTGAATGTATGGATTTCCATATAGGGCACTTATATGTGC
TAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGAAAAAGCACTATAGGTGCTAAAAG
GATAAAGAAATCATACTAACGTATGGATTTACATATAAGGCACTGAG
Found at i:144585 original size:60 final size:59
Alignment explanation
Indices: 144460--144646 Score: 231
Period size: 60 Copynumber: 3.2 Consensus size: 59
144450 AGCACTAAGG
* * * * *
144460 GTGCT-AAAA-GGATAAAGAAATCATACTAA-CGTATTGATTTTC-ATATAAGGCACTTCTT
1 GTGCTAAAAATGG-TAAAGAGATCATACTAATGGTATGGATTCTCGA-ATAGGGCACTT-TT
144518 GTGCTAAAAATGGTAAAGAGATCATACTAATGGTATGGATTCTCGAATAGGGCACTTTAT
1 GTGCTAAAAATGGTAAAGAGATCATACTAATGGTATGGATTCTCGAATAGGGCACTTT-T
*
144578 GTGCTAAAAATGGTAAAG-GAATCATACTAATGGTATGGATTCTCGAATAGGGCACTTCGT
1 GTGCTAAAAATGGTAAAGAG-ATCATACTAATGGTATGGATTCTCGAATAGGGCACTT-TT
144638 GTGCTAAAA
1 GTGCTAAAA
144647 TAAGAAGGAA
Statistics
Matches: 116, Mismatches: 6, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
58 5 0.04
59 22 0.19
60 88 0.76
61 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (59 bp):
GTGCTAAAAATGGTAAAGAGATCATACTAATGGTATGGATTCTCGAATAGGGCACTTTT
Found at i:144862 original size:44 final size:44
Alignment explanation
Indices: 144799--145063 Score: 431
Period size: 44 Copynumber: 6.0 Consensus size: 44
144789 TCAGTGATGC
144799 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
144843 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
*
144887 AAATTATAGTAAGTATATTGGTAAAATAAGTTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
*
144931 AAATTATAGTAAGTATATTAGTAAAATAAGCTTACGAGCTTATG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
* * * * *
144975 GAATAATGGTAAGTATATTGGTAAAATAAACTTACGAGCTTAGG
1 AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
* * *
145019 GATTTAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
1 AAATT-ATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
145064 GATTAAATGG
Statistics
Matches: 207, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
44 170 0.82
45 37 0.18
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.34
Consensus pattern (44 bp):
AAATTATAGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATG
Found at i:145499 original size:21 final size:21
Alignment explanation
Indices: 145473--145512 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
145463 TTCAGAAATT
*
145473 ACTGTAGCAGTGCATCGATGC
1 ACTGTAGCAGTCCATCGATGC
145494 ACTGTAGCAGTCCATCGAT
1 ACTGTAGCAGTCCATCGAT
145513 ATATTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (21 bp):
ACTGTAGCAGTCCATCGATGC
Found at i:149475 original size:30 final size:29
Alignment explanation
Indices: 149373--149475 Score: 75
Period size: 30 Copynumber: 3.5 Consensus size: 29
149363 AAGCATGAAC
* * *
149373 TTAAAGGATTAAAATAACATAAACAGAAAG
1 TTAAAGGACTAAAATAACA-AAACAAAAAA
**
149403 TTAAGAGG-CTAAAATAGTAAAA-AAAAAA
1 TTAA-AGGACTAAAATAACAAAACAAAAAA
* * * * *
149431 TTAAAAGACCAAAATACCACAAACATAAAT
1 TTAAAGGACTAAAATAACA-AAACAAAAAA
149461 TTAAAGGACTAAAAT
1 TTAAAGGACTAAAAT
149476 GTCAAAAATG
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
27 2 0.04
28 16 0.29
29 6 0.11
30 29 0.52
31 3 0.05
ACGTcount: A:0.60, C:0.10, G:0.11, T:0.19
Consensus pattern (29 bp):
TTAAAGGACTAAAATAACAAAACAAAAAA
Found at i:151110 original size:129 final size:128
Alignment explanation
Indices: 150868--151371 Score: 597
Period size: 129 Copynumber: 3.9 Consensus size: 128
150858 CATCTTTAGG
* * * * *
150868 AAGGGTGATAACTCGGTTCCTACGCGATGAGGACGACTGGCTATCAAAGGGGTGACACGGTTCCT
1 AAGGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATC-AAGGGTTGACACGGTTCCT
* *
150933 ACGTGATAAGGAGATCAGGTCGGGTGATGACACAGTTCCTACGCGATGAGGACGGAAGTTCATCT
65 ACGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGCGATGAGGACGGAAG-TCATCT
* *
150998 AAGGGTGATAACACGGTTCCTACATGATGAGGACGGCTGGTTATCAAAGGG-TGACACGGCTCCT
1 AAGGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATC-AAGGGTTGACACGGTTCCT
* *
151062 ACG-GAATGAGGAGATCAGGTCGGGTGATGACACGGTTCTTACGTGATGAGGAC-GACAGGTCAT
65 ACGTG-ATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGCGATGAGGACGGA-A-GTCAT
151125 CT
127 CT
* * * * ** *
151127 AAGGGTGATAATACGATCCCTACGTGATGAGGACGGATGGTTATCTGGGGTTAACACGGTTCCTA
1 AAGGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCAAGGGTTGACACGGTTCCTA
* * * * ** *
151192 CGTGATGAGGAAATCAGGTCGGGTAATGACAC-TTTCCTATGCGATGAGGACAACAAGCCATCT
66 CGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGCGATGAGGAC-GGAAGTCATCT
* * * *
151255 AAGGGTTATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATC-TGGGTTGACACAGTTCCTA
1 AAGGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCAAGGGTTGACACGGTTCCTA
* * * * *
151319 CATAATGAGGAGATCTGGTC-GGTGATGACATGGTTCCTACGTGATGAGGACGG
66 CGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGCGATGAGGACGG
151372 TTGTTTATCT
Statistics
Matches: 319, Mismatches: 47, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
126 9 0.03
127 48 0.15
128 66 0.21
129 147 0.46
130 49 0.15
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (128 bp):
AAGGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCAAGGGTTGACACGGTTCCTA
CGTGATGAGGAGATCAGGTCGGGTGATGACACGGTTCCTACGCGATGAGGACGGAAGTCATCT
Found at i:151202 original size:43 final size:44
Alignment explanation
Indices: 150870--151641 Score: 190
Period size: 46 Copynumber: 18.1 Consensus size: 44
150860 TCTTTAGGAA
* * * *
150870 GGGTGATAACTCGGTTCCTACGCGATGAGGAC-GACTGGCTATCAAA
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGA-TGGTTATC--T
* *
150916 GGG-G-TGACACGGTTCCTACGTGATAAGGA--GATCAGG---TC-
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGAT--GGTTATCT
* * * *
150954 GGGTGATGACACAGTTCCTACGCGATGAGGACGGA-AGTTCATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTT-ATCT
* * *
150998 AAGGGTGATAACACGGTTCCTACATGATGAGGACGGCTGGTTATCAAA
1 --GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATC--T
*
151046 GGGTG---ACACGGCTCCTACG-GAATGAGGA--GATCAGG---TC-
1 GGGTGATAACACGGTTCCTACGTG-ATGAGGACGGAT--GGTTATCT
* * * *
151083 GGGTGATGACACGGTTCTTACGTGATGAGGAC-GACAGGTCATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGA-TGGTTATCT
* * *
151127 AAGGGTGATAATACGATCCCTACGTGATGAGGACGGATGGTTATCT
1 --GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* *
151173 GGG-GTTAACACGGTTCCTACGTGATGAGGA--AATCAGG---TC-
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGAT--GGTTATCT
* * * * * * ** **
151212 GGGTAATGACAC-TTTCCTATGCGATGAGGAC-AACAAGCCATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGA-TGGTTATCT
* * *
151255 AAGGGTTATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCT
1 --GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* * * * * **
151301 GGGT--TGACACAGTTCCTACATAATGAGGA--GAT-CTGGTC-
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* * * *
151339 -GGTGATGACATGGTTCCTACGTGATGAGGACGGTTGTTTATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* * * * * * **
151382 GGGT--TGACACAGCTCCTACATAATGAGGA--GAT-CTGGTC-
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* ** * ** * * **
151420 GGGTGATGACACGACTCATACGCAATGAAGA-GTTATGGCCATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACG-GATGGTTATCT
* * *
151464 AAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGATTATCT
1 --GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
* *** * * **
151510 GGGT--TGACACAACTCCTACAT-ATTGAGGA--GAT-CTGGTC-
1 GGGTGATAACACGGTTCCTACGTGA-TGAGGACGGATGGTTATCT
* ** *
151548 GGGTGATGACACGGTTCCTACGTGATGAGGACGGCA-GGCCATCCAA
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGG-ATGGTTAT-C-T
* *
151594 GGGTGATAACATGGTTCCTACGTGATGAGGACGGCTGGTTATCT
1 GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
151638 GGGT
1 GGGT
151642 TGACACAGCT
Statistics
Matches: 526, Mismatches: 127, Indels: 148
0.66 0.16 0.18
Matches are distributed among these distances:
37 8 0.02
38 11 0.02
39 51 0.10
40 98 0.19
41 13 0.02
42 70 0.13
43 56 0.11
44 41 0.08
45 11 0.02
46 161 0.31
47 6 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (44 bp):
GGGTGATAACACGGTTCCTACGTGATGAGGACGGATGGTTATCT
Found at i:151327 original size:42 final size:42
Alignment explanation
Indices: 151270--151410 Score: 130
Period size: 42 Copynumber: 3.4 Consensus size: 42
151260 TTATAACATG
* *
151270 GTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACACA
1 GTTCCTACATAATGAGGACGGCTGGTTATCTGGGTTGACACA
* * **
151312 GTTCCTACATAATGAGGA-GATCTGG---TC-GGTGATGACATG
1 GTTCCTACATAATGAGGACG-GCTGGTTATCTGG-GTTGACACA
* * * *
151351 GTTCCTACGTGATGAGGACGGTTGTTTATCTGGGTTGACACA
1 GTTCCTACATAATGAGGACGGCTGGTTATCTGGGTTGACACA
*
151393 GCTCCTACATAATGAGGA
1 GTTCCTACATAATGAGGA
151411 GATCTGGTCG
Statistics
Matches: 75, Mismatches: 17, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
38 2 0.03
39 26 0.35
40 1 0.01
41 1 0.01
42 43 0.57
43 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (42 bp):
GTTCCTACATAATGAGGACGGCTGGTTATCTGGGTTGACACA
Found at i:151364 original size:81 final size:82
Alignment explanation
Indices: 151265--151430 Score: 298
Period size: 81 Copynumber: 2.0 Consensus size: 82
151255 AAGGGTTATA
*
151265 ACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACACAGTTCCTACATAATGAGGA
1 ACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACACAGCTCCTACATAATGAGGA
151330 GATCTGGTC-GGTGATG
66 GATCTGGTCGGGTGATG
* *
151346 ACATGGTTCCTACGTGATGAGGACGGTTGTTTATCTGGGTTGACACAGCTCCTACATAATGAGGA
1 ACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACACAGCTCCTACATAATGAGGA
151411 GATCTGGTCGGGTGATG
66 GATCTGGTCGGGTGATG
151428 ACA
1 ACA
151431 CGACTCATAC
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 71 0.88
82 10 0.12
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (82 bp):
ACATGGTTCCTACGTGATGAGGACGGCTGGTTATCTGGGTTGACACAGCTCCTACATAATGAGGA
GATCTGGTCGGGTGATG
Done.