Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000980.1 Hibiscus syriacus cultivar Beakdansim tig00001957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105463

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3101--3125
8
3.1
8
100
0
50
0
64
0
36
0.94
2993--3312
134
2.4
132
81
4
371
27
29
20
22
1.98
5884--5961
28
2.8
26
84
11
93
44
2
5
47
1.38
12556--12602
24
2.0
24
84
12
62
51
8
12
27
1.69
13031--13068
20
2.0
19
90
10
60
52
10
18
18
1.73
17545--17575
14
2.2
14
94
0
53
38
6
19
35
1.77
27511--27542
15
2.0
17
88
11
50
50
6
12
31
1.65
27789--27827
17
2.3
17
100
0
78
30
0
38
30
1.58
31638--31674
18
2.1
18
100
0
74
16
5
16
62
1.51
33393--33610
37
5.9
36
81
8
228
47
3
8
40
1.51
33406--33607
75
2.7
72
82
8
237
47
2
8
41
1.49
33393--33671
111
2.5
112
84
7
324
45
3
7
43
1.50
33387--33743
36
9.8
37
75
15
255
44
3
7
44
1.48
33720--33758
14
2.9
14
82
17
55
38
0
2
58
1.12
35152--35180
11
2.6
11
100
0
58
17
0
0
82
0.66
35131--35189
11
5.3
11
81
2
55
18
5
1
74
1.09
44381--44426
19
2.4
19
96
0
83
6
28
26
39
1.81
44672--44731
25
2.4
25
97
0
111
40
18
15
26
1.90
46938--46973
2
18.0
2
100
0
72
50
0
0
50
1.00
47859--47971
50
2.2
50
85
1
145
15
30
33
19
1.93
47983--48094
51
2.3
47
78
15
115
27
21
21
29
1.98
49599--49637
20
2.0
19
90
5
60
43
0
23
33
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49769--49876
51
2.2
50
83
3
128
18
34
33
13
1.90
51473--51516
20
2.2
20
87
0
61
63
15
0
20
1.31
51895--51934
2
20.0
2
100
0
80
50
0
0
50
1.00
52240--52279
21
1.9
21
84
0
53
52
5
7
35
1.51
52401--52450
13
4.0
13
78
17
61
62
2
0
36
1.07
53466--53554
23
3.8
23
82
4
99
30
25
26
16
1.97
58128--58189
31
2.0
31
100
0
124
35
35
3
25
1.72
67752--67818
30
2.2
31
81
7
75
32
16
14
35
1.90
69185--69227
21
2.0
23
90
9
72
37
4
0
58
1.19
69176--69263
28
2.8
32
79
17
96
31
10
1
56
1.40
76389--76453
34
2.0
32
91
8
105
30
13
9
46
1.75
76399--76451
15
3.0
19
63
21
51
35
15
7
41
1.75
88302--88378
2
38.5
2
100
0
154
50
0
0
49
1.00
102237--102290
10
5.1
12
93
6
59
51
0
3
44
1.19
102252--102291
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!