genome.fa.s973.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000973.1 Hibiscus syriacus cultivar Beakdansim tig00001947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80918

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2455--2500	6	7.8	6	92	4	67	32	45	21	0	1.52
2457--2500	23	1.9	23	90	0	70	31	45	22	0	1.53
2976--3020	21	2.1	21	88	8	65	0	17	53	28	1.44
3116--3168	22	2.4	22	93	0	97	37	28	16	16	1.91
6148--6309	20	7.9	20	74	2	108	19	18	22	39	1.92
6175--6269	21	4.6	21	70	2	84	26	16	24	32	1.96
6155--6312	41	3.9	41	73	3	156	20	18	22	38	1.93
6301--6353	22	2.4	22	96	0	97	18	18	26	35	1.95
6151--6312	62	2.6	61	77	1	198	20	18	22	38	1.93
7079--7131	22	2.4	22	90	0	88	37	26	16	18	1.93
11503--11585	31	2.7	31	96	0	148	37	24	19	19	1.94
13733--13801	25	2.8	25	95	0	120	27	24	27	20	1.99
15469--15513	21	2.1	21	87	0	63	15	24	28	31	1.96
18779--18823	23	2.0	23	86	0	63	26	26	26	20	1.99
18931--18981	25	2.0	26	96	3	95	33	23	23	19	1.97
24649--24726	31	2.5	31	91	4	122	39	20	17	21	1.92
28809--28861	26	2.0	26	100	0	106	58	3	15	22	1.53
29091--29131	6	6.8	6	100	0	82	0	65	0	34	0.93
37327--37354	2	14.0	2	100	0	56	50	0	0	50	1.00
37651--37724	29	2.5	30	86	2	96	33	28	20	17	1.95
37710--37805	31	3.1	31	84	3	122	33	21	20	23	1.97
38707--38764	20	2.6	22	89	10	84	25	22	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38752--38892	64	2.2	63	81	7	160	26	24	17	32	1.96
44625--44932	126	2.4	127	93	1	519	41	12	8	36	1.74
45052--45076	3	8.3	3	100	0	50	68	0	0	32	0.90
45761--45803	20	2.2	20	87	8	61	46	2	0	51	1.13
47207--47237	15	2.0	16	93	6	55	41	0	0	58	0.98
48696--48755	28	2.2	28	84	3	77	41	0	10	48	1.37
51204--51381	40	4.9	35	72	21	100	46	3	6	43	1.48
51273--51482	71	3.0	68	73	14	187	46	3	7	42	1.49
51366--51433	33	2.1	31	86	5	91	44	4	5	45	1.48
51499--51530	17	1.9	16	93	6	55	34	3	6	56	1.40
51547--51585	18	2.2	18	86	9	53	23	15	0	61	1.33
56413--57665	106	11.8	106	96	0	2220	33	25	18	23	1.97
57907--58257	84	4.2	82	76	6	287	29	24	20	24	1.99
58740--58880	37	3.9	35	72	21	98	46	4	6	43	1.49
58772--58981	71	3.0	68	73	14	196	46	4	7	42	1.51
58865--58932	32	2.1	31	84	10	84	44	5	5	44	1.52
58662--59012	139	2.4	139	78	11	334	44	4	7	43	1.52
59045--59083	18	2.2	18	86	9	53	23	15	0	61	1.33
66831--66878	22	2.2	22	100	0	96	14	27	8	50	1.71
75665--76114	22	20.6	22	80	7	506	40	0	10	48	1.42
75665--76114	43	10.3	44	82	9	492	40	0	10	48	1.42
75881--75937	30	1.9	29	92	3	96	35	0	8	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76316--76366	23	2.2	23	92	0	84	21	15	35	27	1.94
76540--76597	24	2.3	25	79	5	64	44	1	3	50	1.29
79090--79152	19	3.5	18	76	20	60	52	1	4	41	1.32
80070--80127	30	1.9	31	92	3	100	43	6	8	41	1.62
80152--80190	20	1.9	21	94	5	71	51	15	0	33	1.44
80142--80434	52	5.5	53	71	17	220	52	14	0	32	1.42
80206--80279	22	3.2	22	74	12	76	56	16	0	27	1.40
80256--80697	30	16.3	30	69	24	217	52	13	0	33	1.41
80142--80357	82	2.7	84	82	16	310	52	13	0	33	1.41
80312--80397	22	3.8	22	82	8	118	51	16	0	32	1.45
80389--80697	31	11.3	31	70	24	148	52	13	0	34	1.40
80154--80444	104	2.8	101	76	13	292	53	14	0	31	1.42
80444--80488	21	2.1	21	95	0	81	51	13	0	35	1.41
80451--80573	21	6.2	21	69	19	66	52	15	0	31	1.43
80605--80646	21	2.0	22	95	4	77	50	14	0	35	1.43
80607--80653	21	2.2	22	88	3	69	53	14	0	31	1.42
80156--80697	186	2.9	187	76	13	578	52	14	0	33	1.41
80677--80833	15	10.5	15	79	14	173	52	2	0	44	1.14
80599--80761	49	3.4	48	77	12	156	50	7	0	41	1.31

Tables:   1

The End!