Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000970.1 Hibiscus syriacus cultivar Beakdansim tig00001939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76117

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
606--643
20
1.9
20
88
0
58
13
10
2
73
1.19
10817--10936
41
2.9
41
80
3
98
30
30
16
22
1.96
11787--11836
12
4.5
12
72
27
56
46
2
0
52
1.12
13063--13117
17
3.3
17
82
7
51
14
10
1
72
1.19
13143--13183
17
2.4
17
91
0
64
14
2
4
78
1.03
13143--13188
17
2.6
18
83
13
60
17
2
4
76
1.06
13226--13274
22
2.2
22
78
7
55
8
12
2
77
1.07
13218--13307
13
6.8
12
81
13
63
11
7
3
77
1.08
13215--13305
23
4.1
20
73
17
56
9
7
4
78
1.09
13272--13317
22
2.1
22
83
0
56
15
4
6
73
1.19
14598--14641
2
22.0
2
100
0
88
50
0
0
50
1.00
24720--24765
18
2.3
20
75
17
51
47
8
0
43
1.34
25470--25556
24
3.6
24
92
0
138
40
22
19
17
1.91
29102--29184
41
2.0
41
88
4
123
18
19
3
59
1.53
31277--31308
15
2.1
15
100
0
64
40
12
0
46
1.42
31768--31899
65
2.1
60
83
8
158
28
14
11
45
1.79
31910--32028
38
3.1
38
77
9
134
26
25
6
41
1.80
32831--32879
20
2.5
20
86
6
64
36
16
26
20
1.93
33371--33720
47
7.4
47
90
0
511
44
10
21
24
1.83
33404--33585
27
7.6
25
70
23
142
42
11
24
21
1.85
33384--33558
20
7.7
20
68
23
89
42
11
24
21
1.86
33526--33598
20
3.3
20
70
23
56
42
10
26
20
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37656--37694
21
2.0
20
85
10
53
41
7
25
25
1.82
39537--39580
19
2.3
19
88
0
70
34
9
22
34
1.86
40007--40453
47
9.5
47
90
0
707
43
9
22
23
1.83
40011--40453
27
18.8
26
65
25
213
43
9
22
23
1.83
41533--41576
17
2.6
16
79
10
52
34
9
0
56
1.31
41855--41914
23
2.6
22
79
7
66
31
6
3
58
1.40
43261--43307
21
2.2
22
84
3
60
21
8
2
68
1.27
46332--46360
15
1.9
15
100
0
58
34
17
27
20
1.95
47046--47099
16
3.4
16
75
14
58
31
5
20
42
1.75
47316--47361
24
1.9
24
90
0
74
15
17
26
41
1.88
47475--47532
6
9.7
6
82
0
62
41
1
20
36
1.63
47475--47532
24
2.4
24
85
5
73
41
1
20
36
1.63
52122--52163
20
2.1
20
86
0
57
71
2
21
4
1.16
61166--61204
21
1.9
20
84
5
51
33
23
15
28
1.95

Tables:   1

The End!