Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000965.1 Hibiscus syriacus cultivar Beakdansim tig00001927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122326

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2047--2144
38
2.6
38
81
1
106
14
18
35
31
1.91
7508--7622
61
1.9
61
94
0
203
26
20
26
25
1.99
7514--7640
61
2.1
61
86
0
173
27
21
23
27
1.99
8579--8670
42
2.2
42
88
0
130
30
34
18
16
1.93
8790--8842
21
2.5
21
84
0
70
18
11
33
35
1.87
9246--9364
21
5.7
21
78
7
125
22
33
16
26
1.96
9242--9364
42
2.9
42
81
9
151
22
33
17
26
1.96
14261--14298
16
2.5
15
88
12
60
68
0
2
28
1.03
14436--14482
18
2.5
19
89
6
69
40
10
19
29
1.85
14479--14547
20
3.4
20
80
9
77
37
11
18
31
1.87
20502--20533
2
16.0
2
93
0
55
53
0
0
46
1.00
23022--23051
13
2.4
13
94
5
53
40
0
0
60
0.97
23232--23282
25
2.0
26
82
14
63
64
1
0
33
1.05
33870--34190
104
3.1
103
79
7
351
31
22
14
31
1.93
34586--34642
26
2.2
27
76
17
68
42
0
3
54
1.17
34618--34656
17
2.2
18
86
4
53
46
0
2
51
1.14
34618--34660
18
2.4
18
84
7
52
44
0
2
53
1.13
35846--35886
22
2.0
22
85
9
59
48
7
2
41
1.44
37180--37215
2
18.0
2
94
0
63
50
2
0
47
1.15
44921--44978
21
2.8
21
76
10
57
5
22
17
55
1.62
44931--44959
15
1.9
15
100
0
58
3
20
20
55
1.58
51363--51395
3
11.0
3
100
0
66
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52342--52369
3
9.3
3
100
0
56
32
0
0
67
0.91
53854--53879
5
5.2
5
100
0
52
19
57
23
0
1.40
53815--53901
13
6.3
13
77
9
75
17
44
20
17
1.86
53874--53922
8
6.1
8
84
15
66
14
34
26
24
1.94
58940--58965
5
5.2
5
100
0
52
19
57
23
0
1.40
58901--58973
13
5.5
13
77
6
74
17
46
20
15
1.84
58960--59006
17
3.1
15
82
17
53
14
34
27
23
1.94
61854--61940
30
2.8
31
75
8
79
18
27
29
24
1.98
63915--63989
6
12.5
6
100
0
150
16
50
0
33
1.45
69462--69499
2
19.0
2
100
0
76
50
0
0
50
1.00
71944--71968
3
8.3
3
100
0
50
32
0
36
32
1.58
72369--72426
28
2.1
28
100
0
116
32
3
10
53
1.52
73821--73859
17
2.4
17
95
4
71
51
5
0
43
1.24
74164--74238
38
2.0
38
81
5
89
26
18
17
37
1.93
75141--75181
19
2.2
19
86
8
57
46
4
0
48
1.23
75284--75328
21
2.0
23
83
8
58
48
2
4
44
1.35
75663--75788
60
2.1
60
88
2
182
34
13
15
36
1.87
78449--78474
2
13.0
2
100
0
52
50
0
0
50
1.00
78474--78512
2
19.5
2
100
0
78
51
0
48
0
1.00
94517--94644
59
2.2
59
85
0
166
28
25
19
27
1.99
100345--100392
24
2.0
25
87
4
71
45
25
22
6
1.75
100912--101013
52
2.0
52
86
1
143
28
37
8
25
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100931--101039
52
2.1
52
85
0
146
26
37
6
29
1.81
101012--101067
28
2.0
28
92
0
94
28
32
3
35
1.74
106124--106161
2
19.0
2
100
0
76
50
0
0
50
1.00
108736--108793
29
1.9
31
86
6
84
15
12
18
53
1.72

Tables:   1

The End!