Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000971.1 Hibiscus syriacus cultivar Beakdansim tig00001940_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53705

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3076--3114
19
2.1
19
85
0
51
56
7
2
33
1.41
5267--5342
29
2.5
29
72
18
66
56
1
1
40
1.16
12148--12180
15
2.1
16
88
11
50
81
0
0
18
0.68
13722--13763
17
2.5
17
76
3
50
54
0
0
45
0.99
14826--14867
16
2.4
18
84
15
70
42
9
30
16
1.80
14834--14873
16
2.5
16
95
0
71
40
12
27
20
1.88
17324--17403
39
2.1
39
100
0
160
48
6
12
32
1.66
19404--19435
10
2.8
12
86
13
50
28
18
28
25
1.98
19489--19590
29
3.6
29
82
2
134
46
18
8
26
1.78
19594--19618
13
1.9
13
100
0
50
16
28
48
8
1.74
19597--19639
18
2.4
18
92
0
68
9
25
48
16
1.75
26769--26870
29
3.6
29
81
2
134
47
18
7
26
1.76
26877--26919
18
2.4
18
92
0
77
11
23
48
16
1.78
26873--26901
13
2.2
13
100
0
58
17
24
41
17
1.90
28285--28322
15
2.5
15
87
8
51
42
10
0
47
1.38
28124--28586
139
3.3
138
83
6
524
43
12
11
32
1.78
28172--28586
139
3.0
140
85
4
536
44
12
12
31
1.78
28782--28838
26
2.1
27
80
3
62
64
5
8
21
1.41
28844--29052
113
1.8
113
89
0
328
57
8
10
23
1.58
29198--29238
22
1.9
21
85
5
55
39
0
24
36
1.56
29334--29400
28
2.4
28
85
9
84
62
7
5
23
1.44
30272--30311
3
13.0
3
94
5
71
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31271--31310
20
2.0
21
85
5
55
35
12
5
47
1.63
35720--35765
21
2.2
21
92
3
76
86
0
8
4
0.68
35720--35763
16
2.5
18
85
10
56
86
0
9
4
0.70
35736--35846
51
2.1
52
81
6
127
73
2
17
6
1.15
35806--35874
16
4.5
14
74
20
50
72
1
24
1
1.01
35809--35871
33
1.9
33
81
12
76
71
1
25
1
1.04
35770--35874
51
2.1
49
82
7
122
71
0
23
3
1.08
38552--38688
36
3.8
36
76
7
145
23
20
14
41
1.89
38567--38822
138
1.8
140
83
6
342
25
18
13
42
1.87
39100--39960
139
6.3
138
80
5
851
36
17
20
25
1.94
39980--40083
41
2.5
42
85
4
131
31
23
18
26
1.97
39980--40086
42
2.6
41
86
4
135
31
23
17
27
1.97
40079--40109
16
1.9
16
93
0
53
29
29
16
25
1.96
43248--44433
214
5.5
214
91
2
1641
32
18
16
33
1.93
43912--44018
42
2.6
41
77
5
117
29
21
22
26
1.99
43248--44433
430
2.8
428
89
2
1718
32
18
16
33
1.93
44127--44232
42
2.6
41
76
8
115
29
20
23
26
1.99
45210--45531
125
2.6
125
85
1
421
22
27
16
33
1.95
50555--50590
6
6.0
6
93
0
63
47
16
19
16
1.83

Tables:   1

The End!