Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000976.1 Hibiscus syriacus cultivar Beakdansim tig00001952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60177

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2052--2089
19
2.0
20
89
5
60
55
0
0
44
0.99
2930--2959
13
2.3
13
94
0
51
46
0
3
50
1.18
5276--5335
17
3.5
17
76
19
63
76
0
10
13
1.01
5290--5324
11
3.1
11
88
8
52
77
0
11
11
1.00
13725--13772
23
2.1
23
88
0
69
35
12
16
35
1.87
14246--14318
23
3.2
23
88
0
101
38
19
5
36
1.75
14680--14729
23
2.2
23
92
0
82
38
22
6
34
1.78
17523--20292
183
15.2
183
97
0
5143
33
16
14
35
1.90
21504--21615
12
9.3
12
88
0
143
19
33
8
38
1.83
21504--21602
6
16.5
6
80
0
99
20
33
9
37
1.84
23056--24036
200
4.9
200
97
0
1858
31
17
15
36
1.91
23056--24036
398
2.5
400
98
0
1876
31
17
15
36
1.91
24137--24197
19
3.3
18
88
2
59
52
11
1
34
1.47
24149--24197
19
2.6
19
96
0
89
55
10
2
32
1.45
25984--26049
33
2.0
33
87
0
96
22
46
0
30
1.52
26095--26147
21
2.5
21
90
0
88
15
30
9
45
1.77
28369--28424
20
2.8
19
76
7
58
21
14
8
55
1.66
28340--28809
180
2.6
179
83
5
577
28
15
11
43
1.83
32599--32694
39
2.5
39
86
1
140
38
14
2
44
1.57
36807--36868
30
2.1
30
93
0
106
25
29
4
40
1.76
39104--39165
23
2.7
22
80
5
70
20
24
32
22
1.98
39104--39148
23
2.0
23
90
0
72
22
24
31
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48468--48510
20
2.3
19
84
15
54
32
11
25
30
1.91
48972--49041
15
4.7
15
75
7
70
28
5
21
44
1.75
49144--49195
23
2.3
23
79
0
59
28
21
15
34
1.94
49153--49201
23
2.1
23
84
0
62
24
22
22
30
1.99
53731--53770
19
2.1
19
100
0
80
27
10
47
15
1.77
55173--55242
15
4.7
15
74
0
68
31
4
22
41
1.73
55176--55240
30
2.2
30
82
0
76
30
4
24
40
1.75
55345--55418
23
3.2
22
77
11
69
21
25
18
33
1.96
55345--55444
46
2.1
47
80
12
109
23
24
20
33
1.97
55411--55466
24
2.4
24
79
8
62
32
19
17
30
1.95
58856--58893
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!