genome.fa.s9646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009646.1 Hibiscus syriacus cultivar Beakdansim tig00117070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122845

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16482--16533	7	7.9	7	83	16	67	71	0	0	28	0.87
16482--16533	3	16.0	3	81	18	52	71	0	0	28	0.87
16482--16529	19	2.5	19	86	13	71	72	0	0	27	0.84
34151--34184	17	2.0	17	100	0	68	29	29	11	29	1.92
39674--39726	21	2.5	22	79	17	58	39	11	5	43	1.64
42247--42436	40	4.8	40	94	0	317	25	15	27	32	1.95
49752--49940	40	4.8	40	89	1	272	22	14	28	34	1.93
49773--49923	79	1.9	79	93	0	257	23	14	27	35	1.93
56139--56167	8	3.8	8	95	4	51	51	0	6	41	1.28
56189--56288	36	2.7	37	74	20	102	40	8	5	47	1.55
56881--56961	32	2.5	32	92	6	137	22	19	22	35	1.96
69026--69074	26	1.9	25	88	12	73	73	0	2	24	0.94
69106--69151	15	3.1	15	87	12	60	54	6	2	36	1.39
69108--69155	8	6.4	8	81	18	59	50	8	2	39	1.44
69108--69155	23	2.1	22	88	11	71	50	8	2	39	1.44
70699--70748	20	2.4	20	86	6	73	46	14	10	30	1.77
71941--71986	20	2.3	20	82	10	60	34	23	2	39	1.67
73156--73218	30	2.1	30	85	2	83	28	17	6	47	1.72
74434--74885	149	3.0	149	96	0	823	41	21	12	24	1.88
76087--76179	21	4.5	21	75	4	91	39	17	24	18	1.91
76087--76179	41	2.3	41	98	0	177	39	17	24	18	1.91
76106--76240	41	3.3	41	81	6	123	38	20	21	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76168--76262	20	4.7	20	80	2	91	34	24	17	23	1.96
76450--76492	22	2.0	22	95	0	77	20	44	16	18	1.87
76756--76793	20	1.9	20	88	0	58	13	15	21	50	1.78
78115--78159	18	2.5	18	92	0	81	24	44	17	13	1.85
78641--78707	20	3.4	20	81	2	73	38	23	22	14	1.92
78696--78753	14	3.9	14	79	16	71	48	24	17	10	1.78
78680--78770	32	2.8	33	94	3	166	47	21	18	12	1.81
78782--78844	14	4.3	14	79	16	74	7	15	25	50	1.71
78786--78860	32	2.3	33	95	2	134	10	18	25	45	1.82
78801--78918	20	6.4	19	77	11	95	13	19	24	42	1.87
78801--78918	39	3.2	37	73	12	102	13	19	24	42	1.87
80870--80907	20	1.9	20	94	0	67	39	23	21	15	1.92
80902--80969	19	3.8	19	85	14	101	47	17	22	13	1.82
80995--81065	20	3.5	20	100	0	142	15	23	26	33	1.95
80976--81063	40	2.4	34	75	20	95	13	25	23	37	1.92
82084--82137	24	2.2	24	90	0	81	24	16	20	38	1.92
84628--84758	19	7.7	19	64	23	85	42	19	22	15	1.88
84628--84754	33	3.8	33	87	4	193	42	18	22	15	1.89
84629--84761	66	2.0	66	95	0	239	41	18	22	17	1.90
84754--84796	20	2.2	20	83	4	52	18	18	20	41	1.90
84937--84973	14	2.6	14	91	0	65	45	24	0	29	1.53
88481--88579	33	3.0	33	89	1	144	39	26	23	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88456--88621	20	9.1	19	74	16	136	43	22	22	12	1.86
88617--88697	19	4.5	19	74	16	73	11	17	24	46	1.80
89217--89269	20	2.7	20	93	0	88	26	20	28	24	1.99
89321--89361	21	2.0	21	85	0	55	34	31	17	17	1.93
89504--89533	15	2.0	15	93	0	51	50	6	13	30	1.67
91071--91131	3	20.3	3	86	6	88	65	1	1	31	1.12
92786--92886	35	2.8	36	87	3	150	36	14	12	35	1.85
98153--98187	16	2.1	17	94	5	63	37	11	17	34	1.85
98182--98286	35	2.9	36	90	2	167	36	18	12	33	1.88
110766--110799	14	2.3	15	90	5	52	70	0	2	26	1.01

Tables:   1

The End!