genome.fa.s979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000979.1 Hibiscus syriacus cultivar Beakdansim tig00001956_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117841

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1580--1627	21	2.3	21	85	7	62	33	2	0	64	1.05
5431--5480	19	2.5	20	80	3	57	42	12	16	30	1.84
11795--11846	17	3.2	17	75	10	54	50	13	3	32	1.60
14512--14552	3	13.3	3	89	5	64	36	34	0	29	1.58
17233--17275	18	2.3	19	88	4	61	32	9	2	55	1.44
20883--20958	20	3.8	19	73	20	66	27	13	25	34	1.93
23344--23368	13	1.9	13	100	0	50	20	0	0	80	0.72
23593--23631	18	2.2	18	100	0	78	15	38	28	17	1.91
23661--23791	63	2.0	64	92	2	219	42	15	17	24	1.88
28147--28194	24	2.0	24	100	0	96	37	20	12	29	1.90
31623--31653	6	5.0	6	96	4	53	64	3	0	32	1.09
31731--31781	18	2.8	18	77	14	50	72	3	1	21	1.11
31760--31804	22	2.0	23	95	4	83	68	0	4	26	1.08
33019--33055	19	1.9	19	88	0	56	37	13	21	27	1.91
33556--33599	16	2.8	16	96	0	79	40	22	0	36	1.54
36275--36317	21	2.1	20	82	4	50	44	11	18	25	1.84
36408--36809	37	11.6	37	65	20	163	39	12	17	30	1.87
36392--36870	102	4.7	102	94	0	832	37	12	18	31	1.88
36780--36956	87	2.1	85	93	2	300	37	12	18	31	1.88
36392--36966	102	5.8	101	89	5	741	38	12	17	31	1.88
39049--39100	26	2.0	26	100	0	104	23	19	15	42	1.89
40899--40923	11	2.3	11	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43619--43662	23	2.0	22	86	4	61	63	2	9	25	1.35
45917--45957	17	2.4	17	95	0	73	14	2	17	65	1.37
54252--54299	22	2.2	22	92	0	78	54	12	25	8	1.65
62037--62073	19	2.0	19	89	5	58	43	5	8	43	1.57
65749--65851	32	3.4	32	74	15	92	40	12	12	33	1.81
71795--72015	43	5.2	43	79	6	184	26	19	25	28	1.98
72477--72532	21	2.7	21	82	0	85	1	41	17	39	1.60
73500--73583	28	3.2	28	65	22	81	41	3	11	42	1.59
73503--73604	51	2.0	51	100	0	204	41	5	9	43	1.62
82377--82535	83	1.9	83	81	6	189	33	23	13	28	1.93
84057--84171	57	2.0	57	93	3	196	43	12	18	26	1.85
85204--85271	22	3.1	22	97	0	127	41	27	8	22	1.83
89722--89761	21	1.9	21	94	0	71	7	25	40	27	1.82
89742--89805	21	3.0	21	79	4	65	14	25	35	25	1.93
93607--93646	21	1.9	21	85	10	55	35	10	2	52	1.48
100726--100765	21	1.9	21	85	10	55	35	7	2	55	1.42
111940--111980	3	14.7	3	85	14	61	36	0	0	63	0.95
111937--111978	8	5.5	8	78	21	54	35	0	0	64	0.94
111940--111978	11	3.8	11	80	19	57	35	0	0	64	0.94
111943--111980	19	2.0	19	100	0	76	36	0	0	63	0.95
116076--116129	14	3.8	14	82	4	63	27	12	7	51	1.66
116091--116129	15	2.7	15	88	4	53	25	12	10	51	1.71

Tables:   1

The End!