Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000969.1 Hibiscus syriacus cultivar Beakdansim tig00001934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53174

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4533--4981
246
1.8
248
85
2
643
31
16
16
34
1.92
5144--5235
3
30.0
3
76
16
73
39
2
2
56
1.24
5145--5235
31
2.8
34
80
12
111
39
2
2
56
1.24
5144--5230
28
3.2
29
77
17
73
39
2
2
56
1.25
7266--7540
2
144.5
2
66
23
96
46
5
3
45
1.41
7285--7540
9
28.3
9
68
18
95
47
5
2
44
1.39
10302--10332
16
2.0
16
93
6
55
45
0
32
22
1.53
10422--10496
36
2.2
32
75
18
80
25
20
8
46
1.77
10433--10490
16
3.4
16
69
17
53
18
17
6
56
1.62
15503--15547
19
2.4
19
92
0
72
24
15
26
33
1.95
24386--24420
12
2.9
12
91
8
54
57
0
0
42
0.99
24460--24508
19
2.7
18
87
9
73
71
6
4
18
1.23
24703--24761
29
2.0
30
83
9
77
57
3
8
30
1.45
25300--25350
25
2.1
23
89
7
75
3
21
5
68
1.27
25805--25836
11
2.8
11
95
4
55
43
0
0
56
0.99
25832--25905
3
24.7
3
97
0
139
64
0
1
33
1.02
26219--26775
113
4.9
113
94
1
956
30
20
12
36
1.89
26219--26772
227
2.4
225
94
1
966
30
20
11
37
1.89
27515--27837
84
3.9
84
93
3
555
37
21
13
27
1.91
28955--29024
11
6.2
11
79
12
70
2
15
0
81
0.81
40396--40430
12
2.8
13
87
12
56
57
0
0
42
0.99
40470--40518
19
2.7
18
87
9
73
71
6
4
18
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40716--40774
29
2.0
30
83
9
77
57
3
8
30
1.45
41311--41361
25
2.1
23
89
7
75
3
21
5
68
1.27
41817--41848
11
2.8
11
95
4
55
43
0
0
56
0.99
41844--41917
3
24.7
3
94
0
130
63
1
1
33
1.11
43243--43916
373
1.8
370
81
7
844
35
16
13
34
1.88
47180--47241
14
4.4
14
81
0
79
29
11
29
30
1.91
53074--53115
18
2.3
18
100
0
84
33
0
38
28
1.58

Tables:   1

The End!