Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000966.1 Hibiscus syriacus cultivar Beakdansim tig00001928_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100856

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4088--4127
21
1.9
21
90
10
64
27
15
27
30
1.96
13645--13669
2
12.5
2
100
0
50
52
0
0
48
1.00
18322--18369
2
24.0
2
100
0
96
50
0
0
50
1.00
40407--40496
43
2.0
44
89
4
137
30
14
28
26
1.95
40966--41018
22
2.6
21
88
8
74
47
15
5
32
1.68
41140--41191
23
2.4
21
84
15
70
53
0
11
34
1.37
49232--49299
23
3.0
23
86
0
100
17
26
26
29
1.98
53702--53733
2
16.0
2
100
0
64
50
0
0
50
1.00
54217--54284
23
3.0
23
88
0
100
19
26
26
27
1.99
57826--57928
30
3.4
30
91
2
145
31
26
21
21
1.98
57910--58041
31
4.2
31
77
9
115
34
19
19
26
1.96
59318--59362
21
2.1
21
87
0
63
15
24
28
31
1.96
62491--62593
30
3.4
30
91
2
145
31
26
21
21
1.98
62575--62706
31
4.2
31
80
9
151
33
21
19
25
1.97
63990--64034
21
2.1
21
87
0
63
15
24
28
31
1.96
66419--66467
6
8.2
6
86
8
73
16
18
18
46
1.84
66419--66467
19
2.7
18
90
6
73
16
18
18
46
1.84
71061--71230
37
4.6
37
76
1
171
35
21
16
25
1.94
71056--71202
73
2.0
73
85
0
195
38
21
16
24
1.93
71573--72253
55
12.4
55
84
4
682
33
18
23
25
1.97
71573--72683
55
20.3
54
86
5
670
33
16
23
26
1.96
72177--72791
273
2.3
268
85
7
789
33
15
22
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72177--72764
55
10.8
55
86
5
729
34
15
22
27
1.95
72956--73015
15
3.7
15
73
18
50
46
3
0
50
1.18
80008--80044
18
2.2
16
90
9
56
40
0
0
59
0.97
85135--85172
19
2.0
19
100
0
76
36
21
15
26
1.93
89783--89844
31
2.0
31
93
0
106
25
38
12
22
1.90
90400--90461
30
2.1
30
96
0
115
22
24
37
16
1.94
94516--94540
6
4.2
6
100
0
50
36
48
16
0
1.46
94537--94569
5
6.6
5
100
0
66
39
21
39
0
1.53
95048--95089
6
7.5
6
97
2
63
0
16
54
28
1.42
95194--95236
22
2.0
22
100
0
86
39
27
13
18
1.89
98300--98351
20
2.6
20
87
0
77
11
21
21
46
1.82
98343--98383
21
2.0
21
100
0
82
19
19
24
36
1.95
98346--98393
21
2.3
21
89
7
71
20
18
25
35
1.95
99101--99153
22
2.4
22
93
0
97
37
28
16
16
1.91

Tables:   1

The End!