Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000967.1 Hibiscus syriacus cultivar Beakdansim tig00001929_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63506

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1826--1857
4
8.0
4
100
0
64
25
25
0
50
1.50
7879--8447
262
2.2
262
85
5
769
33
14
16
35
1.89
8468--8532
25
2.6
25
88
11
96
72
1
15
10
1.19
10651--10713
8
8.0
8
76
15
53
22
4
0
73
1.02
10648--10680
16
2.1
16
100
0
66
30
6
0
63
1.18
13277--13477
95
2.1
95
84
4
262
36
15
14
32
1.89
14291--15394
84
13.1
84
84
1
1267
34
22
18
24
1.96
17248--17276
12
2.3
13
94
5
51
27
3
0
68
1.05
19072--19139
36
2.0
33
85
8
91
27
8
8
54
1.61
19294--19330
2
18.5
2
100
0
74
51
0
0
48
1.00
19253--19366
56
2.1
54
90
6
176
44
4
5
45
1.46
19392--19449
30
2.1
29
87
12
86
46
3
6
43
1.47
19352--19541
69
2.8
67
84
8
260
45
2
8
43
1.47
19408--19489
41
2.0
40
85
2
110
42
3
10
42
1.57
19449--19514
29
2.3
28
87
5
96
42
1
12
43
1.51
19618--19685
16
4.2
16
74
22
63
19
2
0
77
0.89
19619--19683
23
2.6
25
85
9
98
20
3
0
76
0.91
19619--19685
7
9.7
7
69
15
50
19
2
0
77
0.89
31294--31401
23
4.8
23
81
4
123
23
25
20
30
1.98
32442--32471
15
2.0
15
100
0
60
40
0
26
33
1.57
33586--33653
33
2.1
33
91
0
109
36
2
23
36
1.70
40394--40509
20
5.8
20
92
0
160
27
18
19
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40738--40956
36
6.1
36
87
3
280
39
16
17
26
1.90
41210--41239
3
10.0
3
100
0
60
66
0
0
33
0.92
41329--41367
19
2.1
19
90
4
62
33
35
12
17
1.88
43959--44411
149
3.0
148
81
3
498
37
15
24
22
1.93
45870--45925
29
1.9
29
85
7
78
75
0
16
8
1.05
46915--46978
32
2.0
32
90
0
101
25
15
28
31
1.96
47305--47492
36
5.1
36
81
3
171
28
17
12
40
1.86
47418--47484
22
3.4
22
69
26
67
23
22
14
38
1.92
47389--47503
37
3.1
37
93
1
196
26
21
14
36
1.93
47431--47492
22
3.2
20
65
28
53
20
19
17
41
1.90
47489--47631
30
4.6
30
80
13
171
31
21
10
36
1.87
47452--47601
66
2.3
67
91
1
239
28
22
12
37
1.90
47407--47669
96
2.6
97
83
7
307
28
20
13
36
1.91
48084--48938
44
19.5
44
66
3
279
30
20
18
30
1.96
48074--48960
132
6.7
132
86
3
1099
30
20
18
31
1.96
48074--48955
394
2.2
393
86
3
1191
30
20
18
30
1.96
51172--51233
31
2.1
28
82
8
70
19
1
6
72
1.15
53950--53989
20
2.0
20
85
5
53
55
7
7
30
1.56
54385--54676
2
151.5
2
68
21
144
39
1
5
54
1.30
54379--54735
5
71.4
5
69
23
120
36
1
4
56
1.29
54656--54733
41
1.9
40
89
7
122
33
2
1
62
1.17
55826--55895
35
2.1
33
84
10
88
21
2
1
74
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55842--55889
5
9.8
5
78
13
55
20
2
0
77
0.88

Tables:   1

The End!